Pregenerated sensors for TRAPPC14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036948

Ensembl transcript IDs: ENSMUST00000048421.14, ENSMUST00000159123.8, ENSMUST00000159146.2, ENSMUST00000159649.8

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGCATCCTGGTCGCCGGCGCTGCCGCACCCTGGCAGCGCTCCTCCTaGGCTGACCGAGGCCAGGGCGGCCAGGGAGGTCGCCAGCTCGGT	+
Preference number: 5 (lower is better) Translates to: SILVAGAAAPWQRSS*ADRGQGGQGGRQLG Trigger: ACCGAGCTGGCGACCTCCCTGGCCGCCCTGGCCTCGGTCAGCGCAGGAGGAGCGCTGCCAGGGTGCGGCAGCGCCGGCGACCAGGATGCT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159123.8
CDS GCA 90 bp	CCAGGCTGGCCTGGTGTCTCTCCACCAGGTCTCGGACAGCAGGACTaGTGGGGCTGCTCTTTCGGGACAGGGGCCGGGCTTCAGGCGGAG	+
Preference number: 5 (lower is better) Translates to: PGWPGVSPPGLGQQD*WGCSFGTGAGLQAE Trigger: CTCCGCCTGAAGCCCGGCCCCTGTCCCGAAAGAGCAGCCCCAGCAGTCCTGCTGTCCGAGACCTGGTGGAGAGACACCAGGCCAGCCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CCA 90 bp	GGCTGGCCTGGTGTCTCTCCACCAGGTCTCGGACAGCAGGACTGCTaGGGCTGCTCTTTCGGGACAGGGGCCGGGCTTCAGGCGGAGGGT	+
Preference number: 5 (lower is better) Translates to: GWPGVSPPGLGQQDC*GCSFGTGAGLQAEG Trigger: ACCCTCCGCCTGAAGCCCGGCCCCTGTCCCGAAAGAGCAGCCCCAGCAGTCCTGCTGTCCGAGACCTGGTGGAGAGACACCAGGCCAGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CCA 90 bp	CTGGGGCTGCTCTTTCGGGACAGGGGCCGGGCTTCAGGCGGAGGGTaGGACACGCTGGCAGTGAACTGCAGCTTCAGTTTCATGTGCTGG	+
Preference number: 5 (lower is better) Translates to: LGLLFRDRGRASGGG*DTLAVNCSFSFMCW Trigger: CCAGCACATGAAACTGAAGCTGCAGTTCACTGCCAGCGTGTCCCACCCTCCGCCTGAAGCCCGGCCCCTGTCCCGAAAGAGCAGCCCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS TCA 90 bp	AGCGCGCTGCCCTTCCGGGAGAAGCCAAGATTATTGAGGGGTGTGTaGCAGACGATGGAGTCTAGGGCTGCCTGCATGGCCCGGCGCTCC	+
Preference number: 5 (lower is better) Translates to: SALPFREKPRLLRGV*QTMESRAACMARRS Trigger: GGAGCGCCGGGCCATGCAGGCAGCCCTAGACTCCATCGTCTGTCACACACCCCTCAATAATCTTGGCTTCTCCCGGAAGGGCAGCGCGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS TCA 90 bp	GACCTCATGAGGTGGCTACGGGAAGGCTGCTGGTGGGAGAAAGATTaGGAACGGCCCAGGCTGGCCTGGTGTCTCTCCACCAGGTCTCGG	+
Preference number: 5 (lower is better) Translates to: DLMRWLREGCWWEKD*ERPRLAWCLSTRSR Trigger: CCGAGACCTGGTGGAGAGACACCAGGCCAGCCTGGGCCGTTCTCAATCTTTCTCCCACCAGCAGCCTTCCCGTAGCCACCTCATGAGGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CCA 90 bp	TACGGGAAGGCTGCTGGTGGGAGAAAGATTGAGAACGGCCCAGGCTaGCCTGGTGTCTCTCCACCAGGTCTCGGACAGCAGGACTGCTGG	+
Preference number: 5 (lower is better) Translates to: YGKAAGGRKIENGPG*PGVSPPGLGQQDCW Trigger: CCAGCAGTCCTGCTGTCCGAGACCTGGTGGAGAGACACCAGGCCAGCCTGGGCCGTTCTCAATCTTTCTCCCACCAGCAGCCTTCCCGTA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048421.14 ENSMUST00000159146.2 ENSMUST00000159649.8
