Pregenerated sensors for TRAPPC6A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002043Ensembl transcript IDs: ENSMUST00000002112.15, ENSMUST00000108455.8, ENSMUST00000135972.2, ENSMUST00000136873.8, ENSMUST00000147114.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTGGAAGCCCAGTGTATGGAGGGCGCCGCACAGAAGGCCGCAGGTaGAGGCCAGGAACTTGGGGGCTTCCTCTAGATACTGTGGCCCCG | + |
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Preference number: 1 (lower is better) Translates to: SGSPVYGGRRTEGRR*RPGTWGLPLDTVAP Trigger: CGGGGCCACAGTATCTAGAGGAAGCCCCCAAGTTCCTGGCCTTCACCTGCGGCCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCAGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR TCA 90 bp | TGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATTCCCTTGTCTaGAGCACATGTGACCTCCCCAGAGCCTGTGAGCTCCAGCTTCAA | + |
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Preference number: 1 (lower is better) Translates to: WSHLPGPSRPFHSLV*STCDLPRACELQLQ Trigger: TTGAAGCTGGAGCTCACAGGCTCTGGGGAGGTCACATGTGCTTCAGACAAGGGAATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR TCA 90 bp | GAGCCTGTGAGCTCCAGCTTCAAGGCGACCTGCAAAGGTGAGCAGTaGGGCAGGGTCAGGTGCCACATTCCGAGGCTAAGCTTAGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: EPVSSSFKATCKGEQ*GRVRCHIPRLSLGK Trigger: CTTCCCTAAGCTTAGCCTCGGAATGTGGCACCTGACCCTGCCTCACTGCTCACCTTTGCAGGTCGCCTTGAAGCTGGAGCTCACAGGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR GCA 90 bp | AGGGGGAAGCTGTTGTCCTGGTGGTTGGTGCGGAGTCCGTCCATGTaGTTCTGGAACATGGCGGCCCACAGATCTCTGCACAGGAACTTG | + |
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Preference number: 1 (lower is better) Translates to: RGKLLSWWLVRSPSM*FWNMAAHRSLHRNL Trigger: CAAGTTCCTGTGCAGAGATCTGTGGGCCGCCATGTTCCAGAAGCACATGGACGGACTCCGCACCAACCACCAGGACAACAGCTTCCCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000136873.8 |
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| 3UTR-3UTR TCA 90 bp | GACCAGGCTCTGGAAGCCCAGTGTATGGAGGGCGCCGCACAGAAGGCCGCAGGTCCTCCCCAGAGCCTGTaGGCTCCAGCTTCAAGGCGA | + |
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Preference number: 2 (lower is better) Translates to: DQALEAQCMEGAAQKAAGPPQSL*APASRR Trigger: TCGCCTTGAAGCTGGAGCTCACAGGCTCTGGGGAGG...ACCTGCGGCCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCAGAGCCTGGTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | GACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATGCCCCGAGCCCATGGTaGCAAGGAGGGGGAAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: DLELRGWSHLPGPSRPFHAPSPW*QGGGSC Trigger: ACAGCTTCCCCCTCCTTGTCACCATGGGCTCGGGGC...ATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | ATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTGCAAAGGTGAGCAGTaGGGCAGGGTCAGGTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: MLTWNSGDGPTSRDPPGPCKGEQ*GRVRCH Trigger: GTGGCACCTGACCCTGCCTCACTGCTCACCTTTGCA...AGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGCTCTGGAAGCCCAGTGTATGGAGGGCGCCGCACAGAAGGCCGCAGGTGAATGCAAAGGTGAGCAGTaGGGCAGGGTCAGGTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: QALEAQCMEGAAQKAAGECKGEQ*GRVRCH Trigger: GTGGCACCTGACCCTGCCTCACTGCTCACCTTTGCA...TTCACCTGCGGCCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCAGAGCCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | GATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATTCCCTTGTCTGAAGCAGGCGACCTGCAAAGGTaGGCAGTGAGGCAGGGTCAG | + |
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Preference number: 2 (lower is better) Translates to: DGPTSRDPPGPFIPLSEAGDLQR*AVRQGQ Trigger: CTGACCCTGCCTCACTGCTCACCTTTGCAGGTCGCC...TGCTTCAGACAAGGGAATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | TGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCTCCCCAGAGCCTGTaGGCTCCAGCTTCAAGGCGA | + |
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Preference number: 2 (lower is better) Translates to: CPSMLTWNSGDGPTSRDPPPQSL*APASRR Trigger: TCGCCTTGAAGCTGGAGCTCACAGGCTCTGGGGAGG...AGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR CCA 90 bp | GACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATTGGAAGCCCAGTGTATaGAGGGCGCCGCACAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: DLELRGWSHLPGPSRPFHWKPSV*RAPHRR Trigger: CCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCA...ATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | TGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTTGCAAAGGTGAGCAGTaGGGCAGGGTCAGGTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: CPSMLTWNSGDGPTSRDPCKGEQ*GRVRCH Trigger: GTGGCACCTGACCCTGCCTCACTGCTCACCTTTGCA...AGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR CAA 90 bp | AACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCATGCTGACTaGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCC | + |
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Preference number: 2 (lower is better) Translates to: NICHLGDALMSLHAD*ELRGWSHLPGPSRP Trigger: GGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAGGGCATCACCCAGATGACAGATGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | GCCCTAATGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGTGCAAAGGTGAGCAGTaGGGCAGGGTCAGGTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: ALMSLHADLELRGWSHLPCKGEQ*GRVRCH Trigger: GTGGCACCTGACCCTGCCTCACTGCTCACCTTTGCA...CGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGGCAAGCCTGGGGTCTGGGGTCCTCAGGACTTCTGGATCACCACCTGGAACAAGCTGTTGTCCTGGTaGTTGGTGCGGAGTCCGTCC | + |
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Preference number: 2 (lower is better) Translates to: KGKPGVWGPQDFWITTWNKLLSW*LVRSPS Trigger: GGACGGACTCCGCACCAACCACCAGGACAACAGCTT...GTTCCAGGTGGTGATCCAGAAGTCCTGAGGACCCCAGACCCCAGGCTTGCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136873.8 |
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| 3UTR-3UTR TCA 90 bp | TTCATTCCCTTGTCTGAAGCACATGTGACCTCCCCAGAGCCTGTGAGCTCCAGCCCTCCCCAGAGCCTGTaGGCTCCAGCTTCAAGGCGA | + |
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Preference number: 2 (lower is better) Translates to: FIPLSEAHVTSPEPVSSSPPQSL*APASRR Trigger: TCGCCTTGAAGCTGGAGCTCACAGGCTCTGGGGAGG...GCTGGAGCTCACAGGCTCTGGGGAGGTCACATGTGCTTCAGACAAGGGAATGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTTGTCTGAAGCACATGTGACCTCCCCAGAGCCTGTGAGCTCCAGCTTCAAGCCCTCCATGCTGACTTaGAACTCAGGGGATGGTCCC | + |
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Preference number: 2 (lower is better) Translates to: PLSEAHVTSPEPVSSSFKPSMLT*NSGDGP Trigger: GGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGG...CTTGAAGCTGGAGCTCACAGGCTCTGGGGAGGTCACATGTGCTTCAGACAAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR CCA 90 bp | TTCATTCCCTTGTCTGAAGCACATGTGACCTCCCCAGAGCCTGTGAGCTCCAGCTGTGCTTCTGGAACATaGCGGCCCACAGATCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: FIPLSEAHVTSPEPVSSSCASGT*RPTDLC Trigger: GCAGAGATCTGTGGGCCGCCATGTTCCAGAAGCACA...GCTGGAGCTCACAGGCTCTGGGGAGGTCACATGTGCTTCAGACAAGGGAATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGGTGATGCCCTAATGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCTTTCATTCCCTTGTCTaGAGCACATGTGACCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: LGDALMSLHADLELRGWSFHSLV*STCDLP Trigger: GGGGAGGTCACATGTGCTTCAGACAAGGGAATGAAA...GGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAGGGCATCACCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR TCA 90 bp | TTCATTCCCTTGTCTGAAGCACATGTGACCTCCCCAGAGCCTGTGAGCTCCAGCTTTCATTCCCTTGTCTaGAGCACATGTGACCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: FIPLSEAHVTSPEPVSSSFHSLV*STCDLP Trigger: GGGGAGGTCACATGTGCTTCAGACAAGGGAATGAAA...GCTGGAGCTCACAGGCTCTGGGGAGGTCACATGTGCTTCAGACAAGGGAATGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR CCA 72 bp | ACGGAGGCGGTGACCAGGCTCTGGAAGCCCAGTGTATaGAGGGCGCCGCACAGAAGGCCGCAGGTGAAGGCC | + |
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Preference number: 3 (lower is better) Translates to: TEAVTRLWKPSV*RAPHRRPQVKA Trigger: GGCCTTCACCTGCGGCCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCAGAGCCTGGTCACCGCCTCCGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR CAA 90 bp | GACCAGGCTCTGGAAGCCCAGTGTATGGAGGGCGCCGCACAGAAGGCCGCAGGTAGGAGGGGGAAGCTGTaGTCCTGGTGGTTGGTGCGG | + |
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Preference number: 3 (lower is better) Translates to: DQALEAQCMEGAAQKAAGRRGKL*SWWLVR Trigger: CCGCACCAACCACCAGGACAACAGCTTCCCCCTCCT...ACCTGCGGCCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCAGAGCCTGGTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000136873.8 |
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| 3UTR-3UTR CAA 90 bp | GGGAAGGGCAAGCCTGGGGTCTGGGGTCCTCAGGACTTCTGGATCACCACCTGGTCCCTCCATGCTGACTaGGAACTCAGGGGATGGTCC | + |
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Preference number: 3 (lower is better) Translates to: GKGKPGVWGPQDFWITTWSLHAD*ELRGWS Trigger: GGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGA...CCAGGTGGTGATCCAGAAGTCCTGAGGACCCCAGACCCCAGGCTTGCCCTTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR TCA 72 bp | GGGCTTCCTCTAGATACTGTGGCCCCGAGCCCATGGTaGCAAGGAGGGGGAAGCTGTTGTCCTGGTGGTTGG | + |
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Preference number: 3 (lower is better) Translates to: GLPLDTVAPSPW*QGGGSCCPGGW Trigger: CCAACCACCAGGACAACAGCTTCCCCCTCCTTGTCACCATGGGCTCGGGGCCACAGTATCTAGAGGAAGCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136873.8 |
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| 3UTR CCA 72 bp | CTAATGTCCCTCCATGCTGACTTGGAACTCAGGGGATaGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCAT | + |
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Preference number: 3 (lower is better) Translates to: LMSLHADLELRG*SHLPGPSRPFH Trigger: ATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR CCA 72 bp | GAGCCCATGGTGACAAGGAGGGGGAAGCTGTTGTCCTaGTGGTTGGTGCGGAGTCCGTCCATGTGCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: EPMVTRRGKLLS*WLVRSPSMCFW Trigger: CCAGAAGCACATGGACGGACTCCGCACCAACCACCAGGACAACAGCTTCCCCCTCCTTGTCACCATGGGCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000136873.8 |
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| 3UTR CCA 72 bp | CCGAGGCTAAGCTTAGGGAAGGGCAAGCCTGGGGTCTaGGGTCCTCAGGACTTCTGGATCACCACCTGGAAC | + |
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Preference number: 3 (lower is better) Translates to: PRLSLGKGKPGV*GPQDFWITTWN Trigger: GTTCCAGGTGGTGATCCAGAAGTCCTGAGGACCCCAGACCCCAGGCTTGCCCTTCCCTAAGCTTAGCCTCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR CAA 90 bp | GACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATGGCCCTTTCATTCCCTaGTCTGAAGCACATGTGACC | + |
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Preference number: 3 (lower is better) Translates to: DLELRGWSHLPGPSRPFHGPFIP*SEAHVT Trigger: GGTCACATGTGCTTCAGACAAGGGAATGAAAGGGCC...ATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR CAA 90 bp | GTCAGGTGCCACATTCCGAGGCTAAGCTTAGGGAAGGGCAAGCCTGGGGTCTGGTCCCTCCATGCTGACTaGGAACTCAGGGGATGGTCC | + |
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Preference number: 3 (lower is better) Translates to: VRCHIPRLSLGKGKPGVWSLHAD*ELRGWS Trigger: GGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGA...CCAGACCCCAGGCTTGCCCTTCCCTAAGCTTAGCCTCGGAATGTGGCACCTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR-3UTR CAA 90 bp | GAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATTCCCTTTCTCTGCACAGGAACTaGAGGGCATCTAACTCCTCC | + |
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Preference number: 3 (lower is better) Translates to: ELRGWSHLPGPSRPFHSLSLHRN*RASNSS Trigger: GGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAGA...AAGGGAATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR TCA 72 bp | AGCTCCAGCTTCAAGGCGACCTGCAAAGGTGAGCAGTaGGGCAGGGTCAGGTGCCACATTCCGAGGCTAAGC | + |
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Preference number: 3 (lower is better) Translates to: SSSFKATCKGEQ*GRVRCHIPRLS Trigger: GCTTAGCCTCGGAATGTGGCACCTGACCCTGCCTCACTGCTCACCTTTGCAGGTCGCCTTGAAGCTGGAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| 3UTR TCA 72 bp | GGGCTTCCTCTAGATACTGTGGCCCCGAGCCCATGGTaGCAAGGAGGGGGAAGCTGTTGTCCTGCAGCACAT | + |
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Preference number: 3 (lower is better) Translates to: GLPLDTVAPSPW*QGGGSCCPAAH Trigger: ATGTGCTGCAGGACAACAGCTTCCCCCTCCTTGTCACCATGGGCTCGGGGCCACAGTATCTAGAGGAAGCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147114.2 |
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| 3UTR-3UTR CAA 90 bp | GTCCTGGTGGTTGGTGCGGAGTCCGTCCATGTGCTTCTGGAACATGGCGGCCCATCTCTGCACAGGAACTaGAGGGCATCTAACTCCTCC | + |
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Preference number: 3 (lower is better) Translates to: VLVVGAESVHVLLEHGGPSLHRN*RASNSS Trigger: GGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAGA...TGGGCCGCCATGTTCCAGAAGCACATGGACGGACTCCGCACCAACCACCAGGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136873.8 |
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| CDS-3UTR TCA 90 bp | ATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTGCCCCGAGCCCATGGTaGCAAGGAGGGGGAAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: MLTWNSGDGPTSRDPPGPAPSPW*QGGGSC Trigger: ACAGCTTCCCCCTCCTTGTCACCATGGGCTCGGGGC...AGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000002112.15 |
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| 3UTR CAA 72 bp | GGCCCCGAGCCCATGGTGACAAGGAGGGGGAAGCTGTaGTCCTGGTGGTTGGTGCGGAGTCCGTCCATGTGC | + |
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Preference number: 4 (lower is better) Translates to: GPEPMVTRRGKL*SWWLVRSPSMC Trigger: GCACATGGACGGACTCCGCACCAACCACCAGGACAACAGCTTCCCCCTCCTTGTCACCATGGGCTCGGGGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136873.8 |
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| CDS-3UTR GCA 90 bp | GCCCTAATGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGACAGGCGGGCAGGGATaGCACGGAGGCGGTGACCAG | + |
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Preference number: 4 (lower is better) Translates to: ALMSLHADLELRGWSHLPTGGQG*HGGGDQ Trigger: CTGGTCACCGCCTCCGTGGCATCCCTGCCCGCCTGT...CGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 |
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| 3UTR CAA 72 bp | CCCACCTCCCGGGACCCTCCCGGCCCTTTCATTCCCTaGTCTGAAGCACATGTGACCTCCCCAGAGCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: PTSRDPPGPFIP*SEAHVTSPEPV Trigger: CACAGGCTCTGGGGAGGTCACATGTGCTTCAGACAAGGGAATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| CDS-3UTR TCA 90 bp | TCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATTCCCTTGTCTCTCTGCACAGGAACTTaGGGGCATCTAACTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: SGDGPTSRDPPGPFIPLSLCTGT*GHLTPP Trigger: GGGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAG...AGACAAGGGAATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 |
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| CDS-3UTR TCA 90 bp | CTAATGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGAACAGAAGGCCGCAGGTaGAGGCCAGGAACTTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: LMSLHADLELRGWSHLPGTEGRR*RPGTWG Trigger: CCCCCAAGTTCCTGGCCTTCACCTGCGGCCTTCTGT...TCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002112.15 |
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| CDS-3UTR CCA 90 bp | GACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATTGTGCTTCTGGAACATaGCGGCCCACAGATCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: DLELRGWSHLPGPSRPFHCASGT*RPTDLC Trigger: GCAGAGATCTGTGGGCCGCCATGTTCCAGAAGCACA...ATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 |
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| 3UTR CAA 72 bp | CATCTGGGTGATGCCCTAATGTCCCTCCATGCTGACTaGGAACTCAGGGGATGGTCCCACCTCCCGGGACCC | + |
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Preference number: 4 (lower is better) Translates to: HLGDALMSLHAD*ELRGWSHLPGP Trigger: GGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAGGGCATCACCCAGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| CDS-3UTR CCA 90 bp | CTAATGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGAGCGGTGACCAGGCTCTaGAAGCCCAGTGTATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LMSLHADLELRGWSHLPGAVTRL*KPSVWR Trigger: CCTCCATACACTGGGCTTCCAGAGCCTGGTCACCGC...TCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 |
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| CDS-3UTR CCA 90 bp | GCCCTAATGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCCACCTCCCGTGTGCTTCTGGAACATaGCGGCCCACAGATCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: ALMSLHADLELRGWSHLPCASGT*RPTDLC Trigger: GCAGAGATCTGTGGGCCGCCATGTTCCAGAAGCACA...CGGGAGGTGGGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAGGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 |
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| CDS-3UTR CCA 90 bp | CCCTTGTCTGAAGCACATGTGACCTCCCCAGAGCCTGTGAGCTCCAGCTTCAAGTGGAAGCCCAGTGTATaGAGGGCGCCGCACAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: PLSEAHVTSPEPVSSSFKWKPSV*RAPHRR Trigger: CCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCA...CTTGAAGCTGGAGCTCACAGGCTCTGGGGAGGTCACATGTGCTTCAGACAAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 |
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| CDS-3UTR GCA 90 bp | GTGACCTCCCCAGAGCCTGTGAGCTCCAGCTTCAAGGCGACCTGCAAAGGTGAGGCCACCATCTCGGTGTaGAGAAACTCGAATAGCACC | + |
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Preference number: 4 (lower is better) Translates to: VTSPEPVSSSFKATCKGEATISV*RNSNST Trigger: GGTGCTATTCGAGTTTCTGCACACCGAGATGGTGGC...CTCACCTTTGCAGGTCGCCTTGAAGCTGGAGCTCACAGGCTCTGGGGAGGTCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002112.15 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| CDS-3UTR TCA 90 bp | CTGGGTGATGCCCTAATGTCCCTCCATGCTGACTTGGAACTCAGGGGATGGTCCCTCTGCACAGGAACTTaGGGGCATCTAACTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: LGDALMSLHADLELRGWSLCTGT*GHLTPP Trigger: GGGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAG...GGACCATCCCCTGAGTTCCAAGTCAGCATGGAGGGACATTAGGGCATCACCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 |
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| 3UTR CAA 72 bp | ATGGTGACAAGGAGGGGGAAGCTGTTGTCCTGGTGGTaGGTGCGGAGTCCGTCCATGTGCTTCTGGAACATG | + |
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Preference number: 4 (lower is better) Translates to: MVTRRGKLLSWW*VRSPSMCFWNM Trigger: CATGTTCCAGAAGCACATGGACGGACTCCGCACCAACCACCAGGACAACAGCTTCCCCCTCCTTGTCACCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000136873.8 |
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| CDS-3UTR TCA 90 bp | CCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCATGCTGACACAGAAGGCCGCAGGTaGAGGCCAGGAACTTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: PLLNICHLGDALMSLHADTEGRR*RPGTWG Trigger: CCCCCAAGTTCCTGGCCTTCACCTGCGGCCTTCTGT...GTCAGCATGGAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 |
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| CDS-3UTR GCA 90 bp | CATGTGCTTCTGGAACATGGCGGCCCACAGATCTCTGCACAGGAACTTGAGGGCGCCACCATCTCGGTGTaGAGAAACTCGAATAGCACC | + |
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Preference number: 4 (lower is better) Translates to: HVLLEHGGPQISAQELEGATISV*RNSNST Trigger: GGTGCTATTCGAGTTTCTGCACACCGAGATGGTGGC...GCCCTCAAGTTCCTGTGCAGAGATCTGTGGGCCGCCATGTTCCAGAAGCACATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| CDS-3UTR TCA 90 bp | GAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCATGCTCCTCCCCAGAGCCTGTaGGCTCCAGCTTCAAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: EPLLNICHLGDALMSLHAPPQSL*APASRR Trigger: TCGCCTTGAAGCTGGAGCTCACAGGCTCTGGGGAGG...AGCATGGAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108455.8 |
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| CDS-3UTR CCA 90 bp | CCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCATGCTGACGCGGTGACCAGGCTCTaGAAGCCCAGTGTATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: PLLNICHLGDALMSLHADAVTRL*KPSVWR Trigger: CCTCCATACACTGGGCTTCCAGAGCCTGGTCACCGC...GTCAGCATGGAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 ENSMUST00000135972.2 |
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| CDS-3UTR TCA 90 bp | TTTGCACATAAAGAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGGCCCCGAGCCCATGGTaGCAAGGAGGGGGAAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: FAHKEPLLNICHLGDALMAPSPW*QGGGSC Trigger: ACAGCTTCCCCCTCCTTGTCACCATGGGCTCGGGGC...CATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTCTTTATGTGCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 |
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| CDS-3UTR CCA 90 bp | GAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCATGCTTGTGCTTCTGGAACATaGCGGCCCACAGATCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: EPLLNICHLGDALMSLHACASGT*RPTDLC Trigger: GCAGAGATCTGTGGGCCGCCATGTTCCAGAAGCACA...AGCATGGAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 ENSMUST00000135972.2 |
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| CDS-3UTR CCA 90 bp | GCACATAAAGAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCTGGAAGCCCAGTGTATaGAGGGCGCCGCACAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: AHKEPLLNICHLGDALMSWKPSV*RAPHRR Trigger: CCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCA...GGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTCTTTATGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 |
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| CDS-3UTR CCA 90 bp | AAAGAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCATGCGGTGACCAGGCTCTaGAAGCCCAGTGTATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: KEPLLNICHLGDALMSLHAVTRL*KPSVWR Trigger: CCTCCATACACTGGGCTTCCAGAGCCTGGTCACCGC...ATGGAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 ENSMUST00000135972.2 |
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| CDS-3UTR TCA 90 bp | CCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCATGCTGACTTTCATTCCCTTGTCTaGAGCACATGTGACCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: PLLNICHLGDALMSLHADFHSLV*STCDLP Trigger: GGGGAGGTCACATGTGCTTCAGACAAGGGAATGAAA...GTCAGCATGGAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108455.8 |
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| CDS-3UTR TCA 90 bp | CATAAAGAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCTCTGCACAGGAACTTaGGGGCATCTAACTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: HKEPLLNICHLGDALMSLLCTGT*GHLTPP Trigger: GGGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAG...GAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTCTTTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 ENSMUST00000135972.2 |
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| CDS-3UTR GCA 90 bp | GCACATAAAGAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCGCCACCATCTCGGTGTaGAGAAACTCGAATAGCACC | + |
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Preference number: 4 (lower is better) Translates to: AHKEPLLNICHLGDALMSATISV*RNSNST Trigger: GGTGCTATTCGAGTTTCTGCACACCGAGATGGTGGC...GGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTCTTTATGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| CDS-3UTR GCA 90 bp | CATAAAGAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCGCCACCATCTCGGTGTaGAGAAACTCGAATAGCACC | + |
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Preference number: 4 (lower is better) Translates to: HKEPLLNICHLGDALMSLATISV*RNSNST Trigger: GGTGCTATTCGAGTTTCTGCACACCGAGATGGTGGC...GAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTCTTTATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 ENSMUST00000136873.8 ENSMUST00000147114.2 |
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| CDS GCA 90 bp | CCAGAGCCTGTGAGCTCCAGCTTCAAGGCGACAGGCGGGCAGGGATaGCACGGAGGCGGTGACCAGGCTCTGGAAGCCCAGTGTATGGAG | + |
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Preference number: 5 (lower is better) Translates to: PEPVSSSFKATGGQG*HGGGDQALEAQCME Trigger: CTCCATACACTGGGCTTCCAGAGCCTGGTCACCGCCTCCGTGGCATCCCTGCCCGCCTGTCGCCTTGAAGCTGGAGCTCACAGGCTCTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108455.8 |
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| CDS TCA 90 bp | TCTGGAAGCCCAGTGTATGGAGGGCGCCGCACAGAAGGCCGCAGGTaGAGGCCAGGAACTGGTGGTTGGTGCGGAGTCCGTCCATGTGCT | + |
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Preference number: 5 (lower is better) Translates to: SGSPVYGGRRTEGRR*RPGTGGWCGVRPCA Trigger: AGCACATGGACGGACTCCGCACCAACCACCAGTTCCTGGCCTTCACCTGCGGCCTTCTGTGCGGCGCCCTCCATACACTGGGCTTCCAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135972.2 |
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| CDS-3UTR CAA 90 bp | GACTTGGAACTCAGGGGATGGTCCCACCTCCCGGGACCCTCCCGGCCCTTTCATTCTCTGCACAGGAACTaGAGGGCATCTAACTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: DLELRGWSHLPGPSRPFHSLHRN*RASNSS Trigger: GGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAGA...ATGAAAGGGCCGGGAGGGTCCCGGGAGGTGGGACCATCCCCTGAGTTCCAAGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000135972.2 |
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| CDS-3UTR CAA 90 bp | CCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCCTCCATGCTGACTCTCTGCACAGGAACTaGAGGGCATCTAACTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: PLLNICHLGDALMSLHADSLHRN*RASNSS Trigger: GGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAGA...GTCAGCATGGAGGGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 ENSMUST00000135972.2 |
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| CDS-3UTR CAA 90 bp | GCACATAAAGAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCCGGCCCTTTCATTCCCTaGTCTGAAGCACATGTGACC | + |
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Preference number: 5 (lower is better) Translates to: AHKEPLLNICHLGDALMSGPFIP*SEAHVT Trigger: GGTCACATGTGCTTCAGACAAGGGAATGAAAGGGCC...GGACATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTCTTTATGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108455.8 |
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| CDS-3UTR CAA 90 bp | TTTGCACATAAAGAACCTTTACTGAACATCTGTCATCTGGGTGATGCCCTAATGTCTCTGCACAGGAACTaGAGGGCATCTAACTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: FAHKEPLLNICHLGDALMSLHRN*RASNSS Trigger: GGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAGA...CATTAGGGCATCACCCAGATGACAGATGTTCAGTAAAGGTTCTTTATGTGCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 |
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| CDS GCA 72 bp | GTGAGCTCCAGCTTCAAGGCGACAGGCGGGCAGGGATaGCACGGAGGCGGTGACCAGGCTCTGGAAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: VSSSFKATGGQG*HGGGDQALEAQ Trigger: CTGGGCTTCCAGAGCCTGGTCACCGCCTCCGTGGCATCCCTGCCCGCCTGTCGCCTTGAAGCTGGAGCTCAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108455.8 |
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| CDS TCA 72 bp | CCAGTGTATGGAGGGCGCCGCACAGAAGGCCGCAGGTaGAGGCCAGGAACTGGTGGTTGGTGCGGAGTCCGT | + |
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Preference number: 6 (lower is better) Translates to: PVYGGRRTEGRR*RPGTGGWCGVR Trigger: ACGGACTCCGCACCAACCACCAGTTCCTGGCCTTCACCTGCGGCCTTCTGTGCGGCGCCCTCCATACACTGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135972.2 |
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| CDS GCA 72 bp | GCCAGGAACTGGTGGTTGGTGCGGAGTCCGTCCATGTaGTTCTGGAACATGGCGGCCCACAGATCTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: ARNWWLVRSPSM*FWNMAAHRSLH Trigger: GTGCAGAGATCTGTGGGCCGCCATGTTCCAGAAGCACATGGACGGACTCCGCACCAACCACCAGTTCCTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135972.2 |
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| CDS CAA 90 bp | ATGTGCTTCTGGAACATGGCGGCCCACAGATCTCTGCACAGGAACTaGAGGGCATCTAACTCCTCCCTAAAGGCCGGTGTCTCCAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: MCFWNMAAHRSLHRN*RASNSSLKAGVSRG Trigger: GCCCCTGGAGACACCGGCCTTTAGGGAGGAGTTAGATGCCCTCAAGTTCCTGTGCAGAGATCTGTGGGCCGCCATGTTCCAGAAGCACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002112.15 ENSMUST00000108455.8 ENSMUST00000135972.2 |
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