Pregenerated sensors for TRAPPC6B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020993Ensembl transcript IDs: ENSMUST00000021380.10, ENSMUST00000217660.2, ENSMUST00000217863.2, ENSMUST00000218686.2, ENSMUST00000218799.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTaGAATTTGCAGGCAGGCATTGAAGAGACTTCAGCTGTTACAATA | + |
|
Preference number: 1 (lower is better) Translates to: CPGVASSLYSFCIIT*NLQAGIEETSAVTI Trigger: TATTGTAACAGCTGAAGTCTCTTCAATGCCTGCCTGCAAATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGACTCCTGGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR TCA 90 bp | GCTCTACAGCTTCTGTATCATCACCTGAAATTTGCAGGCAGGCATTaGAGAGACTTCAGCTGTTACAATACTTTTTATTCCCAAGTTCGA | + |
|
Preference number: 1 (lower is better) Translates to: ALQLLYHHLKFAGRH*RDFSCYNTFYSQVR Trigger: TCGAACTTGGGAATAAAAAGTATTGTAACAGCTGAAGTCTCTTCAATGCCTGCCTGCAAATTTCAGGTGATGATACAGAAGCTGTAGAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR TCA 90 bp | AGACCTTGCTGTGTTTTTCACTCTGAGAATGTTTTCCGCATCATCTaGTGGAGTTCCATGTATTCATCAAAGGCAATAACAGCATGCTGT | + |
|
Preference number: 1 (lower is better) Translates to: RPCCVFHSENVFRII*WSSMYSSKAITACC Trigger: ACAGCATGCTGTTATTGCCTTTGATGAATACATGGAACTCCATCAGATGATGCGGAAAACATTCTCAGAGTGAAAAACACAGCAAGGTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR-3UTR TCA 90 bp | TCTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTGAAATTCTGCAGACAGCTGAATaGGTAGTCGAAATTTGTTGT | + |
|
Preference number: 2 (lower is better) Translates to: SAQESPARSTASVSSPEILQTAE*VVEICC Trigger: ACAACAAATTTCGACTACTCATTCAGCTGTCTGCAG...AATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGACTCCTGGGCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR-3UTR TCA 90 bp | TCTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTGAAATTTTTCCTGCAGACAGCTaGATGAGTAGTCGAAATTTG | + |
|
Preference number: 2 (lower is better) Translates to: SAQESPARSTASVSSPEIFPADS*MSSRNL Trigger: CAAATTTCGACTACTCATTCAGCTGTCTGCAGGAAA...AATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGACTCCTGGGCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR-3UTR GCA 90 bp | TCTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTGAAATTAGTATGATGAGACCTTaGTGTGTTTTTCACTCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: SAQESPARSTASVSSPEISMMRP*CVFHSE Trigger: CTCAGAGTGAAAAACACAGCAAGGTCTCATCATACT...AATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGACTCCTGGGCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR-3UTR GCA 90 bp | TCTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTGAAATTTTCATCCTTGAACCTTaGAGTATCTTTCGTAAACCT | + |
|
Preference number: 2 (lower is better) Translates to: SAQESPARSTASVSSPEIFILEP*SIFRKP Trigger: AGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAA...AATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGACTCCTGGGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR CAA 90 bp | CGCTCTACAGCTTCTGTATCATCACCTGAAATTTGCAGGCAGGCATaGAAGAGACTTCAGCTGTTACAATACTTTTTATTCCCAAGTTCG | + |
|
Preference number: 2 (lower is better) Translates to: RSTASVSSPEICRQA*KRLQLLQYFLFPSS Trigger: CGAACTTGGGAATAAAAAGTATTGTAACAGCTGAAGTCTCTTCAATGCCTGCCTGCAAATTTCAGGTGATGATACAGAAGCTGTAGAGCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR-3UTR TCA 90 bp | CTGAAATCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTGTCTAATTCATCCTTaGACCTTGCAGTATCTTTCG | + |
|
Preference number: 2 (lower is better) Translates to: LKSLNRSVSFCHGQRTCVCLIHP*TLQYLS Trigger: CGAAAGATACTGCAAGGTTCAAGGATGAATTAGACA...GACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGATTTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR-3UTR CCA 90 bp | TCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTCACCTTCCATTTTCCTaGAAACACTTTGTAGCAGAT | + |
|
Preference number: 2 (lower is better) Translates to: SLNRSVSFCHGQRTCVYFHLPFS*KHFVAD Trigger: ATCTGCTACAAAGTGTTTCCAGGAAAATGGAAGGTG...AAAGTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR-3UTR TCA 90 bp | TCGAAATTTGTTGTCCTGAAGTACATATATGCCCTGATGATTTGTCCTCAGATTTGTCTAATTCATCCTTaGACCTTGCAGTATCTTTCG | + |
|
Preference number: 2 (lower is better) Translates to: SKFVVLKYIYALMICPQICLIHP*TLQYLS Trigger: CGAAAGATACTGCAAGGTTCAAGGATGAATTAGACA...AATCTGAGGACAAATCATCAGGGCATATATGTACTTCAGGACAACAAATTTCGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR-3UTR TCA 90 bp | AACTTCATGATGTCTAATTCATCCTTGAACCTTGCAGTATCTTTCGTAAACCTTCTGCAGACAGCTGAATaGGTAGTCGAAATTTGTTGT | + |
|
Preference number: 2 (lower is better) Translates to: NFMMSNSSLNLAVSFVNLLQTAE*VVEICC Trigger: ACAACAAATTTCGACTACTCATTCAGCTGTCTGCAG...AAGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAATTAGACATCATGAAGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR-3UTR GCA 90 bp | GACTTCAGCTGTTACAATACTTTTTATTCCCAAGTTCGACAAACCACCTCTGATTTCATCCTTGAACCTTaGAGTATCTTTCGTAAACCT | + |
|
Preference number: 2 (lower is better) Translates to: DFSCYNTFYSQVRQTTSDFILEP*SIFRKP Trigger: AGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAA...ATCAGAGGTGGTTTGTCGAACTTGGGAATAAAAAGTATTGTAACAGCTGAAGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR CAA 90 bp | GTCCAAAAATCTTTACAGATGAACTTCATGATGTCTAATTCATCCTaGAACCTTGCAGTATCTTTCGTAAACCTTTCTATCAGTCCTTGC | + |
|
Preference number: 2 (lower is better) Translates to: VQKSLQMNFMMSNSS*NLAVSFVNLSISPC Trigger: GCAAGGACTGATAGAAAGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAATTAGACATCATGAAGTTCATCTGTAAAGATTTTTGGAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR-3UTR TCA 90 bp | AACTTCATGATGTCTAATTCATCCTTGAACCTTGCAGTATCTTTCGTAAACCTTCTGTGTTTTTCACTCTaGGAATGTTTTCCGCATCAT | + |
|
Preference number: 2 (lower is better) Translates to: NFMMSNSSLNLAVSFVNLLCFSL*ECFPHH Trigger: ATGATGCGGAAAACATTCTCAGAGTGAAAAACACAG...AAGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAATTAGACATCATGAAGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR TCA 72 bp | GTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTaGAATTTGCAGGCAGGCATTGAAGAGACTTCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: VASSLYSFCIIT*NLQAGIEETSA Trigger: AGCTGAAGTCTCTTCAATGCCTGCCTGCAAATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR GCA 72 bp | CTTGCAGTATCTTTCGTAAACCTTTCTATCAGTCCTTaGCCCACTCGGAACCCCATGCTCTCCAGCTTAGTA | + |
|
Preference number: 3 (lower is better) Translates to: LAVSFVNLSISP*PTRNPMLSSLV Trigger: TACTAAGCTGGAGAGCATGGGGTTCCGAGTGGGGCAAGGACTGATAGAAAGGTTTACGAAAGATACTGCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR-3UTR CAA 90 bp | TCATCACCTGAAATTTGCAGGCAGGCATTGAAGAGACTTCAGCTGTTACAATACATGTCTAATTCATCCTaGAACCTTGCAGTATCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: SSPEICRQALKRLQLLQYMSNSS*NLAVSF Trigger: GAAAGATACTGCAAGGTTCAAGGATGAATTAGACAT...GTATTGTAACAGCTGAAGTCTCTTCAATGCCTGCCTGCAAATTTCAGGTGATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR-3UTR CAA 90 bp | AATGAAGAGCCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAATGTCTAATTCATCCTaGAACCTTGCAGTATCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: NEEPCILVSSSLKSLNRSMSNSS*NLAVSF Trigger: GAAAGATACTGCAAGGTTCAAGGATGAATTAGACAT...TGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGGCTCTTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| 3UTR TCA 72 bp | TGTGTTTTTCACTCTGAGAATGTTTTCCGCATCATCTaGTGGAGTTCCATGTATTCATCAAAGGCAATAACA | + |
|
Preference number: 3 (lower is better) Translates to: CVFHSENVFRII*WSSMYSSKAIT Trigger: TGTTATTGCCTTTGATGAATACATGGAACTCCATCAGATGATGCGGAAAACATTCTCAGAGTGAAAAACACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS-3UTR GCA 90 bp | CTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTGAAATTTTTTTCCACTTCCCCCTaGTCGGCGGACTTGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: LPRSRQLALQLLYHHLKFFSTSP*SADLYT Trigger: AGTGTACAAGTCCGCCGAGCAGGGGGAAGTGGAAAA...AAATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGACTCCTGGGCAG 52% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000218799.2 |
||
| 3UTR CAA 72 bp | CCTTGCAGTATCTTTCGTAAACCTTTCTATCAGTCCTaGCCCCACTCGGAACCCCATGCTCTCCAGCTTAGT | + |
|
Preference number: 4 (lower is better) Translates to: PCSIFRKPFYQS*PHSEPHALQLS Trigger: ACTAAGCTGGAGAGCATGGGGTTCCGAGTGGGGCAAGGACTGATAGAAAGGTTTACGAAAGATACTGCAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS-3UTR CCA 90 bp | TCTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTGAAATTGACACCATCTCGTTATaGAGAAGCAAAAACAACGCC | + |
|
Preference number: 4 (lower is better) Translates to: SAQESPARSTASVSSPEIDTISL*RSKNNA Trigger: GGCGTTGTTTTTGCTTCTCCATAACGAGATGGTGTC...AATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGACTCCTGGGCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| CDS-3UTR GCA 90 bp | GCTGTGTTTTTCACTCTGAGAATGTTTTCCGCATCATCTGATGGAGTTCCATGTGAATGCACTTCCCCCTaGTCGGCGGACTTGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: AVFFTLRMFSASSDGVPCECTSP*SADLYT Trigger: AGTGTACAAGTCCGCCGAGCAGGGGGAAGTGCATTC...ACATGGAACTCCATCAGATGATGCGGAAAACATTCTCAGAGTGAAAAACACAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS-3UTR GCA 90 bp | AATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTGATTTGATGCCCACTTCCCCCTaGTCGGCGGACTTGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: NRSVSFCHGQRTCVYFDLMPTSP*SADLYT Trigger: AGTGTACAAGTCCGCCGAGCAGGGGGAAGTGGGCAT...CAAATCAAAGTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218686.2 |
||
| CDS-3UTR GCA 90 bp | AAATCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTTCCACTTCCCCCTaGTCGGCGGACTTGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: KSLNRSVSFCHGQRTCVYFSTSP*SADLYT Trigger: AGTGTACAAGTCCGCCGAGCAGGGGGAAGTGGAAAA...GTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| CDS-3UTR GCA 90 bp | TCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTTTTTCCACTTCCCCCTaGTCGGCGGACTTGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: SLNRSVSFCHGQRTCVYFFSTSP*SADLYT Trigger: AGTGTACAAGTCCGCCGAGCAGGGGGAAGTGGAAAA...AAAGTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGA 47% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| CDS-3UTR TCA 90 bp | GAGCCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGTTTTGCAGGCAGGCATTaGAGAGACTTCAGCTGTTAC | + |
|
Preference number: 4 (lower is better) Translates to: EPCILVSSSLKSLNRSVSFAGRH*RDFSCY Trigger: GTAACAGCTGAAGTCTCTTCAATGCCTGCCTGCAAA...ACTGACTGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000218686.2 |
||
| CDS-3UTR CCA 90 bp | CCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGTTTCAGTCTCAGGTCTCCTTaGAGATCTCTGAAGATGAGG | + |
|
Preference number: 4 (lower is better) Translates to: PCILVSSSLKSLNRSVSFSLRSP*RSLKMR Trigger: CCTCATCTTCAGAGATCTCCAAGGAGACCTGAGACT...GAAACTGACTGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS-3UTR TCA 90 bp | CTGAAATCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCCTGCAGACAGCTGAATaGGTAGTCGAAATTTGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LKSLNRSVSFCHGQRTCVLQTAE*VVEICC Trigger: ACAACAAATTTCGACTACTCATTCAGCTGTCTGCAG...GACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGATTTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 ENSMUST00000218686.2 |
||