CDS TCA 90 bp	CTAGGCGGACACTGGGCAGGCGGTAGTGGGTGTAAATGCTCTGGGTaGAGGGCAGCTTCGGCGTGGACCACTGAACCACGGCAATCAAGG	+
Preference number: 5 (lower is better) Translates to: LGGHWAGGSGCKCSG*RAASAWTTEPRQSR Trigger: CCTTGATTGCCGTGGTTCAGTGGTCCACGCCGAAGCTGCCCTTCACCCAGAGCATTTACACCCACTACCGCCTGCCCAGTGTCCGCCTAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS TCA 90 bp	CCCCAGGAGATCGAGTCTGTAGCAAGCGCAGGTAGCCTTGATCTCTaGCTTCTGGTGCCTCGACCTCCCGCTTCCACACGGTCACTACAA	+
Preference number: 5 (lower is better) Translates to: PQEIESVASAGSLDL*LLVPRPPASTRSLQ Trigger: TTGTAGTGACCGTGTGGAAGCGGGAGGTCGAGGCACCAGAAGTCAGAGATCAAGGCTACCTGCGCTTGCTACAGACTCGATCTCCTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS GCA 90 bp	TTCAGCACCTTGAGCACGGTCAAGTGCTTTCCAGCCACAGTGAACTaGCGGCATTTCAGAACTGGAGGGGGCAGCAGCGTCAATAGGGTG	+
Preference number: 5 (lower is better) Translates to: FSTLSTVKCFPATVN*RHFRTGGGSSVNRV Trigger: CACCCTATTGACGCTGCTGCCCCCTCCAGTTCTGAAATGCCGGCAGTTCACTGTGGCTGGAAAGCACTTGACCGTGCTCAAGGTGCTGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS CCA 90 bp	AGGGGAAGTAGCCAGATGTTCCAGGAAGCCGACAGAAGGATCCCATaGAGACTTCCCCAGACTGGTGACAGACATTGTCCACCAGCAGCA	+
Preference number: 5 (lower is better) Translates to: RGSSQMFQEADRRIP*RLPQTGDRHCPPAA Trigger: TGCTGCTGGTGGACAATGTCTGTCACCAGTCTGGGGAAGTCTCCATGGGATCCTTCTGTCGGCTTCCTGGAACATCTGGCTACTTCCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CCA 90 bp	CCCTCTCAGCTGGAACAGGAAGTTGTGTTCCTCCAGGGCACTAAGTaGACAGGGGAAGTAGCCAGATGTTCCAGGAAGCCGACAGAAGGA	+
Preference number: 5 (lower is better) Translates to: PSQLEQEVVFLQGTK*TGEVARCSRKPTEG Trigger: TCCTTCTGTCGGCTTCCTGGAACATCTGGCTACTTCCCCTGTCCACTTAGTGCCCTGGAGGAACACAACTTCCTGTTCCAGCTGAGAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS TCA 90 bp	CACTACAATCTTGGCCTTGGGTGTCCCTGGGGGCAGTCTATCCAGTaGAACGGTGAGTGGGAAGATGACTTCATCTGTGGACACAATCGG	+
Preference number: 5 (lower is better) Translates to: HYNLGLGCPWGQSIQ*NGEWEDDFICGHNR Trigger: CCGATTGTGTCCACAGATGAAGTCATCTTCCCACTCACCGTTTCACTGGATAGACTGCCCCCAGGGACACCCAAGGCCAAGATTGTAGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS GCA 90 bp	ATCTCTTCCTGGGAAGAGCTATTCAGCACCTTGAGCACGGTCAAGTaGTTTCCAGCCACAGTGAACTGCCGGCATTTCAGAACTGGAGGG	+
Preference number: 5 (lower is better) Translates to: ISSWEELFSTLSTVK*FPATVNCRHFRTGG Trigger: CCCTCCAGTTCTGAAATGCCGGCAGTTCACTGTGGCTGGAAAGCACTTGACCGTGCTCAAGGTGCTGAATAGCTCTTCCCAGGAAGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS GCA 72 bp	GTCGCCGGCGCTGCCGCACCCTGGCAGCGCTCCTCCTaGGCTGACCGAGGCCAGGGCGGCCAGGGAGGTCGC	+
