Pregenerated sensors for TRAV12-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096825

Ensembl transcript IDs: ENSMUST00000103650.3, ENSMUST00000200115.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGCTTCACAGGCAACCCCTCGGTGACAGTGACCAGGCCTTCTGTCTaGGTCACGGAGTCTCCATTGCTCCTGAGCATTAGGAGGAGCACG	+
Preference number: 5 (lower is better) Translates to: SFTGNPSVTVTRPSV*VTESPLLLSIRRST Trigger: CGTGCTCCTCCTAATGCTCAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACCGAGGGGTTGCCTGTGAAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103650.3
CDS GCA 90 bp	AGTCTGACAGCTGCGCTGAGGACTTCTGCAGATGGAAGGAGCTGCTaGTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCT	+
Preference number: 5 (lower is better) Translates to: SLTAALRTSADGRSC*SYGEWRGTLGARSS Trigger: AGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGCGCAGCTGTCAGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103650.3 ENSMUST00000200115.2
CDS CCA 90 bp	AGCTTCACAGGCAACCCCTCGGTGACAGTGACCAGGCCTTCTGTCTaGGTCACGGAGTCTCCATTGCTCCTTCTGAGCATTAGGAGGAGC	+
Preference number: 5 (lower is better) Translates to: SFTGNPSVTVTRPSV*VTESPLLLLSIRRS Trigger: GCTCCTCCTAATGCTCAGAAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACCGAGGGGTTGCCTGTGAAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200115.2
CDS CCA 72 bp	GAGGACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATaGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTC	+
Preference number: 6 (lower is better) Translates to: EDFCRWKELLLL*RVAWNPWCSVL Trigger: GAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103650.3 ENSMUST00000200115.2
CDS CAA 90 bp	TCGGTGACAGTGACCAGGCCTTCTGTCTGGGTCACGGAGTCTCCATaGCTCCTGAGCATTAGGAGGAGCACGAGAACTGAGGAGGTGACA	+
Preference number: 6 (lower is better) Translates to: SVTVTRPSVWVTESP*LLSIRRSTRTEEVT Trigger: TGTCACCTCCTCAGTTCTCGTGCTCCTCCTAATGCTCAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103650.3
CDS CAA 90 bp	TCGGTGACAGTGACCAGGCCTTCTGTCTGGGTCACGGAGTCTCCATaGCTCCTTCTGAGCATTAGGAGGAGCACGAGAACTGAGGAGGTG	+
Preference number: 6 (lower is better) Translates to: SVTVTRPSVWVTESP*LLLSIRRSTRTEEV Trigger: CACCTCCTCAGTTCTCGTGCTCCTCCTAATGCTCAGAAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200115.2

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