Pregenerated sensors for TRAV11D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095088

Ensembl transcript IDs: ENSMUST00000103648.4

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CAACCAGGACTGTCAGGGACACAAGACCTTTGCCTGTGTCCTGTTTaGACCACCTTAAGTGGTTGTCGGGGGTCACACTGTAATTACATT	+
Preference number: 5 (lower is better) Translates to: QPGLSGTQDLCLCPV*TTLSGCRGSHCNYI Trigger: AATGTAATTACAGTGTGACCCCCGACAACCACTTAAGGTGGTTCAAACAGGACACAGGCAAAGGTCTTGTGTCCCTGACAGTCCTGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103648.4
CDS CCA 90 bp	TTATCCAGAGTTGCTGAGTATCTCCCATTTGACGTTTTGTCTTTTTaGTCAACCAGGACTGTCAGGGACACAAGACCTTTGCCTGTGTCC	+
Preference number: 5 (lower is better) Translates to: LSRVAEYLPFDVLSF*STRTVRDTRPLPVS Trigger: GGACACAGGCAAAGGTCTTGTGTCCCTGACAGTCCTGGTTGACCAAAAAGACAAAACGTCAAATGGGAGATACTCAGCAACTCTGGATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103648.4
CDS CAA 90 bp	TTAGCATCTTTATCCAGAGTTGCTGAGTATCTCCCATTTGACGTTTaGTCTTTTTGGTCAACCAGGACTGTCAGGGACACAAGACCTTTG	+
Preference number: 6 (lower is better) Translates to: LASLSRVAEYLPFDV*SFWSTRTVRDTRPL Trigger: CAAAGGTCTTGTGTCCCTGACAGTCCTGGTTGACCAAAAAGACAAAACGTCAAATGGGAGATACTCAGCAACTCTGGATAAAGATGCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103648.4

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