RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRAPPC12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020628

Ensembl transcript IDs: ENSMUST00000020954.15, ENSMUST00000168129.10, ENSMUST00000170994.3

Found 315 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGTGGGCAGGCCGTGGGAAGAAACACTGAAGGTGAAGCGTGGGGCTaGAAGAGAGGGCTCCTGACGCGACACTTACCTATGCCAAGGAGG +
Preference number: 1 (lower is better)
Translates to: SGQAVGRNTEGEAWG*KRGLLTRHLPMPRR
Trigger: CCTCCTTGGCATAGGTAAGTGTCGCGTCAGGAGCCCTCTCTTCCAGCCCCACGCTTCACCTTCAGTGTTTCTTCCCACGGCCTGCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR GCA 90 bp GAATTATTAAATATCCCCACTGCTCCAGCATTGAGTGGTCACTGGTaGAGGCCACTAGTAGCGTTGCTCAGCACAGCAGGCCAGGCCTGG +
Preference number: 1 (lower is better)
Translates to: ELLNIPTAPALSGHW*RPLVALLSTAGQAW
Trigger: CCAGGCCTGGCCTGCTGTGCTGAGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGGATATTTAATAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR TCA 90 bp CATCCCACAGCCGTGCATCCTGCCTTTAAAATGAGTGTTTTCACATaGATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTA +
Preference number: 1 (lower is better)
Translates to: HPTAVHPAFKMSVFT*IRKAGNGRPFPGPL
Trigger: TAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTCATGTGAAAACACTCATTTTAAAGGCAGGATGCACGGCTGTGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR TCA 90 bp ATAGTGAGAACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTaGCCAAAGAACAAGTTAGCTTCCATGAACAAACCAAGGGAACCC +
Preference number: 1 (lower is better)
Translates to: IVRTGNIIYQTSIQK*PKNKLASMNKPREP
Trigger: GGGTTCCCTTGGTTTGTTCATGGAAGCTAACTTGTTCTTTGGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGTTCTCACTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR TCA 90 bp GCAATACTTTTGTTTGGGATATGGAGGGAGGAAGACAATGAACTGTaGTTGTTTAGGCCTATAGTGAGAACAGGCAATATTATTTACCAA +
Preference number: 1 (lower is better)
Translates to: AILLFGIWREEDNEL*LFRPIVRTGNIIYQ
Trigger: TTGGTAAATAATATTGCCTGTTCTCACTATAGGCCTAAACAATCACAGTTCATTGTCTTCCTCCCTCCATATCCCAAACAAAAGTATTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR CCA 90 bp GGAGAGAGGTACTTGGAACTGAGTGGGCAGGCCGTGGGAAGAAACACTGAAGGTCACACCTCTCTGGGCTaGGGCCCTGGCCTGCAGGAG +
Preference number: 2 (lower is better)
Translates to: GERYLELSGQAVGRNTEGHTSLG*GPGLQE
Trigger: CTCCTGCAGGCCAGGGCCCCAGCCCAGAGAGGTGTG...ACCTTCAGTGTTTCTTCCCACGGCCTGCCCACTCAGTTCCAAGTACCTCTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR CAA 90 bp ACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTaGCTCAGCACAGCAGGCCAGGCCTGGTCAGGATGTACACTTCGG +
Preference number: 2 (lower is better)
Translates to: TAPALSGHWCRPLVA*LSTAGQAWSGCTLR
Trigger: CCGAAGTGTACATCCTGACCAGGCCTGGCCTGCTGTGCTGAGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR CAA 90 bp GAGTTTTACAGTTATCTGAGTAGGTGGCTGGGCAGGTGTCCTAACTaGCTGCACACCTCTCTGGGCTGGGGCCCTGGCCTGCAGGAGCTG +
Preference number: 2 (lower is better)
Translates to: EFYSYLSRWLGRCPN*LHTSLGWGPGLQEL
Trigger: CAGCTCCTGCAGGCCAGGGCCCCAGCCCAGAGAGGTGTGCAGCAAGTTAGGACACCTGCCCAGCCACCTACTCAGATAACTGTAAAACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR-3UTR TCA 90 bp ATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAAGGCATGCTCATCAAATGCTTTTACTaGCCCATCTGCTCAAGTGTC +
Preference number: 2 (lower is better)
Translates to: MVGRSAGLRVAQPAEGMLIKCFY*PICSSV
Trigger: GACACTTGAGCAGATGGGTCAGTAAAAGCATTTGAT...GAGCATGCCTTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR GCA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTTAAGCAATTCTCTTaGCTTCAGGCACAGGAGCGC +
Preference number: 2 (lower is better)
Translates to: EEPAVLLMELGWNPCPQIVKQFS*LQAQER
Trigger: GCGCTCCTGTGCCTGAAGGCAAGAGAATTGCTTAAC...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR TCA 90 bp CCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTACACCTGCAGGAGCTGTCATaGGTGAGGGCTTGCTGTAGA +
Preference number: 2 (lower is better)
Translates to: PCLTLYTAPTTCLPQYLHLQELS*VRACCR
Trigger: TCTACAGCAAGCCCTCACTCATGACAGCTCCTGCAG...GTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR CAA 90 bp AGTGACTTTGGCACCCTGCTTGACTCTGTATACAGCCCCTACCACTaGCTTGCCACAATATTTACACAGGCCATGACCCCTGCTTTGAGT +
Preference number: 2 (lower is better)
Translates to: SDFGTLLDSVYSPYH*LATIFTQAMTPALS
Trigger: ACTCAAAGCAGGGGTCATGGCCTGTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGTGCCAAAGTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR-3UTR TCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAATGCTGTGCCAGCCCATaGTGCTCCTTGCCCAGCTGT +
Preference number: 2 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKCCASP*CSLPSC
Trigger: ACAGCTGGGCAAGGAGCATCATGGGCTGGCACAGCA...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR TCA 90 bp CTACCTGGGGGCCTTCTGGAAGGTAGGCTTCCCACAGGGAAGAGGCTTCTCAGAGTGCTCTTGGACACTTaGAGAATTATTAAATATCCC +
Preference number: 2 (lower is better)
Translates to: LPGGLLEGRLPTGKRLLRVLLDT*RIIKYP
Trigger: GGGATATTTAATAATTCTTCAAGTGTCCAAGAGCAC...TCTGAGAAGCCTCTTCCCTGTGGGAAGCCTACCTTCCAGAAGGCCCCCAGGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR-3UTR TCA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATATGCTGTGCCAGCCCATaGTGCTCCTTGCCCAGCTGT +
Preference number: 2 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRICCASP*CSLPSC
Trigger: ACAGCTGGGCAAGGAGCATCATGGGCTGGCACAGCA...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CAA 90 bp CACAAACACTTTTCACTTTATTACAGACATGAAGAGCCAGCAGTTTaGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGG +
Preference number: 2 (lower is better)
Translates to: HKHFSLYYRHEEPAV*LMELGWNPCPQIVR
Trigger: CCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAAGTGAAAAGTGTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR GCA 90 bp GGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATCTGCTCAAGTGTCTaGAGGTACAGAGACCTGGAG +
Preference number: 2 (lower is better)
Translates to: GNGRPFPGPLHFAKWKKRICSSV*RYRDLE
Trigger: CTCCAGGTCTCTGTACCTGCAGACACTTGAGCAGAT...GCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR GCA 90 bp TTTATTACAGACATGAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCAACAGGCAGTATTGTaGAACTGCATGGTAGGCAGG +
Preference number: 2 (lower is better)
Translates to: FITDMKSQQFCLWSWGGTQQAVL*NCMVGR
Trigger: CCTGCCTACCATGCAGTTGCACAATACTGCCTGTTG...GGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR GCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAACAACAGGCAGTATTGTaGAACTGCATGGTAGGCAGG +
Preference number: 2 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKQQAVL*NCMVGR
Trigger: CCTGCCTACCATGCAGTTGCACAATACTGCCTGTTG...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR TCA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAATATGTTCCCTGTTTCTaGATGCCATGCATATGGCTC +
Preference number: 2 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQYVPCF*MPCIWL
Trigger: GAGCCATATGCATGGCATTCAGAAACAGGGAACATA...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR CCA 90 bp GGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCAGCAATACTTTTGTTTaGGATATGGAGGGAGGAAGA +
Preference number: 2 (lower is better)
Translates to: GNGRPFPGPLHFAKWKKRSNTFV*DMEGGR
Trigger: TCTTCCTCCCTCCATATCCCAAACAAAAGTATTGCT...GCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR CCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCAATACTTTTGTTTaGGATATGGAGGGAGGAAGA +
Preference number: 2 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKSNTFV*DMEGGR
Trigger: TCTTCCTCCCTCCATATCCCAAACAAAAGTATTGCT...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR TCA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATAACGAGTATTCAGAAGTaGCCAAAGAACAAGTTAGCT +
Preference number: 2 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRITSIQK*PKNKLA
Trigger: AGCTAACTTGTTCTTTGGTCACTTCTGAATACTCGT...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CCA 72 bp GGCTGGGCAGGTGTCCTAACTTGCTGCACACCTCTCTaGGCTGGGGCCCTGGCCTGCAGGAGCTGTCATGAG +
Preference number: 3 (lower is better)
Translates to: GWAGVLTCCTPL*AGALACRSCHE
Trigger: CTCATGACAGCTCCTGCAGGCCAGGGCCCCAGCCCAGAGAGGTGTGCAGCAAGTTAGGACACCTGCCCAGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR TCA 72 bp GGGTGGAACCCATGCCCTCAGATCGTGAGGCACAAATaGTGCTCCGCTGCATCCCACAGCCGTGCATCCTGC +
Preference number: 3 (lower is better)
Translates to: GWNPCPQIVRHK*CSAASHSRASC
Trigger: GCAGGATGCACGGCTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGGTTCCACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR TCA 72 bp CTGAAGGTGAAGCGTGGGGCTGGAAGAGAGGGCTCCTaGCGCGACACTTACCTATGCCAAGGAGGCTCCCTA +
Preference number: 3 (lower is better)
Translates to: LKVKRGAGREGS*RDTYLCQGGSL
Trigger: TAGGGAGCCTCCTTGGCATAGGTAAGTGTCGCGTCAGGAGCCCTCTCTTCCAGCCCCACGCTTCACCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR GCA 72 bp ATGGCTCACCTTCACCAACAGGCAGTATTGTGCAACTaGATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCC +
Preference number: 3 (lower is better)
Translates to: MAHLHQQAVLCN*MVGRSAGLRVA
Trigger: GGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CCA 72 bp TCCCTAAAGCAGAGGGCTCTTCTGGACCCCAAGCCCTaGGCACAGACTAGATTGGATTGGAATACCAGCCTG +
Preference number: 3 (lower is better)
Translates to: SLKQRALLDPKP*AQTRLDWNTSL
Trigger: CAGGCTGGTATTCCAATCCAATCTAGTCTGTGCCCAGGGCTTGGGGTCCAGAAGAGCCCTCTGCTTTAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR CCA 72 bp GTCTTACGAGCTCACCGCCGTGATCAAGTTCAGTCATaGAGAGAGGTACTTGGAACTGAGTGGGCAGGCCGT +
Preference number: 3 (lower is better)
Translates to: VLRAHRRDQVQS*REVLGTEWAGR
Trigger: ACGGCCTGCCCACTCAGTTCCAAGTACCTCTCTCCATGACTGAACTTGATCACGGCGGTGAGCTCGTAAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR GCA 72 bp ATGCATATGGCTCACCTTCACCAACAGGCAGTATTGTaGAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGG +
Preference number: 3 (lower is better)
Translates to: MHMAHLHQQAVL*NCMVGRSAGLR
Trigger: CCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCATATGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CCA 72 bp GCACGGGAAGGCTATGTGTCCAAGGGGAACGATGTCTaGAGTGACTTTGGCACCCTGCTTGACTCTGTATAC +
Preference number: 3 (lower is better)
Translates to: AREGYVSKGNDV*SDFGTLLDSVY
Trigger: GTATACAGAGTCAAGCAGGGTGCCAAAGTCACTCCAGACATCGTTCCCCTTGGACACATAGCCTTCCCGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR CCA 72 bp TTAAATATCCCCACTGCTCCAGCATTGAGTGGTCACTaGTGCAGGCCACTAGTAGCGTTGCTCAGCACAGCA +
Preference number: 3 (lower is better)
Translates to: LNIPTAPALSGH*CRPLVALLSTA
Trigger: TGCTGTGCTGAGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGGATATTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR CCA 72 bp CAGGATGTACACTTCGGTGTTTCCACCCAGTTTGTGTaGCTCCAGATGTCCTCCTGTCTGTGTGTGCTTTTC +
Preference number: 3 (lower is better)
Translates to: QDVHFGVSTQFV*LQMSSCLCVLF
Trigger: GAAAAGCACACACAGACAGGAGGACATCTGGAGCCACACAAACTGGGTGGAAACACCGAAGTGTACATCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR CCA 72 bp GATTGGATTGGAATACCAGCCTGCACTCCTAAAATGTaGGTAATTCTCACTACACACCCACAGCACGGGAAG +
Preference number: 3 (lower is better)
Translates to: DWIGIPACTPKM*VILTTHPQHGK
Trigger: CTTCCCGTGCTGTGGGTGTGTAGTGAGAATTACCCACATTTTAGGAGTGCAGGCTGGTATTCCAATCCAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR-3UTR CAA 90 bp TTCCCACAGGGAAGAGGCTTCTCAGAGTGCTCTTGGACACTTGAAGAATTATTAGTGTTTCCACCCAGTTaGTGTGGCTCCAGATGTCCT +
Preference number: 3 (lower is better)
Translates to: FPQGRGFSECSWTLEELLVFPPS*CGSRCP
Trigger: AGGACATCTGGAGCCACACAAACTGGGTGGAAACAC...TAATAATTCTTCAAGTGTCCAAGAGCACTCTGAGAAGCCTCTTCCCTGTGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR-3UTR CAA 90 bp GAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATCACCAACAGGCAGTATaGTGCAACTGCATGGTAGGC +
Preference number: 3 (lower is better)
Translates to: ERKTISRSFTFCKVEKAHHQQAV*CNCMVG
Trigger: GCCTACCATGCAGTTGCACAATACTGCCTGTTGGTG...ATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR GCA 72 bp TTTCACTTTATTACAGACATGAAGAGCCAGCAGTTTTaGTTATGGAGCTGGGGTGGAACCCATGCCCTCAGA +
Preference number: 3 (lower is better)
Translates to: FHFITDMKSQQF*LWSWGGTHALR
Trigger: TCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAAGTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR CAA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACACCAACAGGCAGTATaGTGCAACTGCATGGTAGGC +