| CDS-3UTR TCA 90 bp | CTGAAATCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTTTCCTGCAGACAGCTaGATGAGTAGTCGAAATTTG | + |
|
Preference number: 4 (lower is better) Translates to: LKSLNRSVSFCHGQRTCVFPADS*MSSRNL Trigger: CAAATTTCGACTACTCATTCAGCTGTCTGCAGGAAA...GACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGATTTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 ENSMUST00000218686.2 |
||
| CDS-3UTR TCA 90 bp | AATGAAGAGCCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCATTTGCAGGCAGGCATTaGAGAGACTTCAGCTGTTAC | + |
|
Preference number: 4 (lower is better) Translates to: NEEPCILVSSSLKSLNRSFAGRH*RDFSCY Trigger: GTAACAGCTGAAGTCTCTTCAATGCCTGCCTGCAAA...TGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGGCTCTTCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000218686.2 |
||
| CDS-3UTR CCA 90 bp | TCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTGACACCATCTCGTTATaGAGAAGCAAAAACAACGCC | + |
|
Preference number: 4 (lower is better) Translates to: SLNRSVSFCHGQRTCVYFDTISL*RSKNNA Trigger: GGCGTTGTTTTTGCTTCTCCATAACGAGATGGTGTC...AAAGTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000021380.10 ENSMUST00000217660.2 ENSMUST00000217863.2 ENSMUST00000218686.2 |
||
| CDS-3UTR CCA 90 bp | CCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGTTTCGACACCATCTCGTTATaGAGAAGCAAAAACAACGCC | + |
|
Preference number: 4 (lower is better) Translates to: PCILVSSSLKSLNRSVSFDTISL*RSKNNA Trigger: GGCGTTGTTTTTGCTTCTCCATAACGAGATGGTGTC...GAAACTGACTGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000021380.10 ENSMUST00000217660.2 ENSMUST00000217863.2 ENSMUST00000218686.2 |
||
| CDS-3UTR TCA 90 bp | GAGCCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGTTGTCTAATTCATCCTTaGACCTTGCAGTATCTTTCG | + |
|
Preference number: 4 (lower is better) Translates to: EPCILVSSSLKSLNRSVSCLIHP*TLQYLS Trigger: CGAAAGATACTGCAAGGTTCAAGGATGAATTAGACA...ACTGACTGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| CDS-3UTR TCA 90 bp | AAATCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACCTGCAGACAGCTGAATaGGTAGTCGAAATTTGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: KSLNRSVSFCHGQRTCVYLQTAE*VVEICC Trigger: ACAACAAATTTCGACTACTCATTCAGCTGTCTGCAG...GTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 ENSMUST00000218686.2 |
||
| CDS-3UTR CCA 90 bp | AATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTGATTTGGACACCATCTCGTTATaGAGAAGCAAAAACAACGCC | + |
|
Preference number: 4 (lower is better) Translates to: NRSVSFCHGQRTCVYFDLDTISL*RSKNNA Trigger: GGCGTTGTTTTTGCTTCTCCATAACGAGATGGTGTC...CAAATCAAAGTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000021380.10 ENSMUST00000217660.2 ENSMUST00000217863.2 ENSMUST00000218686.2 |
||
| CDS-3UTR TCA 90 bp | TCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTTGTCTAATTCATCCTTaGACCTTGCAGTATCTTTCG | + |
|
Preference number: 4 (lower is better) Translates to: SLNRSVSFCHGQRTCVYFCLIHP*TLQYLS Trigger: CGAAAGATACTGCAAGGTTCAAGGATGAATTAGACA...AAAGTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| CDS-3UTR TCA 90 bp | AAATCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACCGAAATTTGTTGTCCTaGAGTACATATATGCCCACT | + |
|
Preference number: 4 (lower is better) Translates to: KSLNRSVSFCHGQRTCVYRNLLS*STYMPT Trigger: AGTGGGCATATATGTACTTCAGGACAACAAATTTCG...GTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218686.2 |
||
| CDS-3UTR GCA 90 bp | AATGAAGAGCCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCATTCATCCTTGAACCTTaGAGTATCTTTCGTAAACCT | + |
|
Preference number: 4 (lower is better) Translates to: NEEPCILVSSSLKSLNRSFILEP*SIFRKP Trigger: AGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAA...TGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGGCTCTTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021380.10 |
