Pregenerated sensors for TRAPPC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028847Ensembl transcript IDs: ENSMUST00000030660.9
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACTGGCTTCCGTaGCCTGGCAGACTACAGTGTCACTACAGCCAACAATTCTTACCC | + |
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Preference number: 1 (lower is better) Translates to: GRLPRSRCFRQDWLP*PGRLQCHYSQQFLP Trigger: GGGTAAGAATTGTTGGCTGTAGTGACACTGTAGTCTGCCAGGCCACGGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR CCA 90 bp | ATGAGACCTGGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACTaGCTTCCGTGGCCTGGCAGACTACAGTGTCACTACAGCCAACAA | + |
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Preference number: 1 (lower is better) Translates to: MRPGRLPRSRCFRQD*LPWPGRLQCHYSQQ Trigger: TTGTTGGCTGTAGTGACACTGTAGTCTGCCAGGCCACGGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCCAGGTCTCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR CCA 90 bp | AAAAAGAGGAGATGTTGCCTCCAAACAGCAGGGAGGAATGAGACCTaGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACTGGCTTCC | + |
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Preference number: 1 (lower is better) Translates to: KKRRCCLQTAGRNET*AASQKPVFPAGLAS Trigger: GGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCCAGGTCTCATTCCTCCCTGCTGTTTGGAGGCAACATCTCCTCTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR CCA 90 bp | TTAGTCCAACCAAGGGCAAGTACATCCTGCCCTTCTGAAGGGAAATaGAGCAAAGAACCCCCTTCTGAGGTGCATATTTGTGGGGCAAAC | + |
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Preference number: 1 (lower is better) Translates to: LVQPRASTSCPSEGK*SKEPPSEVHICGAN Trigger: GTTTGCCCCACAAATATGCACCTCAGAAGGGGGTTCTTTGCTCCATTTCCCTTCAGAAGGGCAGGATGTACTTGCCCTTGGTTGGACTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR TCA 90 bp | AAAGTGGGCTTTGCTTTGGAAAATTCACAGGAATGTAAAATGGTTTaGGCTCTCTTAGTCCAACCAAGGGCAAGTACATCCTGCCCTTCT | + |
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Preference number: 1 (lower is better) Translates to: KVGFALENSQECKMV*ALLVQPRASTSCPS Trigger: AGAAGGGCAGGATGTACTTGCCCTTGGTTGGACTAAGAGAGCTCAAACCATTTTACATTCCTGTGAATTTTCCAAAGCAAAGCCCACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAGACCTGGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACTGGCTTCCGGAATGTAAAATGGTTTaGGCTCTCTTAGTCCAACCA | + |
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Preference number: 2 (lower is better) Translates to: MRPGRLPRSRCFRQDWLPECKMV*ALLVQP Trigger: TGGTTGGACTAAGAGAGCTCAAACCATTTTACATTC...CGGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCCAGGTCTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR-3UTR GCA 90 bp | TGTTGCCTCCAAACAGCAGGGAGGAATGAGACCTGGGCGGCTTCCCAGAAGCCGAACAGACTATCAGTCTaGTCTCTATTAGCATGGAGG | + |
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Preference number: 2 (lower is better) Translates to: CCLQTAGRNETWAASQKPNRLSV*SLLAWR Trigger: CCTCCATGCTAATAGAGAGCAGACTGATAGTCTGTT...CGGCTTCTGGGAAGCCGCCCAGGTCTCATTCCTCCCTGCTGTTTGGAGGCAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR-3UTR GCA 90 bp | CTTCCGTGGCCTGGCAGACTACAGTGTCACTACAGCCAACAATTCTTACCCACCAACCCCCTTCTGAGGTaGATATTTGTGGGGCAAACA | + |
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Preference number: 2 (lower is better) Translates to: LPWPGRLQCHYSQQFLPTNPLLR*IFVGQT Trigger: TGTTTGCCCCACAAATATGCACCTCAGAAGGGGGTT...GGTGGGTAAGAATTGTTGGCTGTAGTGACACTGTAGTCTGCCAGGCCACGGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR-3UTR CCA 90 bp | CTTCCGTGGCCTGGCAGACTACAGTGTCACTACAGCCAACAATTCTTACCCACCCCTTCTGAAGGGAAATaGAGCAAAGAACCCCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: LPWPGRLQCHYSQQFLPTPSEGK*SKEPPS Trigger: AGAAGGGGGTTCTTTGCTCCATTTCCCTTCAGAAGG...GGTGGGTAAGAATTGTTGGCTGTAGTGACACTGTAGTCTGCCAGGCCACGGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR-3UTR GCA 90 bp | TCCGTAAAAAGAGGAGATGTTGCCTCCAAACAGCAGGGAGGAATGAGACCTGGGGGTCAAAGTGGGCTTTaGTTTGGAAAATTCACAGGA | + |
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Preference number: 2 (lower is better) Translates to: SVKRGDVASKQQGGMRPGGQSGL*FGKFTG Trigger: TCCTGTGAATTTTCCAAAGCAAAGCCCACTTTGACC...CCCAGGTCTCATTCCTCCCTGCTGTTTGGAGGCAACATCTCCTCTTTTTACGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR-3UTR CCA 90 bp | ACTACAGTGTCACTACAGCCAACAATTCTTACCCACCCCTTCCCAGCGTTCTCCAAGTGGGCTTTGCTTTaGAAAATTCACAGGAATGTA | + |
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Preference number: 2 (lower is better) Translates to: TTVSLQPTILTHPFPAFSKWALL*KIHRNV Trigger: TACATTCCTGTGAATTTTCCAAAGCAAAGCCCACTT...GGAGAACGCTGGGAAGGGGTGGGTAAGAATTGTTGGCTGTAGTGACACTGTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR CCA 72 bp | GGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACTaGCTTCCGTGGCCTGGCAGACTACAGTGTCACTAC | + |
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Preference number: 3 (lower is better) Translates to: GRLPRSRCFRQD*LPWPGRLQCHY Trigger: GTAGTGACACTGTAGTCTGCCAGGCCACGGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR CCA 72 bp | CCCAGAAGCCGGTGTTTCCGGCAGGACTGGCTTCCGTaGCCTGGCAGACTACAGTGTCACTACAGCCAACAA | + |
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Preference number: 3 (lower is better) Translates to: PRSRCFRQDWLP*PGRLQCHYSQQ Trigger: TTGTTGGCTGTAGTGACACTGTAGTCTGCCAGGCCACGGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR CCA 72 bp | AGATGTTGCCTCCAAACAGCAGGGAGGAATGAGACCTaGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: RCCLQTAGRNET*AASQKPVFPAG Trigger: TCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCCAGGTCTCATTCCTCCCTGCTGTTTGGAGGCAACATCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR CCA 72 bp | AAGCCGGTGTTTCCGGCAGGACTGGCTTCCGTGGCCTaGCAGACTACAGTGTCACTACAGCCAACAATTCTT | + |
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Preference number: 3 (lower is better) Translates to: KPVFPAGLASVA*QTTVSLQPTIL Trigger: AAGAATTGTTGGCTGTAGTGACACTGTAGTCTGCCAGGCCACGGAAGCCAGTCCTGCCGGAAACACCGGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR TCA 72 bp | CCCAAGATTCCCTACAGCCATTTGCCAATGGCGTCATaGAGTCGCAGGAACAGATGCATCAGGCTCGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: PKIPYSHLPMAS*SRRNRCIRLVP Trigger: AGGGACGAGCCTGATGCATCTGTTCCTGCGACTTCATGACGCCATTGGCAAATGGCTGTAGGGAATCTTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR GCA 72 bp | CCTCCCCTCCACAACCCAAGATTCCCTACAGCCATTTaGCAATGGCGTCATGAAGTCGCAGGAACAGATGCA | + |
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Preference number: 3 (lower is better) Translates to: PPLHNPRFPTAI*QWRHEVAGTDA Trigger: TGCATCTGTTCCTGCGACTTCATGACGCCATTGGCAAATGGCTGTAGGGAATCTTGGGTTGTGGAGGGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR-3UTR CAA 90 bp | GGTGCATATTTGTGGGGCAAACAGACTATCAGTCTGCTCTCTATTAGCATGGAGCCAGCAGGCATCCTCTaGGCTGCCCAAGTCCTAGAG | + |
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Preference number: 3 (lower is better) Translates to: GAYLWGKQTISLLSISMEPAGIL*AAQVLE Trigger: CTCTAGGACTTGGGCAGCCAAGAGGATGCCTGCTGG...CTCCATGCTAATAGAGAGCAGACTGATAGTCTGTTTGCCCCACAAATATGCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR GCA 72 bp | CTGAAGGGAAATGGAGCAAAGAACCCCCTTCTGAGGTaGATATTTGTGGGGCAAACAGACTATCAGTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: LKGNGAKNPLLR*IFVGQTDYQSA Trigger: AGCAGACTGATAGTCTGTTTGCCCCACAAATATGCACCTCAGAAGGGGGTTCTTTGCTCCATTTCCCTTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| 3UTR GCA 72 bp | GAGGTGCATATTTGTGGGGCAAACAGACTATCAGTCTaGTCTCTATTAGCATGGAGGATGGAAATAAGGTTA | + |
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Preference number: 3 (lower is better) Translates to: EVHICGANRLSV*SLLAWRMEIRL Trigger: TAACCTTATTTCCATCCTCCATGCTAATAGAGAGCAGACTGATAGTCTGTTTGCCCCACAAATATGCACCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR TCA 90 bp | TGGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACTGGCTTCCGTGGCCTGGCCTTGCACAGCTGGGTaGCAAGCGCTCCATAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: WAASQKPVFPAGLASVAWPCTAG*QALHRS Trigger: TGACCTATGGAGCGCTTGTCACCCAGCTGTGCAAGG...CCAGGCCACGGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR GCA 90 bp | GCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACTGGCTTCCGTGGCCTGGCAGTTTTCTTGCTCTCCGTaGCACGGTTCGCCTGCCTCG | + |
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Preference number: 4 (lower is better) Translates to: AASQKPVFPAGLASVAWQFSCSP*HGSPAS Trigger: CGAGGCAGGCGAACCGTGGCACGGAGAGCAAGAAAA...CTGCCAGGCCACGGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR TCA 90 bp | AGGGGCAGAGGAAGCGAGCGCCTGCCTCTCTCATCCCAGCAGGCATCCTCTTGGGGAGGTTGGAGTAAATaGGGGCCGAGTGGTTATCGG | + |
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Preference number: 4 (lower is better) Translates to: RGRGSERLPLSSQQASSWGGWSK*GPSGYR Trigger: CCGATAACCACTCGGCCCTCATTTACTCCAACCTCC...CCAAGAGGATGCCTGCTGGGATGAGAGAGGCAGGCGCTCGCTTCCTCTGCCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR CCA 90 bp | GAGGAAGCGAGCGCCTGCCTCTCTCATCCCAGCAGGCATCCTCTTGGCTGCCCACCCTTCAGAGTGTCCTaGACAAACTTGGCCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: EEASACLSHPSRHPLGCPPFRVS*TNLAST Trigger: TGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGG...TGGGCAGCCAAGAGGATGCCTGCTGGGATGAGAGAGGCAGGCGCTCGCTTCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR TCA 90 bp | GAGGAAGCGAGCGCCTGCCTCTCTCATCCCAGCAGGCATCCTCTTGGCTGCCCAGGTTGTTTTCCAGGATaGGGGAGAATTCATCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: EEASACLSHPSRHPLGCPGCFPG*GRIHLR Trigger: CCGGAGATGAATTCTCCCTCATCCTGGAAAACAACC...TGGGCAGCCAAGAGGATGCCTGCTGGGATGAGAGAGGCAGGCGCTCGCTTCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR GCA 90 bp | TGTTGCCTCCAAACAGCAGGGAGGAATGAGACCTGGGCGGCTTCCCAGAAGCCGCCCATTCTGTCCAGCTaGTTGTTCACGTCTTCGTCG | + |
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Preference number: 4 (lower is better) Translates to: CCLQTAGRNETWAASQKPPILSS*LFTSSS Trigger: CGACGAAGACGTGAACAAGCAGCTGGACAGAATGGG...CGGCTTCTGGGAAGCCGCCCAGGTCTCATTCCTCCCTGCTGTTTGGAGGCAACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR CCA 90 bp | GTCACTGAGTTCCAGGGGCAGAGGAAGCGAGCGCCTGCCTCTCTCATCCCAGCACCAGTTGGTGATGCTTaGAGTGATGCCCAGGTACAT | + |
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Preference number: 4 (lower is better) Translates to: VTEFQGQRKRAPASLIPAPVGDA*SDAQVH Trigger: ATGTACCTGGGCATCACTCCAAGCATCACCAACTGG...TGCTGGGATGAGAGAGGCAGGCGCTCGCTTCCTCTGCCCCTGGAACTCAGTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR GCA 90 bp | AGGAAGCGAGCGCCTGCCTCTCTCATCCCAGCAGGCATCCTCTTGGCTGCCCAACTTAGCAATAACATCTaGAGTTTCCCGAAAGTCATG | + |
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Preference number: 4 (lower is better) Translates to: RKRAPASLIPAGILLAAQLSNNI*SFPKVM Trigger: CATGACTTTCGGGAAACTGCAGATGTTATTGCTAAG...TTGGGCAGCCAAGAGGATGCCTGCTGGGATGAGAGAGGCAGGCGCTCGCTTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR TCA 90 bp | CTTCCGTGGCCTGGCAGACTACAGTGTCACTACAGCCAACAATTCTTACCCACCCTCCATAGGTCAGCGTaGACAGCTCAGAACTCATTT | + |
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Preference number: 4 (lower is better) Translates to: LPWPGRLQCHYSQQFLPTLHRSA*TAQNSF Trigger: AAATGAGTTCTGAGCTGTTCACGCTGACCTATGGAG...GGTGGGTAAGAATTGTTGGCTGTAGTGACACTGTAGTCTGCCAGGCCACGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR GCA 90 bp | CTCTTAGTCCAACCAAGGGCAAGTACATCCTGCCCTTCTGAAGGGAAATGGAGCCAGAACTCATTTTCTTaGTCTCCGTGCCACGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: LLVQPRASTSCPSEGKWSQNSFS*SPCHGS Trigger: CGAACCGTGGCACGGAGAGCAAGAAAATGAGTTCTG...GCTCCATTTCCCTTCAGAAGGGCAGGATGTACTTGCCCTTGGTTGGACTAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR CCA 90 bp | ACTACAGTGTCACTACAGCCAACAATTCTTACCCACCCCTTCCCAGCGTTCTCCTTACTCTTCTCCAGCTaGGAGGTTGTCTTCAATCCG | + |
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Preference number: 4 (lower is better) Translates to: TTVSLQPTILTHPFPAFSLLFSS*EVVFNP Trigger: CGGATTGAAGACAACCTCCCAGCTGGAGAAGAGTAA...GGAGAACGCTGGGAAGGGGTGGGTAAGAATTGTTGGCTGTAGTGACACTGTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR CCA 90 bp | GGTGCATATTTGTGGGGCAAACAGACTATCAGTCTGCTCTCTATTAGCATGGAGTGTCCTGGACAAACTTaGCCTCCACAGCCATCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GAYLWGKQTISLLSISMECPGQT*PPQPSG Trigger: TCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACA...CTCCATGCTAATAGAGAGCAGACTGATAGTCTGTTTGCCCCACAAATATGCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR TCA 90 bp | ACTACAGTGTCACTACAGCCAACAATTCTTACCCACCCCTTCCCAGCGTTCTCCGTTTCCCGAAAGTCATaGCATCTTCCAACATTTGAC | + |
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Preference number: 4 (lower is better) Translates to: TTVSLQPTILTHPFPAFSVSRKS*HLPTFD Trigger: GTCAAATGTTGGAAGATGTCATGACTTTCGGGAAAC...GGAGAACGCTGGGAAGGGGTGGGTAAGAATTGTTGGCTGTAGTGACACTGTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR CAA 90 bp | ACCTGGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACTGGCTTCCGTGGCCTCTCCAGCTGGGAGGTaGTCTTCAATCCGCCTGATG | + |
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Preference number: 5 (lower is better) Translates to: TWAASQKPVFPAGLASVASPAGR*SSIRLM Trigger: CATCAGGCGGATTGAAGACAACCTCCCAGCTGGAGA...GGCCACGGAAGCCAGTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCCAGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR CAA 90 bp | CAGGGAGGAATGAGACCTGGGCGGCTTCCCAGAAGCCGGTGTTTCCGGCAGGACGTGTCCTGGACAAACTaGGCCTCCACAGCCATCTGG | + |
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Preference number: 5 (lower is better) Translates to: QGGMRPGRLPRSRCFRQDVSWTN*ASTAIW Trigger: CCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACAC...GTCCTGCCGGAAACACCGGCTTCTGGGAAGCCGCCCAGGTCTCATTCCTCCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS CCA 90 bp | AACCTCATCCTGATTTCTGTCACGCCATCTCCCTTCAGAGTGTCCTaGACAAACTTGGCCTCCACAGCCATCTGGACCATCTCCAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: NLILISVTPSPFRVS*TNLASTAIWTISRA Trigger: AGCCCTGGAGATGGTCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGGAGATGGCGTGACAGAAATCAGGATGAGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR CAA 90 bp | TTAAAAGTCACTGAGTTCCAGGGGCAGAGGAAGCGAGCGCCTGCCTCTCTCATCTCAGAACTCATTTTCTaGCTCTCCGTGCCACGGTTC | + |
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Preference number: 5 (lower is better) Translates to: LKVTEFQGQRKRAPASLISELIF*LSVPRF Trigger: GAACCGTGGCACGGAGAGCAAGAAAATGAGTTCTGA...GATGAGAGAGGCAGGCGCTCGCTTCCTCTGCCCCTGGAACTCAGTGACTTTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS-3UTR CAA 90 bp | GGTGCATATTTGTGGGGCAAACAGACTATCAGTCTGCTCTCTATTAGCATGGAGATGCCCAGGTACATCTaGAACGCCACCTTAGCAATA | + |
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Preference number: 5 (lower is better) Translates to: GAYLWGKQTISLLSISMEMPRYI*NATLAI Trigger: TATTGCTAAGGTGGCGTTCAAGATGTACCTGGGCAT...CTCCATGCTAATAGAGAGCAGACTGATAGTCTGTTTGCCCCACAAATATGCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS CAA 90 bp | CTGATTTCTGTCACGCCATCTCCCTTCAGAGTGTCCTGGACAAACTaGGCCTCCACAGCCATCTGGACCATCTCCAGGGCTCCCCGCAAC | + |
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Preference number: 6 (lower is better) Translates to: LISVTPSPFRVSWTN*ASTAIWTISRAPRN Trigger: GTTGCGGGGAGCCCTGGAGATGGTCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGGAGATGGCGTGACAGAAATCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS CCA 72 bp | TCACGCCATCTCCCTTCAGAGTGTCCTGGACAAACTTaGCCTCCACAGCCATCTGGACCATCTCCAGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: SRHLPSECPGQT*PPQPSGPSPGL Trigger: GAGCCCTGGAGATGGTCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGGAGATGGCGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS CAA 72 bp | GTCACGCCATCTCCCTTCAGAGTGTCCTGGACAAACTaGGCCTCCACAGCCATCTGGACCATCTCCAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: VTPSPFRVSWTN*ASTAIWTISRA Trigger: AGCCCTGGAGATGGTCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGGAGATGGCGTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS TCA 72 bp | GCTCCACAAAGTCCACCAGAGGGTTGTTTTCCAGGATaGGGGAGAATTCATCTCCGGCTGGGCTCCAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: APQSPPEGCFPG*GRIHLRLGSSW Trigger: CCAACTGGAGCCCAGCCGGAGATGAATTCTCCCTCATCCTGGAAAACAACCCTCTGGTGGACTTTGTGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS CCA 72 bp | GTTGTTTTCCAGGATGAGGGAGAATTCATCTCCGGCTaGGCTCCAGTTGGTGATGCTTGGAGTGATGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: VVFQDEGEFISG*APVGDAWSDAQ Trigger: CTGGGCATCACTCCAAGCATCACCAACTGGAGCCCAGCCGGAGATGAATTCTCCCTCATCCTGGAAAACAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS CCA 72 bp | CTGATTTCTGTCACGCCATCTCCCTTCAGAGTGTCCTaGACAAACTTGGCCTCCACAGCCATCTGGACCATC | + |
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Preference number: 6 (lower is better) Translates to: LISVTPSPFRVS*TNLASTAIWTI Trigger: GATGGTCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGGAGATGGCGTGACAGAAATCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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| CDS GCA 72 bp | CAGGTACATCTTGAACGCCACCTTAGCAATAACATCTaGAGTTTCCCGAAAGTCATGACATCTTCCAACATT | + |
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Preference number: 6 (lower is better) Translates to: QVHLERHLSNNI*SFPKVMTSSNI Trigger: AATGTTGGAAGATGTCATGACTTTCGGGAAACTGCAGATGTTATTGCTAAGGTGGCGTTCAAGATGTACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030660.9 |
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