Preference number: 6 (lower is better) Translates to: VAGAAAPWQRSS*ADRGQGGQGGR Trigger: GCGACCTCCCTGGCCGCCCTGGCCTCGGTCAGCGCAGGAGGAGCGCTGCCAGGGTGCGGCAGCGCCGGCGAC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159123.8
CDS CCA 72 bp	GGGGTCAGCATCCTGGTCGCCGGCGCTGCCGCACCCTaGCAGCGCTCCTCCTGCGCTGACCGAGGCCAGGGC	+
Preference number: 6 (lower is better) Translates to: GVSILVAGAAAP*QRSSCADRGQG Trigger: GCCCTGGCCTCGGTCAGCGCAGGAGGAGCGCTGCCAGGGTGCGGCAGCGCCGGCGACCAGGATGCTGACCCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159123.8
CDS CCA 72 bp	GGCAGCGTGGTCGCGCCCCCTGAGGTAGCAGGGCCCTaGCCGTGGGTGAGAAGGGGGCTGCAACCTCGAAAC	+
Preference number: 6 (lower is better) Translates to: GSVVAPPEVAGP*PWVRRGLQPRN Trigger: GTTTCGAGGTTGCAGCCCCCTTCTCACCCACGGCCAGGGCCCTGCTACCTCAGGGGGCGCGACCACGCTGCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159123.8
CDS TCA 72 bp	AATCGGTTCTTCCACAGGCAGCGTGGTCGCGCCCCCTaGGGTAGCAGGGCCCTGGCCGTGGGTGAGAAGGGG	+
Preference number: 6 (lower is better) Translates to: NRFFHRQRGRAP*GSRALAVGEKG Trigger: CCCCTTCTCACCCACGGCCAGGGCCCTGCTACCTCAGGGGGCGCGACCACGCTGCCTGTGGAAGAACCGATT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159123.8
CDS GCA 72 bp	TCTCCACCAGGTCTCGGACAGCAGGACTGCTGGGGCTaGTCTTTCGGGACAGGGGCCGGGCTTCAGGCGGAG	+
Preference number: 6 (lower is better) Translates to: SPPGLGQQDCWG*SFGTGAGLQAE Trigger: CTCCGCCTGAAGCCCGGCCCCTGTCCCGAAAGAGCAGCCCCAGCAGTCCTGCTGTCCGAGACCTGGTGGAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CCA 72 bp	GTGGTCGCGCCCCCTGAGGTAGCAGGGCCCTGGCCGTaGGTGAGAAGGGGGCTGCAACCTCGAAACAAACCC	+
Preference number: 6 (lower is better) Translates to: VVAPPEVAGPWP*VRRGLQPRNKP Trigger: GGGTTTGTTTCGAGGTTGCAGCCCCCTTCTCACCCACGGCCAGGGCCCTGCTACCTCAGGGGGCGCGACCAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159123.8
CDS GCA 72 bp	CCTGGTGTCTCTCCACCAGGTCTCGGACAGCAGGACTaGTGGGGCTGCTCTTTCGGGACAGGGGCCGGGCTT	+
Preference number: 6 (lower is better) Translates to: PGVSPPGLGQQD*WGCSFGTGAGL Trigger: AAGCCCGGCCCCTGTCCCGAAAGAGCAGCCCCAGCAGTCCTGCTGTCCGAGACCTGGTGGAGAGACACCAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CCA 72 bp	CTCTTTCGGGACAGGGGCCGGGCTTCAGGCGGAGGGTaGGACACGCTGGCAGTGAACTGCAGCTTCAGTTTC	+
Preference number: 6 (lower is better) Translates to: LFRDRGRASGGG*DTLAVNCSFSF Trigger: GAAACTGAAGCTGCAGTTCACTGCCAGCGTGTCCCACCCTCCGCCTGAAGCCCGGCCCCTGTCCCGAAAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS TCA 72 bp	CACTGGGCAGGCGGTAGTGGGTGTAAATGCTCTGGGTaGAGGGCAGCTTCGGCGTGGACCACTGAACCACGG	+
Preference number: 6 (lower is better) Translates to: HWAGGSGCKCSG*RAASAWTTEPR Trigger: CCGTGGTTCAGTGGTCCACGCCGAAGCTGCCCTTCACCCAGAGCATTTACACCCACTACCGCCTGCCCAGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS TCA 72 bp	GCCGGGCTTCAGGCGGAGGGTGGGACACGCTGGCAGTaGACTGCAGCTTCAGTTTCATGTGCTGGCTCAGCT	+
Preference number: 6 (lower is better) Translates to: AGLQAEGGTRWQ*TAASVSCAGSA Trigger: AGCTGAGCCAGCACATGAAACTGAAGCTGCAGTTCACTGCCAGCGTGTCCCACCCTCCGCCTGAAGCCCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS TCA 72 bp	AGGTGGCTACGGGAAGGCTGCTGGTGGGAGAAAGATTaGGAACGGCCCAGGCTGGCCTGGTGTCTCTCCACC	+
Preference number: 6 (lower is better) Translates to: RWLREGCWWEKD*ERPRLAWCLST Trigger: GGTGGAGAGACACCAGGCCAGCCTGGGCCGTTCTCAATCTTTCTCCCACCAGCAGCCTTCCCGTAGCCACCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CCA 72 bp	GTGTGTGACAGACGATGGAGTCTAGGGCTGCCTGCATaGCCCGGCGCTCCTCCTCACACAGCTGCTTTCCAG	+
Preference number: 6 (lower is better) Translates to: VCDRRWSLGLPA*PGAPPHTAAFQ Trigger: CTGGAAAGCAGCTGTGTGAGGAGGAGCGCCGGGCCATGCAGGCAGCCCTAGACTCCATCGTCTGTCACACAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CCA 72 bp	GCTGCTGGTGGGAGAAAGATTGAGAACGGCCCAGGCTaGCCTGGTGTCTCTCCACCAGGTCTCGGACAGCAG	+
Preference number: 6 (lower is better) Translates to: AAGGRKIENGPG*PGVSPPGLGQQ Trigger: CTGCTGTCCGAGACCTGGTGGAGAGACACCAGGCCAGCCTGGGCCGTTCTCAATCTTTCTCCCACCAGCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048421.14 ENSMUST00000159146.2 ENSMUST00000159649.8
CDS TCA 72 bp	ATGCTCTGGGTGAAGGGCAGCTTCGGCGTGGACCACTaGACCACGGCAATCAAGGGGACTTCAAGGCCCTCC	+
Preference number: 6 (lower is better) Translates to: MLWVKGSFGVDH*TTAIKGTSRPS Trigger: GGAGGGCCTTGAAGTCCCCTTGATTGCCGTGGTTCAGTGGTCCACGCCGAAGCTGCCCTTCACCCAGAGCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CAA 72 bp	GGGGGCAGCAGCGTCAATAGGGTGCTCACTTGGGCCTaGAAGGCGCTCTGTTCTCCACGGAAAGTCTCCCCA	+
Preference number: 6 (lower is better) Translates to: GGSSVNRVLTWA*KALCSPRKVSP Trigger: TGGGGAGACTTTCCGTGGAGAACAGAGCGCCTTCAAGGCCCAAGTGAGCACCCTATTGACGCTGCTGCCCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS CCA 72 bp	ACTGGAGGGGGCAGCAGCGTCAATAGGGTGCTCACTTaGGCCTTGAAGGCGCTCTGTTCTCCACGGAAAGTC	+
Preference number: 6 (lower is better) Translates to: TGGGSSVNRVLT*ALKALCSPRKV Trigger: GACTTTCCGTGGAGAACAGAGCGCCTTCAAGGCCCAAGTGAGCACCCTATTGACGCTGCTGCCCCCTCCAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS TCA 72 bp	ATCGAGTCTGTAGCAAGCGCAGGTAGCCTTGATCTCTaGCTTCTGGTGCCTCGACCTCCCGCTTCCACACGG	+
Preference number: 6 (lower is better) Translates to: IESVASAGSLDL*LLVPRPPASTR Trigger: CCGTGTGGAAGCGGGAGGTCGAGGCACCAGAAGTCAGAGATCAAGGCTACCTGCGCTTGCTACAGACTCGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS TCA 72 bp	CCCTTCCGGGAGAAGCCAAGATTATTGAGGGGTGTGTaGCAGACGATGGAGTCTAGGGCTGCCTGCATGGCC	+
