Pregenerated sensors for TRAV12-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096656

Ensembl transcript IDs: ENSMUST00000180972.3

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGCTGCGCTGAGGACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATaGAGAGTGGCGTGGAACCCTTGGTGCTCGGGCCTCTTGTTGTCT	+
Preference number: 5 (lower is better) Translates to: SCAEDFCRWKELLLL*RVAWNPWCSGLLLS Trigger: AGACAACAAGAGGCCCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGCGCAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180972.3
CDS CCA 72 bp	GAGGACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATaGAGAGTGGCGTGGAACCCTTGGTGCTCGGGCCTC	+
Preference number: 6 (lower is better) Translates to: EDFCRWKELLLL*RVAWNPWCSGL Trigger: GAGGCCCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180972.3
CDS CAA 72 bp	AGAGTGGCGTGGAACCCTTGGTGCTCGGGCCTCTTGTaGTCTGTGAAGCTCTTCAAAAGTAGCTTAGGGGCT	+
Preference number: 6 (lower is better) Translates to: RVAWNPWCSGLL*SVKLFKSSLGA Trigger: AGCCCCTAAGCTACTTTTGAAGAGCTTCACAGACAACAAGAGGCCCGAGCACCAAGGGTTCCACGCCACTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180972.3
CDS CAA 72 bp	TGGAGAGTGGCGTGGAACCCTTGGTGCTCGGGCCTCTaGTTGTCTGTGAAGCTCTTCAAAAGTAGCTTAGGG	+
Preference number: 6 (lower is better) Translates to: WRVAWNPWCSGL*LSVKLFKSSLG Trigger: CCCTAAGCTACTTTTGAAGAGCTTCACAGACAACAAGAGGCCCGAGCACCAAGGGTTCCACGCCACTCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180972.3
CDS CAA 90 bp	CTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCTCGGGCCTCTTGTaGTCTGTGAAGCTCTTCAAAAGTAGCTTAGGGGCTTCGTTGAGA	+
Preference number: 6 (lower is better) Translates to: LLWRVAWNPWCSGLL*SVKLFKSSLGASLR Trigger: TCTCAACGAAGCCCCTAAGCTACTTTTGAAGAGCTTCACAGACAACAAGAGGCCCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180972.3
CDS TCA 72 bp	CTTCTGTCTGGGTCACAGAGTCTCCATTGTTCCTTCTaGGCATTAAGAGGAGCACAAGAACTGAGCAGGTGT	+
Preference number: 6 (lower is better) Translates to: LLSGSQSLHCSF*ALRGAQELSRC Trigger: ACACCTGCTCAGTTCTTGTGCTCCTCTTAATGCTCAGAAGGAACAATGGAGACTCTGTGACCCAGACAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180972.3

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