||
| CDS-3UTR GCA 90 bp | AATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTGATTTGTTCATCCTTGAACCTTaGAGTATCTTTCGTAAACCT | + |
|
Preference number: 4 (lower is better) Translates to: NRSVSFCHGQRTCVYFDLFILEP*SIFRKP Trigger: AGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAA...CAAATCAAAGTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| 3UTR CAA 72 bp | GCTTCTGTATCATCACCTGAAATTTGCAGGCAGGCATaGAAGAGACTTCAGCTGTTACAATACTTTTTATTC | + |
|
Preference number: 4 (lower is better) Translates to: ASVSSPEICRQA*KRLQLLQYFLF Trigger: GAATAAAAAGTATTGTAACAGCTGAAGTCTCTTCAATGCCTGCCTGCAAATTTCAGGTGATGATACAGAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000217660.2 ENSMUST00000218799.2 |
||
| 3UTR CAA 72 bp | TCTTTACAGATGAACTTCATGATGTCTAATTCATCCTaGAACCTTGCAGTATCTTTCGTAAACCTAAGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: SLQMNFMMSNSS*NLAVSFVNLRR Trigger: TCTTCTTAGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAATTAGACATCATGAAGTTCATCTGTAAAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218799.2 |
||
| 3UTR CAA 72 bp | TCTTTACAGATGAACTTCATGATGTCTAATTCATCCTaGAACCTTGCAGTATCTTTCGTAAACCTTTCTATC | + |
|
Preference number: 4 (lower is better) Translates to: SLQMNFMMSNSS*NLAVSFVNLSI Trigger: GATAGAAAGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAATTAGACATCATGAAGTTCATCTGTAAAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS CCA 90 bp | GGTGATGAGCTGCACCATCACCGTCAGCACCTCTGGGTCCGGCCATaGAATGCACTTCCCCCTGCTCGGCGGACTTGTACACTCCGGACA | + |
|
Preference number: 5 (lower is better) Translates to: GDELHHHRQHLWVRP*NALPPARRTCTLRT Trigger: TGTCCGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGCATTCCATGGCCGGACCCAGAGGTGCTGACGGTGATGGTGCAGCTCATCACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS GCA 90 bp | TCACCGTCAGCACCTCTGGGTCCGGCCATGGAATGCACTTCCCCCTaGTCGGCGGACTTGTACACTCCGGACACCATCTCGTTATGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: SPSAPLGPAMECTSP*SADLYTPDTISLWR Trigger: TCTCCATAACGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGCATTCCATGGCCGGACCCAGAGGTGCTGACGGTGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS-3UTR CAA 90 bp | TCTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTCTGTATCATCACCTGAAATTGAGTCTCAGGTCTCCTaGGAGATCTCTGAAGATGAG | + |
|
Preference number: 5 (lower is better) Translates to: SAQESPARSTASVSSPEIESQVS*EISEDE Trigger: CTCATCTTCAGAGATCTCCAAGGAGACCTGAGACTC...AATTTCAGGTGATGATACAGAAGCTGTAGAGCGAGCTGGCGACTCCTGGGCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS-3UTR CAA 90 bp | TCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACTTTCCTTTCTATCAGTCCTaGCCCCACTCGGAACCCCAT | + |
|
Preference number: 5 (lower is better) Translates to: SLNRSVSFCHGQRTCVYFPFYQS*PHSEPH Trigger: ATGGGGTTCCGAGTGGGGCAAGGACTGATAGAAAGG...AAAGTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| CDS-3UTR CAA 90 bp | AAATCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACCCTTTCTATCAGTCCTaGCCCCACTCGGAACCCCAT | + |
|
Preference number: 5 (lower is better) Translates to: KSLNRSVSFCHGQRTCVYPFYQS*PHSEPH Trigger: ATGGGGTTCCGAGTGGGGCAAGGACTGATAGAAAGG...GTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| CDS-3UTR CAA 90 bp | CCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGTTTCATTTGCAGGCAGGCATaGAAGAGACTTCAGCTGTTA | + |
|
Preference number: 5 (lower is better) Translates to: PCILVSSSLKSLNRSVSFICRQA*KRLQLL Trigger: TAACAGCTGAAGTCTCTTCAATGCCTGCCTGCAAAT...GAAACTGACTGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000218686.2 |
||
