Pregenerated sensors for TRAV11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096615

Ensembl transcript IDs: ENSMUST00000103585.4

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 72 bp	GTTGCTGAGTATCTCCCATTTGACGTTTTGTCTTTTTaGTCAACCAGGACTGTCAGGGACACAAGACCTTTG	+
Preference number: 6 (lower is better) Translates to: VAEYLPFDVLSF*STRTVRDTRPL Trigger: CAAAGGTCTTGTGTCCCTGACAGTCCTGGTTGACCAAAAAGACAAAACGTCAAATGGGAGATACTCAGCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103585.4
CDS CAA 72 bp	TTATCCAGAGTTGCTGAGTATCTCCCATTTGACGTTTaGTCTTTTTGGTCAACCAGGACTGTCAGGGACACA	+
Preference number: 6 (lower is better) Translates to: LSRVAEYLPFDV*SFWSTRTVRDT Trigger: TGTGTCCCTGACAGTCCTGGTTGACCAAAAAGACAAAACGTCAAATGGGAGATACTCAGCAACTCTGGATAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103585.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu