Pregenerated sensors for TRAPPC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032112Ensembl transcript IDs: ENSMUST00000034623.8, ENSMUST00000217163.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTAGGGCGTCCATTCCAGGTTCATCCTATGACCCAGGTCCAAAAGTaGCAGCCTTCTCTGCCACCTCTAGAGCTAGCTTCAGGTTTTGAT | + |
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Preference number: 1 (lower is better) Translates to: LGRPFQVHPMTQVQK*QPSLPPLELASGFD Trigger: ATCAAAACCTGAAGCTAGCTCTAGAGGTGGCAGAGAAGGCTGGCACTTTTGGACCTGGGTCATAGGATGAACCTGGAATGGACGCCCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| 3UTR TCA 90 bp | AAAGTGCCAGCCTTCTCTGCCACCTCTAGAGCTAGCTTCAGGTTTTaGTCAAACAGCTCGCATCTAGGTCAGACCCAGAAGACAAGAAAC | + |
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Preference number: 1 (lower is better) Translates to: KVPAFSATSRASFRF*SNSSHLGQTQKTRN Trigger: GTTTCTTGTCTTCTGGGTCTGACCTAGATGCGAGCTGTTTGATCAAAACCTGAAGCTAGCTCTAGAGGTGGCAGAGAAGGCTGGCACTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| 3UTR CCA 90 bp | AACGTGAAGCCTACGGAAACCCTGTGTCCTCAAGACAAACAGAGCTaGTCACTGCTGTCTTTCCCTAAAAGCAGTGCTTGGTCACACTTT | + |
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Preference number: 1 (lower is better) Translates to: NVKPTETLCPQDKQS*SLLSFPKSSAWSHF Trigger: AAAGTGTGACCAAGCACTGCTTTTAGGGAAAGACAGCAGTGACCAGCTCTGTTTGTCTTGAGGACACAGGGTTTCCGTAGGCTTCACGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| 3UTR GCA 90 bp | AGCCTACGGAAACCCTGTGTCCTCAAGACAAACAGAGCTGGTCACTaGTGTCTTTCCCTAAAAGCAGTGCTTGGTCACACTTTAAATGAC | + |
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Preference number: 1 (lower is better) Translates to: SLRKPCVLKTNRAGH*CLSLKAVLGHTLND Trigger: GTCATTTAAAGTGTGACCAAGCACTGCTTTTAGGGAAAGACAGCAGTGACCAGCTCTGTTTGTCTTGAGGACACAGGGTTTCCGTAGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| 3UTR CCA 90 bp | AACACAGCATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTaGTCTACCATTTTCAAGTATATTAGCAAGGCTGCTACAACAGGA | + |
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Preference number: 1 (lower is better) Translates to: NTAFEPRICHHHQAQ*STIFKYISKAATTG Trigger: TCCTGTTGTAGCAGCCTTGCTAATATACTTGAAAATGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATGCTGTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| 3UTR CAA 90 bp | TGCTGTCTTTCCCTAAAAGCAGTGCTTGGTCACACTTTAAATGACTaGGGAGCTAGCACAAAGCTTTGGCAGAATCTGGTGAATGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: CCLSLKAVLGHTLND*GASTKLWQNLVNGA Trigger: AGCCCCATTCACCAGATTCTGCCAAAGCTTTGTGCTAGCTCCCAAGTCATTTAAAGTGTGACCAAGCACTGCTTTTAGGGAAAGACAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| 3UTR-3UTR CCA 90 bp | ACCATTTTCAAGTATATTAGCAAGGCTGCTACAACAGGACCCTCACCGAGTAGAGCTAGCACAAAGCTTTaGCAGAATCTGGTGAATGGG | + |
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Preference number: 2 (lower is better) Translates to: TIFKYISKAATTGPSPSRASTKL*QNLVNG Trigger: CCCATTCACCAGATTCTGCCAAAGCTTTGTGCTAGC...TCTACTCGGTGAGGGTCCTGTTGTAGCAGCCTTGCTAATATACTTGAAAATGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| 3UTR CCA 72 bp | ACAGGACCCTCACCGAGTAGACACAGCAAAGCCCTCTaGAGCACGTCTCAGAATTTAGGGCGTCCATTCCAG | + |
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Preference number: 3 (lower is better) Translates to: TGPSPSRHSKAL*STSQNLGRPFQ Trigger: CTGGAATGGACGCCCTAAATTCTGAGACGTGCTCCAGAGGGCTTTGCTGTGTCTACTCGGTGAGGGTCCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| 3UTR TCA 72 bp | GCCTTCTCTGCCACCTCTAGAGCTAGCTTCAGGTTTTaGTCAAACAGCTCGCATCTAGGTCAGACCCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: AFSATSRASFRF*SNSSHLGQTQK Trigger: CTTCTGGGTCTGACCTAGATGCGAGCTGTTTGATCAAAACCTGAAGCTAGCTCTAGAGGTGGCAGAGAAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| 3UTR-3UTR CAA 90 bp | ACACAGCAAAGCCCTCTGGAGCACGTCTCAGAATTTAGGGCGTCCATTCCAGGTCACACTTTAAATGACTaGGGAGCTAGCACAAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: TQQSPLEHVSEFRASIPGHTLND*GASTKL Trigger: AAGCTTTGTGCTAGCTCCCAAGTCATTTAAAGTGTG...ACCTGGAATGGACGCCCTAAATTCTGAGACGTGCTCCAGAGGGCTTTGCTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| 3UTR GCA 72 bp | AAACCCTGTGTCCTCAAGACAAACAGAGCTGGTCACTaGTGTCTTTCCCTAAAAGCAGTGCTTGGTCACACT | + |
|
Preference number: 3 (lower is better) Translates to: KPCVLKTNRAGH*CLSLKAVLGHT Trigger: AGTGTGACCAAGCACTGCTTTTAGGGAAAGACAGCAGTGACCAGCTCTGTTTGTCTTGAGGACACAGGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | ACAGCATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCATTCATGGCCCACCCGGATaGCGTCGCGCTGGCCGAAAG | + |
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Preference number: 4 (lower is better) Translates to: TAFEPRICHHHQAQWSTIHGPPG*RRAGRK Trigger: CTTTCGGCCAGCGCGACGGCATCCGGGTGGGCCATG...AATGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATGCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | ACACAGCATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCACTCAGCCTCAGCCCGTaGCGAATAGCTGTCCCACTG | + |
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Preference number: 4 (lower is better) Translates to: TQHSSPGSVTITRLSGLPLSLSP*RIAVPL Trigger: CAGTGGGACAGCTATTCGCCACGGGCTGAGGCTGAG...TGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATGCTGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | TCAAGTATATTAGCAAGGCTGCTACAACAGGACCCTCACCGAGTAGACACAGCACGGATGCCGTCGCGCTaGCCGAAAGCGACCAGCACG | + |
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Preference number: 4 (lower is better) Translates to: SSILARLLQQDPHRVDTARMPSR*PKATST Trigger: CGTGCTGGTCGCTTTCGGCCAGCGCGACGGCATCCG...TGCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAGCCTTGCTAATATACTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | CAGAGTAGGACTGTAATATATACAGAGGGGCAGAGAACACAGCATTCGAGCCCACGGATGCCGTCGCGCTaGCCGAAAGCGACCAGCACG | + |
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Preference number: 4 (lower is better) Translates to: QSRTVIYTEGQRTQHSSPRMPSR*PKATST Trigger: CGTGCTGGTCGCTTTCGGCCAGCGCGACGGCATCCG...TGGGCTCGAATGCTGTGTTCTCTGCCCCTCTGTATATATTACAGTCCTACTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | GCTGCTACAACAGGACCCTCACCGAGTAGACACAGCAAAGCCCTCTGGAGCACGAGCTTGCCTAGGGTCTaGCAGGACCACAAACTTGAT | + |
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Preference number: 4 (lower is better) Translates to: AATTGPSPSRHSKALWSTSLPRV*QDHKLD Trigger: ATCAAGTTTGTGGTCCTGGCAGACCCTAGGCAAGCT...CGTGCTCCAGAGGGCTTTGCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | GCTGCTACAACAGGACCCTCACCGAGTAGACACAGCAAAGCCCTCTGGAGCACGATGGCAAAGAGCGAGTaGAACATCGAGGCCAGCATA | + |
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Preference number: 4 (lower is better) Translates to: AATTGPSPSRHSKALWSTMAKSE*NIEASI Trigger: TATGCTGGCCTCGATGTTCCACTCGCTCTTTGCCAT...CGTGCTCCAGAGGGCTTTGCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | GACCCAGGTCCAAAAGTGCCAGCCTTCTCTGCCACCTCTAGAGCTAGCTTCAGGCCAGGACCACAAACTTaGTCCCTGTCAGTGTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: DPGPKVPAFSATSRASFRPGPQT*SLSVFG Trigger: TCCAAACACTGACAGGGATCAAGTTTGTGGTCCTGG...CCTGAAGCTAGCTCTAGAGGTGGCAGAGAAGGCTGGCACTTTTGGACCTGGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | ACCATCACCAGGCTCAGTGGTCTACCATTTTCAAGTATATTAGCAAGGCTGCTACATGGCCCACCCGGATaGCGTCGCGCTGGCCGAAAG | + |
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Preference number: 4 (lower is better) Translates to: TITRLSGLPFSSILARLLHGPPG*RRAGRK Trigger: CTTTCGGCCAGCGCGACGGCATCCGGGTGGGCCATG...TAGCAGCCTTGCTAATATACTTGAAAATGGTAGACCACTGAGCCTGGTGATGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | AGCAAAGCCCTCTGGAGCACGTCTCAGAATTTAGGGCGTCCATTCCAGGTTCATGCCGGCCGAATCGGATaGAAACCGGGTAATTCGCAG | + |
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Preference number: 4 (lower is better) Translates to: SKALWSTSQNLGRPFQVHAGRIG*KPGNSQ Trigger: CTGCGAATTACCCGGTTTCCATCCGATTCGGCCGGC...ATGAACCTGGAATGGACGCCCTAAATTCTGAGACGTGCTCCAGAGGGCTTTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | CAACAGGACCCTCACCGAGTAGACACAGCAAAGCCCTCTGGAGCACGTCTCAGAATGGCAAAGAGCGAGTaGAACATCGAGGCCAGCATA | + |
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Preference number: 4 (lower is better) Translates to: QQDPHRVDTAKPSGARLRMAKSE*NIEASI Trigger: TATGCTGGCCTCGATGTTCCACTCGCTCTTTGCCAT...TCTGAGACGTGCTCCAGAGGGCTTTGCTGTGTCTACTCGGTGAGGGTCCTGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | CATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCATTTTCAGGTCCAGCGGGTAACTaGAAGTCTTCTCAGCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: HSSPGSVTITRLSGLPFSGPAGN*KSSQPQ Trigger: CTGAGGCTGAGAAGACTTTCAGTTACCCGCTGGACC...TGAAAATGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | CATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCATTTTCATCACGTCCATGCCATTaGTGGCCAACACTGCATGGC | + |
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Preference number: 4 (lower is better) Translates to: HSSPGSVTITRLSGLPFSSRPCH*WPTLHG Trigger: GCCATGCAGTGTTGGCCATCAATGGCATGGACGTGA...TGAAAATGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | ACAGCATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCATTCGTCAGCCGTGTACTTaGCATTCACGTCCATGCCAT | + |
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Preference number: 4 (lower is better) Translates to: TAFEPRICHHHQAQWSTIRQPCT*HSRPCH Trigger: ATGGCATGGACGTGAATGGCAAGTACACGGCTGACG...AATGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATGCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | CCGAGTAGACACAGCAAAGCCCTCTGGAGCACGTCTCAGAATTTAGGGCGTCCATCTCAATGCCTGAACTaGCCTGTTCCGGAGATAGCT | + |
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Preference number: 4 (lower is better) Translates to: PSRHSKALWSTSQNLGRPSQCLN*PVPEIA Trigger: AGCTATCTCCGGAACAGGGCAGTTCAGGCATTGAGA...TGGACGCCCTAAATTCTGAGACGTGCTCCAGAGGGCTTTGCTGTGTCTACTCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | GCATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCATTTTCGAATCTATTCCAGCTTaGCTAGGGTCTGCCAGGACC | + |
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Preference number: 4 (lower is better) Translates to: AFEPRICHHHQAQWSTIFESIPA*LGSART Trigger: GGTCCTGGCAGACCCTAGGCAAGCTGGAATAGATTC...GAAAATGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | AGGACTGTAATATATACAGAGGGGCAGAGAACACAGCATTCGAGCCCAGGATCTCTCAGCCTCAGCCCGTaGCGAATAGCTGTCCCACTG | + |
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Preference number: 4 (lower is better) Translates to: RTVIYTEGQRTQHSSPGSLSLSP*RIAVPL Trigger: CAGTGGGACAGCTATTCGCCACGGGCTGAGGCTGAG...AGATCCTGGGCTCGAATGCTGTGTTCTCTGCCCCTCTGTATATATTACAGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | CCGAGTAGACACAGCAAAGCCCTCTGGAGCACGTCTCAGAATTTAGGGCGTCCATGTTCCGGAGATAGCTaGGAACCAATGGCAAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: PSRHSKALWSTSQNLGRPCSGDS*EPMAKS Trigger: GCTCTTTGCCATTGGTTCCCAGCTATCTCCGGAACA...TGGACGCCCTAAATTCTGAGACGTGCTCCAGAGGGCTTTGCTGTGTCTACTCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | TCAAGTATATTAGCAAGGCTGCTACAACAGGACCCTCACCGAGTAGACACAGCAAGCACGCGTTCGTCGTaGAGTTTCAGCAGCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: SSILARLLQQDPHRVDTASTRSS*SFSSRS Trigger: GGACCTGCTGCTGAAACTGCACGACGAACGCGTGCT...TGCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAGCCTTGCTAATATACTTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | AGGACTGTAATATATACAGAGGGGCAGAGAACACAGCATTCGAGCCCAGGATCTGGTCCAGCGGGTAACTaGAAGTCTTCTCAGCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: RTVIYTEGQRTQHSSPGSGPAGN*KSSQPQ Trigger: CTGAGGCTGAGAAGACTTTCAGTTACCCGCTGGACC...AGATCCTGGGCTCGAATGCTGTGTTCTCTGCCCCTCTGTATATATTACAGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | CAGAGTAGGACTGTAATATATACAGAGGGGCAGAGAACACAGCATTCGAGCCCATCACGTCCATGCCATTaGTGGCCAACACTGCATGGC | + |
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Preference number: 4 (lower is better) Translates to: QSRTVIYTEGQRTQHSSPSRPCH*WPTLHG Trigger: GCCATGCAGTGTTGGCCATCAATGGCATGGACGTGA...TGGGCTCGAATGCTGTGTTCTCTGCCCCTCTGTATATATTACAGTCCTACTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | CATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCATTTTCACCAGGACCACAAACTTaGTCCCTGTCAGTGTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: HSSPGSVTITRLSGLPFSPGPQT*SLSVFG Trigger: TCCAAACACTGACAGGGATCAAGTTTGTGGTCCTGG...TGAAAATGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | AGCAAAGCCCTCTGGAGCACGTCTCAGAATTTAGGGCGTCCATTCCAGGTTCATTCTCAATGCCTGAACTaGCCTGTTCCGGAGATAGCT | + |
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Preference number: 4 (lower is better) Translates to: SKALWSTSQNLGRPFQVHSQCLN*PVPEIA Trigger: AGCTATCTCCGGAACAGGGCAGTTCAGGCATTGAGA...ATGAACCTGGAATGGACGCCCTAAATTCTGAGACGTGCTCCAGAGGGCTTTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | AGCAAAGCCCTCTGGAGCACGTCTCAGAATTTAGGGCGTCCATTCCAGGTTCATTGTTCCGGAGATAGCTaGGAACCAATGGCAAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: SKALWSTSQNLGRPFQVHCSGDS*EPMAKS Trigger: GCTCTTTGCCATTGGTTCCCAGCTATCTCCGGAACA...ATGAACCTGGAATGGACGCCCTAAATTCTGAGACGTGCTCCAGAGGGCTTTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | ACACAGCATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCAATCCCTGTCAGTGTTTaGAAGCAGTGCAGTTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: TQHSSPGSVTITRLSGLPIPVSV*KQCSLK Trigger: CTTCAAACTGCACTGCTTCCAAACACTGACAGGGAT...TGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATGCTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | ACCATCACCAGGCTCAGTGGTCTACCATTTTCAAGTATATTAGCAAGGCTGCTAAGCACGCGTTCGTCGTaGAGTTTCAGCAGCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: TITRLSGLPFSSILARLLSTRSS*SFSSRS Trigger: GGACCTGCTGCTGAAACTGCACGACGAACGCGTGCT...TAGCAGCCTTGCTAATATACTTGAAAATGGTAGACCACTGAGCCTGGTGATGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | AGGACTGTAATATATACAGAGGGGCAGAGAACACAGCATTCGAGCCCAGGATCTGAATCTATTCCAGCTTaGCTAGGGTCTGCCAGGACC | + |
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Preference number: 4 (lower is better) Translates to: RTVIYTEGQRTQHSSPGSESIPA*LGSART Trigger: GGTCCTGGCAGACCCTAGGCAAGCTGGAATAGATTC...AGATCCTGGGCTCGAATGCTGTGTTCTCTGCCCCTCTGTATATATTACAGTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | GCGTCCATTCCAGGTTCATCCTATGACCCAGGTCCAAAAGTGCCAGCCTTCTCTATCCCTGTCAGTGTTTaGAAGCAGTGCAGTTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: ASIPGSSYDPGPKVPAFSIPVSV*KQCSLK Trigger: CTTCAAACTGCACTGCTTCCAAACACTGACAGGGAT...AGAGAAGGCTGGCACTTTTGGACCTGGGTCATAGGATGAACCTGGAATGGACGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | TTCAAGTATATTAGCAAGGCTGCTACAACAGGACCCTCACCGAGTAGACACAGCTTTCCAGCATCTCAATaGCTGAACTGCCCTGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: FKYISKAATTGPSPSRHSFPASQ*LNCPVP Trigger: CGGAACAGGGCAGTTCAGGCATTGAGATGCTGGAAA...GCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAGCCTTGCTAATATACTTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CCA 90 bp | GCATTCGAGCCCAGGATCTGTCACCATCACCAGGCTCAGTGGTCTACCATTTTCTTCCAAGGAGTAGAATaGATTCTTGAGGGCAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: AFEPRICHHHQAQWSTIFFQGVE*ILEGKV Trigger: GACTTTGCCCTCAAGAATCCATTCTACTCCTTGGAA...GAAAATGGTAGACCACTGAGCCTGGTGATGGTGACAGATCCTGGGCTCGAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | TTCCAGGTTCATCCTATGACCCAGGTCCAAAAGTGCCAGCCTTCTCTGCCACCTAGTAGAATGGATTCTTaGGGGCAAAGTCTGAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: FQVHPMTQVQKCQPSLPPSRMDS*GQSLSK Trigger: TTTACTCAGACTTTGCCCTCAAGAATCCATTCTACT...AGGTGGCAGAGAAGGCTGGCACTTTTGGACCTGGGTCATAGGATGAACCTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | TCAAGTATATTAGCAAGGCTGCTACAACAGGACCCTCACCGAGTAGACACAGCAGCTAGCTTCAGGTTTTaGTCAAACAGCTCGCATCTG | + |
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Preference number: 4 (lower is better) Translates to: SSILARLLQQDPHRVDTAASFRF*SNSSHL Trigger: CAGATGCGAGCTGTTTGATCAAAACCTGAAGCTAGC...TGCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAGCCTTGCTAATATACTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034623.8 |
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| CDS-3UTR GCA 90 bp | TCTACCATTTTCAAGTATATTAGCAAGGCTGCTACAACAGGACCCTCACCGAGTTTTCCAGCATCTCAATaGCTGAACTGCCCTGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: STIFKYISKAATTGPSPSFPASQ*LNCPVP Trigger: CGGAACAGGGCAGTTCAGGCATTGAGATGCTGGAAA...ACTCGGTGAGGGTCCTGTTGTAGCAGCCTTGCTAATATACTTGAAAATGGTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| 3UTR CAA 72 bp | TCCCTAAAAGCAGTGCTTGGTCACACTTTAAATGACTaGGGAGCTAGCACAAAGCTTTGGCAGAATCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: SLKAVLGHTLND*GASTKLWQNLV Trigger: CACCAGATTCTGCCAAAGCTTTGTGCTAGCTCCCAAGTCATTTAAAGTGTGACCAAGCACTGCTTTTAGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | TATTTCAGCATTGCTAAGCCAGTTTCCTCCATAAATAAATCTATACAGAGTAGGCAGCATCTCAATGCCTaGACTGCCCTGTTCCGGAGA | + |
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Preference number: 4 (lower is better) Translates to: YFSIAKPVSSINKSIQSRQHLNA*TALFRR Trigger: TCTCCGGAACAGGGCAGTTCAGGCATTGAGATGCTG...CCTACTCTGTATAGATTTATTTATGGAGGAAACTGGCTTAGCAATGCTGAAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | TCCATAAATAAATCTATACAGAGTAGGACTGTAATATATACAGAGGGGCAGAGAACCCAGGTCCAAAAGTaGCAGCCTTCTCTGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: SINKSIQSRTVIYTEGQRTQVQK*QPSLPP Trigger: AGGTGGCAGAGAAGGCTGGCACTTTTGGACCTGGGT...TCTCTGCCCCTCTGTATATATTACAGTCCTACTCTGTATAGATTTATTTATGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034623.8 |
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| CDS-3UTR CCA 90 bp | ACCATCACCAGGCTCAGTGGTCTACCATTTTCAAGTATATTAGCAAGGCTGCTATTCCAAGGAGTAGAATaGATTCTTGAGGGCAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: TITRLSGLPFSSILARLLFQGVE*ILEGKV Trigger: GACTTTGCCCTCAAGAATCCATTCTACTCCTTGGAA...TAGCAGCCTTGCTAATATACTTGAAAATGGTAGACCACTGAGCCTGGTGATGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR TCA 90 bp | CATCACCAGGCTCAGTGGTCTACCATTTTCAAGTATATTAGCAAGGCTGCTACAAGTAGAATGGATTCTTaGGGGCAAAGTCTGAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: HHQAQWSTIFKYISKAATSRMDS*GQSLSK Trigger: TTTACTCAGACTTTGCCCTCAAGAATCCATTCTACT...TGTAGCAGCCTTGCTAATATACTTGAAAATGGTAGACCACTGAGCCTGGTGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR GCA 90 bp | TCCTCCATAAATAAATCTATACAGAGTAGGACTGTAATATATACAGAGGGGCAGAGCTTGCCTAGGGTCTaGCAGGACCACAAACTTGAT | + |
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Preference number: 4 (lower is better) Translates to: SSINKSIQSRTVIYTEGQSLPRV*QDHKLD Trigger: ATCAAGTTTGTGGTCCTGGCAGACCCTAGGCAAGCT...CTGCCCCTCTGTATATATTACAGTCCTACTCTGTATAGATTTATTTATGGAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS TCA 90 bp | GCACGCGTTCGTCGTGCAGTTTCAGCAGCAGGTCCAGCGGGTAACTaGAAGTCTTCTCAGCCTCAGCCCGTGGCGAATAGCTGTCCCACT | + |
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Preference number: 5 (lower is better) Translates to: ARVRRAVSAAGPAGN*KSSQPQPVANSCPT Trigger: AGTGGGACAGCTATTCGCCACGGGCTGAGGCTGAGAAGACTTTCAGTTACCCGCTGGACCTGCTGCTGAAACTGCACGACGAACGCGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CCA 90 bp | CAGCAGGTCCAGCGGGTAACTGAAAGTCTTCTCAGCCTCAGCCCGTaGCGAATAGCTGTCCCACTGGTAAATCAGGCCGCCGGCTTTGTT | + |
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Preference number: 5 (lower is better) Translates to: QQVQRVTESLLSLSP*RIAVPLVNQAAGFV Trigger: AACAAAGCCGGCGGCCTGATTTACCAGTGGGACAGCTATTCGCCACGGGCTGAGGCTGAGAAGACTTTCAGTTACCCGCTGGACCTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CAA 90 bp | AGCAAGGCTGCTACAACAGGACCCTCACCGAGTAGACACAGCAAAGCCCTCTGGCCGTCAGCCGTGTACTaGCCATTCACGTCCATGCCA | + |
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Preference number: 5 (lower is better) Translates to: SKAATTGPSPSRHSKALWPSAVY*PFTSMP Trigger: TGGCATGGACGTGAATGGCAAGTACACGGCTGACGG...CCAGAGGGCTTTGCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAGCCTTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CAA 90 bp | GCTGCTACAACAGGACCCTCACCGAGTAGACACAGCAAAGCCCTCTGGAGCACGTTCACGTCCATGCCATaGATGGCCAACACTGCATGG | + |
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Preference number: 5 (lower is better) Translates to: AATTGPSPSRHSKALWSTFTSMP*MANTAW Trigger: CCATGCAGTGTTGGCCATCAATGGCATGGACGTGAA...CGTGCTCCAGAGGGCTTTGCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CAA 90 bp | GTGAAGCCTACGGAAACCCTGTGTCCTCAAGACAAACAGAGCTGGTCACTGCTGCCGTCAGCCGTGTACTaGCCATTCACGTCCATGCCA | + |
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Preference number: 5 (lower is better) Translates to: VKPTETLCPQDKQSWSLLPSAVY*PFTSMP Trigger: TGGCATGGACGTGAATGGCAAGTACACGGCTGACGG...CAGCAGTGACCAGCTCTGTTTGTCTTGAGGACACAGGGTTTCCGTAGGCTTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| CDS-3UTR CAA 90 bp | CTGCTACAACAGGACCCTCACCGAGTAGACACAGCAAAGCCCTCTGGAGCACGTAGAATCTATTCCAGCTaGCCTAGGGTCTGCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: LLQQDPHRVDTAKPSGARRIYSS*PRVCQD Trigger: GTCCTGGCAGACCCTAGGCAAGCTGGAATAGATTCT...ACGTGCTCCAGAGGGCTTTGCTGTGTCTACTCGGTGAGGGTCCTGTTGTAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CAA 90 bp | GACCCAGGTCCAAAAGTGCCAGCCTTCTCTGCCACCTCTAGAGCTAGCTTCAGGAGAATCTATTCCAGCTaGCCTAGGGTCTGCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: DPGPKVPAFSATSRASFRRIYSS*PRVCQD Trigger: GTCCTGGCAGACCCTAGGCAAGCTGGAATAGATTCT...CCTGAAGCTAGCTCTAGAGGTGGCAGAGAAGGCTGGCACTTTTGGACCTGGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217163.2 |
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| CDS CCA 90 bp | GTTTCCAGCATCTCAATGCCTGAACTGCCCTGTTCCGGAGATAGCTaGGAACCAATGGCAAAGAGCGAGTGGAACATCGAGGCCAGCATA | + |
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Preference number: 5 (lower is better) Translates to: VSSISMPELPCSGDS*EPMAKSEWNIEASI Trigger: TATGCTGGCCTCGATGTTCCACTCGCTCTTTGCCATTGGTTCCCAGCTATCTCCGGAACAGGGCAGTTCAGGCATTGAGATGCTGGAAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CAA 90 bp | ACCATCACCAGGCTCAGTGGTCTACCATTTTCAAGTATATTAGCAAGGCTGCTATTCACGTCCATGCCATaGATGGCCAACACTGCATGG | + |
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Preference number: 5 (lower is better) Translates to: TITRLSGLPFSSILARLLFTSMP*MANTAW Trigger: CCATGCAGTGTTGGCCATCAATGGCATGGACGTGAA...TAGCAGCCTTGCTAATATACTTGAAAATGGTAGACCACTGAGCCTGGTGATGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS GCA 90 bp | ATAAATTTTTCGGAGAAGAGAATCTATTCCAGCTTGCCTAGGGTCTaGCAGGACCACAAACTTGATCCCTGTCAGTGTTTGGAAGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: INFSEKRIYSSLPRV*QDHKLDPCQCLEAV Trigger: CACTGCTTCCAAACACTGACAGGGATCAAGTTTGTGGTCCTGGCAGACCCTAGGCAAGCTGGAATAGATTCTCTTCTCCGAAAAATTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS-3UTR CAA 90 bp | TCCATAAATAAATCTATACAGAGTAGGACTGTAATATATACAGAGGGGCAGAGAGCCAGGACCACAAACTaGATCCCTGTCAGTGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: SINKSIQSRTVIYTEGQRARTTN*IPVSVW Trigger: CCAAACACTGACAGGGATCAAGTTTGTGGTCCTGGC...TCTCTGCCCCTCTGTATATATTACAGTCCTACTCTGTATAGATTTATTTATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CCA 72 bp | GCCAACACTGCATGGCCCACCCGGATGCCGTCGCGCTaGCCGAAAGCGACCAGCACGCGTTCGTCGTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: ANTAWPTRMPSR*PKATSTRSSCS Trigger: ACTGCACGACGAACGCGTGCTGGTCGCTTTCGGCCAGCGCGACGGCATCCGGGTGGGCCATGCAGTGTTGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CAA 90 bp | ACTTCTTTCCCGTCAGCCGTGTACTTGCCATTCACGTCCATGCCATaGATGGCCAACACTGCATGGCCCACCCGGATGCCGTCGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: TSFPSAVYLPFTSMP*MANTAWPTRMPSRW Trigger: CCAGCGCGACGGCATCCGGGTGGGCCATGCAGTGTTGGCCATCAATGGCATGGACGTGAATGGCAAGTACACGGCTGACGGGAAAGAAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS TCA 72 bp | CGTCGTGCAGTTTCAGCAGCAGGTCCAGCGGGTAACTaGAAGTCTTCTCAGCCTCAGCCCGTGGCGAATAGC | + |
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Preference number: 6 (lower is better) Translates to: RRAVSAAGPAGN*KSSQPQPVANS Trigger: GCTATTCGCCACGGGCTGAGGCTGAGAAGACTTTCAGTTACCCGCTGGACCTGCTGCTGAAACTGCACGACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CCA 72 bp | CAGCGGGTAACTGAAAGTCTTCTCAGCCTCAGCCCGTaGCGAATAGCTGTCCCACTGGTAAATCAGGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: QRVTESLLSLSP*RIAVPLVNQAA Trigger: GGCGGCCTGATTTACCAGTGGGACAGCTATTCGCCACGGGCTGAGGCTGAGAAGACTTTCAGTTACCCGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CAA 90 bp | GGGTTACCCAGATACTCCAGCACTTCTTTCCCGTCAGCCGTGTACTaGCCATTCACGTCCATGCCATTGATGGCCAACACTGCATGGCCC | + |
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Preference number: 6 (lower is better) Translates to: GLPRYSSTSFPSAVY*PFTSMPLMANTAWP Trigger: GGGCCATGCAGTGTTGGCCATCAATGGCATGGACGTGAATGGCAAGTACACGGCTGACGGGAAAGAAGTGCTGGAGTATCTGGGTAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CCA 72 bp | ATCTCAATGCCTGAACTGCCCTGTTCCGGAGATAGCTaGGAACCAATGGCAAAGAGCGAGTGGAACATCGAG | + |
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Preference number: 6 (lower is better) Translates to: ISMPELPCSGDS*EPMAKSEWNIE Trigger: CTCGATGTTCCACTCGCTCTTTGCCATTGGTTCCCAGCTATCTCCGGAACAGGGCAGTTCAGGCATTGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CAA 72 bp | AGATACTCCAGCACTTCTTTCCCGTCAGCCGTGTACTaGCCATTCACGTCCATGCCATTGATGGCCAACACT | + |
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Preference number: 6 (lower is better) Translates to: RYSSTSFPSAVY*PFTSMPLMANT Trigger: AGTGTTGGCCATCAATGGCATGGACGTGAATGGCAAGTACACGGCTGACGGGAAAGAAGTGCTGGAGTATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS GCA 72 bp | TCGGAGAAGAGAATCTATTCCAGCTTGCCTAGGGTCTaGCAGGACCACAAACTTGATCCCTGTCAGTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: SEKRIYSSLPRV*QDHKLDPCQCL Trigger: CAAACACTGACAGGGATCAAGTTTGTGGTCCTGGCAGACCCTAGGCAAGCTGGAATAGATTCTCTTCTCCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CAA 90 bp | AGGACCACAAACTTGATCCCTGTCAGTGTTTGGAAGCAGTGCAGTTaGAAGGTGTCTGTTTCCAGCATCTCAATGCCTGAACTGCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: RTTNLIPVSVWKQCS*KVSVSSISMPELPC Trigger: ACAGGGCAGTTCAGGCATTGAGATGCTGGAAACAGACACCTTCAAACTGCACTGCTTCCAAACACTGACAGGGATCAAGTTTGTGGTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS TCA 72 bp | GCCTTCTCTGCCACCTCTAGAGCTAGCTTCAGGTTTTaGTCAAACAGCTCGCATCTGATAGGCATTTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: AFSATSRASFRF*SNSSHLIGISK Trigger: CTTGGAAATGCCTATCAGATGCGAGCTGTTTGATCAAAACCTGAAGCTAGCTCTAGAGGTGGCAGAGAAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034623.8 |
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| CDS GCA 72 bp | ACCACAAACTTGATCCCTGTCAGTGTTTGGAAGCAGTaGAGTTTGAAGGTGTCTGTTTCCAGCATCTCAATG | + |
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Preference number: 6 (lower is better) Translates to: TTNLIPVSVWKQ*SLKVSVSSISM Trigger: CATTGAGATGCTGGAAACAGACACCTTCAAACTGCACTGCTTCCAAACACTGACAGGGATCAAGTTTGTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CAA 72 bp | AACTTGATCCCTGTCAGTGTTTGGAAGCAGTGCAGTTaGAAGGTGTCTGTTTCCAGCATCTCAATGCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: NLIPVSVWKQCS*KVSVSSISMPE Trigger: TTCAGGCATTGAGATGCTGGAAACAGACACCTTCAAACTGCACTGCTTCCAAACACTGACAGGGATCAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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| CDS CAA 72 bp | TTCATAAATTTTTCGGAGAAGAGAATCTATTCCAGCTaGCCTAGGGTCTGCCAGGACCACAAACTTGATCCC | + |
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Preference number: 6 (lower is better) Translates to: FINFSEKRIYSS*PRVCQDHKLDP Trigger: GGGATCAAGTTTGTGGTCCTGGCAGACCCTAGGCAAGCTGGAATAGATTCTCTTCTCCGAAAAATTTATGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034623.8 ENSMUST00000217163.2 |
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