Pregenerated sensors for TRAPPC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079317Ensembl transcript IDs: ENSMUST00000112192.8, ENSMUST00000112194.2, ENSMUST00000116495.8
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGCAGGACGGTTATTCTCAGCCTCTGGCAGAGGTAGGCAAGCATaGAACACTTGGCATGGGCTTTCTGCTTCAGCTTCTTGGTACTGC | + |
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Preference number: 1 (lower is better) Translates to: TAGRLFSASGRGRQA*NTWHGLSASASWYC Trigger: GCAGTACCAAGAAGCTGAAGCAGAAAGCCCATGCCAAGTGTTCCATGCTTGCCTACCTCTGCCAGAGGCTGAGAATAACCGTCCTGCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112192.8 ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| 3UTR-3UTR GCA 90 bp | ACTAAGAGAAAGGAAACACTAGAATGTAAGGTGACAGAGGCACCACATTTTGCCTTGGCATGGGCTTTCTaGTTCAGCTTCTTGGTACTG | + |
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Preference number: 2 (lower is better) Translates to: TKRKETLECKVTEAPHFALAWAF*FSFLVL Trigger: CAGTACCAAGAAGCTGAAGCAGAAAGCCCATGCCAA...GGCAAAATGTGGTGCCTCTGTCACCTTACATTCTAGTGTTTCCTTTCTCTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112192.8 ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| 3UTR CCA 72 bp | TCAGCCTCTGGCAGAGGTAGGCAAGCATGGAACACTTaGCATGGGCTTTCTGCTTCAGCTTCTTGGTACTGC | + |
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Preference number: 3 (lower is better) Translates to: SASGRGRQAWNT*HGLSASASWYC Trigger: GCAGTACCAAGAAGCTGAAGCAGAAAGCCCATGCCAAGTGTTCCATGCTTGCCTACCTCTGCCAGAGGCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112192.8 ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| 3UTR CCA 72 bp | CGGTTATTCTCAGCCTCTGGCAGAGGTAGGCAAGCATaGAACACTTGGCATGGGCTTTCTGCTTCAGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: RLFSASGRGRQA*NTWHGLSASAS Trigger: AGAAGCTGAAGCAGAAAGCCCATGCCAAGTGTTCCATGCTTGCCTACCTCTGCCAGAGGCTGAGAATAACCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112192.8 ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| 3UTR-3UTR CAA 90 bp | GGACGGTTATTCTCAGCCTCTGGCAGAGGTAGGCAAGCATGGAACACTTGGCATTTCTGCTTCAGCTTCTaGGTACTGCAGTGTATTATG | + |
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Preference number: 3 (lower is better) Translates to: GRLFSASGRGRQAWNTWHFCFSF*VLQCIM Trigger: CATAATACACTGCAGTACCAAGAAGCTGAAGCAGAA...ATGCCAAGTGTTCCATGCTTGCCTACCTCTGCCAGAGGCTGAGAATAACCGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112192.8 ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| CDS-3UTR TCA 90 bp | GGACGGTTATTCTCAGCCTCTGGCAGAGGTAGGCAAGCATGGAACACTTGGCATTCATATGCCCTGCAGTaGCAAAGGCTGATACAAACC | + |
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Preference number: 4 (lower is better) Translates to: GRLFSASGRGRQAWNTWHSYALQ*QRLIQT Trigger: GGTTTGTATCAGCCTTTGTCACTGCAGGGCATATGA...ATGCCAAGTGTTCCATGCTTGCCTACCTCTGCCAGAGGCTGAGAATAACCGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| CDS-3UTR TCA 90 bp | CAAGAGGCCACATCTGCCACCTCCCACCCTGTATATAGCATAAAGGTAAAGTGCTCATATGCCCTGCAGTaGCAAAGGCTGATACAAACC | + |
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Preference number: 4 (lower is better) Translates to: QEATSATSHPVYSIKVKCSYALQ*QRLIQT Trigger: GGTTTGTATCAGCCTTTGTCACTGCAGGGCATATGA...GCACTTTACCTTTATGCTATATACAGGGTGGGAGGTGGCAGATGTGGCCTCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| CDS-3UTR TCA 90 bp | GCAAGCATGGAACACTTGGCATGGGCTTTCTGCTTCAGCTTCTTGGTACTGCAGTGCAGTGACAAAGGCTaGTACAAACCACTCATTAAA | + |
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Preference number: 4 (lower is better) Translates to: ASMEHLAWAFCFSFLVLQCSDKG*YKPLIK Trigger: TTTAATGAGTGGTTTGTATCAGCCTTTGTCACTGCA...CTGCAGTACCAAGAAGCTGAAGCAGAAAGCCCATGCCAAGTGTTCCATGCTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| CDS-3UTR GCA 90 bp | GCATGGAACACTTGGCATGGGCTTTCTGCTTCAGCTTCTTGGTACTGCAGTGTAATAATAAATCTCATATaGCCTGCAGTGACAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: AWNTWHGLSASASWYCSVIINLI*PAVTKA Trigger: AGCCTTTGTCACTGCAGGGCATATGAGATTTATTAT...TACACTGCAGTACCAAGAAGCTGAAGCAGAAAGCCCATGCCAAGTGTTCCATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| CDS-3UTR TCA 90 bp | ATGTTTTCCAGGCAATTTCGAATGATTTACAGAGCACACCTTCCTGATACCCACTGCAGTGACAAAGGCTaGTACAAACCACTCATTAAA | + |
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Preference number: 4 (lower is better) Translates to: MFSRQFRMIYRAHLPDTHCSDKG*YKPLIK Trigger: TTTAATGAGTGGTTTGTATCAGCCTTTGTCACTGCA...GTGGGTATCAGGAAGGTGTGCTCTGTAAATCATTCGAAATTGCCTGGAAAACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112194.2 ENSMUST00000116495.8 |
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| CDS-3UTR GCA 90 bp | ATGTACTACTGTAAAATCAAACCAACATTTCTAATACAAGAGGCCACATCTGCCATAATAAATCTCATATaGCCTGCAGTGACAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: MYYCKIKPTFLIQEATSAIINLI*PAVTKA Trigger: AGCCTTTGTCACTGCAGGGCATATGAGATTTATTAT...GGCAGATGTGGCCTCTTGTATTAGAAATGTTGGTTTGATTTTACAGTAGTACAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112194.2 ENSMUST00000116495.8 |
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