Pregenerated sensors for TRAPPC3L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071340Ensembl transcript IDs: ENSMUST00000095758.3, ENSMUST00000220095.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AATGCTCATCTGTTGATGGCCACTTGGACTGACTTCATTCACATTTaGGCTATTACAAACAACGCTCTGGACAGCCAACCACCAGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: NAHLLMATWTDFIHI*AITNNALDSQPPVA Trigger: AGCCACTGGTGGTTGGCTGTCCAGAGCGTTGTTTGTAATAGCCAAAATGTGAATGAAGTCAGTCCAAGTGGCCATCAACAGATGAGCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| 3UTR-3UTR CCA 90 bp | AGGTCCTCAGGGTTCATCCATGTACTAGCATGTGCCAGAATCCCTTTTCTTTCACTGTTGATGGCCACTTaGACTGACTTCATTCACATT | + |
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Preference number: 2 (lower is better) Translates to: RSSGFIHVLACARIPFLSLLMAT*TDFIHI Trigger: AATGTGAATGAAGTCAGTCCAAGTGGCCATCAACAG...TGAAAGAAAAGGGATTCTGGCACATGCTAGTACATGGATGAACCCTGAGGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCCAGAATCCCTTTTCTTTCATGTTGAGCAAAAGGTCCTTGTAGATAAGTCCTTAATGCTCATCTGTTaGTGGCCACTTGGACTGACT | + |
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Preference number: 2 (lower is better) Translates to: VPESLFFHVEQKVLVDKSLMLIC*WPLGLT Trigger: AGTCAGTCCAAGTGGCCATCAACAGATGAGCATTAA...GGACTTATCTACAAGGACCTTTTGCTCAACATGAAAGAAAAGGGATTCTGGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| 3UTR-3UTR CCA 90 bp | TCTTTAAGAATGCATTTCAATAGGCATAAGTTCATTCACAGTGCTGTGGACATTTTACAAACAACGCTCTaGACAGCCAACCACCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: SLRMHFNRHKFIHSAVDILQTTL*TANHQW Trigger: CCACTGGTGGTTGGCTGTCCAGAGCGTTGTTTGTAA...AATGTCCACAGCACTGTGAATGAACTTATGCCTATTGAAATGCATTCTTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| 3UTR-3UTR TCA 90 bp | TCTTTAAGAATGCATTTCAATAGGCATAAGTTCATTCACAGTGCTGTGGACATTGATGGCCACTTGGACTaGCTTCATTCACATTTTGGC | + |
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Preference number: 2 (lower is better) Translates to: SLRMHFNRHKFIHSAVDIDGHLD*LHSHFG Trigger: GCCAAAATGTGAATGAAGTCAGTCCAAGTGGCCATC...AATGTCCACAGCACTGTGAATGAACTTATGCCTATTGAAATGCATTCTTAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| 3UTR TCA 72 bp | CAGGCAACACAAAACTTGTGTGGCTGCATGTTTAGCTaGTACTCACTGGACAGCCAACCACCAGTGGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: QATQNLCGCMFS*YSLDSQPPVAL Trigger: GAGAGCCACTGGTGGTTGGCTGTCCAGTGAGTATCAGCTAAACATGCAGCCACACAAGTTTTGTGTTGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220095.2 |
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| 3UTR GCA 72 bp | TCTAAGGTCCTCAGGGTTCATCCATGTACTAGCATGTaGCAGAATCCCTTTTCTTTCATGTTGAGCAAAAGG | + |
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Preference number: 3 (lower is better) Translates to: SKVLRVHPCTSM*QNPFSFMLSKR Trigger: CCTTTTGCTCAACATGAAAGAAAAGGGATTCTGGCACATGCTAGTACATGGATGAACCCTGAGGACCTTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| 3UTR-3UTR CAA 90 bp | AGGTCCTCAGGGTTCATCCATGTACTAGCATGTGCCAGAATCCCTTTTCTTTCAGACTTCATTCACATTTaGGCTATTACAAACAACGCT | + |
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Preference number: 3 (lower is better) Translates to: RSSGFIHVLACARIPFLSDFIHI*AITNNA Trigger: AGCGTTGTTTGTAATAGCCAAAATGTGAATGAAGTC...TGAAAGAAAAGGGATTCTGGCACATGCTAGTACATGGATGAACCCTGAGGACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| 3UTR TCA 72 bp | AAGAAGTTACTTGTATCAGAAATTGCTAAAAACGTATaGTACACAGCAAGATTTATAAGCCTGTCAAAGCCC | + |
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Preference number: 3 (lower is better) Translates to: KKLLVSEIAKNV*YTARFISLSKP Trigger: GGGCTTTGACAGGCTTATAAATCTTGCTGTGTATCATACGTTTTTAGCAATTTCTGATACAAGTAACTTCTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220095.2 |
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| CDS-3UTR TCA 90 bp | GCCACTTGGACTGACTTCATTCACATTTTGGCTATTACAAACAACGCTCTGGACACATTAGCAGCCAAATaGACCATCTCCAGGGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: ATWTDFIHILAITNNALDTLAAK*TISRAP Trigger: AGGGGCCCTGGAGATGGTTCATTTGGCTGCTAATGT...GTCCAGAGCGTTGTTTGTAATAGCCAAAATGTGAATGAAGTCAGTCCAAGTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR GCA 90 bp | GCTCATCTGTTGATGGCCACTTGGACTGACTTCATTCACATTTTGGCTATTACAATTGCAGTAGCACAGTaGAGATCGCCCAGCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: AHLLMATWTDFIHILAITIAVAQ*RSPSRQ Trigger: CTGCCTGCTGGGCGATCTGCACTGTGCTACTGCAAT...TGTAATAGCCAAAATGTGAATGAAGTCAGTCCAAGTGGCCATCAACAGATGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR TCA 90 bp | GTGCCAGAATCCCTTTTCTTTCATGTTGAGCAAAAGGTCCTTGTAGATAAGTCCCCAGAGCTCCATAGGTaGGCACAAAAAGGTCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: VPESLFFHVEQKVLVDKSPELHR*AQKGLC Trigger: ACAAAGACCTTTTTGTGCTCACCTATGGAGCTCTGG...GGACTTATCTACAAGGACCTTTTGCTCAACATGAAAGAAAAGGGATTCTGGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR GCA 90 bp | AGGTCCTCAGGGTTCATCCATGTACTAGCATGTGCCAGAATCCCTTTTCTTTCACTTTTTCATAATCCTTaGATAGCTGGGCAACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RSSGFIHVLACARIPFLSLFHNP*IAGQPE Trigger: CTCTGGTTGCCCAGCTATGCAAGGATTATGAAAAAG...TGAAAGAAAAGGGATTCTGGCACATGCTAGTACATGGATGAACCCTGAGGACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR GCA 90 bp | GCTCATCTGTTGATGGCCACTTGGACTGACTTCATTCACATTTTGGCTATTACATCCCACAGAGCAAATTaGAGTAGCACAGTGCAGATC | + |
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Preference number: 4 (lower is better) Translates to: AHLLMATWTDFIHILAITSHRAN*SSTVQI Trigger: GATCTGCACTGTGCTACTGCAATTTGCTCTGTGGGA...TGTAATAGCCAAAATGTGAATGAAGTCAGTCCAAGTGGCCATCAACAGATGAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR CCA 90 bp | AGGTCCTCAGGGTTCATCCATGTACTAGCATGTGCCAGAATCCCTTTTCTTTCATATTTTGTGATATTCTaGCCTTTTGTGCGCAGGACG | + |
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Preference number: 4 (lower is better) Translates to: RSSGFIHVLACARIPFLSYFVIF*PFVRRT Trigger: CGTCCTGCGCACAAAAGGCCAGAATATCACAAAATA...TGAAAGAAAAGGGATTCTGGCACATGCTAGTACATGGATGAACCCTGAGGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR CCA 90 bp | AATGCTCATCTGTTGATGGCCACTTGGACTGACTTCATTCACATTTTGGCTATTTTTCTGCTTGAATTGTaGCAGGTCACACTTGGTGTA | + |
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Preference number: 4 (lower is better) Translates to: NAHLLMATWTDFIHILAIFLLEL*QVTLGV Trigger: TACACCAAGTGTGACCTGCCACAATTCAAGCAGAAA...AATAGCCAAAATGTGAATGAAGTCAGTCCAAGTGGCCATCAACAGATGAGCATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR GCA 90 bp | AATGCTCATCTGTTGATGGCCACTTGGACTGACTTCATTCACATTTTGGCTATTCCTTTTAGTCTGTCTTaGAAGAATGTAACATTAGCA | + |
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Preference number: 4 (lower is better) Translates to: NAHLLMATWTDFIHILAIPFSLS*KNVTLA Trigger: TGCTAATGTTACATTCTTGCAAGACAGACTAAAAGG...AATAGCCAAAATGTGAATGAAGTCAGTCCAAGTGGCCATCAACAGATGAGCATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR TCA 90 bp | TCTTTAAGAATGCATTTCAATAGGCATAAGTTCATTCACAGTGCTGTGGACATTAAATTCATTTCTGCTTaGATTGTGGCAGGTCACACT | + |
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Preference number: 4 (lower is better) Translates to: SLRMHFNRHKFIHSAVDIKFISA*IVAGHT Trigger: AGTGTGACCTGCCACAATTCAAGCAGAAATGAATTT...AATGTCCACAGCACTGTGAATGAACTTATGCCTATTGAAATGCATTCTTAAAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS GCA 90 bp | CAGGGCCCCTCTGATGATCCCACAGAGCAAATTGCAGTAGCACAGTaGAGATCGCCCAGCAGGCAGCTCTTCGACGAACTCTGCCAGAGG | + |
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Preference number: 5 (lower is better) Translates to: QGPSDDPTEQIAVAQ*RSPSRQLFDELCQR Trigger: CCTCTGGCAGAGTTCGTCGAAGAGCTGCCTGCTGGGCGATCTGCACTGTGCTACTGCAATTTGCTCTGTGGGATCATCAGAGGGGCCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095758.3 ENSMUST00000220095.2 |
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| CDS-3UTR CAA 90 bp | ACTTTTAATGCTCATCTGTTGATGGCCACTTGGACTGACTTCATTCACATTTTGTCATTTCTGCTTGAATaGTGGCAGGTCACACTTGGT | + |
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Preference number: 5 (lower is better) Translates to: TFNAHLLMATWTDFIHILSFLLE*WQVTLG Trigger: ACCAAGTGTGACCTGCCACAATTCAAGCAGAAATGA...CAAAATGTGAATGAAGTCAGTCCAAGTGGCCATCAACAGATGAGCATTAAAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS-3UTR CAA 90 bp | ACTTTTAATGCTCATCTGTTGATGGCCACTTGGACTGACTTCATTCACATTTTGTCTGCCAGAGGATTCTaGTGTAGAATCAGGGAAAAT | + |
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Preference number: 5 (lower is better) Translates to: TFNAHLLMATWTDFIHILSARGF*CRIREN Trigger: ATTTTCCCTGATTCTACACAAGAATCCTCTGGCAGA...CAAAATGTGAATGAAGTCAGTCCAAGTGGCCATCAACAGATGAGCATTAAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS GCA 72 bp | TCTGATGATCCCACAGAGCAAATTGCAGTAGCACAGTaGAGATCGCCCAGCAGGCAGCTCTTCGACGAACTC | + |
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Preference number: 6 (lower is better) Translates to: SDDPTEQIAVAQ*RSPSRQLFDEL Trigger: GAGTTCGTCGAAGAGCTGCCTGCTGGGCGATCTGCACTGTGCTACTGCAATTTGCTCTGTGGGATCATCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095758.3 ENSMUST00000220095.2 |
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| CDS CAA 90 bp | GATCGCCCAGCAGGCAGCTCTTCGACGAACTCTGCCAGAGGATTCTaGTGTAGAATCAGGGAAAATTCATTTCTGCTTGAATTGTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: DRPAGSSSTNSARGF*CRIRENSFLLELWQ Trigger: CTGCCACAATTCAAGCAGAAATGAATTTTCCCTGATTCTACACAAGAATCCTCTGGCAGAGTTCGTCGAAGAGCTGCCTGCTGGGCGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095758.3 ENSMUST00000220095.2 |
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| CDS CAA 72 bp | GCAGGCAGCTCTTCGACGAACTCTGCCAGAGGATTCTaGTGTAGAATCAGGGAAAATTCATTTCTGCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: AGSSSTNSARGF*CRIRENSFLLE Trigger: TTCAAGCAGAAATGAATTTTCCCTGATTCTACACAAGAATCCTCTGGCAGAGTTCGTCGAAGAGCTGCCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095758.3 ENSMUST00000220095.2 |
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| CDS TCA 72 bp | AATCCTTGCATAGCTGGGCAACCAGAGCTCCATAGGTaGGCACAAAAAGGTCTTTGTTTATTTTGTGATATT | + |
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Preference number: 6 (lower is better) Translates to: NPCIAGQPELHR*AQKGLCLFCDI Trigger: AATATCACAAAATAAACAAAGACCTTTTTGTGCTCACCTATGGAGCTCTGGTTGCCCAGCTATGCAAGGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095758.3 |
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| CDS CAA 72 bp | TTGTGTAGAATCAGGGAAAATTCATTTCTGCTTGAATaGTGGCAGGTCACACTTGGTGTAATTCCCAAGTAC | + |
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Preference number: 6 (lower is better) Translates to: LCRIRENSFLLE*WQVTLGVIPKY Trigger: GTACTTGGGAATTACACCAAGTGTGACCTGCCACAATTCAAGCAGAAATGAATTTTCCCTGATTCTACACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095758.3 ENSMUST00000220095.2 |
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| CDS CAA 90 bp | AGAGGATTCTTGTGTAGAATCAGGGAAAATTCATTTCTGCTTGAATaGTGGCAGGTCACACTTGGTGTAATTCCCAAGTACATCTTAAAA | + |
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Preference number: 6 (lower is better) Translates to: RGFLCRIRENSFLLE*WQVTLGVIPKYILK Trigger: TTTTAAGATGTACTTGGGAATTACACCAAGTGTGACCTGCCACAATTCAAGCAGAAATGAATTTTCCCTGATTCTACACAAGAATCCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095758.3 ENSMUST00000220095.2 |
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