Pregenerated sensors for TRAV12D-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095689

Ensembl transcript IDs: ENSMUST00000181360.3, ENSMUST00000183652.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATGGAGAGTGGCGTaGAACCCTTGGTGCTCGGTCCTCTTGTTGTCTGTGGAGCTCCGC	+
Preference number: 5 (lower is better) Translates to: DFCRWKELLLLWRVA*NPWCSVLLLSVELR Trigger: GCGGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000181360.3 ENSMUST00000183652.2
CDS CCA 90 bp	CTGAGGACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATGGAGAGTaGCGTGGAACCCTTGGTGCTCGGTCCTCTTGTTGTCTGTGGAGC	+
Preference number: 5 (lower is better) Translates to: LRTSADGRSCCSYGE*RGTLGARSSCCLWS Trigger: GCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000181360.3 ENSMUST00000183652.2
CDS CCA 90 bp	AGCATCACAGGCAACCCTTCTGTGACAGTGACCAGGCCTTCTGTCTaGGTCACGGAGTCTCCATTGCTCCTTCTGAGCATTAGGAGGAGC	+
Preference number: 5 (lower is better) Translates to: SITGNPSVTVTRPSV*VTESPLLLLSIRRS Trigger: GCTCCTCCTAATGCTCAGAAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACAGAAGGGTTGCCTGTGATGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181360.3
CDS CCA 90 bp	AGCTGCACTGAGGACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATaGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTTGTTGTCT	+
Preference number: 5 (lower is better) Translates to: SCTEDFCRWKELLLL*RVAWNPWCSVLLLS Trigger: AGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGTGCAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000181360.3 ENSMUST00000183652.2
CDS CCA 90 bp	AGCATCACAGGCAACCCTTCTGTGACAGTGACCAGGCCTTCTGTCTaGGTCACGGAGTCTCCATTGCTCCTGAGCATTAGGAGGAGCACA	+
Preference number: 5 (lower is better) Translates to: SITGNPSVTVTRPSV*VTESPLLLSIRRST Trigger: TGTGCTCCTCCTAATGCTCAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACAGAAGGGTTGCCTGTGATGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183652.2
CDS GCA 72 bp	GCTGCACTGAGGACTTCTGCAGATGGAAGGAGCTGCTaGTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCT	+
Preference number: 6 (lower is better) Translates to: AALRTSADGRSC*SYGEWRGTLGA Trigger: AGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGTGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000181360.3 ENSMUST00000183652.2
CDS CCA 72 bp	GGCAACCCTTCTGTGACAGTGACCAGGCCTTCTGTCTaGGTCACGGAGTCTCCATTGCTCCTTCTGAGCATT	+
Preference number: 6 (lower is better) Translates to: GNPSVTVTRPSV*VTESPLLLLSI Trigger: AATGCTCAGAAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACAGAAGGGTTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181360.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu