RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRAPPC2L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015013

Ensembl transcript IDs: ENSMUST00000015157.10

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTCAGGCACCACCTCCACACAGCCACAGGACTTCTGAGGAGAGCCTaGTTTGTCCCTGGGGATGCATGGCCTAGGAGCAGCACTGGGGAC +
Preference number: 1 (lower is better)
Translates to: FRHHLHTATGLLRRA*FVPGDAWPRSSTGD
Trigger: GTCCCCAGTGCTGCTCCTAGGCCATGCATCCCCAGGGACAAACCAGGCTCTCCTCAGAAGTCCTGTGGCTGTGTGGAGGTGGTGCCTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR GCA 90 bp TGGCTCTCGGCTCCCCATACCCTACACCCTTCTGAACCACCCACCTaGTCAGACAATGGAGGCCCACAGTCTCCTATCACAGCATCCTCC +
Preference number: 1 (lower is better)
Translates to: WLSAPHTLHPSEPPT*SDNGGPQSPITASS
Trigger: GGAGGATGCTGTGATAGGAGACTGTGGGCCTCCATTGTCTGAGCAGGTGGGTGGTTCAGAAGGGTGTAGGGTATGGGGAGCCGAGAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR GCA 90 bp GCTAAGGCTAGCAATGAATGGCAGATCCAGAACGTCGAGGGCCCTTaGCCAAGAAGGAAGGTGTGTGTCTGTCCGCCCTGGATCGTCTCT +
Preference number: 1 (lower is better)
Translates to: AKASNEWQIQNVEGP*PRRKVCVCPPWIVS
Trigger: AGAGACGATCCAGGGCGGACAGACACACACCTTCCTTCTTGGGCAAGGGCCCTCGACGTTCTGGATCTGCCATTCATTGCTAGCCTTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR GCA 90 bp GGTCTCCATGCTCACAGACAGGAAAGGCTCCTGGAGGTTCTCCTCTaGGACATGGGAGACACGCTTTGCTGCTGTGTCCCACAGAGCTTT +
Preference number: 1 (lower is better)
Translates to: GLHAHRQERLLEVLL*DMGDTLCCCVPQSF
Trigger: AAAGCTCTGTGGGACACAGCAGCAAAGCGTGTCTCCCATGTCGCAGAGGAGAACCTCCAGGAGCCTTTCCTGTCTGTGAGCATGGAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR TCA 90 bp AGAAGGAAGGTGTGTGTCTGTCCGCCCTGGATCGTCTCTATTCTCTaGAGCTGGCTCTCGGCTCCCCATACCCTACACCCTTCTGAACCA +
Preference number: 1 (lower is better)
Translates to: RRKVCVCPPWIVSIL*SWLSAPHTLHPSEP
Trigger: TGGTTCAGAAGGGTGTAGGGTATGGGGAGCCGAGAGCCAGCTTCAGAGAATAGAGACGATCCAGGGCGGACAGACACACACCTTCCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 90 bp GGTCACAGCCCCTACATCACTCTAGAGTCTCTGAGACCAGCTAGCTaGTCCTCAGCTGAGCCCTCTCTGCTGACACAGGACAACGTAGAT +
Preference number: 1 (lower is better)
Translates to: GHSPYITLESLRPAS*SSAEPSLLTQDNVD
Trigger: ATCTACGTTGTCCTGTGTCAGCAGAGAGGGCTCAGCTGAGGACCAGCTAGCTGGTCTCAGAGACTCTAGAGTGATGTAGGGGCTGTGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 90 bp TGTAATAACCTTGTGCTCTTGGAGAGAAGCCCTGAGATGCAGAGATaGACTCTCTCCCACTCCACCCAGCTCACGTGGACAAATCCCAGC +
Preference number: 1 (lower is better)
Translates to: CNNLVLLERSPEMQR*TLSHSTQLTWTNPS
Trigger: GCTGGGATTTGTCCACGTGAGCTGGGTGGAGTGGGAGAGAGTCCATCTCTGCATCTCAGGGCTTCTCTCCAAGAGCACAAGGTTATTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR GCA 90 bp TGGGTGGTCTGGCTTCTCTTCGTACTGCATTTTGTAATAACCTTGTaGTCTTGGAGAGAAGCCCTGAGATGCAGAGATGGACTCTCTCCC +
Preference number: 1 (lower is better)
Translates to: WVVWLLFVLHFVITL*SWREALRCRDGLSP
Trigger: GGGAGAGAGTCCATCTCTGCATCTCAGGGCTTCTCTCCAAGAGCACAAGGTTATTACAAAATGCAGTACGAAGAGAAGCCAGACCACCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 90 bp GTCTGGCTTCTCTTCGTACTGCATTTTGTAATAACCTTGTGCTCTTaGAGAGAAGCCCTGAGATGCAGAGATGGACTCTCTCCCACTCCA +
Preference number: 1 (lower is better)
Translates to: VWLLFVLHFVITLCS*REALRCRDGLSPTP
Trigger: TGGAGTGGGAGAGAGTCCATCTCTGCATCTCAGGGCTTCTCTCCAAGAGCACAAGGTTATTACAAAATGCAGTACGAAGAGAAGCCAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 90 bp TCAAAGCAACTTCATTTCTCACTTTTATCGATCAGGTGGGTGGTCTaGCTTCTCTTCGTACTGCATTTTGTAATAACCTTGTGCTCTTGG +
Preference number: 1 (lower is better)
Translates to: SKQLHFSLLSIRWVV*LLFVLHFVITLCSW
Trigger: CCAAGAGCACAAGGTTATTACAAAATGCAGTACGAAGAGAAGCCAGACCACCCACCTGATCGATAAAAGTGAGAAATGAAGTTGCTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR TCA 90 bp CTCTCTCCCACTCCACCCAGCTCACGTGGACAAATCCCAGCCTGCTGGGCCCAGGGGGAGGTCCTTGGCTaGGGACTTGGGGAAGCCAGA +
Preference number: 2 (lower is better)
Translates to: LSPTPPSSRGQIPACWAQGEVLG*GLGEAR
Trigger: TCTGGCTTCCCCAAGTCCTCAGCCAAGGACCTCCCC...CTGGGCCCAGCAGGCTGGGATTTGTCCACGTGAGCTGGGTGGAGTGGGAGAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR CCA 90 bp CTCTCTCCCACTCCACCCAGCTCACGTGGACAAATCCCAGCCTGCTGGGCCCAGGACAGGAAAGGCTCCTaGAGGTTCTCCTCTGCGACA +
Preference number: 2 (lower is better)
Translates to: LSPTPPSSRGQIPACWAQDRKGS*RFSSAT
Trigger: TGTCGCAGAGGAGAACCTCCAGGAGCCTTTCCTGTC...CTGGGCCCAGCAGGCTGGGATTTGTCCACGTGAGCTGGGTGGAGTGGGAGAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 90 bp GGTTTGTCCCTGGGGATGCATGGCCTAGGAGCAGCACTGGGGACCTaGCTGGTCTCCATGCTCACAGACAGGAAAGGCTCCTGGAGGTTC +
Preference number: 2 (lower is better)
Translates to: GLSLGMHGLGAALGT*LVSMLTDRKGSWRF
Trigger: GAACCTCCAGGAGCCTTTCCTGTCTGTGAGCATGGAGACCAGCAAGGTCCCCAGTGCTGCTCCTAGGCCATGCATCCCCAGGGACAAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 90 bp CTGCTGGGCCCAGGCATGAGACACTCTACAGCGAAGGGGAGGTCCTaGGCTGAGGACTTGGGGAAGCCAGAGACTCTGAAGACAGCATGG +
Preference number: 2 (lower is better)
Translates to: LLGPGMRHSTAKGRS*AEDLGKPETLKTAW
Trigger: CCATGCTGTCTTCAGAGTCTCTGGCTTCCCCAAGTCCTCAGCCAAGGACCTCCCCTTCGCTGTAGAGTGTCTCATGCCTGGGCCCAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR TCA 90 bp AGAGCCTGGTTTGTCCCTGGGGATGCATGGCCTAGGAGCAGCACTGGGGACCTTTACCCTACACCCTTCTaGACCACCCACCTGCTCAGA +
Preference number: 2 (lower is better)
Translates to: RAWFVPGDAWPRSSTGDLYPTPF*TTHLLR
Trigger: TCTGAGCAGGTGGGTGGTTCAGAAGGGTGTAGGGTA...AAGGTCCCCAGTGCTGCTCCTAGGCCATGCATCCCCAGGGACAAACCAGGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR TCA 90 bp AGAGCCTGGTTTGTCCCTGGGGATGCATGGCCTAGGAGCAGCACTGGGGACCTTATCGTCTCTATTCTCTaGAGCTGGCTCTCGGCTCCC +
Preference number: 2 (lower is better)
Translates to: RAWFVPGDAWPRSSTGDLIVSIL*SWLSAP
Trigger: GGGAGCCGAGAGCCAGCTTCAGAGAATAGAGACGAT...AAGGTCCCCAGTGCTGCTCCTAGGCCATGCATCCCCAGGGACAAACCAGGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR GCA 90 bp TCCCACAGAGCTTTACACCTCTTACCACCCCCTGAGGCTAGCGCTGGGCACAGCAACGTCGAGGGCCCTTaGCCAAGAAGGAAGGTGTGT +
Preference number: 2 (lower is better)
Translates to: SHRALHLLPPPEASAGHSNVEGP*PRRKVC
Trigger: ACACACCTTCCTTCTTGGGCAAGGGCCCTCGACGTT...GCTGTGCCCAGCGCTAGCCTCAGGGGGTGGTAAGAGGTGTAAAGCTCTGTGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 90 bp GGAAAGGCTCCTGGAGGTTCTCCTCTGCGACATGGGAGACACGCTTaGCTGCTGTGTCCCACAGAGCTTTACACCTCTTACCACCCCCTG +
Preference number: 2 (lower is better)
Translates to: GKAPGGSPLRHGRHA*LLCPTELYTSYHPL
Trigger: CAGGGGGTGGTAAGAGGTGTAAAGCTCTGTGGGACACAGCAGCAAAGCGTGTCTCCCATGTCGCAGAGGAGAACCTCCAGGAGCCTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 90 bp GGAGCCATGACAGCTAAAGGGGACTCAGGCTCAGGACAGGTCCTCTaGGCCTCTGCCTCTCCTAGGACACCAGTATTTAGCTACGCTGCC +
Preference number: 2 (lower is better)
Translates to: GAMTAKGDSGSGQVL*ASASPRTPVFSYAA
Trigger: GGCAGCGTAGCTAAATACTGGTGTCCTAGGAGAGGCAGAGGCCAAGAGGACCTGTCCTGAGCCTGAGTCCCCTTTAGCTGTCATGGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 90 bp GGCATGAGACACTCTACAGCGAAGGGGAGGTCCTTGGCTGAGGACTaGGGGAAGCCAGAGACTCTGAAGACAGCATGGAGCCATGACAGC +
Preference number: 2 (lower is better)
Translates to: GMRHSTAKGRSLAED*GKPETLKTAWSHDS
Trigger: GCTGTCATGGCTCCATGCTGTCTTCAGAGTCTCTGGCTTCCCCAAGTCCTCAGCCAAGGACCTCCCCTTCGCTGTAGAGTGTCTCATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR CCA 90 bp AAATCCCAGCCTGCTGGGCCCAGGCATGAGACACTCTACAGCGAAGGGGAGGTCCACCTGCTCAGACAATaGAGGCCCACAGTCTCCTAT +
Preference number: 2 (lower is better)
Translates to: KSQPAGPRHETLYSEGEVHLLRQ*RPTVSY
Trigger: ATAGGAGACTGTGGGCCTCCATTGTCTGAGCAGGTG...GACCTCCCCTTCGCTGTAGAGTGTCTCATGCCTGGGCCCAGCAGGCTGGGATTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR TCA 90 bp CATGGAAGAGCCAGCTTCAGGCACCACCTCCACACAGCCACAGGACTTCTGAGGATCATCCAACAGGGGTaGACGCAGGCTTCTCTTCTG +
Preference number: 2 (lower is better)
Translates to: HGRASFRHHLHTATGLLRIIQQG*TQASLL
Trigger: CAGAAGAGAAGCCTGCGTTCACCCCTGTTGGATGAT...CCTCAGAAGTCCTGTGGCTGTGTGGAGGTGGTGCCTGAAGCTGGCTCTTCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR TCA 90 bp CTAATACTCAGGGAGGGTGACCTCCCAAGATCCCACCTGACTGGTGCTCCTTCCGGAAGCCAGAGACTCTaGAGACAGCATGGAGCCATG +
Preference number: 2 (lower is better)
Translates to: LILREGDLPRSHLTGAPSGSQRL*RQHGAM
Trigger: CATGGCTCCATGCTGTCTTCAGAGTCTCTGGCTTCC...GGAAGGAGCACCAGTCAGGTGGGATCTTGGGAGGTCACCCTCCCTGAGTATTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR GCA 90 bp CTAATACTCAGGGAGGGTGACCTCCCAAGATCCCACCTGACTGGTGCTCCTTCCATGGGAGACACGCTTTaGTGCTGTGTCCCACAGAGC +
Preference number: 2 (lower is better)
Translates to: LILREGDLPRSHLTGAPSMGDTL*CCVPQS
Trigger: GCTCTGTGGGACACAGCAGCAAAGCGTGTCTCCCAT...GGAAGGAGCACCAGTCAGGTGGGATCTTGGGAGGTCACCCTCCCTGAGTATTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR TCA 90 bp CTAATACTCAGGGAGGGTGACCTCCCAAGATCCCACCTGACTGGTGCTCCTTCCCAGTCAGCTGCATGTTaGACTTCTCAAAGCAACTTC +
Preference number: 2 (lower is better)
Translates to: LILREGDLPRSHLTGAPSQSAAC*TSQSNF
Trigger: GAAGTTGCTTTGAGAAGTTCAACATGCAGCTGACTG...GGAAGGAGCACCAGTCAGGTGGGATCTTGGGAGGTCACCCTCCCTGAGTATTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 90 bp GGTCTGGCTTCTCTTCGTACTGCATTTTGTAATAACCTTGTGCTCTaGGAGAGAAGCCCTGAGATGCAGAGATGGACTCTCTCCCACTCC +
Preference number: 2 (lower is better)
Translates to: GLASLRTAFCNNLVL*ERSPEMQRWTLSHS
Trigger: GGAGTGGGAGAGAGTCCATCTCTGCATCTCAGGGCTTCTCTCCAAGAGCACAAGGTTATTACAAAATGCAGTACGAAGAGAAGCCAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR GCA 90 bp CTAAAGGCTTTAACCAAGTCCATCTGGGCTCTGTCCATGTCAGTCAGCTGCATGTTTGTAATAACCTTGTaGTCTTGGAGAGAAGCCCTG +
Preference number: 2 (lower is better)
Translates to: LKALTKSIWALSMSVSCMFVITL*SWREAL
Trigger: CAGGGCTTCTCTCCAAGAGCACAAGGTTATTACAAA...CATGCAGCTGACTGACATGGACAGAGCCCAGATGGACTTGGTTAAAGCCTTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR TCA 72 bp GCTTCAGGCACCACCTCCACACAGCCACAGGACTTCTaGGGAGAGCCTGGTTTGTCCCTGGGGATGCATGGC +
Preference number: 3 (lower is better)
Translates to: ASGTTSTQPQDF*GEPGLSLGMHG
Trigger: GCCATGCATCCCCAGGGACAAACCAGGCTCTCCTCAGAAGTCCTGTGGCTGTGTGGAGGTGGTGCCTGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 72 bp CACCTCCACACAGCCACAGGACTTCTGAGGAGAGCCTaGTTTGTCCCTGGGGATGCATGGCCTAGGAGCAGC +
Preference number: 3 (lower is better)
Translates to: HLHTATGLLRRA*FVPGDAWPRSS
Trigger: GCTGCTCCTAGGCCATGCATCCCCAGGGACAAACCAGGCTCTCCTCAGAAGTCCTGTGGCTGTGTGGAGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 72 bp CGCTGGGCACAGCACTGGGCTAAGGCTAGCAATGAATaGCAGATCCAGAACGTCGAGGGCCCTTGCCCAAGA +
Preference number: 3 (lower is better)
Translates to: RWAQHWAKASNE*QIQNVEGPCPR
Trigger: TCTTGGGCAAGGGCCCTCGACGTTCTGGATCTGCCATTCATTGCTAGCCTTAGCCCAGTGCTGTGCCCAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR CAA 90 bp AGATGGACTCTCTCCCACTCCACCCAGCTCACGTGGACAAATCCCAGCCTGCTGCATGGGAGACACGCTTaGCTGCTGTGTCCCACAGAG +
Preference number: 3 (lower is better)
Translates to: RWTLSHSTQLTWTNPSLLHGRHA*LLCPTE
Trigger: CTCTGTGGGACACAGCAGCAAAGCGTGTCTCCCATG...CAGCAGGCTGGGATTTGTCCACGTGAGCTGGGTGGAGTGGGAGAGAGTCCATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR CAA 90 bp CTAATACTCAGGGAGGGTGACCTCCCAAGATCCCACCTGACTGGTGCTCCTTCCGCAGCACTGGGGACCTaGCTGGTCTCCATGCTCACA +
Preference number: 3 (lower is better)
Translates to: LILREGDLPRSHLTGAPSAALGT*LVSMLT
Trigger: TGTGAGCATGGAGACCAGCAAGGTCCCCAGTGCTGC...GGAAGGAGCACCAGTCAGGTGGGATCTTGGGAGGTCACCCTCCCTGAGTATTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR GCA 72 bp AGCAATGAATGGCAGATCCAGAACGTCGAGGGCCCTTaGCCAAGAAGGAAGGTGTGTGTCTGTCCGCCCTGG +
Preference number: 3 (lower is better)
Translates to: SNEWQIQNVEGP*PRRKVCVCPPW
Trigger: CCAGGGCGGACAGACACACACCTTCCTTCTTGGGCAAGGGCCCTCGACGTTCTGGATCTGCCATTCATTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR TCA 72 bp CATGAGACACTCTACAGCGAAGGGGAGGTCCTTGGCTaGGGACTTGGGGAAGCCAGAGACTCTGAAGACAGC +
Preference number: 3 (lower is better)
Translates to: HETLYSEGEVLG*GLGEARDSEDS
Trigger: GCTGTCTTCAGAGTCTCTGGCTTCCCCAAGTCCTCAGCCAAGGACCTCCCCTTCGCTGTAGAGTGTCTCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR TCA 72 bp GATGCAGTTTCCAGGGCAGCTAATACTCAGGGAGGGTaGCCTCCCAAGATCCCACCTGACTGGTGCTCCTTC +
Preference number: 3 (lower is better)
Translates to: DAVSRAANTQGG*PPKIPPDWCSF
Trigger: GAAGGAGCACCAGTCAGGTGGGATCTTGGGAGGTCACCCTCCCTGAGTATTAGCTGCCCTGGAAACTGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR GCA 72 bp GCTCCCCATACCCTACACCCTTCTGAACCACCCACCTaGTCAGACAATGGAGGCCCACAGTCTCCTATCACA +
Preference number: 3 (lower is better)
Translates to: APHTLHPSEPPT*SDNGGPQSPIT
Trigger: TGTGATAGGAGACTGTGGGCCTCCATTGTCTGAGCAGGTGGGTGGTTCAGAAGGGTGTAGGGTATGGGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 72 bp CCCTACATCACTCTAGAGTCTCTGAGACCAGCTAGCTaGTCCTCAGCTGAGCCCTCTCTGCTGACACAGGAC +
Preference number: 3 (lower is better)
Translates to: PYITLESLRPAS*SSAEPSLLTQD
Trigger: GTCCTGTGTCAGCAGAGAGGGCTCAGCTGAGGACCAGCTAGCTGGTCTCAGAGACTCTAGAGTGATGTAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 72 bp CTTGTGCTCTTGGAGAGAAGCCCTGAGATGCAGAGATaGACTCTCTCCCACTCCACCCAGCTCACGTGGACA +
Preference number: 3 (lower is better)
Translates to: LVLLERSPEMQR*TLSHSTQLTWT
Trigger: TGTCCACGTGAGCTGGGTGGAGTGGGAGAGAGTCCATCTCTGCATCTCAGGGCTTCTCTCCAAGAGCACAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR GCA 72 bp GAGGCCTTTAGTAGAAAAGCACAGGGGACACAGCCCTaGCCACAGGGTACACTCAGGGAGCAGAAAGGGAAT +
Preference number: 3 (lower is better)
Translates to: EAFSRKAQGTQP*PQGTLREQKGN
Trigger: ATTCCCTTTCTGCTCCCTGAGTGTACCCTGTGGGCAGGGCTGTGTCCCCTGTGCTTTTCTACTAAAGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 72 bp TTGCTGGTCTCCATGCTCACAGACAGGAAAGGCTCCTaGAGGTTCTCCTCTGCGACATGGGAGACACGCTTT +
Preference number: 3 (lower is better)
Translates to: LLVSMLTDRKGS*RFSSATWETRF
Trigger: AAAGCGTGTCTCCCATGTCGCAGAGGAGAACCTCCAGGAGCCTTTCCTGTCTGTGAGCATGGAGACCAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR-3UTR CAA 90 bp CATAAGATGCAGTTTCCAGGGCAGCTAATACTCAGGGAGGGTGACCTCCCAAGACATTTTGTAATAACCTaGTGCTCTTGGAGAGAAGCC +
Preference number: 3 (lower is better)
Translates to: HKMQFPGQLILREGDLPRHFVIT*CSWREA
Trigger: GGCTTCTCTCCAAGAGCACAAGGTTATTACAAAATG...TCTTGGGAGGTCACCCTCCCTGAGTATTAGCTGCCCTGGAAACTGCATCTTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR GCA 72 bp ACCAAGTCCATCTGGGCTCTGTCCATGTCAGTCAGCTaGATGTTGAACTTCTCAAAGCAACTTCATTTCTCA +
Preference number: 3 (lower is better)
Translates to: TKSIWALSMSVS*MLNFSKQLHFS
Trigger: TGAGAAATGAAGTTGCTTTGAGAAGTTCAACATGCAGCTGACTGACATGGACAGAGCCCAGATGGACTTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CCA 72 bp TCAAAGCAACTTCATTTCTCACTTTTATCGATCAGGTaGGTGGTCTGGCTTCTCTTCGTACTGCATTTTGTA +
Preference number: 3 (lower is better)
Translates to: SKQLHFSLLSIR*VVWLLFVLHFV
Trigger: TACAAAATGCAGTACGAAGAGAAGCCAGACCACCCACCTGATCGATAAAAGTGAGAAATGAAGTTGCTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 72 bp CTGGGGATGCATGGCCTAGGAGCAGCACTGGGGACCTaGCTGGTCTCCATGCTCACAGACAGGAAAGGCTCC +
Preference number: 4 (lower is better)
Translates to: LGMHGLGAALGT*LVSMLTDRKGS
Trigger: GGAGCCTTTCCTGTCTGTGAGCATGGAGACCAGCAAGGTCCCCAGTGCTGCTCCTAGGCCATGCATCCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR CCA 90 bp AGATGGACTCTCTCCCACTCCACCCAGCTCACGTGGACAAATCCCAGCCTGCTGAGGTACAGCTCCCTCTaGTCCACCAGTGCTTTCCCC +
Preference number: 4 (lower is better)
Translates to: RWTLSHSTQLTWTNPSLLRYSSL*STSAFP
Trigger: GGGGAAAGCACTGGTGGACCAGAGGGAGCTGTACCT...CAGCAGGCTGGGATTTGTCCACGTGAGCTGGGTGGAGTGGGAGAGAGTCCATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR TCA 90 bp GTCCGCCCTGGATCGTCTCTATTCTCTGAAGCTGGCTCTCGGCTCCCCATACCCCCATGTAGTGGAACTTaGGCTCACTCTCTGTCGGAG +
Preference number: 4 (lower is better)
Translates to: VRPGSSLFSEAGSRLPIPPCSGT*AHSLSE
Trigger: CTCCGACAGAGAGTGAGCTCAAGTTCCACTACATGG...GGGTATGGGGAGCCGAGAGCCAGCTTCAGAGAATAGAGACGATCCAGGGCGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR GCA 90 bp TCTTGGCCTCTGCCTCTCCTAGGACACCAGTATTTAGCTACGCTGCCCGGAGGCCCTCTGGTCCACCAGTaGTTTCCCCATGGCAGAGAT +
Preference number: 4 (lower is better)
Translates to: SWPLPLLGHQYLATLPGGPLVHQ*FPHGRD
Trigger: ATCTCTGCCATGGGGAAAGCACTGGTGGACCAGAGG...GCCTCCGGGCAGCGTAGCTAAATACTGGTGTCCTAGGAGAGGCAGAGGCCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 72 bp CACTCTACAGCGAAGGGGAGGTCCTTGGCTGAGGACTaGGGGAAGCCAGAGACTCTGAAGACAGCATGGAGC +
Preference number: 4 (lower is better)
Translates to: HSTAKGRSLAED*GKPETLKTAWS
Trigger: GCTCCATGCTGTCTTCAGAGTCTCTGGCTTCCCCAAGTCCTCAGCCAAGGACCTCCCCTTCGCTGTAGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 72 bp CCAGGCATGAGACACTCTACAGCGAAGGGGAGGTCCTaGGCTGAGGACTTGGGGAAGCCAGAGACTCTGAAG +
Preference number: 4 (lower is better)
Translates to: PGMRHSTAKGRS*AEDLGKPETLK
Trigger: CTTCAGAGTCTCTGGCTTCCCCAAGTCCTCAGCCAAGGACCTCCCCTTCGCTGTAGAGTGTCTCATGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR CCA 90 bp AAATCCCAGCCTGCTGGGCCCAGGCATGAGACACTCTACAGCGAAGGGGAGGTCCCAGTGCTTTCCCCATaGCAGAGATCTTCTCGTCTA +
Preference number: 4 (lower is better)
Translates to: KSQPAGPRHETLYSEGEVPVLSP*QRSSRL
Trigger: TAGACGAGAAGATCTCTGCCATGGGGAAAGCACTGG...GACCTCCCCTTCGCTGTAGAGTGTCTCATGCCTGGGCCCAGCAGGCTGGGATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR CCA 90 bp TCCTCTTGGCCTCTGCCTCTCCTAGGACACCAGTATTTAGCTACGCTGCCCGGAGAGGGTAATTCTCCTTaGCGATCACCGCGATGCACA +
Preference number: 4 (lower is better)
Translates to: SSWPLPLLGHQYLATLPGEGNSP*RSPRCT
Trigger: TGTGCATCGCGGTGATCGCCAAGGAGAATTACCCTC...TCCGGGCAGCGTAGCTAAATACTGGTGTCCTAGGAGAGGCAGAGGCCAAGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 72 bp CCTGGAGGTTCTCCTCTGCGACATGGGAGACACGCTTaGCTGCTGTGTCCCACAGAGCTTTACACCTCTTAC +
Preference number: 4 (lower is better)
Translates to: PGGSPLRHGRHA*LLCPTELYTSY
Trigger: GTAAGAGGTGTAAAGCTCTGTGGGACACAGCAGCAAAGCGTGTCTCCCATGTCGCAGAGGAGAACCTCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR GCA 90 bp CTAAAGGCTTTAACCAAGTCCATCTGGGCTCTGTCCATGTCAGTCAGCTGCATGAGGCCCTTGACTGGATaGGGTCTCCCGGGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: LKALTKSIWALSMSVSCMRPLTG*GLPGCR
Trigger: TCTACAACCCGGGAGACCGCATCCAGTCAAGGGCCT...CATGCAGCTGACTGACATGGACAGAGCCCAGATGGACTTGGTTAAAGCCTTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR CCA 90 bp ATACCACCCAGCTGTGGTCACAGCCCCTACATCACTCTAGAGTCTCTGAGACCAACACCTGGATCATCATaGAAGTCACCATGGTATCAA +
Preference number: 4 (lower is better)
Translates to: IPPSCGHSPYITLESLRPTPGSS*KSPWYQ
Trigger: TTGATACCATGGTGACTTCCATGATGATCCAGGTGT...TGGTCTCAGAGACTCTAGAGTGATGTAGGGGCTGTGACCACAGCTGGGTGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR CCA 90 bp CTAAAGGCTTTAACCAAGTCCATCTGGGCTCTGTCCATGTCAGTCAGCTGCATGTCATGGAAGTCACCATaGTATCAAAGGCCCTTGACT +
Preference number: 4 (lower is better)
Translates to: LKALTKSIWALSMSVSCMSWKSP*YQRPLT
Trigger: AGTCAAGGGCCTTTGATACCATGGTGACTTCCATGA...CATGCAGCTGACTGACATGGACAGAGCCCAGATGGACTTGGTTAAAGCCTTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 72 bp TCTCTTCGTACTGCATTTTGTAATAACCTTGTGCTCTaGGAGAGAAGCCCTGAGATGCAGAGATGGACTCTC +
Preference number: 4 (lower is better)
Translates to: SLRTAFCNNLVL*ERSPEMQRWTL
Trigger: GAGAGTCCATCTCTGCATCTCAGGGCTTCTCTCCAAGAGCACAAGGTTATTACAAAATGCAGTACGAAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
3UTR CAA 72 bp GTCTGGCTTCTCTTCGTACTGCATTTTGTAATAACCTaGTGCTCTTGGAGAGAAGCCCTGAGATGCAGAGAT +
Preference number: 4 (lower is better)
Translates to: VWLLFVLHFVIT*CSWREALRCRD
Trigger: ATCTCTGCATCTCAGGGCTTCTCTCCAAGAGCACAAGGTTATTACAAAATGCAGTACGAAGAGAAGCCAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR CAA 90 bp AGATCCAGAACGTCGAGGGCCCTTGCCCAAGAAGGAAGGTGTGTGTCTGTCCGCTGGTATCAAAGGCCCTaGACTGGATGCGGTCTCCCG +
Preference number: 5 (lower is better)
Translates to: RSRTSRALAQEGRCVSVRWYQRP*TGCGLP
Trigger: CGGGAGACCGCATCCAGTCAAGGGCCTTTGATACCA...GCGGACAGACACACACCTTCCTTCTTGGGCAAGGGCCCTCGACGTTCTGGATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR CAA 90 bp AGATGGACTCTCTCCCACTCCACCCAGCTCACGTGGACAAATCCCAGCCTGCTGTCCCGAAGGGCTGTATaGGAGGAATCCACGACCATG +
Preference number: 5 (lower is better)
Translates to: RWTLSHSTQLTWTNPSLLSRRAV*EESTTM
Trigger: CATGGTCGTGGATTCCTCCAATACAGCCCTTCGGGA...CAGCAGGCTGGGATTTGTCCACGTGAGCTGGGTGGAGTGGGAGAGAGTCCATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10
CDS-3UTR CAA 90 bp AGAGCCTGGTTTGTCCCTGGGGATGCATGGCCTAGGAGCAGCACTGGGGACCTTATACTGCGGATCTCGTaGTCCCGAAGGGCTGTATTG +
Preference number: 5 (lower is better)
Translates to: RAWFVPGDAWPRSSTGDLILRIS*SRRAVL
Trigger: CAATACAGCCCTTCGGGACAACGAGATCCGCAGTAT...AAGGTCCCCAGTGCTGCTCCTAGGCCATGCATCCCCAGGGACAAACCAGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015157.10