Preference number: 3 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIHQQAV*CNCMVG
Trigger: GCCTACCATGCAGTTGCACAATACTGCCTGTTGGTG...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR GCA 72 bp AAGGTAGGCTTCCCACAGGGAAGAGGCTTCTCAGAGTaGTCTTGGACACTTGAAGAATTATTAAATATCCCC +
Preference number: 3 (lower is better)
Translates to: KVGFPQGRGFSE*SWTLEELLNIP
Trigger: GGGGATATTTAATAATTCTTCAAGTGTCCAAGAGCACTCTGAGAAGCCTCTTCCCTGTGGGAAGCCTACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR GCA 72 bp CTTGCTTGCCACAATATTTACACAGGCCATGACCCCTaGTTTGAGTTTTACAGTTATCTGAGTAGGTGGCTG +
Preference number: 3 (lower is better)
Translates to: LACHNIYTGHDP*FEFYSYLSRWL
Trigger: CAGCCACCTACTCAGATAACTGTAAAACTCAAAGCAGGGGTCATGGCCTGTGTAAATATTGTGGCAAGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR-3UTR CAA 90 bp TTTATTACAGACATGAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCAGGTCCTTTACATTTaGCAAAGTGGAAAAAGCGCA +
Preference number: 3 (lower is better)
Translates to: FITDMKSQQFCLWSWGGTQVLYI*QSGKSA
Trigger: TGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTG...GGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR TCA 72 bp GCCGTGCATCCTGCCTTTAAAATGAGTGTTTTCACATaGATTAGGAAAGCTGGGAACGGAAGACCATTTCCA +
Preference number: 3 (lower is better)
Translates to: AVHPAFKMSVFT*IRKAGNGRPFP
Trigger: TGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTCATGTGAAAACACTCATTTTAAAGGCAGGATGCACGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR TCA 72 bp ACAGGGAAGAGGCTTCTCAGAGTGCTCTTGGACACTTaGAGAATTATTAAATATCCCCACTGCTCCAGCATT +
Preference number: 3 (lower is better)
Translates to: TGKRLLRVLLDT*RIIKYPHCSSI
Trigger: AATGCTGGAGCAGTGGGGATATTTAATAATTCTTCAAGTGTCCAAGAGCACTCTGAGAAGCCTCTTCCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
3UTR-3UTR CAA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAAGCAATACTTTTGTTaGGGATATGGAGGGAGGAAG +
Preference number: 3 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKKQYFC*GYGGRK
Trigger: CTTCCTCCCTCCATATCCCAAACAAAAGTATTGCTT...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
42% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR CAA 90 bp GGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAAAGCAATACTTTTGTTaGGGATATGGAGGGAGGAAG +
Preference number: 3 (lower is better)
Translates to: GRPFPGPLHFAKWKKRIQKQYFC*GYGGRK
Trigger: CTTCCTCCCTCCATATCCCAAACAAAAGTATTGCTT...TTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR-3UTR CAA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATAATCAAAGCAATACTTTaGTTTGGGATATGGAGGGAG +
Preference number: 3 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIIKAIL*FGIWRE
Trigger: CTCCCTCCATATCCCAAACAAAAGTATTGCTTTGAT...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR TCA 72 bp TTGTTTGGGATATGGAGGGAGGAAGACAATGAACTGTaGTTGTTTAGGCCTATAGTGAGAACAGGCAATATT +
Preference number: 3 (lower is better)
Translates to: LFGIWREEDNEL*LFRPIVRTGNI
Trigger: AATATTGCCTGTTCTCACTATAGGCCTAAACAATCACAGTTCATTGTCTTCCTCCCTCCATATCCCAAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR TCA 72 bp ACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTaGCCAAAGAACAAGTTAGCTTCCATGAACAAACCA +
Preference number: 3 (lower is better)
Translates to: TGNIIYQTSIQK*PKNKLASMNKP
Trigger: TGGTTTGTTCATGGAAGCTAACTTGTTCTTTGGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GGTCACTGGTGCAGGCCACTAGTAGCGTTGCTCAGCACAGCAGGCCAGGCCTGGAGAAACAGGTGTGGCTaGGAGGGAGTGGCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: GHWCRPLVALLSTAGQAWRNRCG*EGVAVA
Trigger: GGCTACCGCCACTCCCTCCCAGCCACACCTGTTTCT...CCAGGCCTGGCCTGCTGTGCTGAGCAACGCTACTAGTGGCCTGCACCAGTGACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR GCA 90 bp AGTATTGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCTGCCTGGGGTCCTGCTaGACCATGGCCTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: SIVQLHGRQVSGSEGSPACLGSC*TMASSC
Trigger: GCAGCTGGAGGCCATGGTGCAGCAGGACCCCAGGCA...GGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp CCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGCCGAGGACCTGCCTGGGCTaGAGGAGATGCCTCACTTGG +
Preference number: 4 (lower is better)
Translates to: PMPSDREAQMMLRCIPQPRTCLG*RRCLTW
Trigger: CCAAGTGAGGCATCTCCTTCAGCCCAGGCAGGTCCT...CGGCTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAACCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGTGCCTGGGGTCCTGCTaGACCATGGCCTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: EPMPSDREAQMMLRCIPQCLGSC*TMASSC
Trigger: GCAGCTGGAGGCCATGGTGCAGCAGGACCCCAGGCA...CTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp ATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAAGGCATGCTCGCAAGGGCTCGTCTTTaGAGGAGGACTGATTGGAGG +
Preference number: 4 (lower is better)
Translates to: MVGRSAGLRVAQPAEGMLARARL*RRTDWR
Trigger: CCTCCAATCAGTCCTCCTCCAAAGACGAGCCCTTGC...GAGCATGCCTTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CAA 72 bp AGTTATCTGAGTAGGTGGCTGGGCAGGTGTCCTAACTaGCTGCACACCTCTCTGGGCTGGGGCCCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: SYLSRWLGRCPN*LHTSLGWGPGL
Trigger: CAGGCCAGGGCCCCAGCCCAGAGAGGTGTGCAGCAAGTTAGGACACCTGCCCAGCCACCTACTCAGATAACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp CTACCTGGGGGCCTTCTGGAAGGTAGGCTTCCCACAGGGAAGAGGCTTCTCAGAAGGACCTGCCTGGGCTaGAGGAGATGCCTCACTTGG +
Preference number: 4 (lower is better)
Translates to: LPGGLLEGRLPTGKRLLRRTCLG*RRCLTW
Trigger: CCAAGTGAGGCATCTCCTTCAGCCCAGGCAGGTCCT...TCTGAGAAGCCTCTTCCCTGTGGGAAGCCTACCTTCCAGAAGGCCCCCAGGTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp AGTATTGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCGATCAGTGGCACCTCTaGGGGGCTCCCCAACATCCT +
Preference number: 4 (lower is better)
Translates to: SIVQLHGRQVSGSEGSPADQWHL*GAPQHP
Trigger: AGGATGTTGGGGAGCCCCCCAGAGGTGCCACTGATC...GGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CAA 72 bp GCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTaGCTCAGCACAGCAGGCCAGGCCTGGTCAGGATGT +
Preference number: 4 (lower is better)
Translates to: ALSGHWCRPLVA*LSTAGQAWSGC
Trigger: ACATCCTGACCAGGCCTGGCCTGCTGTGCTGAGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR GCA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGGACCATGGAGCCCCTaGGTCCTGGGTACACGTGTG +
Preference number: 4 (lower is better)
Translates to: EEPAVLLMELGWNPCPQIGPWSP*VLGTRV
Trigger: CACACGTGTACCCAGGACGCAGGGGCTCCATGGTCC...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp CCCCACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTGCTCGGAGGGGATGCATGTaGTTGCTGCAGACGGTCTTG +
Preference number: 4 (lower is better)
Translates to: PHCSSIEWSLVQATSSVARRGCM*LLQTVL
Trigger: CAAGACCGTCTGCAGCAAGCACATGCATCCCCTCCG...AGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp ATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAAGGCATGCTCTGGAGGAGGACTGATTaGAGGACACTTCTGAGGTCT +
Preference number: 4 (lower is better)
Translates to: MVGRSAGLRVAQPAEGMLWRRTD*RTLLRS
Trigger: AGACCTCAGAAGTGTCCTCCAATCAGTCCTCCTCCA...GAGCATGCCTTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGCCGGCAGACAGTTTGCCATaGAGTACAGCACACGGCCCA +
Preference number: 4 (lower is better)
Translates to: PMPSDREAQMMLRCIPQPADSLP*STAHGP
Trigger: TGGGCCGTGTGCTGTACTCCATGGCAAACTGTCTGC...CGGCTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp AGTATTGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCATTGGAGGACACTTCTaGGGTCTGCTCTTCTCGGGG +
Preference number: 4 (lower is better)
Translates to: SIVQLHGRQVSGSEGSPAIGGHF*GLLFSG
Trigger: CCCCGAGAAGAGCAGACCTCAGAAGTGTCCTCCAAT...GGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp CCCCACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTGCTATTGGAGGACACTTCTaGGGTCTGCTCTTCTCGGGG +
Preference number: 4 (lower is better)
Translates to: PHCSSIEWSLVQATSSVAIGGHF*GLLFSG
Trigger: CCCCGAGAAGAGCAGACCTCAGAAGTGTCCTCCAAT...AGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp GAACCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGGCCGCAGGGAGTCCTTaGGCTTTCCCAGGTAAAGCA +
Preference number: 4 (lower is better)
Translates to: EPMPSDREAQMMLRCIPQAAGSP*AFPGKA
Trigger: TGCTTTACCTGGGAAAGCTCAAGGACTCCCTGCGGC...CTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp AGTATTGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCCTGACTGGGAAGCCATaGGTCATTCCTCCGGTCCAT +
Preference number: 4 (lower is better)
Translates to: SIVQLHGRQVSGSEGSPALTGKP*VIPPVH
Trigger: ATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAG...GGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAACCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGTCCACACAGGTCGACTaGTGCCCTCCAGTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: EPMPSDREAQMMLRCIPQSTQVD*CPPVPA
Trigger: TGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGA...CTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp TCTTGCCTTCAGGCACAGGAGCGCATAGATGCTGTGCCAGCCCATGATGCTCCTATTGGAGGACACTTCTaGGGTCTGCTCTTCTCGGGG +
Preference number: 4 (lower is better)
Translates to: SCLQAQERIDAVPAHDAPIGGHF*GLLFSG
Trigger: CCCCGAGAAGAGCAGACCTCAGAAGTGTCCTCCAAT...AGGAGCATCATGGGCTGGCACAGCATCTATGCGCTCCTGTGCCTGAAGGCAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGCCGCAGGGAGTCCTTaGGCTTTCCCAGGTAAAGCA +
Preference number: 4 (lower is better)
Translates to: EEPAVLLMELGWNPCPQIAAGSP*AFPGKA
Trigger: TGCTTTACCTGGGAAAGCTCAAGGACTCCCTGCGGC...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GAACCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGACATGGTGGTCAGGTTaGAGAGCACGCTCTCGTGCA +
Preference number: 4 (lower is better)
Translates to: EPMPSDREAQMMLRCIPQTWWSG*RARSRA
Trigger: TGCACGAGAGCGTGCTCTTCAACCTGACCACCATGT...CTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp AGTATTGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCTCAGGCACTGTGTGTTaGAGCTGTCCCCTTCTTTGC +
Preference number: 4 (lower is better)
Translates to: SIVQLHGRQVSGSEGSPASGTVC*SCPLLC
Trigger: GCAAAGAAGGGGACAGCTTCAACACACAGTGCCTGA...GGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTGCTCAGGCAAGGGCTCGTCTTTaGAGGAGGACTGATTGGAGG +
Preference number: 4 (lower is better)
Translates to: HCSSIEWSLVQATSSVAQARARL*RRTDWR
Trigger: CCTCCAATCAGTCCTCCTCCAAAGACGAGCCCTTGC...CTGAGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp TGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAATCCATCTCAGCATTCTaGAAAAGGCCCAACTTCACC +
Preference number: 4 (lower is better)
Translates to: CNCMVGRSAGLRVAQPAESISAF*KRPNFT
Trigger: GGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGA...TTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp AGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGGCATCCACTCAGCAGCTGTaGCTCCTGCTCCGGGTAGTA +
Preference number: 4 (lower is better)
Translates to: SSFAYGAGVEPMPSDREASTQQL*LLLRVV
Trigger: TACTACCCGGAGCAGGAGCCACAGCTGCTGAGTGGA...TGCCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp ATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAAGGCATGCTCTTAACTGCATCTCCCTaGATGTTGTCAAACTTGAGG +
Preference number: 4 (lower is better)
Translates to: MVGRSAGLRVAQPAEGMLLTASP*MLSNLR
Trigger: CCTCAAGTTTGACAACATTCAGGGAGATGCAGTTAA...GAGCATGCCTTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp TATCCCCACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTCTGACTGGGAAGCCATaGGTCATTCCTCCGGTCCAT +
Preference number: 4 (lower is better)
Translates to: YPHCSSIEWSLVQATSSVLTGKP*VIPPVH
Trigger: ATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAG...AACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR GCA 90 bp GTGACTTTGGCACCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCATCCACACAGGTCGACTaGTGCCCTCCAGTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: VTLAPCLTLYTAPTTCLPSTQVD*CPPVPA
Trigger: TGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGA...TGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGTGCCAAAGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp CCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGCCGTCAATGGTCTCTTCATaGTACAATGGCTGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: PMPSDREAQMMLRCIPQPSMVSS*YNGWLS
Trigger: GGAGAGCCAGCCATTGTACCATGAAGAGACCATTGA...CGGCTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGCCGCAGCTTTTCTGGAACTaGGGAACCTGCATTGGGATT +
Preference number: 4 (lower is better)
Translates to: PMPSDREAQMMLRCIPQPQLFWN*GTCIGI
Trigger: AATCCCAATGCAGGTTCCCCAGTTCCAGAAAAGCTG...CGGCTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp TATCCCCACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTTCATGCTCAGGGCTGTaGCGAAGGGGTCATCACTTC +
Preference number: 4 (lower is better)
Translates to: YPHCSSIEWSLVQATSSVSCSGL*RRGHHF
Trigger: GAAGTGATGACCCCTTCGCCACAGCCCTGAGCATGA...AACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGCAGACAGTTTGCCATaGAGTACAGCACACGGCCCA +
Preference number: 4 (lower is better)
Translates to: EEPAVLLMELGWNPCPQIADSLP*STAHGP
Trigger: TGGGCCGTGTGCTGTACTCCATGGCAAACTGTCTGC...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CAA 72 bp GCCATGCATATGGCTCACCTTCACCAACAGGCAGTATaGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTG +
Preference number: 4 (lower is better)
Translates to: AMHMAHLHQQAV*CNCMVGRSAGL
Trigger: CAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCATATGCATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp TCTTGCCTTCAGGCACAGGAGCGCATAGATGCTGTGCCAGCCCATGATGCTCCTGCTACTGAAACTGGGTaGTTTCACCATCTGGGACTC +
Preference number: 4 (lower is better)
Translates to: SCLQAQERIDAVPAHDAPATETG*FHHLGL
Trigger: GAGTCCCAGATGGTGAAATCACCCAGTTTCAGTAGC...AGGAGCATCATGGGCTGGCACAGCATCTATGCGCTCCTGTGCCTGAAGGCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp CTACCTGGGGGCCTTCTGGAAGGTAGGCTTCCCACAGGGAAGAGGCTTCTCAGACACAGCCTGGATCTGTaGAAATGGCTTTGGAGATTC +
Preference number: 4 (lower is better)
Translates to: LPGGLLEGRLPTGKRLLRHSLDL*KWLWRF
Trigger: GAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTG...TCTGAGAAGCCTCTTCCCTGTGGGAAGCCTACCTTCCAGAAGGCCCCCAGGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp TGTACACTTCGGTGTTTCCACCCAGTTTGTGTGGCTCCAGATGTCCTCCTGTCTACTTCTCTGGTCGCCTaGCTGGGAAGCCATGCGTCA +
Preference number: 4 (lower is better)
Translates to: CTLRCFHPVCVAPDVLLSTSLVA*LGSHAS
Trigger: TGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGT...AGACAGGAGGACATCTGGAGCCACACAAACTGGGTGGAAACACCGAAGTGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp AGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGGCATCAGGCACTGTGTGTTaGAGCTGTCCCCTTCTTTGC +
Preference number: 4 (lower is better)
Translates to: SSFAYGAGVEPMPSDREASGTVC*SCPLLC
Trigger: GCAAAGAAGGGGACAGCTTCAACACACAGTGCCTGA...TGCCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp ATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAAGGCATGCTCACACTTTCCATCATGTaGTCATTAAGCTTATCTCCG +
Preference number: 4 (lower is better)
Translates to: MVGRSAGLRVAQPAEGMLTLSIM*SLSLSP
Trigger: CGGAGATAAGCTTAATGAGCACATGATGGAAAGTGT...GAGCATGCCTTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGACCTGTCTCTTTGCTaGAGCCTTCTCACCCAGGAA +
Preference number: 4 (lower is better)
Translates to: EEPAVLLMELGWNPCPQIDLSLC*SLLTQE
Trigger: TTCCTGGGTGAGAAGGCTGCAGCAAAGAGACAGGTC...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp CAGCCCCTACCACTTGCTTGCCACAATATTTACACAGGCCATGACCCCTGCTTTACACAGGTCGACTGCTaGCCTCCAGTTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: QPLPLACHNIYTGHDPCFTQVDC*PPVPAA
Trigger: AGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGT...AAAGCAGGGGTCATGGCCTGTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR GCA 90 bp CCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTACACGGACCATGGAGCCCCTaGGTCCTGGGTACACGTGTG +
Preference number: 4 (lower is better)
Translates to: PCLTLYTAPTTCLPQYLHGPWSP*VLGTRV
Trigger: CACACGTGTACCCAGGACGCAGGGGCTCCATGGTCC...GTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp AGGCCTGGTCAGGATGTACACTTCGGTGTTTCCACCCAGTTTGTGTGGCTCCAGGAGACCCTTCCGATGTaGGCTCGTTCTCTTCAGATG +
Preference number: 4 (lower is better)
Translates to: RPGQDVHFGVSTQFVWLQETLPM*ARSLQM
Trigger: CATCTGAAGAGAACGAGCCCACATCGGAAGGGTCTC...CTGGAGCCACACAAACTGGGTGGAAACACCGAAGTGTACATCCTGACCAGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp TTTGGCACCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATAGCCCGACTTCCTCCGTaGCAGCATTCTCCAGTGCAG +
Preference number: 4 (lower is better)
Translates to: FGTLLDSVYSPYHLLATIARLPP*QHSPVQ
Trigger: CTGCACTGGAGAATGCTGCCACGGAGGAAGTCGGGC...TATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGTGCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp AGGCCTGGTCAGGATGTACACTTCGGTGTTTCCACCCAGTTTGTGTGGCTCCAGTGGAGTAAGATGGGCTaGTGGAATCCGGGGACTTCT +
Preference number: 4 (lower is better)
Translates to: RPGQDVHFGVSTQFVWLQWSKMG*WNPGTS
Trigger: AGAAGTCCCCGGATTCCACCAGCCCATCTTACTCCA...CTGGAGCCACACAAACTGGGTGGAAACACCGAAGTGTACATCCTGACCAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp AGTATTGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCATCTATCCATCCTTGTaGAGTAAGATGGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: SIVQLHGRQVSGSEGSPAIYPSL*SKMGWW
Trigger: CCACCAGCCCATCTTACTCCACAAGGATGGATAGAT...GGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGCCGCCAGCAAACACAGCCTaGATCTGTGAAAATGGCTTT +
Preference number: 4 (lower is better)
Translates to: PMPSDREAQMMLRCIPQPPANTA*ICENGF
Trigger: AAAGCCATTTTCACAGATCCAGGCTGTGTTTGCTGG...CGGCTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CAA 72 bp ACCGCCGTGATCAAGTTCAGTCATGGAGAGAGGTACTaGGAACTGAGTGGGCAGGCCGTGGGAAGAAACACT +
Preference number: 4 (lower is better)
Translates to: TAVIKFSHGERY*ELSGQAVGRNT
Trigger: AGTGTTTCTTCCCACGGCCTGCCCACTCAGTTCCAAGTACCTCTCTCCATGACTGAACTTGATCACGGCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp GGAGAGAGGTACTTGGAACTGAGTGGGCAGGCCGTGGGAAGAAACACTGAAGGTTCTTTGGAGGAGGACTaGTTGGAGGACACTTCTGAG +
Preference number: 4 (lower is better)
Translates to: GERYLELSGQAVGRNTEGSLEED*LEDTSE
Trigger: CTCAGAAGTGTCCTCCAATCAGTCCTCCTCCAAAGA...ACCTTCAGTGTTTCTTCCCACGGCCTGCCCACTCAGTTCCAAGTACCTCTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp CACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTGCTCAGTCTCACTGGTGCTACTaGAACTGGGTGATTTCACCA +
Preference number: 4 (lower is better)
Translates to: HCSSIEWSLVQATSSVAQSHWCY*NWVISP
Trigger: TGGTGAAATCACCCAGTTTCAGTAGCACCAGTGAGA...CTGAGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp TATCCCCACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTTACAGGGGCAGTGAGTaGAGACAGCTTTTCTGGAAC +
Preference number: 4 (lower is better)
Translates to: YPHCSSIEWSLVQATSSVYRGSE*RQLFWN
Trigger: GTTCCAGAAAAGCTGTCTTCACTCACTGCCCCTGTA...AACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCCTTTTGCATGCTCCTTaGGGACTCCAGCTCGTACAT +
Preference number: 4 (lower is better)
Translates to: EEPAVLLMELGWNPCPQILLHAP*GLQLVH
Trigger: ATGTACGAGCTGGAGTCCTCAAGGAGCATGCAAAAG...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAGAGGTACTTGGAACTGAGTGGGCAGGCCGTGGGAAGAAACACTGAAGGTGAAGACCTGTCTCTTTGCTaGAGCCTTCTCACCCAGGAA +
Preference number: 4 (lower is better)
Translates to: ERYLELSGQAVGRNTEGEDLSLC*SLLTQE
Trigger: TTCCTGGGTGAGAAGGCTGCAGCAAAGAGACAGGTC...TTCACCTTCAGTGTTTCTTCCCACGGCCTGCCCACTCAGTTCCAAGTACCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR GCA 90 bp GAACCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGTCTGCTTCTTTTGCATaGTCCTTGAGGACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: EPMPSDREAQMMLRCIPQSASFA*SLRTPA
Trigger: AGCTGGAGTCCTCAAGGAGCATGCAAAAGAAGCAGA...CTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp TCTTGCCTTCAGGCACAGGAGCGCATAGATGCTGTGCCAGCCCATGATGCTCCTGCCTCAAGTAGGCTCTaGTTCTTTTGCATGCTCCTT +
Preference number: 4 (lower is better)
Translates to: SCLQAQERIDAVPAHDAPASSRL*FFCMLL
Trigger: AAGGAGCATGCAAAAGAAGCAGAGCCTACTTGAGGC...AGGAGCATCATGGGCTGGCACAGCATCTATGCGCTCCTGTGCCTGAAGGCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCAGGAGATGCCTCACTTaGGCTCTGCTCACCATCTTT +
Preference number: 4 (lower is better)
Translates to: EEPAVLLMELGWNPCPQIRRCLT*ALLTIF
Trigger: AAAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCT...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GGAGAGAGGTACTTGGAACTGAGTGGGCAGGCCGTGGGAAGAAACACTGAAGGTAGGAGATGCCTCACTTaGGCTCTGCTCACCATCTTT +
Preference number: 4 (lower is better)
Translates to: GERYLELSGQAVGRNTEGRRCLT*ALLTIF
Trigger: AAAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCT...ACCTTCAGTGTTTCTTCCCACGGCCTGCCCACTCAGTTCCAAGTACCTCTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp TCTTTACCATGGCTACCTGGGGGCCTTCTGGAAGGTAGGCTTCCCACAGGGAAGTCAATGGTCTCTTCATaGTACAATGGCTGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: SLPWLPGGLLEGRLPTGKSMVSS*YNGWLS
Trigger: GGAGAGCCAGCCATTGTACCATGAAGAGACCATTGA...CTTCCCTGTGGGAAGCCTACCTTCCAGAAGGCCCCCAGGTAGCCATGGTAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp AGGCCTGGTCAGGATGTACACTTCGGTGTTTCCACCCAGTTTGTGTGGCTCCAGTGGAGGAGGACTGATTaGAGGACACTTCTGAGGTCT +
Preference number: 4 (lower is better)
Translates to: RPGQDVHFGVSTQFVWLQWRRTD*RTLLRS
Trigger: AGACCTCAGAAGTGTCCTCCAATCAGTCCTCCTCCA...CTGGAGCCACACAAACTGGGTGGAAACACCGAAGTGTACATCCTGACCAGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp ATGCCATGCATATGGCTCACCTTCACCAACAGGCAGTATTGTGCAACTGCATGGTCCACTCAGCAGCTGTaGCTCCTGCTCCGGGTAGTA +
Preference number: 4 (lower is better)
Translates to: MPCIWLTFTNRQYCATAWSTQQL*LLLRVV
Trigger: TACTACCCGGAGCAGGAGCCACAGCTGCTGAGTGGA...CCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCATATGCATGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp TTTATTACAGACATGAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCGTGCAGGTAGTGCCTaGGGTCCTGCTGCACCATGG +
Preference number: 4 (lower is better)
Translates to: FITDMKSQQFCLWSWGGTRAGSA*GPAAPW
Trigger: CCATGGTGCAGCAGGACCCCAGGCACTACCTGCACG...GGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CAA 72 bp GGCACCCTGCTTGACTCTGTATACAGCCCCTACCACTaGCTTGCCACAATATTTACACAGGCCATGACCCCT +
Preference number: 4 (lower is better)
Translates to: GTLLDSVYSPYH*LATIFTQAMTP
Trigger: AGGGGTCATGGCCTGTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp CACACCCATCAAATGCTTTTACTGACCCATCTGCTCAAGTGTCTGCAGGTACAGACTTCTCTGGTCGCCTaGCTGGGAAGCCATGCGTCA +
Preference number: 4 (lower is better)
Translates to: HTHQMLLLTHLLKCLQVQTSLVA*LGSHAS
Trigger: TGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGT...CTGTACCTGCAGACACTTGAGCAGATGGGTCAGTAAAAGCATTTGATGGGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp CACACCCATCAAATGCTTTTACTGACCCATCTGCTCAAGTGTCTGCAGGTACAGACACAGGTCGACTGCTaGCCTCCAGTTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: HTHQMLLLTHLLKCLQVQTQVDC*PPVPAA
Trigger: AGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGT...CTGTACCTGCAGACACTTGAGCAGATGGGTCAGTAAAAGCATTTGATGGGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTACACAAGGAGTCTGTGGTGTaGCTGGTGGGCAGCCCATTC +
Preference number: 4 (lower is better)
Translates to: PCLTLYTAPTTCLPQYLHKESVV*LVGSPF
Trigger: GAATGGGCTGCCCACCAGCCACACCACAGACTCCTT...GTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp TCTTGCCTTCAGGCACAGGAGCGCATAGATGCTGTGCCAGCCCATGATGCTCCTAGTCCATCCAACTTCTaGGTTACTTTCTCAACGTCT +
Preference number: 4 (lower is better)
Translates to: SCLQAQERIDAVPAHDAPSPSNF*VTFSTS
Trigger: AGACGTTGAGAAAGTAACTCAGAAGTTGGATGGACT...AGGAGCATCATGGGCTGGCACAGCATCTATGCGCTCCTGTGCCTGAAGGCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CACACCCATCAAATGCTTTTACTGACCCATCTGCTCAAGTGTCTGCAGGTACAGCTCTTCATGGTACAATaGCTGGCTCTCCTCCTCCCG +
Preference number: 4 (lower is better)
Translates to: HTHQMLLLTHLLKCLQVQLFMVQ*LALLLP
Trigger: CGGGAGGAGGAGAGCCAGCCATTGTACCATGAAGAG...CTGTACCTGCAGACACTTGAGCAGATGGGTCAGTAAAAGCATTTGATGGGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp ATGCCATGCATATGGCTCACCTTCACCAACAGGCAGTATTGTGCAACTGCATGGGAGACCCTTCCGATGTaGGCTCGTTCTCTTCAGATG +
Preference number: 4 (lower is better)
Translates to: MPCIWLTFTNRQYCATAWETLPM*ARSLQM
Trigger: CATCTGAAGAGAACGAGCCCACATCGGAAGGGTCTC...CCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCATATGCATGGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp TTCCCACAGGGAAGAGGCTTCTCAGAGTGCTCTTGGACACTTGAAGAATTATTAGATCAGTGGCACCTCTaGGGGGCTCCCCAACATCCT +
Preference number: 4 (lower is better)
Translates to: FPQGRGFSECSWTLEELLDQWHL*GAPQHP
Trigger: AGGATGTTGGGGAGCCCCCCAGAGGTGCCACTGATC...TAATAATTCTTCAAGTGTCCAAGAGCACTCTGAGAAGCCTCTTCCCTGTGGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp GAGAGGTACTTGGAACTGAGTGGGCAGGCCGTGGGAAGAAACACTGAAGGTGAAATCTATCCATCCTTGTaGAGTAAGATGGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: ERYLELSGQAVGRNTEGEIYPSL*SKMGWW
Trigger: CCACCAGCCCATCTTACTCCACAAGGATGGATAGAT...TTCACCTTCAGTGTTTCTTCCCACGGCCTGCCCACTCAGTTCCAAGTACCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp GTGACTTTGGCACCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCATCCATCTCAGCATTCTaGAAAAGGCCCAACTTCACC +
Preference number: 4 (lower is better)
Translates to: VTLAPCLTLYTAPTTCLPSISAF*KRPNFT
Trigger: GGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGA...TGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGTGCCAAAGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp GGCACCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTGCTACTGAAACTGGGTaGTTTCACCATCTGGGACTC +
Preference number: 4 (lower is better)
Translates to: GTLLDSVYSPYHLLATIFATETG*FHHLGL
Trigger: GAGTCCCAGATGGTGAAATCACCCAGTTTCAGTAGC...AAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp TATCCCCACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTTTAACTGCATCTCCCTaGATGTTGTCAAACTTGAGG +
Preference number: 4 (lower is better)
Translates to: YPHCSSIEWSLVQATSSVLTASP*MLSNLR
Trigger: CCTCAAGTTTGACAACATTCAGGGAGATGCAGTTAA...AACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR TCA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCAGTCCATCCAACTTCTaGGTTACTTTCTCAACGTCT +
Preference number: 4 (lower is better)
Translates to: EEPAVLLMELGWNPCPQISPSNF*VTFSTS
Trigger: AGACGTTGAGAAAGTAACTCAGAAGTTGGATGGACT...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCACATGGTGGTCAGGTTaGAGAGCACGCTCTCGTGCA +
Preference number: 4 (lower is better)
Translates to: GNGRPFPGPLHFAKWKKRTWWSG*RARSRA
Trigger: TGCACGAGAGCGTGCTCTTCAACCTGACCACCATGT...GCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp ATGCCATGCATATGGCTCACCTTCACCAACAGGCAGTATTGTGCAACTGCATGGCTTTTGCATGCTCCTTaGGGACTCCAGCTCGTACAT +
Preference number: 4 (lower is better)
Translates to: MPCIWLTFTNRQYCATAWLLHAP*GLQLVH
Trigger: ATGTACGAGCTGGAGTCCTCAAGGAGCATGCAAAAG...CCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCATATGCATGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp CCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTACACCTCACAAACCAGAGCTaGAAGGAGTCTGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: PCLTLYTAPTTCLPQYLHLTNQS*KESVVW
Trigger: CCACACCACAGACTCCTTGCAGCTCTGGTTTGTGAG...GTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR GCA 90 bp AGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGGCAATTGTTGTTGGCCACTaGATTTGTTGGGTCCATTCT +
Preference number: 4 (lower is better)
Translates to: SSFAYGAGVEPMPSDREAIVVGH*ICWVHS
Trigger: AGAATGGACCCAACAAATGCAGTGGCCAACAACAAT...TGCCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp ACCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTACACTCTTCATGGTACAATaGCTGGCTCTCCTCCTCCCG +
Preference number: 4 (lower is better)
Translates to: TLLDSVYSPYHLLATIFTLFMVQ*LALLLP
Trigger: CGGGAGGAGGAGAGCCAGCCATTGTACCATGAAGAG...TGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp GAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATGATCAGTGGCACCTCTaGGGGGCTCCCCAACATCCT +
Preference number: 4 (lower is better)
Translates to: ERKTISRSFTFCKVEKAHDQWHL*GAPQHP
Trigger: AGGATGTTGGGGAGCCCCCCAGAGGTGCCACTGATC...ATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GCCTATAGTGAGAACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTGACCGGACCATGGAGCCCCTaGGTCCTGGGTACACGTGTG +
Preference number: 4 (lower is better)
Translates to: AYSENRQYYLPNEYSEVTGPWSP*VLGTRV
Trigger: CACACGTGTACCCAGGACGCAGGGGCTCCATGGTCC...GGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGTTCTCACTATAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCCAGGAGCAGACAGTTTaGCATGGAGTACAGCACACG +
Preference number: 4 (lower is better)
Translates to: GNGRPFPGPLHFAKWKKRQEQTV*HGVQHT
Trigger: CGTGTGCTGTACTCCATGGCAAACTGTCTGCTCCTG...GCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATAGCCCGACTTCCTCCGTaGCAGCATTCTCCAGTGCAG +
Preference number: 4 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIARLPP*QHSPVQ
Trigger: CTGCACTGGAGAATGCTGCCACGGAGGAAGTCGGGC...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCTGGAGTAAGATGGGCTaGTGGAATCCGGGGACTTCT +
Preference number: 4 (lower is better)
Translates to: GNGRPFPGPLHFAKWKKRWSKMG*WNPGTS
Trigger: AGAAGTCCCCGGATTCCACCAGCCCATCTTACTCCA...GCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CAGCCCCTACCACTTGCTTGCCACAATATTTACACAGGCCATGACCCCTGCTTTCCAGCAAACACAGCCTaGATCTGTGAAAATGGCTTT +
Preference number: 4 (lower is better)
Translates to: QPLPLACHNIYTGHDPCFPANTA*ICENGF
Trigger: AAAGCCATTTTCACAGATCCAGGCTGTGTTTGCTGG...AAAGCAGGGGTCATGGCCTGTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAAGGAGTCTGTGGTGTaGCTGGTGGGCAGCCCATTC +
Preference number: 4 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKKESVV*LVGSPF
Trigger: GAATGGGCTGCCCACCAGCCACACCACAGACTCCTT...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CACACCCATCAAATGCTTTTACTGACCCATCTGCTCAAGTGTCTGCAGGTACAGAGCCTTGCTCCAAGTTaGCCAAGATCTTGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: HTHQMLLLTHLLKCLQVQSLAPS*PRSCCR
Trigger: TCTGCAGCAAGATCTTGGCCAACTTGGAGCAAGGCT...CTGTACCTGCAGACACTTGAGCAGATGGGTCAGTAAAAGCATTTGATGGGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GAGCTGAATAATCAAAGCAATACTTTTGTTTGGGATATGGAGGGAGGAAGACAACGTGCAGGTAGTGCCTaGGGTCCTGCTGCACCATGG +
Preference number: 4 (lower is better)
Translates to: ELNNQSNTFVWDMEGGRQRAGSA*GPAAPW
Trigger: CCATGGTGCAGCAGGACCCCAGGCACTACCTGCACG...TTGTCTTCCTCCCTCCATATCCCAAACAAAAGTATTGCTTTGATTATTCAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GAGCTGAATAATCAAAGCAATACTTTTGTTTGGGATATGGAGGGAGGAAGACAAAGGACCTGCCTGGGCTaGAGGAGATGCCTCACTTGG +
Preference number: 4 (lower is better)
Translates to: ELNNQSNTFVWDMEGGRQRTCLG*RRCLTW
Trigger: CCAAGTGAGGCATCTCCTTCAGCCCAGGCAGGTCCT...TTGTCTTCCTCCCTCCATATCCCAAACAAAAGTATTGCTTTGATTATTCAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp CACACCCATCAAATGCTTTTACTGACCCATCTGCTCAAGTGTCTGCAGGTACAGTCTCACTGGTGCTACTaGAACTGGGTGATTTCACCA +
Preference number: 4 (lower is better)
Translates to: HTHQMLLLTHLLKCLQVQSHWCY*NWVISP
Trigger: TGGTGAAATCACCCAGTTTCAGTAGCACCAGTGAGA...CTGTACCTGCAGACACTTGAGCAGATGGGTCAGTAAAAGCATTTGATGGGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAACTTCTCTGGTCGCCTaGCTGGGAAGCCATGCGTCA +
Preference number: 4 (lower is better)
Translates to: GRPFPGPLHFAKWKKRIQTSLVA*LGSHAS
Trigger: TGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGT...TTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAACGAGACCTCCACAGCTaGACAGAGGCTTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: GRPFPGPLHFAKWKKRIQRDLHS*TEACLL
Trigger: AAGCAGGCAAGCCTCTGTTCAGCTGTGGAGGTCTCG...TTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACGAGACCTCCACAGCTaGACAGAGGCTTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIRDLHS*TEACLL
Trigger: AAGCAGGCAAGCCTCTGTTCAGCTGTGGAGGTCTCG...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAACTGACTGGGAAGCCATaGGTCATTCCTCCGGTCCAT +
Preference number: 4 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQLTGKP*VIPPVH
Trigger: ATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAG...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGTCCACACAGGTCGACTaGTGCCCTCCAGTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: EDHFQVLYILQSGKSAYKSTQVD*CPPVPA
Trigger: TGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGA...CTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAATCATGGTACAATGGCTaGCTCTCCTCCTCCCGAGAC +
Preference number: 4 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKSWYNG*LSSSRD
Trigger: GTCTCGGGAGGAGGAGAGCCAGCCATTGTACCATGA...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAACTCTTCATGGTACAATaGCTGGCTCTCCTCCTCCCG +
Preference number: 4 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKLFMVQ*LALLLP
Trigger: CGGGAGGAGGAGAGCCAGCCATTGTACCATGAAGAG...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GAGCTGAATAATCAAAGCAATACTTTTGTTTGGGATATGGAGGGAGGAAGACAAGCCCGACTTCCTCCGTaGCAGCATTCTCCAGTGCAG +
Preference number: 4 (lower is better)
Translates to: ELNNQSNTFVWDMEGGRQARLPP*QHSPVQ
Trigger: CTGCACTGGAGAATGCTGCCACGGAGGAAGTCGGGC...TTGTCTTCCTCCCTCCATATCCCAAACAAAAGTATTGCTTTGATTATTCAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp TTTATTACAGACATGAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCTGGAGGAGGACTGATTaGAGGACACTTCTGAGGTCT +
Preference number: 4 (lower is better)
Translates to: FITDMKSQQFCLWSWGGTWRRTD*RTLLRS
Trigger: AGACCTCAGAAGTGTCCTCCAATCAGTCCTCCTCCA...GGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GCCTATAGTGAGAACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTGACCAGAAACAGGTGTGGCTaGGAGGGAGTGGCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: AYSENRQYYLPNEYSEVTRNRCG*EGVAVA
Trigger: GGCTACCGCCACTCCCTCCCAGCCACACCTGTTTCT...GGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGTTCTCACTATAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTACACCAGCTTTTCTGGAACTaGGGAACCTGCATTGGGATT +
Preference number: 4 (lower is better)
Translates to: PCLTLYTAPTTCLPQYLHQLFWN*GTCIGI
Trigger: AATCCCAATGCAGGTTCCCCAGTTCCAGAAAAGCTG...GTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp GAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATTCATGCTCAGGGCTGTaGCGAAGGGGTCATCACTTC +
Preference number: 4 (lower is better)
Translates to: ERKTISRSFTFCKVEKAHSCSGL*RRGHHF
Trigger: GAAGTGATGACCCCTTCGCCACAGCCCTGAGCATGA...ATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTACACACTGCTCCACTGAGCTaGCATTTAAGACCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: PCLTLYTAPTTCLPQYLHTAPLS*HLRPVS
Trigger: AGAGACAGGTCTTAAATGCCAGCTCAGTGGAGCAGT...GTGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp GGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAAAGGAGTCTGTGGTGTaGCTGGTGGGCAGCCCATTC +
Preference number: 4 (lower is better)
Translates to: GRPFPGPLHFAKWKKRIQKESVV*LVGSPF
Trigger: GAATGGGCTGCCCACCAGCCACACCACAGACTCCTT...TTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp TTTATTACAGACATGAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCTCTCACTGGTGCTACTaGAACTGGGTGATTTCACCA +
Preference number: 4 (lower is better)
Translates to: FITDMKSQQFCLWSWGGTSHWCY*NWVISP
Trigger: TGGTGAAATCACCCAGTTTCAGTAGCACCAGTGAGA...GGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp TTTATTACAGACATGAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCACAGCCTGGATCTGTaGAAATGGCTTTGGAGATTC +
Preference number: 4 (lower is better)
Translates to: FITDMKSQQFCLWSWGGTHSLDL*KWLWRF
Trigger: GAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTG...GGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp ATGCCATGCATATGGCTCACCTTCACCAACAGGCAGTATTGTGCAACTGCATGGTCTGTGAAGAACTTGTaGGCTTCTGCGAAGTTATTC +
Preference number: 4 (lower is better)
Translates to: MPCIWLTFTNRQYCATAWSVKNL*ASAKLF
Trigger: GAATAACTTCGCAGAAGCTCACAAGTTCTTCACAGA...CCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCATATGCATGGCAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAACTCACAAACCAGAGCTaGAAGGAGTCTGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQLTNQS*KESVVW
Trigger: CCACACCACAGACTCCTTGCAGCTCTGGTTTGTGAG...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp CACACCCATCAAATGCTTTTACTGACCCATCTGCTCAAGTGTCTGCAGGTACAGATACTGCTGCAGTTCTaGATGCAGAATACGCATCGA +
Preference number: 4 (lower is better)
Translates to: HTHQMLLLTHLLKCLQVQILLQF*MQNTHR
Trigger: TCGATGCGTATTCTGCATGCAGAACTGCAGCAGTAT...CTGTACCTGCAGACACTTGAGCAGATGGGTCAGTAAAAGCATTTGATGGGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAGAGACCCTTCCGATGTaGGCTCGTTCTCTTCAGATG +
Preference number: 4 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKETLPM*ARSLQM
Trigger: CATCTGAAGAGAACGAGCCCACATCGGAAGGGTCTC...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCAGAAACAGGTGTGGCTaGGAGGGAGTGGCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCRNRCG*EGVAVA
Trigger: GGCTACCGCCACTCCCTCCCAGCCACACCTGTTTCT...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAATGGAGTAAGATGGGCTaGTGGAATCCGGGGACTTCT +
Preference number: 4 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQWSKMG*WNPGTS
Trigger: AGAAGTCCCCGGATTCCACCAGCCCATCTTACTCCA...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGTCATGCTCAGGGCTGTaGCGAAGGGGTCATCACTTC +
Preference number: 4 (lower is better)
Translates to: EDHFQVLYILQSGKSAYKSCSGL*RRGHHF
Trigger: GAAGTGATGACCCCTTCGCCACAGCCCTGAGCATGA...CTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCACTGCTCCACTGAGCTaGCATTTAAGACCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: GNGRPFPGPLHFAKWKKRTAPLS*HLRPVS
Trigger: AGAGACAGGTCTTAAATGCCAGCTCAGTGGAGCAGT...GCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
3UTR CAA 72 bp TTTTCACTTTATTACAGACATGAAGAGCCAGCAGTTTaGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: FSLYYRHEEPAV*LMELGWNPCPQ
Trigger: CTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAAGTGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAATCTTTGGAGGAGGACTaGTTGGAGGACACTTCTGAG +
Preference number: 4 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKSLEED*LEDTSE
Trigger: CTCAGAAGTGTCCTCCAATCAGTCCTCCTCCAAAGA...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGGACCTGTCTCTTTGCTaGAGCCTTCTCACCCAGGAA +
Preference number: 4 (lower is better)
Translates to: EDHFQVLYILQSGKSAYKDLSLC*SLLTQE
Trigger: TTCCTGGGTGAGAAGGCTGCAGCAAAGAGACAGGTC...CTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCACACAGGTCGACTGCTaGCCTCCAGTTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCTQVDC*PPVPAA
Trigger: AGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGT...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GCCTATAGTGAGAACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTGACCTCATGGTACAATGGCTaGCTCTCCTCCTCCCGAGAC +
Preference number: 4 (lower is better)
Translates to: AYSENRQYYLPNEYSEVTSWYNG*LSSSRD
Trigger: GTCTCGGGAGGAGGAGAGCCAGCCATTGTACCATGA...GGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGTTCTCACTATAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp CACACCCATCAAATGCTTTTACTGACCCATCTGCTCAAGTGTCTGCAGGTACAGCTCCACCAAGATCAATaGTCTCTTCATGGTACAATG +
Preference number: 4 (lower is better)
Translates to: HTHQMLLLTHLLKCLQVQLHQDQ*SLHGTM
Trigger: CATTGTACCATGAAGAGACCATTGATCTTGGTGGAG...CTGTACCTGCAGACACTTGAGCAGATGGGTCAGTAAAAGCATTTGATGGGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GCCTATAGTGAGAACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTGACCGCAAGGGCTCGTCTTTaGAGGAGGACTGATTGGAGG +
Preference number: 4 (lower is better)
Translates to: AYSENRQYYLPNEYSEVTARARL*RRTDWR
Trigger: CCTCCAATCAGTCCTCCTCCAAAGACGAGCCCTTGC...GGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGTTCTCACTATAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATAGCCTTGCTCCAAGTTaGCCAAGATCTTGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: ERKTISRSFTFCKVEKAHSLAPS*PRSCCR
Trigger: TCTGCAGCAAGATCTTGGCCAACTTGGAGCAAGGCT...ATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGATCAGGTGTCATGTCTaGGATGTCTCTGGGAGTGTC +
Preference number: 4 (lower is better)
Translates to: EDHFQVLYILQSGKSAYKIRCHV*DVSGSV
Trigger: GACACTCCCAGAGACATCTCAGACATGACACCTGAT...CTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATATACAGGGGCAGTGAGTaGAGACAGCTTTTCTGGAAC +
Preference number: 4 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIYRGSE*RQLFWN
Trigger: GTTCCAGAAAAGCTGTCTTCACTCACTGCCCCTGTA...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAACACAGCCTGGATCTGTaGAAATGGCTTTGGAGATTC +
Preference number: 4 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKHSLDL*KWLWRF
Trigger: GAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTG...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp TTTATTACAGACATGAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCTCTGTGAAGAACTTGTaGGCTTCTGCGAAGTTATTC +
Preference number: 4 (lower is better)
Translates to: FITDMKSQQFCLWSWGGTSVKNL*ASAKLF
Trigger: GAATAACTTCGCAGAAGCTCACAAGTTCTTCACAGA...GGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTCATGTCTGTAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp CACACCCATCAAATGCTTTTACTGACCCATCTGCTCAAGTGTCTGCAGGTACAGACACTTTCCATCATGTaGTCATTAAGCTTATCTCCG +
Preference number: 4 (lower is better)
Translates to: HTHQMLLLTHLLKCLQVQTLSIM*SLSLSP
Trigger: CGGAGATAAGCTTAATGAGCACATGATGGAAAGTGT...CTGTACCTGCAGACACTTGAGCAGATGGGTCAGTAAAAGCATTTGATGGGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCCACTTCTTTGTCTGTaGTACTGGGCAGTCGGTGAT +
Preference number: 4 (lower is better)
Translates to: EDHFQVLYILQSGKSAYKPLLCL*YWAVGD
Trigger: ATCACCGACTGCCCAGTAGCACAGACAAAGAAGTGG...CTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAACCACTTCTTTGTCTGTaGTACTGGGCAGTCGGTGAT +
Preference number: 4 (lower is better)
Translates to: GRPFPGPLHFAKWKKRIQPLLCL*YWAVGD
Trigger: ATCACCGACTGCCCAGTAGCACAGACAAAGAAGTGG...TTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp TTCCCACAGGGAAGAGGCTTCTCAGAGTGCTCTTGGACACTTGAAGAATTATTAATACTGCTGCAGTTCTaGATGCAGAATACGCATCGA +
Preference number: 4 (lower is better)
Translates to: FPQGRGFSECSWTLEELLILLQF*MQNTHR
Trigger: TCGATGCGTATTCTGCATGCAGAACTGCAGCAGTAT...TAATAATTCTTCAAGTGTCCAAGAGCACTCTGAGAAGCCTCTTCCCTGTGGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR GCA 90 bp GAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATTCTTCAGCTAAGCCTTaGTCCAAGTTGGCCAAGATC +
Preference number: 4 (lower is better)
Translates to: ERKTISRSFTFCKVEKAHSSAKP*SKLAKI
Trigger: GATCTTGGCCAACTTGGAGCAAGGCTTAGCTGAAGA...ATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGAGGAGATGCCTCACTTaGGCTCTGCTCACCATCTTT +
Preference number: 4 (lower is better)
Translates to: EDHFQVLYILQSGKSAYKRRCLT*ALLTIF
Trigger: AAAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCT...CTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAATCAATGGTCTCTTCATaGTACAATGGCTGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKSMVSS*YNGWLS
Trigger: GGAGAGCCAGCCATTGTACCATGAAGAGACCATTGA...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp ACCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCACAATATTTACACTCCACCAAGATCAATaGTCTCTTCATGGTACAATG +
Preference number: 4 (lower is better)
Translates to: TLLDSVYSPYHLLATIFTLHQDQ*SLHGTM
Trigger: CATTGTACCATGAAGAGACCATTGATCTTGGTGGAG...TGTAAATATTGTGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CCA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAACTGCTCCACTGAGCTaGCATTTAAGACCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQTAPLS*HLRPVS
Trigger: AGAGACAGGTCTTAAATGCCAGCTCAGTGGAGCAGT...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GCCTATAGTGAGAACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTGACCATCAGGTGTCATGTCTaGGATGTCTCTGGGAGTGTC +
Preference number: 4 (lower is better)
Translates to: AYSENRQYYLPNEYSEVTIRCHV*DVSGSV
Trigger: GACACTCCCAGAGACATCTCAGACATGACACCTGAT...GGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGTTCTCACTATAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAATACTGCTGCAGTTCTaGATGCAGAATACGCATCGA +
Preference number: 4 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQILLQF*MQNTHR
Trigger: TCGATGCGTATTCTGCATGCAGAACTGCAGCAGTAT...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCCAGGAGCAGACAGTTTaGCATGGAGTACAGCACACG +
Preference number: 4 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCQEQTV*HGVQHT
Trigger: CGTGTGCTGTACTCCATGGCAAACTGTCTGCTCCTG...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATAGCCTCAAGTAGGCTCTaGTTCTTTTGCATGCTCCTT +
Preference number: 4 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIASSRL*FFCMLL
Trigger: AAGGAGCATGCAAAAGAAGCAGAGCCTACTTGAGGC...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAGCTTTTCTGGAACTaGGGAACCTGCATTGGGATT +
Preference number: 4 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIQLFWN*GTCIGI
Trigger: AATCCCAATGCAGGTTCCCCAGTTCCAGAAAAGCTG...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAATCTATCCATCCTTGTaGAGTAAGATGGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: GRPFPGPLHFAKWKKRIQIYPSL*SKMGWW
Trigger: CCACCAGCCCATCTTACTCCACAAGGATGGATAGAT...TTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCTCTTTGGAGGAGGACTaGTTGGAGGACACTTCTGAG +
Preference number: 4 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCSLEED*LEDTSE
Trigger: CTCAGAAGTGTCCTCCAATCAGTCCTCCTCCAAAGA...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCGCTACTGAAACTGGGTaGTTTCACCATCTGGGACTC +
Preference number: 4 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCATETG*FHHLGL
Trigger: GAGTCCCAGATGGTGAAATCACCCAGTTTCAGTAGC...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp TTCCCACAGGGAAGAGGCTTCTCAGAGTGCTCTTGGACACTTGAAGAATTATTAACACTTTCCATCATGTaGTCATTAAGCTTATCTCCG +
Preference number: 4 (lower is better)
Translates to: FPQGRGFSECSWTLEELLTLSIM*SLSLSP
Trigger: CGGAGATAAGCTTAATGAGCACATGATGGAAAGTGT...TAATAATTCTTCAAGTGTCCAAGAGCACTCTGAGAAGCCTCTTCCCTGTGGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR GCA 90 bp GCCTATAGTGAGAACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTGACCTCTTCAGCTAAGCCTTaGTCCAAGTTGGCCAAGATC +
Preference number: 4 (lower is better)
Translates to: AYSENRQYYLPNEYSEVTSSAKP*SKLAKI
Trigger: GATCTTGGCCAACTTGGAGCAAGGCTTAGCTGAAGA...GGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGTTCTCACTATAGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAATTGTTGTTGGCCACTaGATTTGTTGGGTCCATTCT +
Preference number: 4 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQIVVGH*ICWVHS
Trigger: AGAATGGACCCAACAAATGCAGTGGCCAACAACAAT...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR GCA 90 bp GCCTATAGTGAGAACAGGCAATATTATTTACCAAACGAGTATTCAGAAGTGACCTCTGCTTCTTTTGCATaGTCCTTGAGGACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: AYSENRQYYLPNEYSEVTSASFA*SLRTPA
Trigger: AGCTGGAGTCCTCAAGGAGCATGCAAAAGAAGCAGA...GGTCACTTCTGAATACTCGTTTGGTAAATAATATTGCCTGTTCTCACTATAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp GAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATCTCCACCAAGATCAATaGTCTCTTCATGGTACAATG +
Preference number: 4 (lower is better)
Translates to: ERKTISRSFTFCKVEKAHLHQDQ*SLHGTM
Trigger: CATTGTACCATGAAGAGACCATTGATCTTGGTGGAG...ATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCTCCATCTCAGCATTCTaGAAAAGGCCCAACTTCACC +
Preference number: 4 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCSISAF*KRPNFT
Trigger: GGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGA...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR TCA 90 bp GAGCTGAATAATCAAAGCAATACTTTTGTTTGGGATATGGAGGGAGGAAGACAATTAACTGCATCTCCCTaGATGTTGTCAAACTTGAGG +
Preference number: 4 (lower is better)
Translates to: ELNNQSNTFVWDMEGGRQLTASP*MLSNLR
Trigger: CCTCAAGTTTGACAACATTCAGGGAGATGCAGTTAA...TTGTCTTCCTCCCTCCATATCCCAAACAAAAGTATTGCTTTGATTATTCAGCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CCA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCCCAGCAAACACAGCCTaGATCTGTGAAAATGGCTTT +
Preference number: 4 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCPANTA*ICENGF
Trigger: AAAGCCATTTTCACAGATCCAGGCTGTGTTTGCTGG...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 90 bp GGCTGGTGGGCAGCCCATTCTTGCCATAGCCTTGTCCGTGGGCTGTaGGCAGGCGTCCACACAGGTCGACTGCTGCCCTCCAGTTCCTGC +
Preference number: 5 (lower is better)
Translates to: GWWAAHSCHSLVRGL*AGVHTGRLLPSSSC
Trigger: GCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGACGCCTGCTCACAGCCCACGGACAAGGCTATGGCAAGAATGGGCTGCCCACCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 90 bp GCCTTGTCCGTGGGCTGTGAGCAGGCGTCCACACAGGTCGACTGCTaGCCTCCAGTTCCTGCAGCTAATGAGCTGCTTCAGCCCCACAAA +
Preference number: 5 (lower is better)
Translates to: ALSVGCEQASTQVDC*PPVPAANELLQPHK
Trigger: TTTGTGGGGCTGAAGCAGCTCATTAGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGACGCCTGCTCACAGCCCACGGACAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 90 bp ATAGCCTTGTCCGTGGGCTGTGAGCAGGCGTCCACACAGGTCGACTaGTGCCCTCCAGTTCCTGCAGCTAATGAGCTGCTTCAGCCCCAC +
Preference number: 5 (lower is better)
Translates to: IALSVGCEQASTQVD*CPPVPAANELLQPH
Trigger: GTGGGGCTGAAGCAGCTCATTAGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGACGCCTGCTCACAGCCCACGGACAAGGCTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp TGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAACAGCTGAACAGAGGCTaGCCTGCTTTCCTGGGTGAC +
Preference number: 5 (lower is better)
Translates to: CNCMVGRSAGLRVAQPAEQLNRG*PAFLGD
Trigger: GTCACCCAGGAAAGCAGGCAAGCCTCTGTTCAGCTG...TTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp ATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAAGGCATGCTCAAGTTGGCCAAGATCTaGCTGCAGACGGTCTTGACC +
Preference number: 5 (lower is better)
Translates to: MVGRSAGLRVAQPAEGMLKLAKI*LQTVLT
Trigger: GGTCAAGACCGTCTGCAGCAAGATCTTGGCCAACTT...GAGCATGCCTTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 90 bp TTTGCCATGGAGTACAGCACACGGCCCAGACGAGACCTCCACAGCTaGACAGAGGCTTGCCTGCTTTCCTGGGTGACGCTGCTCAGACCA +
Preference number: 5 (lower is better)
Translates to: FAMEYSTRPRRDLHS*TEACLLSWVTLLRP
Trigger: TGGTCTGAGCAGCGTCACCCAGGAAAGCAGGCAAGCCTCTGTTCAGCTGTGGAGGTCTCGTCTGGGCCGTGTGCTGTACTCCATGGCAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp ATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAAGGCATGCTCTCTTTTGCATGCTCCTaGAGGACTCCAGCTCGTACA +
Preference number: 5 (lower is better)
Translates to: MVGRSAGLRVAQPAEGMLSFACS*RTPART
Trigger: TGTACGAGCTGGAGTCCTCAAGGAGCATGCAAAAGA...GAGCATGCCTTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp TGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCAGCCGAAAAGCTGTCCCCTTCTTaGCTAGCAACGGCCTCAAGT +
Preference number: 5 (lower is better)
Translates to: CNCMVGRSAGLRVAQPAEKLSPS*LATASS
Trigger: ACTTGAGGCCGTTGCTAGCAAAGAAGGGGACAGCTT...TTCGGCTGGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 90 bp TTTGCATGCTCCTTGAGGACTCCAGCTCGTACATGGTGGTCAGGTTaGAGAGCACGCTCTCGTGCAGGTAGTGCCTGGGGTCCTGCTGCA +
Preference number: 5 (lower is better)
Translates to: FACSLRTPARTWWSG*RARSRAGSAWGPAA
Trigger: TGCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCAAGGAGCATGCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 90 bp CCTGACTGGGAAGCCATGCGTCATTCCTCCGGTCCATCTCACTCATaGTCAGGGCTGTGGCGAAGGGGTCATCACTTCCAGCAAACACAG +
Preference number: 5 (lower is better)
Translates to: PDWEAMRHSSGPSHS*SGLWRRGHHFQQTQ
Trigger: CTGTGTTTGCTGGAAGTGATGACCCCTTCGCCACAGCCCTGAGCATGAGTGAGATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 90 bp GGCATCCACAGCCAGCACATAGTCCTTCATCAGGAGCAGACAGTTTaGCATGGAGTACAGCACACGGCCCAGACGAGACCTCCACAGCTG +
Preference number: 5 (lower is better)
Translates to: GIHSQHIVLHQEQTV*HGVQHTAQTRPPQL
Trigger: CAGCTGTGGAGGTCTCGTCTGGGCCGTGTGCTGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGACTATGTGCTGGCTGTGGATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CCA 90 bp GCCATGCGTCATTCCTCCGGTCCATCTCACTCATGCTCAGGGCTGTaGCGAAGGGGTCATCACTTCCAGCAAACACAGCCTGGATCTGTG +
Preference number: 5 (lower is better)
Translates to: AMRHSSGPSHSCSGL*RRGHHFQQTQPGSV
Trigger: CACAGATCCAGGCTGTGTTTGCTGGAAGTGATGACCCCTTCGCCACAGCCCTGAGCATGAGTGAGATGGACCGGAGGAATGACGCATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp CCCCACTGCTCCAGCATTGAGTGGTCACTGGTGCAGGCCACTAGTAGCGTTGCTATTCTTGCCATAGCCTaGTCCGTGGGCTGTGAGCAG +
Preference number: 5 (lower is better)
Translates to: PHCSSIEWSLVQATSSVAILAIA*SVGCEQ
Trigger: CTGCTCACAGCCCACGGACAAGGCTATGGCAAGAAT...AGCAACGCTACTAGTGGCCTGCACCAGTGACCACTCAATGCTGGAGCAGTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS TCA 90 bp CTCCCGAGACATAGGCTCCGGGATGTTTTCAGGACCTGCCTGGGCTaGAGGAGATGCCTCACTTGGGCTCTGCTCACCATCTTTAGCTGT +
Preference number: 5 (lower is better)
Translates to: LPRHRLRDVFRTCLG*RRCLTWALLTIFSC
Trigger: ACAGCTAAAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCTTCAGCCCAGGCAGGTCCTGAAAACATCCCGGAGCCTATGTCTCGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 90 bp GACGAGACCTCCACAGCTGAACAGAGGCTTGCCTGCTTTCCTGGGTaGCGCTGCTCAGACCACCATCTTCAGCTAAGCCTTGCTCCAAGT +
Preference number: 5 (lower is better)
Translates to: DETSTAEQRLACFPG*RCSDHHLQLSLAPS
Trigger: ACTTGGAGCAAGGCTTAGCTGAAGATGGTGGTCTGAGCAGCGTCACCCAGGAAAGCAGGCAAGCCTCTGTTCAGCTGTGGAGGTCTCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CCA 90 bp TCCTCCTCCCGAGACATAGGCTCCGGGATGTTTTCAGGACCTGCCTaGGCTGAAGGAGATGCCTCACTTGGGCTCTGCTCACCATCTTTA +
Preference number: 5 (lower is better)
Translates to: SSSRDIGSGMFSGPA*AEGDASLGLCSPSL
Trigger: TAAAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCTTCAGCCCAGGCAGGTCCTGAAAACATCCCGGAGCCTATGTCTCGGGAGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp AGTATTGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCGTGTCCACCACTTCTTaGTCTGTGCTACTGGGCAGT +
Preference number: 5 (lower is better)
Translates to: SIVQLHGRQVSGSEGSPAVSTTS*SVLLGS
Trigger: ACTGCCCAGTAGCACAGACAAAGAAGTGGTGGACAC...GGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp CTACCTGGGGGCCTTCTGGAAGGTAGGCTTCCCACAGGGAAGAGGCTTCTCAGACCGATCTATCCATCCTaGTGGAGTAAGATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: LPGGLLEGRLPTGKRLLRPIYPS*WSKMGW
Trigger: CCAGCCCATCTTACTCCACAAGGATGGATAGATCGG...TCTGAGAAGCCTCTTCCCTGTGGGAAGCCTACCTTCCAGAAGGCCCCCAGGTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp TGCAGGCCACTAGTAGCGTTGCTCAGCACAGCAGGCCAGGCCTGGTCAGGATGTTTAAGACCTGTCTCTTaGCTGCAGCCTTCTCACCCA +
Preference number: 5 (lower is better)
Translates to: CRPLVALLSTAGQAWSGCLRPVS*LQPSHP
Trigger: TGGGTGAGAAGGCTGCAGCAAAGAGACAGGTCTTAA...ACATCCTGACCAGGCCTGGCCTGCTGTGCTGAGCAACGCTACTAGTGGCCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS TCA 90 bp GGACCATCGGAGGAGGGGTCTTGGCTGACGTCTCACTGGTGCTACTaGAACTGGGTGATTTCACCATCTGGGACTCGAAGCCATCCTGTA +
Preference number: 5 (lower is better)
Translates to: GPSEEGSWLTSHWCY*NWVISPSGTRSHPV
Trigger: TACAGGATGGCTTCGAGTCCCAGATGGTGAAATCACCCAGTTTCAGTAGCACCAGTGAGACGTCAGCCAAGACCCCTCCTCCGATGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 90 bp CCATACTGCTGGGTTGCTACTGACATCAGGACTTCTCTGGTCGCCTaGCTGGGAAGCCATGCGTCATTCCTCCGGTCCATCTCACTCATG +
Preference number: 5 (lower is better)
Translates to: PYCWVATDIRTSLVA*LGSHASFLRSISLM
Trigger: CATGAGTGAGATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGTCCTGATGTCAGTAGCAACCCAGCAGTATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 90 bp CCAGAGGGGCCCGAGAAACACCTGATTCCGATCTATCCATCCTTGTaGAGTAAGATGGGCTGGTGGAATCCGGGGACTTCTCTCCTACAG +
Preference number: 5 (lower is better)
Translates to: PEGPEKHLIPIYPSL*SKMGWWNPGTSLLQ
Trigger: CTGTAGGAGAGAAGTCCCCGGATTCCACCAGCCCATCTTACTCCACAAGGATGGATAGATCGGAATCAGGTGTTTCTCGGGCCCCTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 90 bp ACTGCTGGGTTGCTACTGACATCAGGACTTCTCTGGTCGCCTGACTaGGAAGCCATGCGTCATTCCTCCGGTCCATCTCACTCATGCTCA +
Preference number: 5 (lower is better)
Translates to: TAGLLLTSGLLWSPD*EAMRHSSGPSHSCS
Trigger: TGAGCATGAGTGAGATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGTCCTGATGTCAGTAGCAACCCAGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 90 bp ACACAGTGCCATACTGCTGGGTTGCTACTGACATCAGGACTTCTCTaGTCGCCTGACTGGGAAGCCATGCGTCATTCCTCCGGTCCATCT +
Preference number: 5 (lower is better)
Translates to: TQCHTAGLLLTSGLL*SPDWEAMRHSSGPS
Trigger: AGATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGTCCTGATGTCAGTAGCAACCCAGCAGTATGGCACTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp AGTATTGTGCAACTGCATGGTAGGCAGGTCAGCGGGTCTGAGGGTAGCCCAGCCTTAAGACCTGTCTCTTaGCTGCAGCCTTCTCACCCA +
Preference number: 5 (lower is better)
Translates to: SIVQLHGRQVSGSEGSPALRPVS*LQPSHP
Trigger: TGGGTGAGAAGGCTGCAGCAAAGAGACAGGTCTTAA...GGCTGGGCTACCCTCAGACCCGCTGACCTGCCTACCATGCAGTTGCACAATACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GAACCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGAAGCCTTGCTCCAAGTaGGCCAAGATCTTGCTGCAG +
Preference number: 5 (lower is better)
Translates to: EPMPSDREAQMMLRCIPQKPCSK*AKILLQ
Trigger: CTGCAGCAAGATCTTGGCCAACTTGGAGCAAGGCTT...CTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp AGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGGCATACATGGTGGTCAGGTaGAAGAGCACGCTCTCGTGC +
Preference number: 5 (lower is better)
Translates to: SSFAYGAGVEPMPSDREAYMVVR*KSTLSC
Trigger: GCACGAGAGCGTGCTCTTCAACCTGACCACCATGTA...TGCCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GTGACTTTGGCACCCTGCTTGACTCTGTATACAGCCCCTACCACTTGCTTGCCAAGGGGATGCATGTGCTaGCTGCAGACGGTCTTGACC +
Preference number: 5 (lower is better)
Translates to: VTLAPCLTLYTAPTTCLPRGCMC*LQTVLT
Trigger: GGTCAAGACCGTCTGCAGCAAGCACATGCATCCCCT...TGGCAAGCAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGTGCCAAAGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS TCA 90 bp TGTGGCGAAGGGGTCATCACTTCCAGCAAACACAGCCTGGATCTGTaGAAATGGCTTTGGAGATTCAGGGACATCCAGAGGGGCCCGAGA +
Preference number: 5 (lower is better)
Translates to: CGEGVITSSKHSLDL*KWLWRFRDIQRGPR
Trigger: TCTCGGGCCCCTCTGGATGTCCCTGAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTGTTTGCTGGAAGTGATGACCCCTTCGCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 90 bp CTCAGGGCTGTGGCGAAGGGGTCATCACTTCCAGCAAACACAGCCTaGATCTGTGAAAATGGCTTTGGAGATTCAGGGACATCCAGAGGG +
Preference number: 5 (lower is better)
Translates to: LRAVAKGSSLPANTA*ICENGFGDSGTSRG
Trigger: CCCTCTGGATGTCCCTGAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTGTTTGCTGGAAGTGATGACCCCTTCGCCACAGCCCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp AGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGGCAGTGTCCACCACTTCTTaGTCTGTGCTACTGGGCAGT +
Preference number: 5 (lower is better)
Translates to: SSFAYGAGVEPMPSDREAVSTTS*SVLLGS
Trigger: ACTGCCCAGTAGCACAGACAAAGAAGTGGTGGACAC...TGCCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp CCCATGCCCTCAGATCGTGAGGCACAAATGATGCTCCGCTGCATCCCACAGCCGTCTGTGAAAATGGCTTaGGAGATTCAGGGACATCCA +
Preference number: 5 (lower is better)
Translates to: PMPSDREAQMMLRCIPQPSVKMA*EIQGHP
Trigger: TGGATGTCCCTGAATCTCCAAAGCCATTTTCACAGA...CGGCTGTGGGATGCAGCGGAGCATCATTTGTGCCTCACGATCTGAGGGCATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp AGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGGCATCAGGAGCAGACAGTTaGCCATGGAGTACAGCACAC +
Preference number: 5 (lower is better)
Translates to: SSFAYGAGVEPMPSDREASGADS*PWSTAH
Trigger: GTGTGCTGTACTCCATGGCAAACTGTCTGCTCCTGA...TGCCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GAAGAGCCAGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCAAGCTGTCCCCTTCTTaGCTAGCAACGGCCTCAAGT +
Preference number: 5 (lower is better)
Translates to: EEPAVLLMELGWNPCPQIKLSPS*LATASS
Trigger: ACTTGAGGCCGTTGCTAGCAAAGAAGGGGACAGCTT...GATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCTGGCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 90 bp GTTCTCCTTGTCTATGAACACAGTGCCATACTGCTGGGTTGCTACTaGCATCAGGACTTCTCTGGTCGCCTGACTGGGAAGCCATGCGTC +
Preference number: 5 (lower is better)
Translates to: VLLVYEHSAILLGCY*HQDFSGRLTGKPCV
Trigger: GACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGTCCTGATGTCAGTAGCAACCCAGCAGTATGGCACTGTGTTCATAGACAAGGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 90 bp TCCCCTTCTTTGCTAGCAACGGCCTCAAGTAGGCTCTGCTTCTTTTaGATGCTCCTTGAGGACTCCAGCTCGTACATGGTGGTCAGGTTG +
Preference number: 5 (lower is better)
Translates to: SPSLLATASSRLCFF*MLLEDSSSYMVVRL
Trigger: CAACCTGACCACCATGTACGAGCTGGAGTCCTCAAGGAGCATGCAAAAGAAGCAGAGCCTACTTGAGGCCGTTGCTAGCAAAGAAGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp AGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGGCATTAAGACCTGTCTCTTaGCTGCAGCCTTCTCACCCA +
Preference number: 5 (lower is better)
Translates to: SSFAYGAGVEPMPSDREALRPVS*LQPSHP
Trigger: TGGGTGAGAAGGCTGCAGCAAAGAGACAGGTCTTAA...TGCCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 90 bp TTGAAGCTGTCCCCTTCTTTGCTAGCAACGGCCTCAAGTAGGCTCTaGTTCTTTTGCATGCTCCTTGAGGACTCCAGCTCGTACATGGTG +
Preference number: 5 (lower is better)
Translates to: LKLSPSLLATASSRL*FFCMLLEDSSSYMV
Trigger: CACCATGTACGAGCTGGAGTCCTCAAGGAGCATGCAAAAGAAGCAGAGCCTACTTGAGGCCGTTGCTAGCAAAGAAGGGGACAGCTTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp ATGTACACTTCGGTGTTTCCACCCAGTTTGTGTGGCTCCAGATGTCCTCCTGTCAAGGAGATGCCTCACTaGGGCTCTGCTCACCATCTT +
Preference number: 5 (lower is better)
Translates to: MYTSVFPPSLCGSRCPPVKEMPH*GSAHHL
Trigger: AAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCTT...GACAGGAGGACATCTGGAGCCACACAAACTGGGTGGAAACACCGAAGTGTACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp ATGCCATGCATATGGCTCACCTTCACCAACAGGCAGTATTGTGCAACTGCATGGATTCTTGCCATAGCCTaGTCCGTGGGCTGTGAGCAG +
Preference number: 5 (lower is better)
Translates to: MPCIWLTFTNRQYCATAWILAIA*SVGCEQ
Trigger: CTGCTCACAGCCCACGGACAAGGCTATGGCAAGAAT...CCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCATATGCATGGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CCA 90 bp TGGGCTCGTTCTCTTCAGATGCAAACTCATCTCCACCAAGATCAATaGTCTCTTCATGGTACAATGGCTGGCTCTCCTCCTCCCGAGACA +
Preference number: 5 (lower is better)
Translates to: WARSLQMQTHLHQDQ*SLHGTMAGSPPPET
Trigger: TGTCTCGGGAGGAGGAGAGCCAGCCATTGTACCATGAAGAGACCATTGATCTTGGTGGAGATGAGTTTGCATCTGAAGAGAACGAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp AGCAGTTTTGCTTATGGAGCTGGGGTGGAACCCATGCCCTCAGATCGTGAGGCATCTGTGAAAATGGCTTaGGAGATTCAGGGACATCCA +
Preference number: 5 (lower is better)
Translates to: SSFAYGAGVEPMPSDREASVKMA*EIQGHP
Trigger: TGGATGTCCCTGAATCTCCAAAGCCATTTTCACAGA...TGCCTCACGATCTGAGGGCATGGGTTCCACCCCAGCTCCATAAGCAAAACTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 90 bp TGCTGCAGCCTTCTCACCCAGGAAGCGAAGCATCAAGTCTTTAACTaGATCTCCCTGAATGTTGTCAAACTTGAGGCCAGGCATAGTGAG +
Preference number: 5 (lower is better)
Translates to: CCSLLTQEAKHQVFN*ISLNVVKLEARHSE
Trigger: CTCACTATGCCTGGCCTCAAGTTTGACAACATTCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTCCTGGGTGAGAAGGCTGCAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp ATGTACACTTCGGTGTTTCCACCCAGTTTGTGTGGCTCCAGATGTCCTCCTGTCTCACATCTTCCTGTGTaGAGTCTTCCTTCAGAGAGG +
Preference number: 5 (lower is better)
Translates to: MYTSVFPPSLCGSRCPPVSHLPV*SLPSER
Trigger: CCTCTCTGAAGGAAGACTCAACACAGGAAGATGTGA...GACAGGAGGACATCTGGAGCCACACAAACTGGGTGGAAACACCGAAGTGTACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp ATGCCATGCATATGGCTCACCTTCACCAACAGGCAGTATTGTGCAACTGCATGGTCACATCTTCCTGTGTaGAGTCTTCCTTCAGAGAGG +
Preference number: 5 (lower is better)
Translates to: MPCIWLTFTNRQYCATAWSHLPV*SLPSER
Trigger: CCTCTCTGAAGGAAGACTCAACACAGGAAGATGTGA...CCATGCAGTTGCACAATACTGCCTGTTGGTGAAGGTGAGCCATATGCATGGCAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCCCGATCTATCCATCCTaGTGGAGTAAGATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: GNGRPFPGPLHFAKWKKRPIYPS*WSKMGW
Trigger: CCAGCCCATCTTACTCCACAAGGATGGATAGATCGG...GCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp TGTACACTTCGGTGTTTCCACCCAGTTTGTGTGGCTCCAGATGTCCTCCTGTCTTCTGTGAAAATGGCTTaGGAGATTCAGGGACATCCA +
Preference number: 5 (lower is better)
Translates to: CTLRCFHPVCVAPDVLLSSVKMA*EIQGHP
Trigger: TGGATGTCCCTGAATCTCCAAAGCCATTTTCACAGA...AGACAGGAGGACATCTGGAGCCACACAAACTGGGTGGAAACACCGAAGTGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAATACATGGTGGTCAGGTaGAAGAGCACGCTCTCGTGC +
Preference number: 5 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQYMVVR*KSTLSC
Trigger: GCACGAGAGCGTGCTCTTCAACCTGACCACCATGTA...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 90 bp AGCACACTTTCCATCATGTGCTCATTAAGCTTATCTCCGAAGTTGTaGGACCCTTCCGATGTGGGCTCGTTCTCTTCAGATGCAAACTCA +
Preference number: 5 (lower is better)
Translates to: STLSIMCSLSLSPKL*DPSDVGSFSSDANS
Trigger: TGAGTTTGCATCTGAAGAGAACGAGCCCACATCGGAAGGGTCTCACAACTTCGGAGATAAGCTTAATGAGCACATGATGGAAAGTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp AAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAAGGAGATGCCTCACTaGGGCTCTGCTCACCATCTT +
Preference number: 5 (lower is better)
Translates to: KLGTEDHFQVLYILQSGKKEMPH*GSAHHL
Trigger: AAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCTT...TTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GAATTAGGAAAGCTGGGAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAAGGAGATGCCTCACTaGGGCTCTGCTCACCATCTT +
Preference number: 5 (lower is better)
Translates to: ELGKLGTEDHFQVLYILQKEMPH*GSAHHL
Trigger: AAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCTT...TTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTCCCAGCTTTCCTAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATAATTCTTGCCATAGCCTaGTCCGTGGGCTGTGAGCAG +
Preference number: 5 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIILAIA*SVGCEQ
Trigger: CTGCTCACAGCCCACGGACAAGGCTATGGCAAGAAT...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCCGATCTATCCATCCTaGTGGAGTAAGATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: EDHFQVLYILQSGKSAYKPIYPS*WSKMGW
Trigger: CCAGCCCATCTTACTCCACAAGGATGGATAGATCGG...CTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp AACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATAAAGCCTTGCTCCAAGTaGGCCAAGATCTTGCTGCAG +
Preference number: 5 (lower is better)
Translates to: NGRPFPGPLHFAKWKKRIKPCSK*AKILLQ
Trigger: CTGCAGCAAGATCTTGGCCAACTTGGAGCAAGGCTT...TATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCCAGCTGAACAGAGGCTaGCCTGCTTTCCTGGGTGAC +
Preference number: 5 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCQLNRG*PAFLGD
Trigger: GTCACCCAGGAAAGCAGGCAAGCCTCTGTTCAGCTG...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 90 bp ACTGCATTTGTTGGGTCCATTCTCAAAATCTCTGTGAAGAACTTGTaGGCTTCTGCGAAGTTATTCTGGCCAAGGTACAGAAAGGCTCTG +
Preference number: 5 (lower is better)
Translates to: TAFVGSILKISVKNL*ASAKLFWPRYRKAL
Trigger: CAGAGCCTTTCTGTACCTTGGCCAGAATAACTTCGCAGAAGCTCACAAGTTCTTCACAGAGATTTTGAGAATGGACCCAACAAATGCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 90 bp TGTTGTTGGCCACTGCATTTGTTGGGTCCATTCTCAAAATCTCTGTaGAGAACTTGTGAGCTTCTGCGAAGTTATTCTGGCCAAGGTACA +
Preference number: 5 (lower is better)
Translates to: CCWPLHLLGPFSKSL*RTCELLRSYSGQGT
Trigger: TGTACCTTGGCCAGAATAACTTCGCAGAAGCTCACAAGTTCTTCACAGAGATTTTGAGAATGGACCCAACAAATGCAGTGGCCAACAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GAACGGAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATTCACATCTTCCTGTGTaGAGTCTTCCTTCAGAGAGG +
Preference number: 5 (lower is better)
Translates to: ERKTISRSFTFCKVEKAHSHLPV*SLPSER
Trigger: CCTCTCTGAAGGAAGACTCAACACAGGAAGATGTGA...ATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTCCGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GAGCTGAATAATCAAAGCAATACTTTTGTTTGGGATATGGAGGGAGGAAGACAATCAGGAGCAGACAGTTaGCCATGGAGTACAGCACAC +
Preference number: 5 (lower is better)
Translates to: ELNNQSNTFVWDMEGGRQSGADS*PWSTAH
Trigger: GTGTGCTGTACTCCATGGCAAACTGTCTGCTCCTGA...TTGTCTTCCTCCCTCCATATCCCAAACAAAAGTATTGCTTTGATTATTCAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS-3UTR CAA 90 bp GAAGACCATTTCCAGGTCCTTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGTCTTTTGCATGCTCCTaGAGGACTCCAGCTCGTACA +
Preference number: 5 (lower is better)
Translates to: EDHFQVLYILQSGKSAYKSFACS*RTPART
Trigger: TGTACGAGCTGGAGTCCTCAAGGAGCATGCAAAAGA...CTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAAGGACCTGGAAATGGTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 90 bp AGACAGCTTTTCTGGAACTGGGGAACCTGCATTGGGATTACTGACTaGAATGAAAGTAGAAGTTGTGAAGGAATCAAAGAAGTCAGAGGC +
Preference number: 5 (lower is better)
Translates to: RQLFWNWGTCIGITD*NESRSCEGIKEVRG
Trigger: GCCTCTGACTTCTTTGATTCCTTCACAACTTCTACTTTCATTTCAGTCAGTAATCCCAATGCAGGTTCCCCAGTTCCAGAAAAGCTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS-3UTR CAA 90 bp TTTACATTTTGCAAAGTGGAAAAAGCGCATACAAGCGTTAAGCAATTCTCTTGCAAGTTGGCCAAGATCTaGCTGCAGACGGTCTTGACC +
Preference number: 5 (lower is better)
Translates to: FTFCKVEKAHTSVKQFSCKLAKI*LQTVLT
Trigger: GGTCAAGACCGTCTGCAGCAAGATCTTGGCCAACTT...GCAAGAGAATTGCTTAACGCTTGTATGCGCTTTTTCCACTTTGCAAAATGTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 72 bp GCAGCCCATTCTTGCCATAGCCTTGTCCGTGGGCTGTaGGCAGGCGTCCACACAGGTCGACTGCTGCCCTCC +
Preference number: 6 (lower is better)
Translates to: AAHSCHSLVRGL*AGVHTGRLLPS
Trigger: GGAGGGCAGCAGTCGACCTGTGTGGACGCCTGCTCACAGCCCACGGACAAGGCTATGGCAAGAATGGGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp AGAAACAGGTGTGGCTGGGAGGGAGTGGCGGTAGCCTaGCTGAAGATGGTGCAGACGGGCAAGGGCTCGTCT +
Preference number: 6 (lower is better)
Translates to: RNRCGWEGVAVA*LKMVQTGKGSS
Trigger: AGACGAGCCCTTGCCCGTCTGCACCATCTTCAGCCAGGCTACCGCCACTCCCTCCCAGCCACACCTGTTTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 72 bp ACGGCCCAGACGAGACCTCCACAGCTGAACAGAGGCTaGCCTGCTTTCCTGGGTGACGCTGCTCAGACCACC +
Preference number: 6 (lower is better)
Translates to: TAQTRPPQLNRG*PAFLGDAAQTT
Trigger: GGTGGTCTGAGCAGCGTCACCCAGGAAAGCAGGCAAGCCTCTGTTCAGCTGTGGAGGTCTCGTCTGGGCCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 72 bp GTGGGCTGTGAGCAGGCGTCCACACAGGTCGACTGCTaGCCTCCAGTTCCTGCAGCTAATGAGCTGCTTCAG +
Preference number: 6 (lower is better)
Translates to: VGCEQASTQVDC*PPVPAANELLQ
Trigger: CTGAAGCAGCTCATTAGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGACGCCTGCTCACAGCCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 72 bp TCCGTGGGCTGTGAGCAGGCGTCCACACAGGTCGACTaGTGCCCTCCAGTTCCTGCAGCTAATGAGCTGCTT +
Preference number: 6 (lower is better)
Translates to: SVGCEQASTQVD*CPPVPAANELL
Trigger: AAGCAGCTCATTAGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGACGCCTGCTCACAGCCCACGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 90 bp GTACAGCACACGGCCCAGACGAGACCTCCACAGCTGAACAGAGGCTaGCCTGCTTTCCTGGGTGACGCTGCTCAGACCACCATCTTCAGC +
Preference number: 6 (lower is better)
Translates to: VQHTAQTRPPQLNRG*PAFLGDAAQTTIFS
Trigger: GCTGAAGATGGTGGTCTGAGCAGCGTCACCCAGGAAAGCAGGCAAGCCTCTGTTCAGCTGTGGAGGTCTCGTCTGGGCCGTGTGCTGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 72 bp GTCGGAGGGGATGCATGTGCTTGCTGCAGACGGTCTTaGCCCTGTGTAATCGGTCCAGGGACTCCTGTGGGT +
Preference number: 6 (lower is better)
Translates to: VGGDACACCRRS*PCVIGPGTPVG
Trigger: ACCCACAGGAGTCCCTGGACCGATTACACAGGGTCAAGACCGTCTGCAGCAAGCACATGCATCCCCTCCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS CCA 72 bp AGACGGGCAAGGGCTCGTCTTTGGAGGAGGACTGATTaGAGGACACTTCTGAGGTCTGCTCTTCTCGGGGCG +
Preference number: 6 (lower is better)
Translates to: RRARARLWRRTD*RTLLRSALLGA
Trigger: CGCCCCGAGAAGAGCAGACCTCAGAAGTGTCCTCCAATCAGTCCTCCTCCAAAGACGAGCCCTTGCCCGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp TGGGACTCGAAGCCATCCTGTAGAAACAGGTGTGGCTaGGAGGGAGTGGCGGTAGCCTGGCTGAAGATGGTG +
Preference number: 6 (lower is better)
Translates to: WDSKPSCRNRCG*EGVAVAWLKMV
Trigger: CACCATCTTCAGCCAGGCTACCGCCACTCCCTCCCAGCCACACCTGTTTCTACAGGATGGCTTCGAGTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 72 bp AGTCGGAGGGGATGCATGTGCTTGCTGCAGACGGTCTaGACCCTGTGTAATCGGTCCAGGGACTCCTGTGGG +
Preference number: 6 (lower is better)
Translates to: SRRGCMCLLQTV*TLCNRSRDSCG
Trigger: CCCACAGGAGTCCCTGGACCGATTACACAGGGTCAAGACCGTCTGCAGCAAGCACATGCATCCCCTCCGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170994.3
CDS TCA 72 bp CTCGTCTTTGGAGGAGGACTGATTGGAGGACACTTCTaGGGTCTGCTCTTCTCGGGGCGCGAGGCTGTCCTT +
Preference number: 6 (lower is better)
Translates to: LVFGGGLIGGHF*GLLFSGREAVL
Trigger: AAGGACAGCCTCGCGCCCCGAGAAGAGCAGACCTCAGAAGTGTCCTCCAATCAGTCCTCCTCCAAAGACGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 72 bp GTGCAGACGGGCAAGGGCTCGTCTTTGGAGGAGGACTaGTTGGAGGACACTTCTGAGGTCTGCTCTTCTCGG +
Preference number: 6 (lower is better)
Translates to: VQTGKGSSLEED*LEDTSEVCSSR
Trigger: CCGAGAAGAGCAGACCTCAGAAGTGTCCTCCAATCAGTCCTCCTCCAAAGACGAGCCCTTGCCCGTCTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 72 bp TCCTTGAGGACTCCAGCTCGTACATGGTGGTCAGGTTaGAGAGCACGCTCTCGTGCAGGTAGTGCCTGGGGT +
Preference number: 6 (lower is better)
Translates to: SLRTPARTWWSG*RARSRAGSAWG
Trigger: ACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 72 bp GAAGCCATGCGTCATTCCTCCGGTCCATCTCACTCATaGTCAGGGCTGTGGCGAAGGGGTCATCACTTCCAG +
Preference number: 6 (lower is better)
Translates to: EAMRHSSGPSHS*SGLWRRGHHFQ
Trigger: CTGGAAGTGATGACCCCTTCGCCACAGCCCTGAGCATGAGTGAGATGGACCGGAGGAATGACGCATGGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp CGAGACATAGGCTCCGGGATGTTTTCAGGACCTGCCTaGGCTGAAGGAGATGCCTCACTTGGGCTCTGCTCA +
Preference number: 6 (lower is better)
Translates to: RDIGSGMFSGPA*AEGDASLGLCS
Trigger: TGAGCAGAGCCCAAGTGAGGCATCTCCTTCAGCCCAGGCAGGTCCTGAAAACATCCCGGAGCCTATGTCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 90 bp AGGCATCCACAGCCAGCACATAGTCCTTCATCAGGAGCAGACAGTTaGCCATGGAGTACAGCACACGGCCCAGACGAGACCTCCACAGCT +
Preference number: 6 (lower is better)
Translates to: RHPQPAHSPSSGADS*PWSTAHGPDETSTA
Trigger: AGCTGTGGAGGTCTCGTCTGGGCCGTGTGCTGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGACTATGTGCTGGCTGTGGATGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 72 bp TGGGTTGCTACTGACATCAGGACTTCTCTGGTCGCCTaGCTGGGAAGCCATGCGTCATTCCTCCGGTCCATC +
Preference number: 6 (lower is better)
Translates to: WVATDIRTSLVA*LGSHASFLRSI
Trigger: GATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGTCCTGATGTCAGTAGCAACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 72 bp GCTCCAAGTTGGCCAAGATCTTGCTGCAGACGGTCTTaGCCCTGTGTAATCGGTCCAGGGACTCCTGTGGGT +
Preference number: 6 (lower is better)
Translates to: APSWPRSCCRRS*PCVIGPGTPVG
Trigger: ACCCACAGGAGTCCCTGGACCGATTACACAGGGTCAAGACCGTCTGCAGCAAGATCTTGGCCAACTTGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 72 bp CATCAGGACTTCTCTGGTCGCCTGACTGGGAAGCCATaGGTCATTCCTCCGGTCCATCTCACTCATGCTCAG +
Preference number: 6 (lower is better)
Translates to: HQDFSGRLTGKP*VIPPVHLTHAQ
Trigger: CTGAGCATGAGTGAGATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGTCCTGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 72 bp CGGTCCAGGGACTCCTGTGGGTTCCCCAGATACTGCTaGAGTTCTGCATGCAGAATACGCATCGAAAAGGGG +
Preference number: 6 (lower is better)
Translates to: RSRDSCGFPRYC*SSACRIRIEKG
Trigger: CCCCTTTTCGATGCGTATTCTGCATGCAGAACTGCAGCAGTATCTGGGGAACCCACAGGAGTCCCTGGACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp CTGGAGGAGAATGCGGCCGATTCCACTCAGCAGCTGTaGCTCCTGCTCCGGGTAGTACTTGATTACTGTGAG +
Preference number: 6 (lower is better)
Translates to: LEENAADSTQQL*LLLRVVLDYCE
Trigger: CTCACAGTAATCAAGTACTACCCGGAGCAGGAGCCACAGCTGCTGAGTGGAATCGGCCGCATTCTCCTCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CAA 72 bp TGTAGACAGCCGAGGTCGCCAACGTCCCCCTCGCTGTaGTTAGGAGAGTCGGAGATGAGCACACTTTCCATC +
Preference number: 6 (lower is better)
Translates to: CRQPRSPTSPSL*LGESEMSTLSI
Trigger: GATGGAAAGTGTGCTCATCTCCGACTCTCCTAACAACAGCGAGGGGGACGTTGGCGACCTCGGCTGTCTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 72 bp TGCTCCAAGTTGGCCAAGATCTTGCTGCAGACGGTCTaGACCCTGTGTAATCGGTCCAGGGACTCCTGTGGG +
Preference number: 6 (lower is better)
Translates to: CSKLAKILLQTV*TLCNRSRDSCG
Trigger: CCCACAGGAGTCCCTGGACCGATTACACAGGGTCAAGACCGTCTGCAGCAAGATCTTGGCCAACTTGGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CAA 72 bp CAGCCAGCACATAGTCCTTCATCAGGAGCAGACAGTTaGCCATGGAGTACAGCACACGGCCCAGACGAGACC +
Preference number: 6 (lower is better)
Translates to: QPAHSPSSGADS*PWSTAHGPDET
Trigger: GGTCTCGTCTGGGCCGTGTGCTGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGACTATGTGCTGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS TCA 72 bp GAGGAGGGGTCTTGGCTGACGTCTCACTGGTGCTACTaGAACTGGGTGATTTCACCATCTGGGACTCGAAGC +
Preference number: 6 (lower is better)
Translates to: EEGSWLTSHWCY*NWVISPSGTRS
Trigger: GCTTCGAGTCCCAGATGGTGAAATCACCCAGTTTCAGTAGCACCAGTGAGACGTCAGCCAAGACCCCTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp CCACCAAGATCAATGGTCTCTTCATGGTACAATGGCTaGCTCTCCTCCTCCCGAGACATAGGCTCCGGGATG +
Preference number: 6 (lower is better)
Translates to: PPRSMVSSWYNG*LSSSRDIGSGM
Trigger: CATCCCGGAGCCTATGTCTCGGGAGGAGGAGAGCCAGCCATTGTACCATGAAGAGACCATTGATCTTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp TTGCTACTGACATCAGGACTTCTCTGGTCGCCTGACTaGGAAGCCATGCGTCATTCCTCCGGTCCATCTCAC +
Preference number: 6 (lower is better)
Translates to: LLLTSGLLWSPD*EAMRHSSGPSH
Trigger: GTGAGATGGACCGGAGGAATGACGCATGGCTTCCCAGTCAGGCGACCAGAGAAGTCCTGATGTCAGTAGCAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 90 bp CATCCAGAGGGGCCCGAGAAACACCTGATTCCGATCTATCCATCCTaGTGGAGTAAGATGGGCTGGTGGAATCCGGGGACTTCTCTCCTA +
Preference number: 6 (lower is better)
Translates to: HPEGPEKHLIPIYPS*WSKMGWWNPGTSLL
Trigger: TAGGAGAGAAGTCCCCGGATTCCACCAGCCCATCTTACTCCACAAGGATGGATAGATCGGAATCAGGTGTTTCTCGGGCCCCTCTGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 90 bp AGACCACCATCTTCAGCTAAGCCTTGCTCCAAGTTGGCCAAGATCTaGCTGCAGACGGTCTTGACCCTGTGTAATCGGTCCAGGGACTCC +
Preference number: 6 (lower is better)
Translates to: RPPSSAKPCSKLAKI*LQTVLTLCNRSRDS
Trigger: GGAGTCCCTGGACCGATTACACAGGGTCAAGACCGTCTGCAGCAAGATCTTGGCCAACTTGGAGCAAGGCTTAGCTGAAGATGGTGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CAA 90 bp GTGACGCTGCTCAGACCACCATCTTCAGCTAAGCCTTGCTCCAAGTaGGCCAAGATCTTGCTGCAGACGGTCTTGACCCTGTGTAATCGG +
Preference number: 6 (lower is better)
Translates to: VTLLRPPSSAKPCSK*AKILLQTVLTLCNR
Trigger: CCGATTACACAGGGTCAAGACCGTCTGCAGCAAGATCTTGGCCAACTTGGAGCAAGGCTTAGCTGAAGATGGTGGTCTGAGCAGCGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 72 bp TGCCATTACTCAGAGTGTCCACCACTTCTTTGTCTGTaGTACTGGGCAGTCGGTGATCAGTGGCACCTCTGG +
Preference number: 6 (lower is better)
Translates to: CHYSECPPLLCL*YWAVGDQWHLW
Trigger: CCAGAGGTGCCACTGATCACCGACTGCCCAGTAGCACAGACAAAGAAGTGGTGGACACTCTGAGTAATGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 72 bp CGACTTCCTCCGTGGCAGCATTCTCCAGTGCAGGCATaGTCGTCACATCTTCCTGTGTTGAGTCTTCCTTCA +
Preference number: 6 (lower is better)
Translates to: RLPPWQHSPVQA*SSHLPVLSLPS
Trigger: TGAAGGAAGACTCAACACAGGAAGATGTGACGAGCATGCCTGCACTGGAGAATGCTGCCACGGAGGAAGTCG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 72 bp TCCCCTTCTTTGCTAGCAACGGCCTCAAGTAGGCTCTaGTTCTTTTGCATGCTCCTTGAGGACTCCAGCTCG +
Preference number: 6 (lower is better)
Translates to: SPSLLATASSRL*FFCMLLEDSSS
Trigger: CGAGCTGGAGTCCTCAAGGAGCATGCAAAAGAAGCAGAGCCTACTTGAGGCCGTTGCTAGCAAAGAAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CCA 72 bp ATCTCCACCAAGATCAATGGTCTCTTCATGGTACAATaGCTGGCTCTCCTCCTCCCGAGACATAGGCTCCGG +
Preference number: 6 (lower is better)
Translates to: ISTKINGLFMVQ*LALLLPRHRLR
Trigger: CCGGAGCCTATGTCTCGGGAGGAGGAGAGCCAGCCATTGTACCATGAAGAGACCATTGATCTTGGTGGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp ATTCCGATCTATCCATCCTTGTGGAGTAAGATGGGCTaGTGGAATCCGGGGACTTCTCTCCTACAGGGGCAG +
Preference number: 6 (lower is better)
Translates to: IPIYPSLWSKMG*WNPGTSLLQGQ
Trigger: CTGCCCCTGTAGGAGAGAAGTCCCCGGATTCCACCAGCCCATCTTACTCCACAAGGATGGATAGATCGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 72 bp CTCAGACCACCATCTTCAGCTAAGCCTTGCTCCAAGTaGGCCAAGATCTTGCTGCAGACGGTCTTGACCCTG +
Preference number: 6 (lower is better)
Translates to: LRPPSSAKPCSK*AKILLQTVLTL
Trigger: CAGGGTCAAGACCGTCTGCAGCAAGATCTTGGCCAACTTGGAGCAAGGCTTAGCTGAAGATGGTGGTCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 72 bp TTGCTAGCAACGGCCTCAAGTAGGCTCTGCTTCTTTTaGATGCTCCTTGAGGACTCCAGCTCGTACATGGTG +
Preference number: 6 (lower is better)
Translates to: LLATASSRLCFF*MLLEDSSSYMV
Trigger: CACCATGTACGAGCTGGAGTCCTCAAGGAGCATGCAAAAGAAGCAGAGCCTACTTGAGGCCGTTGCTAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CAA 72 bp TCTCCAGTGCAGGCATGCTCGTCACATCTTCCTGTGTaGAGTCTTCCTTCAGAGAGGCTCTGCTATCAGGTG +
Preference number: 6 (lower is better)
Translates to: SPVQACSSHLPV*SLPSERLCYQV
Trigger: CACCTGATAGCAGAGCCTCTCTGAAGGAAGACTCAACACAGGAAGATGTGACGAGCATGCCTGCACTGGAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 72 bp TCTTCAGCTAAGCCTTGCTCCAAGTTGGCCAAGATCTaGCTGCAGACGGTCTTGACCCTGTGTAATCGGTCC +
Preference number: 6 (lower is better)
Translates to: SSAKPCSKLAKI*LQTVLTLCNRS
Trigger: GGACCGATTACACAGGGTCAAGACCGTCTGCAGCAAGATCTTGGCCAACTTGGAGCAAGGCTTAGCTGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CAA 90 bp TGGCAGCATTCTCCAGTGCAGGCATGCTCGTCACATCTTCCTGTGTaGAGTCTTCCTTCAGAGAGGCTCTGCTATCAGGTGTCATGTCTG +
Preference number: 6 (lower is better)
Translates to: WQHSPVQACSSHLPV*SLPSERLCYQVSCL
Trigger: CAGACATGACACCTGATAGCAGAGCCTCTCTGAAGGAAGACTCAACACAGGAAGATGTGACGAGCATGCCTGCACTGGAGAATGCTGCCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 72 bp TTCCTTCAGAGAGGCTCTGCTATCAGGTGTCATGTCTaGGATGTCTCTGGGAGTGTCGTCTCCATCGGTTTC +
Preference number: 6 (lower is better)
Translates to: FLQRGSAIRCHV*DVSGSVVSIGF
Trigger: GAAACCGATGGAGACGACACTCCCAGAGACATCTCAGACATGACACCTGATAGCAGAGCCTCTCTGAAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 72 bp GGGGTCATCACTTCCAGCAAACACAGCCTGGATCTGTaGAAATGGCTTTGGAGATTCAGGGACATCCAGAGG +
Preference number: 6 (lower is better)
Translates to: GVITSSKHSLDL*KWLWRFRDIQR
Trigger: CCTCTGGATGTCCCTGAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTGTTTGCTGGAAGTGATGACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 72 bp CTGCAGCTAATGAGCTGCTTCAGCCCCACAAAGGACTaGTCCACTGAGCTGGCATTTAAGACCTGTCTCTTT +
Preference number: 6 (lower is better)
Translates to: LQLMSCFSPTKD*STELAFKTCLF
Trigger: AAAGAGACAGGTCTTAAATGCCAGCTCAGTGGAGCAGTCCTTTGTGGGGCTGAAGCAGCTCATTAGCTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp GTGGCGAAGGGGTCATCACTTCCAGCAAACACAGCCTaGATCTGTGAAAATGGCTTTGGAGATTCAGGGACA +
Preference number: 6 (lower is better)
Translates to: VAKGSSLPANTA*ICENGFGDSGT
Trigger: TGTCCCTGAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTGTTTGCTGGAAGTGATGACCCCTTCGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp AGGTTCTCCTTGTCTATGAACACAGTGCCATACTGCTaGGTTGCTACTGACATCAGGACTTCTCTGGTCGCC +
Preference number: 6 (lower is better)
Translates to: RFSLSMNTVPYC*VATDIRTSLVA
Trigger: GGCGACCAGAGAAGTCCTGATGTCAGTAGCAACCCAGCAGTATGGCACTGTGTTCATAGACAAGGAGAACCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 72 bp TTCCAGCAAACACAGCCTGGATCTGTGAAAATGGCTTaGGAGATTCAGGGACATCCAGAGGGGCCCGAGAAA +
Preference number: 6 (lower is better)
Translates to: FQQTQPGSVKMA*EIQGHPEGPEK
Trigger: TTTCTCGGGCCCCTCTGGATGTCCCTGAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTGTTTGCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CAA 72 bp AGCTTCAGGCACTGTGTGTTGAAGCTGTCCCCTTCTTaGCTAGCAACGGCCTCAAGTAGGCTCTGCTTCTTT +
Preference number: 6 (lower is better)
Translates to: SFRHCVLKLSPS*LATASSRLCFF
Trigger: AAAGAAGCAGAGCCTACTTGAGGCCGTTGCTAGCAAAGAAGGGGACAGCTTCAACACACAGTGCCTGAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 72 bp GTGAGACCCTTCCGATGTGGGCTCGTTCTCTTCAGATaGAAACTCATCTCCACCAAGATCAATGGTCTCTTC +
Preference number: 6 (lower is better)
Translates to: VRPFRCGLVLFR*KLISTKINGLF
Trigger: GAAGAGACCATTGATCTTGGTGGAGATGAGTTTGCATCTGAAGAGAACGAGCCCACATCGGAAGGGTCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 72 bp AGATGTCTCTGGGAGTGTCGTCTCCATCGGTTTCACTaGCATTACTCAGAGTGTCCACCACTTCTTTGTCTG +
Preference number: 6 (lower is better)
Translates to: RCLWECRLHRFH*HYSECPPLLCL
Trigger: CAGACAAAGAAGTGGTGGACACTCTGAGTAATGGCAGTGAAACCGATGGAGACGACACTCCCAGAGACATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS GCA 72 bp GTGAGGTTCTCCTTGTCTATGAACACAGTGCCATACTaGTGGGTTGCTACTGACATCAGGACTTCTCTGGTC +
Preference number: 6 (lower is better)
Translates to: VRFSLSMNTVPY*WVATDIRTSLV
Trigger: GACCAGAGAAGTCCTGATGTCAGTAGCAACCCAGCAGTATGGCACTGTGTTCATAGACAAGGAGAACCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 72 bp TCCATCATGTGCTCATTAAGCTTATCTCCGAAGTTGTaGGACCCTTCCGATGTGGGCTCGTTCTCTTCAGAT +
Preference number: 6 (lower is better)
Translates to: SIMCSLSLSPKL*DPSDVGSFSSD
Trigger: ATCTGAAGAGAACGAGCCCACATCGGAAGGGTCTCACAACTTCGGAGATAAGCTTAATGAGCACATGATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS TCA 72 bp AGGAAGCGAAGCATCAAGTCTTTAACTGCATCTCCCTaGATGTTGTCAAACTTGAGGCCAGGCATAGTGAGG +
Preference number: 6 (lower is better)
Translates to: RKRSIKSLTASP*MLSNLRPGIVR
Trigger: CCTCACTATGCCTGGCCTCAAGTTTGACAACATTCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3
CDS CCA 72 bp ACACACAGCAGCATTGTTGTTGGCCACTGCATTTGTTaGGTCCATTCTCAAAATCTCTGTGAAGAACTTGTG +
Preference number: 6 (lower is better)
Translates to: THSSIVVGHCIC*VHSQNLCEELV
Trigger: CACAAGTTCTTCACAGAGATTTTGAGAATGGACCCAACAAATGCAGTGGCCAACAACAATGCTGCTGTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS GCA 72 bp CATTCTCAAAATCTCTGTGAAGAACTTGTGAGCTTCTaGGAAGTTATTCTGGCCAAGGTACAGAAAGGCTCT +
Preference number: 6 (lower is better)
Translates to: HSQNLCEELVSF*EVILAKVQKGS
Trigger: AGAGCCTTTCTGTACCTTGGCCAGAATAACTTCGCAGAAGCTCACAAGTTCTTCACAGAGATTTTGAGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
CDS CAA 72 bp AGTGAAGACAGCTTTTCTGGAACTGGGGAACCTGCATaGGGATTACTGACTGAAATGAAAGTAGAAGTTGTG +
Preference number: 6 (lower is better)
Translates to: SEDSFSGTGEPA*GLLTEMKVEVV
Trigger: CACAACTTCTACTTTCATTTCAGTCAGTAATCCCAATGCAGGTTCCCCAGTTCCAGAAAAGCTGTCTTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020954.15
ENSMUST00000168129.10
ENSMUST00000170994.3