Preference number: 6 (lower is better) Translates to: PFREKPRLLRGV*QTMESRAACMA Trigger: GGCCATGCAGGCAGCCCTAGACTCCATCGTCTGTCACACACCCCTCAATAATCTTGGCTTCTCCCGGAAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS GCA 72 bp	TTGAGCACGGTCAAGTGCTTTCCAGCCACAGTGAACTaGCGGCATTTCAGAACTGGAGGGGGCAGCAGCGTC	+
Preference number: 6 (lower is better) Translates to: LSTVKCFPATVN*RHFRTGGGSSV Trigger: GACGCTGCTGCCCCCTCCAGTTCTGAAATGCCGGCAGTTCACTGTGGCTGGAAAGCACTTGACCGTGCTCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS GCA 72 bp	GCTTCAGGCGGAGGGTGGGACACGCTGGCAGTGAACTaGAGCTTCAGTTTCATGTGCTGGCTCAGCTCAAAG	+
Preference number: 6 (lower is better) Translates to: ASGGGWDTLAVN*SFSFMCWLSSK Trigger: CTTTGAGCTGAGCCAGCACATGAAACTGAAGCTGCAGTTCACTGCCAGCGTGTCCCACCCTCCGCCTGAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS TCA 72 bp	CTTGGCCTTGGGTGTCCCTGGGGGCAGTCTATCCAGTaGAACGGTGAGTGGGAAGATGACTTCATCTGTGGA	+
Preference number: 6 (lower is better) Translates to: LGLGCPWGQSIQ*NGEWEDDFICG Trigger: TCCACAGATGAAGTCATCTTCCCACTCACCGTTTCACTGGATAGACTGCCCCCAGGGACACCCAAGGCCAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159123.8
CDS CCA 72 bp	CTGGAACAGGAAGTTGTGTTCCTCCAGGGCACTAAGTaGACAGGGGAAGTAGCCAGATGTTCCAGGAAGCCG	+
Preference number: 6 (lower is better) Translates to: LEQEVVFLQGTK*TGEVARCSRKP Trigger: CGGCTTCCTGGAACATCTGGCTACTTCCCCTGTCCACTTAGTGCCCTGGAGGAACACAACTTCCTGTTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS CAA 90 bp	CTGTGCATGTTCCGGGGTCCACACAAGCCTCACAGCAAGGAAGTCTaGGAGGTTGTTGAGCAGCGTGTAGGTGACAGTGAAACGCTCGTA	+
Preference number: 6 (lower is better) Translates to: LCMFRGPHKPHSKEV*EVVEQRVGDSETLV Trigger: TACGAGCGTTTCACTGTCACCTACACGCTGCTCAACAACCTCCAAGACTTCCTTGCTGTGAGGCTTGTGTGGACCCCGGAACATGCACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8
CDS GCA 72 bp	TGGGAAGAGCTATTCAGCACCTTGAGCACGGTCAAGTaGTTTCCAGCCACAGTGAACTGCCGGCATTTCAGA	+
Preference number: 6 (lower is better) Translates to: WEELFSTLSTVK*FPATVNCRHFR Trigger: TCTGAAATGCCGGCAGTTCACTGTGGCTGGAAAGCACTTGACCGTGCTCAAGGTGCTGAATAGCTCTTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048421.14
CDS CAA 72 bp	TTGACGGGCTCCACCACCAGGACTTTACACTCACGCTaGGCAATCTTATCAAGAGAAAGCACAGCCTTGTCG	+
Preference number: 6 (lower is better) Translates to: LTGSTTRTLHSR*AILSRESTALS Trigger: CGACAAGGCTGTGCTTTCTCTTGATAAGATTGCCAAGCGTGAGTGTAAAGTCCTGGTGGTGGAGCCCGTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048421.14 ENSMUST00000159649.8

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu