Pregenerated sensors for TRAV12-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095958

Ensembl transcript IDs: ENSMUST00000103657.6

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGCTGCGCTGAGGACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATaGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTTGTTGTCT	+
Preference number: 5 (lower is better) Translates to: SCAEDFCRWKELLLL*RVAWNPWCSVLLLS Trigger: AGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGCGCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103657.6
CDS CCA 90 bp	GACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATGGAGAGTGGCGTaGAACCCTTGGTGCTCGGTCCTCTTGTTGTCTGTGGAGCTCTTC	+
Preference number: 5 (lower is better) Translates to: DFCRWKELLLLWRVA*NPWCSVLLLSVELF Trigger: GAAGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103657.6
CDS CAA 72 bp	TGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTaGTTGTCTGTGGAGCTCTTCAGGAGTAGCCGAGGG	+
Preference number: 6 (lower is better) Translates to: WRVAWNPWCSVL*LSVELFRSSRG Trigger: CCCTCGGCTACTCCTGAAGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103657.6
CDS CAA 72 bp	AGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTTGTaGTCTGTGGAGCTCTTCAGGAGTAGCCGAGGGGAT	+
Preference number: 6 (lower is better) Translates to: RVAWNPWCSVLL*SVELFRSSRGD Trigger: ATCCCCTCGGCTACTCCTGAAGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103657.6
CDS CAA 90 bp	CTGCTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTaGTTGTCTGTGGAGCTCTTCAGGAGTAGCCGAGGGGATTCATTG	+
Preference number: 6 (lower is better) Translates to: LLLWRVAWNPWCSVL*LSVELFRSSRGDSL Trigger: CAATGAATCCCCTCGGCTACTCCTGAAGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103657.6
CDS CAA 90 bp	CTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTTGTaGTCTGTGGAGCTCTTCAGGAGTAGCCGAGGGGATTCATTGAGA	+
Preference number: 6 (lower is better) Translates to: LLWRVAWNPWCSVLL*SVELFRSSRGDSLR Trigger: TCTCAATGAATCCCCTCGGCTACTCCTGAAGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103657.6

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