Pregenerated sensors for TRAV1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076758

Ensembl transcript IDs: ENSMUST00000103567.6, ENSMUST00000185651.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	GCAAAGGTTCCCTCCACAGACATCAATTTGGCAGGCTaGTCCACACCCTGTCCTGCAGCACCTCCCACCGTC	+
Preference number: 6 (lower is better) Translates to: AKVPSTDINLAG*STPCPAAPPTV Trigger: GACGGTGGGAGGTGCTGCAGGACAGGGTGTGGAGCAGCCTGCCAAATTGATGTCTGTGGAGGGAACCTTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103567.6
CDS GCA 72 bp	GCAAAGGTTCCCTCCACAGACATCAATTTGGCAGGCTaGTCCACACCCTGTCCTGCAGCTCCCACCGTCAGG	+
Preference number: 6 (lower is better) Translates to: AKVPSTDINLAG*STPCPAAPTVR Trigger: CCTGACGGTGGGAGCTGCAGGACAGGGTGTGGAGCAGCCTGCCAAATTGATGTCTGTGGAGGGAACCTTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185651.2
CDS CAA 90 bp	TATGTGCAGTTGACCCGAGCAAAGGTTCCCTCCACAGACATCAATTaGGCAGGCTGCTCCACACCCTGTCCTGCAGCACCTCCCACCGTC	+
Preference number: 6 (lower is better) Translates to: YVQLTRAKVPSTDIN*AGCSTPCPAAPPTV Trigger: GACGGTGGGAGGTGCTGCAGGACAGGGTGTGGAGCAGCCTGCCAAATTGATGTCTGTGGAGGGAACCTTTGCTCGGGTCAACTGCACATA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103567.6
CDS CAA 90 bp	TATGTGCAGTTGACCCGAGCAAAGGTTCCCTCCACAGACATCAATTaGGCAGGCTGCTCCACACCCTGTCCTGCAGCTCCCACCGTCAGG	+
Preference number: 6 (lower is better) Translates to: YVQLTRAKVPSTDIN*AGCSTPCPAAPTVR Trigger: CCTGACGGTGGGAGCTGCAGGACAGGGTGTGGAGCAGCCTGCCAAATTGATGTCTGTGGAGGGAACCTTTGCTCGGGTCAACTGCACATA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185651.2
CDS CAA 72 bp	TTGACCCGAGCAAAGGTTCCCTCCACAGACATCAATTaGGCAGGCTGCTCCACACCCTGTCCTGCAGCTCCC	+
Preference number: 6 (lower is better) Translates to: LTRAKVPSTDIN*AGCSTPCPAAP Trigger: GGGAGCTGCAGGACAGGGTGTGGAGCAGCCTGCCAAATTGATGTCTGTGGAGGGAACCTTTGCTCGGGTCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185651.2
CDS CAA 72 bp	TTGACCCGAGCAAAGGTTCCCTCCACAGACATCAATTaGGCAGGCTGCTCCACACCCTGTCCTGCAGCACCT	+
Preference number: 6 (lower is better) Translates to: LTRAKVPSTDIN*AGCSTPCPAAP Trigger: AGGTGCTGCAGGACAGGGTGTGGAGCAGCCTGCCAAATTGATGTCTGTGGAGGGAACCTTTGCTCGGGTCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103567.6
CDS CAA 72 bp	GATAACCCGTTGAACCCTGAGGTGCTGTATGTGCAGTaGACCCGAGCAAAGGTTCCCTCCACAGACATCAAT	+
Preference number: 6 (lower is better) Translates to: DNPLNPEVLYVQ*TRAKVPSTDIN Trigger: ATTGATGTCTGTGGAGGGAACCTTTGCTCGGGTCAACTGCACATACAGCACCTCAGGGTTCAACGGGTTATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103567.6 ENSMUST00000185651.2

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