| CDS-3UTR CAA 90 bp | GAGCCTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGTATGTCTAATTCATCCTaGAACCTTGCAGTATCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: EPCILVSSSLKSLNRSVSMSNSS*NLAVSF Trigger: GAAAGATACTGCAAGGTTCAAGGATGAATTAGACAT...ACTGACTGACCTATTCAGTGATTTCAGAGAACTAGACACCAAGATGCAAGGCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| CDS-3UTR CAA 90 bp | AAATCACTGAATAGGTCAGTCAGTTTCTGTCATGGTCAAAGGACCTGTGTCTACATGTCTAATTCATCCTaGAACCTTGCAGTATCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: KSLNRSVSFCHGQRTCVYMSNSS*NLAVSF Trigger: GAAAGATACTGCAAGGTTCAAGGATGAATTAGACAT...GTAGACACAGGTCCTTTGACCATGACAGAAACTGACTGACCTATTCAGTGATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 |
||
| CDS GCA 72 bp | GCACCTCTGGGTCCGGCCATGGAATGCACTTCCCCCTaGTCGGCGGACTTGTACACTCCGGACACCATCTCG | + |
|
Preference number: 6 (lower is better) Translates to: APLGPAMECTSP*SADLYTPDTIS Trigger: CGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGCATTCCATGGCCGGACCCAGAGGTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS GCA 72 bp | CCATCACCGTCAGCACCTCTGGGTCCGGCCATGGAATaGACTTCCCCCTGCTCGGCGGACTTGTACACTCCG | + |
|
Preference number: 6 (lower is better) Translates to: PSPSAPLGPAME*TSPCSADLYTP Trigger: CGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGCATTCCATGGCCGGACCCAGAGGTGCTGACGGTGATGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS CCA 72 bp | GAGGGTGATGAGCTGCACCATCACCGTCAGCACCTCTaGGTCCGGCCATGGAATGCACTTCCCCCTGCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: EGDELHHHRQHL*VRPWNALPPAR Trigger: CCGAGCAGGGGGAAGTGCATTCCATGGCCGGACCCAGAGGTGCTGACGGTGATGGTGCAGCTCATCACCCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS CCA 72 bp | CTGCACCATCACCGTCAGCACCTCTGGGTCCGGCCATaGAATGCACTTCCCCCTGCTCGGCGGACTTGTACA | + |
|
Preference number: 6 (lower is better) Translates to: LHHHRQHLWVRP*NALPPARRTCT Trigger: TGTACAAGTCCGCCGAGCAGGGGGAAGTGCATTCCATGGCCGGACCCAGAGGTGCTGACGGTGATGGTGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS CAA 72 bp | CCGGCCATGGAATGCACTTCCCCCTGCTCGGCGGACTaGTACACTCCGGACACCATCTCGTTATGGAGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: PAMECTSPCSAD*YTPDTISLWRS Trigger: GCTTCTCCATAACGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGCATTCCATGGCCGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS CAA 90 bp | CCTCTGGGTCCGGCCATGGAATGCACTTCCCCCTGCTCGGCGGACTaGTACACTCCGGACACCATCTCGTTATGGAGAAGCAAAAACAAC | + |
|
Preference number: 6 (lower is better) Translates to: PLGPAMECTSPCSAD*YTPDTISLWRSKNN Trigger: GTTGTTTTTGCTTCTCCATAACGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGCATTCCATGGCCGGACCCAGAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000217660.2 |
||
| CDS CAA 72 bp | CACCTTCCATTTTCCACTTCCCCCTGCTCGGCGGACTaGTACACTCCGGACACCATCTCGTTATGGAGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: HLPFSTSPCSAD*YTPDTISLWRS Trigger: GCTTCTCCATAACGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGGAAAATGGAAGGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 ENSMUST00000218799.2 |
||
| CDS GCA 72 bp | AGCTTAGTAACACACCTTCCATTTTCCACTTCCCCCTaGTCGGCGGACTTGTACACTCCGGACACCATCTCG | + |
|
Preference number: 6 (lower is better) Translates to: SLVTHLPFSTSP*SADLYTPDTIS Trigger: CGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGGAAAATGGAAGGTGTGTTACTAAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000021380.10 ENSMUST00000217863.2 ENSMUST00000218799.2 |
||
| CDS CAA 72 bp | AGTACATATATGCCCACTTCCCCCTGCTCGGCGGACTaGTACACTCCGGACACCATCTCGTTATGGAGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: STYMPTSPCSAD*YTPDTISLWRS Trigger: GCTTCTCCATAACGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGCAGGGGGAAGTGGGCATATATGTACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218686.2 |
||