RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRAPPC10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000374

Ensembl transcript IDs: ENSMUST00000000384.8, ENSMUST00000217858.2, ENSMUST00000217980.2

Found 241 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTAGGAGAGGGCTGTGAGAAGAGACCAGACCCTCTTGGGAGGGTCTaGGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGATAAA +
Preference number: 1 (lower is better)
Translates to: LGEGCEKRPDPLGRV*GVGDTSTGHRARDK
Trigger: TTTATCCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTCTCACAGCCCTCTCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR GCA 90 bp CCTAAGCCATCTCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTaGAGTACCTTTCACGTGGCTTCTACAGATGGATCTTGTGATCTG +
Preference number: 1 (lower is better)
Translates to: PKPSPHHTSLLSGLL*STFHVASTDGSCDL
Trigger: CAGATCACAAGATCCATCTGTAGAAGCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGAGATGGCTTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR CCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGGAGACCAGACCCTCTTaGGAGGGTCTGAGGAGTTGG +
Preference number: 2 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRETRPS*EGLRSW
Trigger: CCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTC...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR TCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCCCTCTTGGGAGGGTCTaGGGAGTTGGGGATACCAGC +
Preference number: 2 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGPLGRV*GVGDTS
Trigger: GCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGG...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR TCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCAAGGGACTGGGCTTTGTaGGAAGGGCACACAGTGCCA +
Preference number: 2 (lower is better)
Translates to: LQALSPLRLIRAQERPLSRDWAL*EGHTVP
Trigger: TGGCACTGTGTGCCCTTCTCACAAAGCCCAGTCCCT...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR CCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGGATCTTGTGATCTGCTaGGCATCCCAAGGCACAGAA +
Preference number: 2 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRDLVIC*ASQGTE
Trigger: TTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATC...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR TCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGACTCCACTGCGCAGCTaGAGGACACTGTTCTCTGCT +
Preference number: 2 (lower is better)
Translates to: AEVLQALSPLRLIRAQERTPLRS*RTLFSA
Trigger: AGCAGAGAACAGTGTCCTTCAGCTGCGCAGTGGAGT...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR TCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGACTAGGAGAGGGCTGTaGGAAGAGACCAGACCCTCT +
Preference number: 2 (lower is better)
Translates to: AEVLQALSPLRLIRAQERTRRGL*EETRPS
Trigger: AGAGGGTCTGGTCTCTTCTCACAGCCCTCTCCTAGT...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR TCA 90 bp GGAGCAGGGCAGTGGAGCACTCTTCTCTTGAGTTGGAGTAGACCACGGCTCTGTTTGCTTCCACGTTGCTaGGCTGGAGGCTGTCTCCAT +
Preference number: 2 (lower is better)
Translates to: GAGQWSTLLLSWSRPRLCLLPRC*AGGCLH
Trigger: ATGGAGACAGCCTCCAGCTCAGCAACGTGGAAGCAA...ACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
3UTR-3UTR TCA 90 bp GCATCCAGCTCGTCGTACTGTACCAGGGCGTCCTCAAACTGCTGCAGCATCTCAGCTCCTCCTGAACCATaGAGTATTCGCAGAAGCTCC +
Preference number: 2 (lower is better)
Translates to: ASSSSYCTRASSNCCSISAPPEP*SIRRSS
Trigger: GGAGCTTCTGCGAATACTTCATGGTTCAGGAGGAGC...TGAGATGCTGCAGCAGTTTGAGGACGCCCTGGTACAGTACGACGAGCTGGATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
3UTR-3UTR GCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCAGAGAAGGGCACACAGTaGCATAAGAGGACTGCAGTC +
Preference number: 2 (lower is better)
Translates to: DQSTREAPLIFTPDGASSEKGTQ*HKRTAV
Trigger: GACTGCAGTCCTCTTATGGCACTGTGTGCCCTTCTC...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR CCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGGCAGTACCTTTCACGTaGCTTCTACAGATGGATCTT +
Preference number: 2 (lower is better)
Translates to: AEVLQALSPLRLIRAQERAVPFT*LLQMDL
Trigger: AAGATCCATCTGTAGAAGCCACGTGAAAGGTACTGC...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR CCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCATCTTCACTCCAGATaGAGCATCTTCAGTTCCAAG +
Preference number: 2 (lower is better)
Translates to: AEVLQALSPLRLIRAQERHLHSR*SIFSSK
Trigger: CTTGGAACTGAAGATGCTCCATCTGGAGTGAAGATG...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR CAA 90 bp GGCTCTGTCCTCTTTTCCCTCAAAGTCCGCATGTCATCCTCAAACTaGCCGAGGTTTTTGGTGAAAGACATGAGCAGCAGAGTCCTGAGT +
Preference number: 2 (lower is better)
Translates to: GSVLFSLKVRMSSSN*PRFLVKDMSSRVLS
Trigger: ACTCAGGACTCTGCTGCTCATGTCTTTCACCAAAAACCTCGGCAAGTTTGAGGATGACATGCGGACTTTGAGGGAAAAGAGGACAGAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
3UTR-3UTR TCA 90 bp CTGCTGCAGCATCTCAAAGACAAACGCAAGCTCCTCCTGAACCATGAAGTATTCGCATTCCAGGATTCCTaGGTTCGAGAAGAGTCCTTC +
Preference number: 2 (lower is better)
Translates to: LLQHLKDKRKLLLNHEVFAFQDS*VREESF
Trigger: GAAGGACTCTTCTCGAACTCAGGAATCCTGGAATGC...GAATACTTCATGGTTCAGGAGGAGCTTGCGTTTGTCTTTGAGATGCTGCAGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
3UTR-3UTR GCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTACTCTCTGGTCTTCTCTaGAGTACCTTTCACGTGGCT +
Preference number: 2 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLLSGLL*STFHVA
Trigger: AGCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAG...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR-3UTR CAA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGGGAGGGTCTGAGGAGTaGGGGATACCAGCACGGGGC +
Preference number: 3 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRGGSEE*GIPARG
Trigger: GCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCC...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR TCA 72 bp GGCTGTGAGAAGAGACCAGACCCTCTTGGGAGGGTCTaGGGAGTTGGGGATACCAGCACGGGGCACAGGGCC +
Preference number: 3 (lower is better)
Translates to: GCEKRPDPLGRV*GVGDTSTGHRA
Trigger: GGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTCTCACAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR TCA 72 bp CATGGCGGTGTATGGAAAGCCACTAGGAGAGGGCTGTaGGAAGAGACCAGACCCTCTTGGGAGGGTCTGAGG +
Preference number: 3 (lower is better)
Translates to: HGGVWKATRRGL*EETRPSWEGLR
Trigger: CCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTCTCACAGCCCTCTCCTAGTGGCTTTCCATACACCGCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR CCA 72 bp TCCGGAGCAGGGCAGTGGAGCACTCTTCTCTTGAGTTaGAGTAGACCACGGCTCTGTTCTCTGCCTGACACA +
Preference number: 3 (lower is better)
Translates to: SGAGQWSTLLLS*SRPRLCSLPDT
Trigger: TGTGTCAGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
3UTR GCA 72 bp TCCAGCTCGTCGTACTGTACCAGGGCGTCCTCAAACTaGTGCAGCATCTCAAAGACAAACGCAAGCTCCTCC +
Preference number: 3 (lower is better)
Translates to: SSSSYCTRASSN*CSISKTNASSS
Trigger: GGAGGAGCTTGCGTTTGTCTTTGAGATGCTGCAGCAGTTTGAGGACGCCCTGGTACAGTACGACGAGCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
3UTR GCA 72 bp CACGGCTCTGTTCTCTGCCTGACACAAGATGAGCATTaGTTCCACGTTGCTGAGCTGGAGGCTGTCTCCATT +
Preference number: 3 (lower is better)
Translates to: HGSVLCLTQDEH*FHVAELEAVSI
Trigger: AATGGAGACAGCCTCCAGCTCAGCAACGTGGAAGCAATGCTCATCTTGTGTCAGGCAGAGAACAGAGCCGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
3UTR TCA 72 bp TTACAACCAAAAGTAAATGAACCCGTTGGTGCGGTATaGCTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAG +
Preference number: 3 (lower is better)
Translates to: LQPKVNEPVGAV*LQPSGPAEVLQ
Trigger: CTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTTCATTTACTTTTGGTTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR GCA 72 bp TCTCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTaGAGTACCTTTCACGTGGCTTCTACAGATGGATCT +
Preference number: 3 (lower is better)
Translates to: SPHHTSLLSGLL*STFHVASTDGS
Trigger: AGATCCATCTGTAGAAGCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR GCA 72 bp ACACTGTTCTCTGCTGTGTCTGTAGCTAGGCAGGACTaGCAAAGTCTGGTTAGAGCTAGTGTGTTACCACAG +
Preference number: 3 (lower is better)
Translates to: TLFSAVSVARQD*QSLVRASVLPQ
Trigger: CTGTGGTAACACACTAGCTCTAACCAGACTTTGGCAGTCCTGCCTAGCTACAGACACAGCAGAGAACAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGGGTGTAGACCACCGGTaGCTGTGGCTCCTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: LLGGSEELGIPARGTGPGGVDHR*LWLLRG
Trigger: GCCCCTGAGGAGCCACAGCCACCGGTGGTCTACACC...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGAAGAGCTTCAGCTCCTaGACACAGCTATGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: LLGGSEELGIPARGTGPGKSFSS*TQLCSS
Trigger: GCTGCTGCATAGCTGTGTGCAGGAGCTGAAGCTCTT...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GGAGCAGGGCAGTGGAGCACTCTTCTCTTGAGTTGGAGTAGACCACGGCTCTGTGCAGGGTCACACTGCTaGACCTCAGCACGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: GAGQWSTLLLSWSRPRLCAGSHC*TSARGP
Trigger: GGGCCCACGTGCTGAGGTGCAGCAGTGTGACCCTGC...ACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR CCA 90 bp GCATCCAGCTCGTCGTACTGTACCAGGGCGTCCTCAAACTGCTGCAGCATCTCAGGTGTAGACCACCGGTaGCTGTGGCTCCTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: ASSSSYCTRASSNCCSISGVDHR*LWLLRG
Trigger: GCCCCTGAGGAGCCACAGCCACCGGTGGTCTACACC...TGAGATGCTGCAGCAGTTTGAGGACGCCCTGGTACAGTACGACGAGCTGGATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR CCA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGTACCACCTTGTGACCTaGGTTGTCCTCTTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LLGGSEELGIPARGTGPGYHLVT*VVLLLA
Trigger: AGCCAGCAAGAGGACAACCCAGGTCACAAGGTGGTA...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCCTGCACCTCAGCACGTaGGCCCCATCCTCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGLHLST*APSSRA
Trigger: GGCCCTGGAGGATGGGGCCCACGTGCTGAGGTGCAG...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGCTTCCTGTGGAGCTCTaGTGTCCCCGGAACACTGGT +
Preference number: 4 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRLPVEL*CPRNTG
Trigger: ACCAGTGTTCCGGGGACACCAGAGCTCCACAGGAAG...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
3UTR CAA 72 bp AGAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTaGGGGATACCAGCACGGGGCACAGGGCCAGGGATA +
Preference number: 4 (lower is better)
Translates to: RRDQTLLGGSEE*GIPARGTGPGI
Trigger: TATCCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCAGCTTCCTTGTGTGTGTaGCAGGCAGGGCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSASLCV*QAGPSP
Trigger: AGGGCTGGGCCCTGCCTGTCACACACACAAGGAAGC...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGCAACCTTCTATCCTCTaGAGCACCTCTAGACAGCTC +
Preference number: 4 (lower is better)
Translates to: LLGGSEELGIPARGTGPGQPSIL*STSRQL
Trigger: GAGCTGTCTAGAGGTGCTGCAGAGGATAGAAGGTTG...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGGAAGAGCCACTCTCCTaGCTCCTTAAAAGCATGTGG +
Preference number: 4 (lower is better)
Translates to: LLGGSEELGIPARGTGPGEEPLS*LLKSMW
Trigger: CCACATGCTTTTAAGGAGGCAGGAGAGTGGCTCTTC...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCGCAGGGTCACACTGCTaGACCTCAGCACGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGAGSHC*TSARGP
Trigger: GGGCCCACGTGCTGAGGTGCAGCAGTGTGACCCTGC...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGGCTGCAGGGTCACACTaGTGCACCTCAGCACGTGGG +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQERAAGSH*CTSARG
Trigger: CCCACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGC...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCAGACAGCAGAGAGTaGTCGGTCCTGAAGGGCACA +
Preference number: 4 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGADSRE*SVLKGT
Trigger: TGTGCCCTTCAGGACCGAGCACTCTCTGCTGTCTGC...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GGAGTAGACCACGGCTCTGTTCTCTGCCTGACACAAGATGAGCATTGCTTCCACCTGCACCTCAGCACGTaGGCCCCATCCTCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: GVDHGSVLCLTQDEHCFHLHLST*APSSRA
Trigger: GGCCCTGGAGGATGGGGCCCACGTGCTGAGGTGCAG...GTGGAAGCAATGCTCATCTTGTGTCAGGCAGAGAACAGAGCCGTGGTCTACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR CCA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCTCGCTGCTGGAAGTaGAGTGTGTGCTGCCTCTAC +
Preference number: 4 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGARCWK*SVCCLY
Trigger: GTAGAGGCAGCACACACTCCACTTCCAGCAGCGAGC...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGCTCAGGTCAGTAGCATaGCCCTTGTCTTCCAGATTA +
Preference number: 4 (lower is better)
Translates to: LLGGSEELGIPARGTGPGLRSVA*PLSSRL
Trigger: TAATCTGGAAGACAAGGGTCATGCTACTGACCTGAG...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCTCCTGCACACAGCTATaGAGCAGCTCCAGGGCGCGC +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGSCTQL*SSSRAR
Trigger: GCGCGCCCTGGAGCTGCTGCATAGCTGTGTGCAGGA...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGCCATTGGAAGTCTTGTaGTTGGTCAGCCACTCGGCT +
Preference number: 4 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRPLEVL*LVSHSA
Trigger: AGCCGAGTGGCTGACCAAGCACAAGACTTCCAATGG...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGCTCAGATTCCACGAGTaGTTCATCCTTGTCCACATC +
Preference number: 4 (lower is better)
Translates to: LLGGSEELGIPARGTGPGLRFHE*FILVHI
Trigger: GATGTGGACAAGGATGAAGCACTCGTGGAATCTGAG...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGCAATGGCCAGCTCTCTaGGAATCCTTCTGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGQWPAL*ESFCFL
Trigger: CAGGAAGCAGAAGGATTCTCAGAGAGCTGGCCATTG...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGTGGCACTCTGCTAGCTaGTTCCTTGTGTGTGTGACA +
Preference number: 4 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRWHSAS*FLVCVT
Trigger: TGTCACACACACAAGGAAGCAGCTAGCAGAGTGCCA...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGTTCAGCCTTGCAAACTaGATGGGCAGTACCACCTTG +
Preference number: 4 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRFSLAN*MGSTTL
Trigger: CAAGGTGGTACTGCCCATGCAGTTTGCAAGGCTGAA...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp CACGGCTCTGTTCTCTGCCTGACACAAGATGAGCATTGCTTCCACGTTGCTGAGGCTGCAGGGTCACACTaGTGCACCTCAGCACGTGGG +
Preference number: 4 (lower is better)
Translates to: HGSVLCLTQDEHCFHVAEAAGSH*CTSARG
Trigger: CCCACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGC...CTCAGCAACGTGGAAGCAATGCTCATCTTGTGTCAGGCAGAGAACAGAGCCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR TCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCATTGCTTCCACGTTGCTaGGCTGGAGGCTGTCTCCAT +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSLLPRC*AGGCLH
Trigger: ATGGAGACAGCCTCCAGCTCAGCAACGTGGAAGCAA...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGGCGTCCTCAAACTGCTaGAGCATCTCAAAGACAAAC +
Preference number: 4 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRASSNC*SISKTN
Trigger: GTTTGTCTTTGAGATGCTGCAGCAGTTTGAGGACGC...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCAAAGTGGAGTGTGTGCTaGCTCTACTCCGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSKWSVC*LYSASC
Trigger: GCAGCTTGCGGAGTAGAGGCAGCACACACTCCACTT...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGTGGGCTTGTTCTCCATaGTGTAGACCACCGGTGGCT +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQERWACSP*CRPPVA
Trigger: AGCCACCGGTGGTCTACACCATGGAGAACAAGCCCA...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCATGTGGGCAATGTTaGAGTCTATCTGGGCCCGGT +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQERPCGQC*SLSGPG
Trigger: ACCGGGCCCAGATAGACTCCAACATTGCCCACATGG...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGAAGCTAAGGATCTCCTaGCAGAAGTATTTCCGCTCC +
Preference number: 4 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRKLRIS*QKYFRS
Trigger: GGAGCGGAAATACTTCTGCCAGGAGATCCTTAGCTT...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCGCAATCTGGTCCACGTaGACAGGGATGGGCATCTGG +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGAIWST*TGMGIW
Trigger: CCAGATGCCCATCCCTGTCCACGTGGACCAGATTGC...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCAGCTCCTCCTGAACCATaGAGTATTCGCAGAAGCTCC +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSAPPEP*SIRRSS
Trigger: GGAGCTTCTGCGAATACTTCATGGTTCAGGAGGAGC...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTAAGCTCCAGGGCGCGCTaGGCCACCTCCCAGGGCCGC +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLSSRAR*ATSQGR
Trigger: GCGGCCCTGGGAGGTGGCTCAGCGCGCCCTGGAGCT...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGATCAACTGTTCTGTTaGGATCTTCTGAGTTGGGCC +
Preference number: 4 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGDQLFC*DLLSWA
Trigger: GGCCCAACTCAGAAGATCTCAACAGAACAGTTGATC...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGATGTTGGAGTCTATCTaGGCCCGGTCACAGCAACCT +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQERMLESI*ARSQQP
Trigger: AGGTTGCTGTGACCGGGCCCAGATAGACTCCAACAT...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGGGGTTGTCCTCTTGCTaGCTGGCAAAGCTAAGGATC +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQERGLSSC*LAKLRI
Trigger: GATCCTTAGCTTTGCCAGCCAGCAAGAGGACAACCC...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGCATGGACCACAGCATTaGGAGGGTCAAAATGGAGAT +
Preference number: 4 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGHGPQH*EGQNGD
Trigger: ATCTCCATTTTGACCCTCCCAATGCTGTGGTCCATG...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTGTTGACCACGTACTGTaGGAAGAGGGCATCCAGCTC +
Preference number: 4 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGVDHVL*EEGIQL
Trigger: GAGCTGGATGCCCTCTTCTCACAGTACGTGGTCAAC...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCTTCAAAGGCCTCTACTaGGGACAGTGCTTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGFKGLY*GQCFLE
Trigger: CTCCAGGAAGCACTGTCCTCAGTAGAGGCCTTTGAA...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCACAGTACTCAGCTCCTaGAGCAGGAAGGATCTCAGC +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGTVLSS*SRKDLS
Trigger: GCTGAGATCCTTCCTGCTTCAGGAGCTGAGTACTGT...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GGAGCAGGGCAGTGGAGCACTCTTCTCTTGAGTTGGAGTAGACCACGGCTCTGTGAAGAGCCACTCTCCTaGCTCCTTAAAAGCATGTGG +
Preference number: 4 (lower is better)
Translates to: GAGQWSTLLLSWSRPRLCEEPLS*LLKSMW
Trigger: CCACATGCTTTTAAGGAGGCAGGAGAGTGGCTCTTC...ACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR GCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCACACGTGGTACGCAGGTaGAGTGGGAAGACCGATGCT +
Preference number: 4 (lower is better)
Translates to: DQSTREAPLIFTPDGASSHVVRR*SGKTDA
Trigger: AGCATCGGTCTTCCCACTGCACCTGCGTACCACGTG...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCAGCTGGTCATCTAGGTaGTTGTCCACTGACAGGCTG +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGSWSSR*LSTDRL
Trigger: CAGCCTGTCAGTGGACAAGCACCTAGATGACCAGCT...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCAAAAAGTCAGCCAGTTaGCACCATCCCCAGCTCCGA +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGKKSAS*HHPQLR
Trigger: TCGGAGCTGGGGATGGTGCCAACTGGCTGACTTTTT...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGTATACATCTCAATGGTaGCATGGGACAAGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGYTSQW*HGTSPG
Trigger: ACCTGGACTTGTCCCATGCCACCATTGAGATGTATA...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCTTTTCCAACAAGCTTaGCAGATCGAATCCGCCCGA +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQERLFQQA*QIESAR
Trigger: TCGGGCGGATTCGATCTGCCAAGCTTGTTGGAAAAG...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCACGTCATACTGTACAATaGGGTGGATGTGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSRHTVQ*GGCVPG
Trigger: TCCTGGCACACATCCACCCCATTGTACAGTATGACG...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGAGTTCTGACAGGTTCTaGACACAGACTTGCACATAT +
Preference number: 4 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRSSDRF*TQTCTY
Trigger: ATATGTGCAAGTCTGTGTCCAGAACCTGTCAGAACT...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GCATCCAGCTCGTCGTACTGTACCAGGGCGTCCTCAAACTGCTGCAGCATCTCAAGCTCCTCCTTGAACTaGACAAAGTTGGATTCCAGG +
Preference number: 4 (lower is better)
Translates to: ASSSSYCTRASSNCCSISSSSLN*TKLDSR
Trigger: CCTGGAATCCAACTTTGTTCAGTTCAAGGAGGAGCT...TGAGATGCTGCAGCAGTTTGAGGACGCCCTGGTACAGTACGACGAGCTGGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR TCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCAGCAGCAGCTCCTCCTTaGACTGAACAAAGTTGGATT +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSAAAPP*TEQSWI
Trigger: AATCCAACTTTGTTCAGTTCAAGGAGGAGCTGCTGC...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp CTCTGTCCTCTTTTCCCTCAAAGTCCGCATGTCATCCTCAAACTTGCCGAGGTTGGAGGAAGGGGAAGGTaGGCAGGGCTTTGTTCCCTT +
Preference number: 4 (lower is better)
Translates to: LCPLFPQSPHVILKLAEVGGRGR*AGLCSL
Trigger: AAGGGAACAAAGCCCTGCTCACCTTCCCCTTCCTCC...AACCTCGGCAAGTTTGAGGATGACATGCGGACTTTGAGGGAAAAGAGGACAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR TCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCAGTAAACTTGACTTTCTaGGGGATGCCAGCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSVNLTF*GMPAKR
Trigger: CCTTTTGGCTGGCATCCCTCAGAAAGTCAAGTTTAC...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCACTGGCCAGAAGACTaGTGGTCTGCAAGTAGTTTT +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQERHWPED*WSASSF
Trigger: AAAACTACTTGCAGACCAGCAGTCTTCTGGCCAGTG...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp TGGAGCACTCTTCTCTTGAGTTGGAGTAGACCACGGCTCTGTTCTCTGCCTGACCCATTGGAAGTCTTGTaGTTGGTCAGCCACTCGGCT +
Preference number: 4 (lower is better)
Translates to: WSTLLLSWSRPRLCSLPDPLEVL*LVSHSA
Trigger: AGCCGAGTGGCTGACCAAGCACAAGACTTCCAATGG...GTCAGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR GCA 90 bp GGCTCTGTTCTCTGCCTGACACAAGATGAGCATTGCTTCCACGTTGCTGAGCTGAATGGGGTGGATGTGTaGCAGGACAAACCACACAGG +
Preference number: 4 (lower is better)
Translates to: GSVLCLTQDEHCFHVAELNGVDV*QDKPHR
Trigger: CCTGTGTGGTTTGTCCTGGCACACATCCACCCCATT...CAGCTCAGCAACGTGGAAGCAATGCTCATCTTGTGTCAGGCAGAGAACAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR GCA 90 bp AGGACACTGTTCTCTGCTGTGTCTGTAGCTAGGCAGGACTGCCAAAGTCTGGTTCTGTGTGTTCAGAGGTaGCAGCCTCAGGTCAGTAGC +
Preference number: 4 (lower is better)
Translates to: RTLFSAVSVARQDCQSLVLCVQR*QPQVSS
Trigger: GCTACTGACCTGAGGCTGGCACCTCTGAACACACAG...AACCAGACTTTGGCAGTCCTGCCTAGCTACAGACACAGCAGAGAACAGTGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCAACAAAGAACACGGACTaGTTGCTGTGGATAAGCTGC +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSTKNTD*LLWISC
Trigger: GCAGCTTATCCACAGCAAGCAGTCCGTGTTCTTTGT...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp TGGCTCTGTCCTCTTTTCCCTCAAAGTCCGCATGTCATCCTCAAACTTGCCGAGTGGGCTTGTTCTCCATaGTGTAGACCACCGGTGGCT +
Preference number: 4 (lower is better)
Translates to: WLCPLFPQSPHVILKLAEWACSP*CRPPVA
Trigger: AGCCACCGGTGGTCTACACCATGGAGAACAAGCCCA...CTCGGCAAGTTTGAGGATGACATGCGGACTTTGAGGGAAAAGAGGACAGAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR CCA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTGCCTTGCAAACTGCATaGGCAGTACCACCTTGTGAC +
Preference number: 4 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGALQTA*AVPPCD
Trigger: GTCACAAGGTGGTACTGCCCATGCAGTTTGCAAGGC...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTACAGGGATGGGCATCTaGCTGCATACCGTTATCTCC +
Preference number: 4 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGTGMGI*LHTVIS
Trigger: GGAGATAACGGTATGCAGCCAGATGCCCATCCCTGT...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp CAGTGGAGCACTCTTCTCTTGAGTTGGAGTAGACCACGGCTCTGTTCTCTGCCTTGGAAGTCTTGTGCTTaGTCAGCCACTCGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: QWSTLLLSWSRPRLCSLPWKSCA*SATRLS
Trigger: AGACAGCCGAGTGGCTGACCAAGCACAAGACTTCCA...AGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR CCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCATCCGGAGCAGGGCAGTaGAGCACTCTTCTCTTGAGT +
Preference number: 4 (lower is better)
Translates to: DQSTREAPLIFTPDGASSSGAGQ*STLLLS
Trigger: ACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCCGGA...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGGAGGTAAATAAATTCTaGTCTCCAGCACAGGTGACG +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQEREVNKF*SPAQVT
Trigger: CGTCACCTGTGCTGGAGATCAGAATTTATTTACCTC...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTAACGCAAGCTCCTCCTaGACCATGAAGTATTCGCAG +
Preference number: 4 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGNASSS*TMKYSQ
Trigger: CTGCGAATACTTCATGGTTCAGGAGGAGCTTGCGTT...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTGAGATCCTTCAGCCTTaGAAACTGCATGGGCAGTAC +
Preference number: 4 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGEILQP*KLHGQY
Trigger: GTACTGCCCATGCAGTTTGCAAGGCTGAAGGATCTC...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCATTCCATTGGTTCTCTTaGAAGCTGCTGGGAAAGTGT +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSFHWFS*KLLGKC
Trigger: ACACTTTCCCAGCAGCTTCCAAGAGAACCAATGGAA...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCTACTGTACAATGGGGTaGATGTGTGCCAGGACAAAC +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGYCTMG*MCARTN
Trigger: GTTTGTCCTGGCACACATCCACCCCATTGTACAGTA...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp CTCTGCCTGACACAAGATGAGCATTGCTTCCACGTTGCTGAGCTGGAGGCTGTCTACTGTACAATGGGGTaGATGTGTGCCAGGACAAAC +
Preference number: 4 (lower is better)
Translates to: LCLTQDEHCFHVAELEAVYCTMG*MCARTN
Trigger: GTTTGTCCTGGCACACATCCACCCCATTGTACAGTA...GACAGCCTCCAGCTCAGCAACGTGGAAGCAATGCTCATCTTGTGTCAGGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR CCA 90 bp TGGAGCACTCTTCTCTTGAGTTGGAGTAGACCACGGCTCTGTTCTCTGCCTGACCGTCATACTGTACAATaGGGTGGATGTGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: WSTLLLSWSRPRLCSLPDRHTVQ*GGCVPG
Trigger: TCCTGGCACACATCCACCCCATTGTACAGTATGACG...GTCAGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR CCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCAACGGACTGCTTGCTGTaGATAAGCTGCTGGGACTGT +
Preference number: 4 (lower is better)
Translates to: DQSTREAPLIFTPDGASSTDCLL*ISCWDC
Trigger: ACAGTCCCAGCAGCTTATCCACAGCAAGCAGTCCGT...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTAGCTCCTCCTTGAACTaGACAAAGTTGGATTCCAGG +
Preference number: 4 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGSSSLN*TKLDSR
Trigger: CCTGGAATCCAACTTTGTTCAGTTCAAGGAGGAGCT...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTCAGTCCACAGAGCTATaGGCTTTCAGAACATTCTGC +
Preference number: 4 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGQSTEL*AFRTFC
Trigger: GCAGAATGTTCTGAAAGCTCATAGCTCTGTGGACTG...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp AGGACACTGTTCTCTGCTGTGTCTGTAGCTAGGCAGGACTGCCAAAGTCTGGTTGCATTCCAGGATTCCTaGGTTCGAGAAGAGTCCTTC +
Preference number: 4 (lower is better)
Translates to: RTLFSAVSVARQDCQSLVAFQDS*VREESF
Trigger: GAAGGACTCTTCTCGAACTCAGGAATCCTGGAATGC...AACCAGACTTTGGCAGTCCTGCCTAGCTACAGACACAGCAGAGAACAGTGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCAGCCTGTGGTGTTCAATaGGTTATCAGAGGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: DQSTREAPLIFTPDGASSACGVQ*VIRGAS
Trigger: AGAAGCCCCTCTGATAACTCATTGAACACCACAGGC...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GTTGGAGTAGACCACGGCTCTGTTCTCTGCCTGACACAAGATGAGCATTGCTTCGCCTGTGGTGTTCAATaGGTTATCAGAGGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: VGVDHGSVLCLTQDEHCFACGVQ*VIRGAS
Trigger: AGAAGCCCCTCTGATAACTCATTGAACACCACAGGC...GAAGCAATGCTCATCTTGTGTCAGGCAGAGAACAGAGCCGTGGTCTACTCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR GCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCAAGGGCGTCCTCAAACTaGTGCAGCATCTCAAAGACA +
Preference number: 4 (lower is better)
Translates to: DQSTREAPLIFTPDGASSRASSN*CSISKT
Trigger: TGTCTTTGAGATGCTGCAGCAGTTTGAGGACGCCCT...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCATTGTATACATCTCAATaGTGGCATGGGACAAGTCCA +
Preference number: 4 (lower is better)
Translates to: LQALSPLRLIRAQERPLSLYTSQ*WHGTSP
Trigger: TGGACTTGTCCCATGCCACCATTGAGATGTATACAA...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCCATTTCTGCCTTCTGTaGCGACCTTTTCCTCATGTA +
Preference number: 4 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGHFCLL*RPFPHV
Trigger: TACATGAGGAAAAGGTCGCCACAGAAGGCAGAAATG...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGTTTTCGATGCTGAAGTaGACATTGACAGCAATCTGG +
Preference number: 4 (lower is better)
Translates to: AEVLQALSPLRLIRAQERFSMLK*TLTAIW
Trigger: CCAGATTGCTGTCAATGTCCACTTCAGCATCGAAAA...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGCTCCTTAAAAGCATGTaGACATTCCTACAGATAATG +
Preference number: 4 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGLLKSM*TFLQIM
Trigger: CATTATCTGTAGGAATGTCCACATGCTTTTAAGGAG...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp TCTGTTCTCTGCCTGACACAAGATGAGCATTGCTTCCACGTTGCTGAGCTGGAGGTAAACTTGACTTTCTaGGGGATGCCAGCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: SVLCLTQDEHCFHVAELEVNLTF*GMPAKR
Trigger: CCTTTTGGCTGGCATCCCTCAGAAAGTCAAGTTTAC...CTCCAGCTCAGCAACGTGGAAGCAATGCTCATCTTGTGTCAGGCAGAGAACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR GCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCAGCTTTCAGAACATTCTaGCACTTGGTGAGGTCGTCT +
Preference number: 4 (lower is better)
Translates to: DQSTREAPLIFTPDGASSAFRTF*HLVRSS
Trigger: AGACGACCTCACCAAGTGGCAGAATGTTCTGAAAGC...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp AGGACACTGTTCTCTGCTGTGTCTGTAGCTAGGCAGGACTGCCAAAGTCTGGTTACACAAGATGAGCATTaGTTCCACGTTGCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: RTLFSAVSVARQDCQSLVTQDEH*FHVAEL
Trigger: CAGCTCAGCAACGTGGAAGCAATGCTCATCTTGTGT...AACCAGACTTTGGCAGTCCTGCCTAGCTACAGACACAGCAGAGAACAGTGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTAGTGCAGAGGAGGGGGTaGCTCCTGTGTCCACGTCAG +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLVQRRG*LLCPRQ
Trigger: CTGACGTGGACACAGGAGCCACCCCCTCCTCTGCAC...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTAGGAGGAAGGGGAAGGTaGGCAGGGCTTTGTTCCCTT +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLGGRGR*AGLCSL
Trigger: AAGGGAACAAAGCCCTGCTCACCTTCCCCTTCCTCC...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp AGGACACTGTTCTCTGCTGTGTCTGTAGCTAGGCAGGACTGCCAAAGTCTGGTTCTGAAGATACATTTCTaGCTTCTGTGGCGACCTTTT +
Preference number: 4 (lower is better)
Translates to: RTLFSAVSVARQDCQSLVLKIHF*LLWRPF
Trigger: AAAAGGTCGCCACAGAAGGCAGAAATGTATCTTCAG...AACCAGACTTTGGCAGTCCTGCCTAGCTACAGACACAGCAGAGAACAGTGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCACACACTGAATGTCAGTaGAATGACAGTGGAGTAGAT +
Preference number: 4 (lower is better)
Translates to: DQSTREAPLIFTPDGASSHTECQ*NDSGVD
Trigger: ATCTACTCCACTGTCATTGCACTGACATTCAGTGTG...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR TCA 90 bp TCATCCTCAAACTTGCCGAGGTTTTTGGTGAAAGACATGAGCAGCAGAGTCCTGGAGGTAAATAAATTCTaGTCTCCAGCACAGGTGACG +
Preference number: 4 (lower is better)
Translates to: SSSNLPRFLVKDMSSRVLEVNKF*SPAQVT
Trigger: CGTCACCTGTGCTGGAGATCAGAATTTATTTACCTC...CAGGACTCTGCTGCTCATGTCTTTCACCAAAAACCTCGGCAAGTTTGAGGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR CCA 90 bp TGGAGCACTCTTCTCTTGAGTTGGAGTAGACCACGGCTCTGTTCTCTGCCTGACCTCCTTAAAAGCATGTaGACATTCCTACAGATAATG +
Preference number: 4 (lower is better)
Translates to: WSTLLLSWSRPRLCSLPDLLKSM*TFLQIM
Trigger: CATTATCTGTAGGAATGTCCACATGCTTTTAAGGAG...GTCAGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
3UTR CAA 72 bp CTCTTTTCCCTCAAAGTCCGCATGTCATCCTCAAACTaGCCGAGGTTTTTGGTGAAAGACATGAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: LFSLKVRMSSSN*PRFLVKDMSSR
Trigger: TCTGCTGCTCATGTCTTTCACCAAAAACCTCGGCAAGTTTGAGGATGACATGCGGACTTTGAGGGAAAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR GCA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCACCTCATGTAAAATTCTaGCAGATCTTTTCCAACAAG +
Preference number: 4 (lower is better)
Translates to: DQSTREAPLIFTPDGASSPHVKF*QIFSNK
Trigger: CTTGTTGGAAAAGATCTGGCAGAATTTTACATGAGG...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTAAATGGGGTGGATGTGTaGCAGGACAAACCACACAGG +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLNGVDV*QDKPHR
Trigger: CCTGTGTGGTTTGTCCTGGCACACATCCACCCCATT...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp AAACTGCTGCAGCATCTCAAAGACAAACGCAAGCTCCTCCTGAACCATGAAGTACAGGTGAATCATTTTTaGAGCTCGGCCATAAGACCT +
Preference number: 4 (lower is better)
Translates to: KLLQHLKDKRKLLLNHEVQVNHF*SSAIRP
Trigger: AGGTCTTATGGCCGAGCTCCAAAAATGATTCACCTG...TACTTCATGGTTCAGGAGGAGCTTGCGTTTGTCTTTGAGATGCTGCAGCAGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR CCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTATGGAAGTCTTGTGCTTaGTCAGCCACTCGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLWKSCA*SATRLS
Trigger: AGACAGCCGAGTGGCTGACCAAGCACAAGACTTCCA...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTACTGCTCTTCAGAAGCTaGGGAGAACCCCACAGAGAA +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLLLFRS*GEPHRE
Trigger: TTCTCTGTGGGGTTCTCCCCAGCTTCTGAAGAGCAG...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR GCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTAAGCAGAGTAGCTTCTTaGTTCTGTATCAGCTCACGC +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLSRVAS*FCISSR
Trigger: GCGTGAGCTGATACAGAAGCAAGAAGCTACTCTGCT...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTATGGCCAGAAGACTGCTaGTCTGCAAGTAGTTTTCCA +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLWPEDC*SASSFP
Trigger: TGGAAAACTACTTGCAGACCAGCAGTCTTCTGGCCA...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CCA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTACAGGTGAATCATTTTTaGAGCTCGGCCATAAGACCT +
Preference number: 4 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLQVNHF*SSAIRP
Trigger: AGGTCTTATGGCCGAGCTCCAAAAATGATTCACCTG...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 90 bp GGTTCTTTGGCCTGGGTCTTGAAGGCTATCTTGTTGGCGCCTGGCTaGAGGGTCACACTGCTGCACCTCAGCACGTGGGCCCCATCCTCC +
Preference number: 5 (lower is better)
Translates to: GSLAWVLKAILLAPG*RVTLLHLSTWAPSS
Trigger: GGAGGATGGGGCCCACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CCA 90 bp TCCAGGTTCTTTGGCCTGGGTCTTGAAGGCTATCTTGTTGGCGCCTaGCTGCAGGGTCACACTGCTGCACCTCAGCACGTGGGCCCCATC +
Preference number: 5 (lower is better)
Translates to: SRFFGLGLEGYLVGA*LQGHTAAPQHVGPI
Trigger: GATGGGGCCCACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS-3UTR CAA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGAGCAGAGTCCTGAGTTaGGTCAGGAAGGCATTCCAG +
Preference number: 5 (lower is better)
Translates to: LLGGSEELGIPARGTGPGSRVLS*VRKAFQ
Trigger: CTGGAATGCCTTCCTGACCAAACTCAGGACTCTGCT...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGTCTTTTCCAACAAGCTaGGCAGATCGAATCCGCCCG +
Preference number: 5 (lower is better)
Translates to: LLGGSEELGIPARGTGPGSFPTS*ADRIRP
Trigger: CGGGCGGATTCGATCTGCCAAGCTTGTTGGAAAAGA...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp CTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCACAGGGCCAGGGTCTTTGGCCTGGGTCTaGAAGGCTATCTTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: LLGGSEELGIPARGTGPGSLAWV*KAILLA
Trigger: CGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGA...CCCTGGCCCTGTGCCCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 90 bp CAGCCAGTTGGCACCATCCCCAGCTCCGAAGTTGACCACGTACTGTaGGAAGAGGGCATCCAGCTCGTCGTACTGTACCAGGGCGTCCTC +
Preference number: 5 (lower is better)
Translates to: QPVGTIPSSEVDHVL*EEGIQLVVLYQGVL
Trigger: GAGGACGCCCTGGTACAGTACGACGAGCTGGATGCCCTCTTCTCACAGTACGTGGTCAACTTCGGAGCTGGGGATGGTGCCAACTGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp GAGGCCCGAAGCTGCCGCAGCGTGTATGTTCCAGGTTCTTTGGCCTaGGTCTTGAAGGCTATCTTGTTGGCGCCTGGCTGCAGGGTCACA +
Preference number: 5 (lower is better)
Translates to: EARSCRSVYVPGSLA*VLKAILLAPGCRVT
Trigger: TGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACCTGGAACATACACGCTGCGGCAGCTTCGGGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS TCA 90 bp ACTCGATCACGTGGTACGCAGGTGCAGTGGGAAGACCGATGCTTGTaGCCTTGTCAGAGGACTGGATCCGGAGCAGGGCAGTGGAGCACT +
Preference number: 5 (lower is better)
Translates to: TRSRGTQVQWEDRCL*PCQRTGSGAGQWST
Trigger: AGTGCTCCACTGCCCTGCTCCGGATCCAGTCCTCTGACAAGGTCACAAGCATCGGTCTTCCCACTGCACCTGCGTACCACGTGATCGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGCTTTGTTCCCTTCTTaGGGCAGCAGCTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGALFPS*GSSSSL
Trigger: CAAGGAGGAGCTGCTGCCCAAAGAAGGGAACAAAGC...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp GCAGGTGCAGTGGGAAGACCGATGCTTGTGACCTTGTCAGAGGACTaGATCCGGAGCAGGGCAGTGGAGCACTCTTCTCTTGAGTTGGAG +
Preference number: 5 (lower is better)
Translates to: AGAVGRPMLVTLSED*IRSRAVEHSSLELE
Trigger: CTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCCGGATCCAGTCCTCTGACAAGGTCACAAGCATCGGTCTTCCCACTGCACCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp GTAAGTGTAGGGCTTCAAGGAAACGGTCAGCTGCTCTTCAGAAGCTaGGGAGAACCCCACAGAGAACTGGCAGTGCAGAGGAGGGGGTGG +
Preference number: 5 (lower is better)
Translates to: VSVGLQGNGQLLFRS*GEPHRELAVQRRGW
Trigger: CCACCCCCTCCTCTGCACTGCCAGTTCTCTGTGGGGTTCTCCCCAGCTTCTGAAGAGCAGCTGACCGTTTCCTTGAAGCCCTACACTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGGGAGATCCTTCAGCCTaGCAAACTGCATGGGCAGTA +
Preference number: 5 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGGDPSA*QTAWAV
Trigger: TACTGCCCATGCAGTTTGCAAGGCTGAAGGATCTCC...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCACCGATGCTTGTGACCTaGTCAGAGGACTGGATCCGG +
Preference number: 5 (lower is better)
Translates to: LQALSPLRLIRAQERPLSPMLVT*SEDWIR
Trigger: CCGGATCCAGTCCTCTGACAAGGTCACAAGCATCGG...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp TGGACATTGACAGCAATCTGGTCCACGTGGACAGGGATGGGCATCTaGCTGCATACCGTTATCTCCACAGTCAGGACACCACCCGCATGG +
Preference number: 5 (lower is better)
Translates to: WTLTAIWSTWTGMGI*LHTVISTVRTPPAW
Trigger: CCATGCGGGTGGTGTCCTGACTGTGGAGATAACGGTATGCAGCCAGATGCCCATCCCTGTCCACGTGGACCAGATTGCTGTCAATGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGATTCCATTGGTTCTCTaGGAAGCTGCTGGGAAAGTG +
Preference number: 5 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRIPLVL*EAAGKV
Trigger: CACTTTCCCAGCAGCTTCCAAGAGAACCAATGGAAT...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGAAGGTGAGCAGGGCTTaGTTCCCTTCTTTGGGCAGC +
Preference number: 5 (lower is better)
Translates to: AEVLQALSPLRLIRAQERKVSRA*FPSLGS
Trigger: GCTGCCCAAAGAAGGGAACAAAGCCCTGCTCACCTT...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCACCATGTGGGCAATGTaGGAGTCTATCTGGGCCCGG +
Preference number: 5 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGTMWAM*ESIWAR
Trigger: CCGGGCCCAGATAGACTCCAACATTGCCCACATGGT...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGAGCATTGCTTCCACGTaGCTGAGCTGGAGGCTGTCT +
Preference number: 5 (lower is better)
Translates to: AEVLQALSPLRLIRAQERSIAST*LSWRLS
Trigger: AGACAGCCTCCAGCTCAGCAACGTGGAAGCAATGCT...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 90 bp CGACAACTCCAGAGCGGGCAGGCTGTTCTGAGATGCAGGGAACAGTaGGGCCTCAGCTGGGAAGGTGATGATTCCATTGGAAGTCTTGTG +
Preference number: 5 (lower is better)
Translates to: RQLQSGQAVLRCREQ*GLSWEGDDSIGSLV
Trigger: CACAAGACTTCCAATGGAATCATCACCTTCCCAGCTGAGGCCTCACTGTTCCCTGCATCTCAGAACAGCCTGCCCGCTCTGGAGTTGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS TCA 90 bp GTCAGAGGACTGGATCCGGAGCAGGGCAGTGGAGCACTCTTCTCTTaGGTTGGAGTAGACCACGGCTCTGTTCTCTGCCTGACACAAGAT +
Preference number: 5 (lower is better)
Translates to: VRGLDPEQGSGALFS*VGVDHGSVLCLTQD
Trigger: ATCTTGTGTCAGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCCGGATCCAGTCCTCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 90 bp GTCAGCTCCCAGACAAAGAACACGGACTGCTTGCTGTGGATAAGCTaGTGGGACTGTGTGTTCAGAGGTGCCAGCCTCAGGTCAGTAGCA +
Preference number: 5 (lower is better)
Translates to: VSSQTKNTDCLLWIS*WDCVFRGASLRSVA
Trigger: TGCTACTGACCTGAGGCTGGCACCTCTGAACACACAGTCCCAGCAGCTTATCCACAGCAAGCAGTCCGTGTTCTTTGTCTGGGAGCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCACCTGGGTTGTCCTCTaGCTGGCTGGCAAAGCTAAG +
Preference number: 5 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGTWVVL*LAGKAK
Trigger: CTTAGCTTTGCCAGCCAGCAAGAGGACAACCCAGGT...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCATGGAGCACTCTTCTCTaGAGTTGGAGTAGACCACGG +
Preference number: 5 (lower is better)
Translates to: LQALSPLRLIRAQERPLSWSTLL*SWSRPR
Trigger: CCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCA...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGGCCCAATTGCTGCTGTaGTCCACAACTTCATACATA +
Preference number: 5 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRAQLLL*STTSYI
Trigger: TATGTATGAAGTTGTGGACAACAGCAGCAATTGGGC...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp GCTTTTCCATTGCATAGCTCCACAGCCCCACCATGTGGGCAATGTTaGAGTCTATCTGGGCCCGGTCACAGCAACCTTCTATCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: AFPLHSSTAPPCGQC*SLSGPGHSNLLSSA
Trigger: TGCAGAGGATAGAAGGTTGCTGTGACCGGGCCCAGATAGACTCCAACATTGCCCACATGGTGGGGCTGTGGAGCTATGCAATGGAAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp CATTGGGAGGGTCAAAATGGAGATCCTTCAGCCTTGCAAACTGCATaGGCAGTACCACCTTGTGACCTGGGTTGTCCTCTTGCTGGCTGG +
Preference number: 5 (lower is better)
Translates to: HWEGQNGDPSALQTA*AVPPCDLGCPLAGW
Trigger: CCAGCCAGCAAGAGGACAACCCAGGTCACAAGGTGGTACTGCCCATGCAGTTTGCAAGGCTGAAGGATCTCCATTTTGACCCTCCCAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp CCGTTATCTCCACAGTCAGGACACCACCCGCATGGACCACAGCATTaGGAGGGTCAAAATGGAGATCCTTCAGCCTTGCAAACTGCATGG +
Preference number: 5 (lower is better)
Translates to: PLSPQSGHHPHGPQH*EGQNGDPSALQTAW
Trigger: CCATGCAGTTTGCAAGGCTGAAGGATCTCCATTTTGACCCTCCCAATGCTGTGGTCCATGCGGGTGGTGTCCTGACTGTGGAGATAACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp AACCCGTTGGTGCGGTATGACTGCAACCCAGTGGCCCAGCTGAGGTCCTCCAGGCAAGTAGTTTTCCATTaGCCCAAGGTGTTTTTGGCA +
Preference number: 5 (lower is better)
Translates to: NPLVRYDCNPVAQLRSSRQVVFH*PKVFLA
Trigger: TGCCAAAAACACCTTGGGCAAATGGAAAACTACTTG...CCTGGAGGACCTCAGCTGGGCCACTGGGTTGCAGTCATACCGCACCAACGGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp CTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGCCCCTCTCAATTCCATTGGAAGTCTaGTGCTTGGTCAGCCACTCG +
Preference number: 5 (lower is better)
Translates to: LQALSPLRLIRAQERPLSIPLEV*CLVSHS
Trigger: CGAGTGGCTGACCAAGCACAAGACTTCCAATGGAAT...TGAGAGGGGCCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp TCCACACCACACTTCCCTCCTCTCTGGTCTTCTCTGCAGTACCTTTCACGTGGCAAGAACACGGACTGCTaGCTGTGGATAAGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: STPHFPPLWSSLQYLSRGKNTDC*LWISCW
Trigger: CCAGCAGCTTATCCACAGCAAGCAGTCCGTGTTCTT...GCCACGTGAAAGGTACTGCAGAGAAGACCAGAGAGGAGGGAAGTGTGGTGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 90 bp ATGTTGGAGTCTATCTGGGCCCGGTCACAGCAACCTTCTATCCTCTaGAGCACCTCTAGACAGCTCAGAAAGACCCAGCAATCCAGAGCA +
Preference number: 5 (lower is better)
Translates to: MLESIWARSQQPSIL*STSRQLRKTQQSRA
Trigger: TGCTCTGGATTGCTGGGTCTTTCTGAGCTGTCTAGAGGTGCTGCAGAGGATAGAAGGTTGCTGTGACCGGGCCCAGATAGACTCCAACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp GGAGCTGAAGGTAAAGACAGAACCTCCAGCTCAAACTCGATCACGTaGTACGCAGGTGCAGTGGGAAGACCGATGCTTGTGACCTTGTCA +
Preference number: 5 (lower is better)
Translates to: GAEGKDRTSSSNSIT*YAGAVGRPMLVTLS
Trigger: TGACAAGGTCACAAGCATCGGTCTTCCCACTGCACCTGCGTACCACGTGATCGAGTTTGAGCTGGAGGTTCTGTCTTTACCTTCAGCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GAAGAGACCAGACCCTCTTGGGAGGGTCTGAGGAGTTGGGGATACCAGCACGGGATGTCATCCTCAAACTaGCCGAGGTTTTTGGTGAAA +
Preference number: 5 (lower is better)
Translates to: EETRPSWEGLRSWGYQHGMSSSN*PRFLVK
Trigger: TTTCACCAAAAACCTCGGCAAGTTTGAGGATGACAT...CCCGTGCTGGTATCCCCAACTCCTCAGACCCTCCCAAGAGGGTCTGGTCTCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp CAGTGGAGCACTCTTCTCTTGAGTTGGAGTAGACCACGGCTCTGTTCTCTGCCTTCTTTGGCCTGGGTCTaGAAGGCTATCTTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: QWSTLLLSWSRPRLCSLPSLAWV*KAILLA
Trigger: CGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGA...AGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS GCA 90 bp AGACAGCAGAGAGTGCTCGGTCCTGAAGGGCACACTGAATGTCAGTaGAATGACAGTGGAGTAGATAGACCACGGGCAATCAATGGACAC +
Preference number: 5 (lower is better)
Translates to: RQQRVLGPEGHTECQ*NDSGVDRPRAINGH
Trigger: GTGTCCATTGATTGCCCGTGGTCTATCTACTCCACTGTCATTGCACTGACATTCAGTGTGCCCTTCAGGACCGAGCACTCTCTGCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTCCAGGTGAATCATTTTaGGAGCTCGGCCATAAGACC +
Preference number: 5 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGPGESF*ELGHKT
Trigger: GGTCTTATGGCCGAGCTCCAAAAATGATTCACCTGG...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp CACGGCTCTGTTCTCTGCCTGACACAAGATGAGCATTGCTTCCACGTTGCTGAGATTCCATTGGAAGTCTaGTGCTTGGTCAGCCACTCG +
Preference number: 5 (lower is better)
Translates to: HGSVLCLTQDEHCFHVAEIPLEV*CLVSHS
Trigger: CGAGTGGCTGACCAAGCACAAGACTTCCAATGGAAT...CTCAGCAACGTGGAAGCAATGCTCATCTTGTGTCAGGCAGAGAACAGAGCCGTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR CAA 90 bp GCTGAGGTCCTCCAGGCCCTGAGTCCTTTACGACTGATCAGAGCACAAGAGAGGAAGGTGATGATTCCATaGGAAGTCTTGTGCTTGGTC +
Preference number: 5 (lower is better)
Translates to: AEVLQALSPLRLIRAQERKVMIP*EVLCLV
Trigger: GACCAAGCACAAGACTTCCAATGGAATCATCACCTT...CCTCTCTTGTGCTCTGATCAGTCGTAAAGGACTCAGGGCCTGGAGGACCTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 90 bp AGCAGCAGAGTCCTGAGTTTGGTCAGGAAGGCATTCCAGGATTCCTaGGTTCGAGAAGAGTCCTTCAAAGGGTCAGAGAGCACAACACAC +
Preference number: 5 (lower is better)
Translates to: SSRVLSLVRKAFQDS*VREESFKGSESTTH
Trigger: GTGTGTTGTGCTCTCTGACCCTTTGAAGGACTCTTCTCGAACTCAGGAATCCTGGAATGCCTTCCTGACCAAACTCAGGACTCTGCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 90 bp ACACAGACTTGCACATATTTTCGGGTTCCAGCAGACAGCAGAGAGTaGTCGGTCCTGAAGGGCACACTGAATGTCAGTGCAATGACAGTG +
Preference number: 5 (lower is better)
Translates to: TQTCTYFRVPADSRE*SVLKGTLNVSAMTV
Trigger: CACTGTCATTGCACTGACATTCAGTGTGCCCTTCAGGACCGAGCACTCTCTGCTGTCTGCTGGAACCCGAAAATATGTGCAAGTCTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 90 bp TCTGACAGCTCAAAGTCCAGTTCTGACAGGTTCTGGACACAGACTTaGACATATTTTCGGGTTCCAGCAGACAGCAGAGAGTGCTCGGTC +
Preference number: 5 (lower is better)
Translates to: SDSSKSSSDRFWTQT*TYFRVPADSRECSV
Trigger: GACCGAGCACTCTCTGCTGTCTGCTGGAACCCGAAAATATGTGCAAGTCTGTGTCCAGAACCTGTCAGAACTGGACTTTGAGCTGTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp TCCGCTCCTCCTCTGTCAGGTGATGATCACTGGCCAGAAGACTGCTaGTCTGCAAGTAGTTTTCCATTTGCCCAAGGTGTTTTTGGCACT +
Preference number: 5 (lower is better)
Translates to: SAPPLSGDDHWPEDC*SASSFPFAQGVFGT
Trigger: AGTGCCAAAAACACCTTGGGCAAATGGAAAACTACTTGCAGACCAGCAGTCTTCTGGCCAGTGATCATCACCTGACAGAGGAGGAGCGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp CCTGGCAGAAGTATTTCCGCTCCTCCTCTGTCAGGTGATGATCACTaGCCAGAAGACTGCTGGTCTGCAAGTAGTTTTCCATTTGCCCAA +
Preference number: 5 (lower is better)
Translates to: PGRSISAPPLSGDDH*PEDCWSASSFPFAQ
Trigger: TTGGGCAAATGGAAAACTACTTGCAGACCAGCAGTCTTCTGGCCAGTGATCATCACCTGACAGAGGAGGAGCGGAAATACTTCTGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp CTGCAGCATCTCAAAGACAAACGCAAGCTCCTCCTGAACCATGAAGTATTCGCAAAGGTGAGCAGGGCTTaGTTCCCTTCTTTGGGCAGC +
Preference number: 5 (lower is better)
Translates to: LQHLKDKRKLLLNHEVFAKVSRA*FPSLGS
Trigger: GCTGCCCAAAGAAGGGAACAAAGCCCTGCTCACCTT...TGCGAATACTTCATGGTTCAGGAGGAGCTTGCGTTTGTCTTTGAGATGCTGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR CAA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTAGAACATTCTGCCACTaGGTGAGGTCGTCTTTTACC +
Preference number: 5 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGRTFCH*VRSSFT
Trigger: GGTAAAAGACGACCTCACCAAGTGGCAGAATGTTCT...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCACAGCAGAGTAGCTTCTaGCTTCTGTATCAGCTCACG +
Preference number: 5 (lower is better)
Translates to: DQSTREAPLIFTPDGASSQQSSF*LLYQLT
Trigger: CGTGAGCTGATACAGAAGCAAGAAGCTACTCTGCTG...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp GCTTGGCAGATCGAATCCGCCCGATACTTGTATACATCTCAATGGTaGCATGGGACAAGTCCAGGTAGTGCTTTTCAAAGGCCTCTACTG +
Preference number: 5 (lower is better)
Translates to: AWQIESARYLYTSQW*HGTSPGSAFQRPLL
Trigger: CAGTAGAGGCCTTTGAAAAGCACTACCTGGACTTGTCCCATGCCACCATTGAGATGTATACAAGTATCGGGCGGATTCGATCTGCCAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp AGGACACTGTTCTCTGCTGTGTCTGTAGCTAGGCAGGACTGCCAAAGTCTGGTTAACTTGCCGAGGTTTTaGGTGAAAGACATGAGCAGC +
Preference number: 5 (lower is better)
Translates to: RTLFSAVSVARQDCQSLVNLPRF*VKDMSS
Trigger: GCTGCTCATGTCTTTCACCAAAAACCTCGGCAAGTT...AACCAGACTTTGGCAGTCCTGCCTAGCTACAGACACAGCAGAGAACAGTGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp AGGACACTGTTCTCTGCTGTGTCTGTAGCTAGGCAGGACTGCCAAAGTCTGGTTACTTTAGCTTTTCCATaGCATAGCTCCACAGCCCCA +
Preference number: 5 (lower is better)
Translates to: RTLFSAVSVARQDCQSLVTLAFP*HSSTAP
Trigger: TGGGGCTGTGGAGCTATGCAATGGAAAAGCTAAAGT...AACCAGACTTTGGCAGTCCTGCCTAGCTACAGACACAGCAGAGAACAGTGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp TCTGTCCTCTTTTCCCTCAAAGTCCGCATGTCATCCTCAAACTTGCCGAGGTTTCCAGGTGAATCATTTTaGGAGCTCGGCCATAAGACC +
Preference number: 5 (lower is better)
Translates to: SVLFSLKVRMSSSNLPRFPGESF*ELGHKT
Trigger: GGTCTTATGGCCGAGCTCCAAAAATGATTCACCTGG...AAACCTCGGCAAGTTTGAGGATGACATGCGGACTTTGAGGGAAAAGAGGACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR CAA 90 bp GCTTCTACAGATGGATCTTGTGATCTGCTGGGCATCCCAAGGCACAGAAGGGGTTTGAGATCTTCTGAGTaGGGCCCTTTTTCTGATACA +
Preference number: 5 (lower is better)
Translates to: ASTDGSCDLLGIPRHRRGLRSSE*GPFSDT
Trigger: TGTATCAGAAAAAGGGCCCAACTCAGAAGATCTCAA...ACCCCTTCTGTGCCTTGGGATGCCCAGCAGATCACAAGATCCATCTGTAGAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GTTGGAGTAGACCACGGCTCTGTTCTCTGCCTGACACAAGATGAGCATTGCTTCAAGGTGATGATTCCATaGGAAGTCTTGTGCTTGGTC +
Preference number: 5 (lower is better)
Translates to: VGVDHGSVLCLTQDEHCFKVMIP*EVLCLV
Trigger: GACCAAGCACAAGACTTCCAATGGAATCATCACCTT...GAAGCAATGCTCATCTTGTGTCAGGCAGAGAACAGAGCCGTGGTCTACTCCAAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217858.2
CDS-3UTR CAA 90 bp GATCAGAGCACAAGAGAGGCCCCTCTCATCTTCACTCCAGATGGAGCATCTTCATCTTTTACCGTAGCTTaGTACACTTCAGTATCGCAG +
Preference number: 5 (lower is better)
Translates to: DQSTREAPLIFTPDGASSSFTVA*YTSVSQ
Trigger: CTGCGATACTGAAGTGTACAAAGCTACGGTAAAAGA...TGAAGATGCTCCATCTGGAGTGAAGATGAGAGGGGCCTCTCTTGTGCTCTGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 90 bp CAGGTCTCTCGGCTCCTAGTCCTGCCAAAAGATCAACTGTTCTGTTaGGATCTTCTGAGTTGGGCCCTTTTTCTGATACAAGTCCACATA +
Preference number: 5 (lower is better)
Translates to: QVSRLLVLPKDQLFC*DLLSWALFLIQVHI
Trigger: TATGTGGACTTGTATCAGAAAAAGGGCCCAACTCAGAAGATCTCAACAGAACAGTTGATCTTTTGGCAGGACTAGGAGCCGAGAGACCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 90 bp GTGAATCATTTTTGGAGCTCGGCCATAAGACCTTCTCCATTCCATTaGTTCTCTTGGAAGCTGCTGGGAAAGTGTCGGATAAATGGAGGT +
Preference number: 5 (lower is better)
Translates to: VNHFWSSAIRPSPFH*FSWKLLGKCRINGG
Trigger: ACCTCCATTTATCCGACACTTTCCCAGCAGCTTCCAAGAGAACCAATGGAATGGAGAAGGTCTTATGGCCGAGCTCCAAAAATGATTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217980.2
CDS-3UTR CAA 90 bp CTCAAAGTCCGCATGTCATCCTCAAACTTGCCGAGGTTTTTGGTGAAAGACATGATTCCATTGGTTCTCTaGGAAGCTGCTGGGAAAGTG +
Preference number: 5 (lower is better)
Translates to: LKVRMSSSNLPRFLVKDMIPLVL*EAAGKV
Trigger: CACTTTCCCAGCAGCTTCCAAGAGAACCAATGGAAT...CATGTCTTTCACCAAAAACCTCGGCAAGTTTGAGGATGACATGCGGACTTTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217980.2
CDS-3UTR CAA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTAGCATGGACCACAGCATaGGGAGGGTCAAAATGGAGA +
Preference number: 5 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLAWTTA*GGSKWR
Trigger: TCTCCATTTTGACCCTCCCAATGCTGTGGTCCATGC...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS-3UTR CAA 90 bp GGAGCATCTTCAGTTCCAAGACTTAAGGTGCAAAAGATGTCGATTATACAGCTACCACACACAGCCCAATaGCTGCTGTTGTCCACAACT +
Preference number: 5 (lower is better)
Translates to: GASSVPRLKVQKMSIIQLPHTAQ*LLLSTT
Trigger: AGTTGTGGACAACAGCAGCAATTGGGCTGTGTGTGG...TAGCTGTATAATCGACATCTTTTGCACCTTAAGTCTTGGAACTGAAGATGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 90 bp TTGGCATCATTTTCAACTACCACTATTAGCCAGTCCACAGAGCTATaGGCTTTCAGAACATTCTGCCACTTGGTGAGGTCGTCTTTTACC +
Preference number: 5 (lower is better)
Translates to: LASFSTTTISQSTEL*AFRTFCHLVRSSFT
Trigger: GGTAAAAGACGACCTCACCAAGTGGCAGAATGTTCTGAAAGCTCATAGCTCTGTGGACTGGCTAATAGTGGTAGTTGAAAATGATGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp TCCTGCACACAGCTATGCAGCAGCTCCAGGGCGCGCTaGGCCACCTCCCAGGGCCGCTGTAGGAAGAGGAGC +
Preference number: 6 (lower is better)
Translates to: SCTQLCSSSRAR*ATSQGRCRKRS
Trigger: GCTCCTCTTCCTACAGCGGCCCTGGGAGGTGGCTCAGCGCGCCCTGGAGCTGCTGCATAGCTGTGTGCAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp CTATCTTGTTGGCGCCTGGCTGCAGGGTCACACTGCTaGACCTCAGCACGTGGGCCCCATCCTCCAGGGCCA +
Preference number: 6 (lower is better)
Translates to: LSCWRLAAGSHC*TSARGPHPPGP
Trigger: TGGCCCTGGAGGATGGGGCCCACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS GCA 72 bp AGGCTATCTTGTTGGCGCCTGGCTGCAGGGTCACACTaGTGCACCTCAGCACGTGGGCCCCATCCTCCAGGG +
Preference number: 6 (lower is better)
Translates to: RLSCWRLAAGSH*CTSARGPHPPG
Trigger: CCCTGGAGGATGGGGCCCACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS GCA 72 bp GCCTGGGTCTTGAAGGCTATCTTGTTGGCGCCTGGCTaGAGGGTCACACTGCTGCACCTCAGCACGTGGGCC +
Preference number: 6 (lower is better)
Translates to: AWVLKAILLAPG*RVTLLHLSTWA
Trigger: GGCCCACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS TCA 72 bp GTGGATGTGTGCCAGGACAAACCACACAGGGCCCACTaGGGCCCGAAGCTGCCGCAGCGTGTATGTTCCAGG +
Preference number: 6 (lower is better)
Translates to: VDVCQDKPHRAH*GPKLPQRVCSR
Trigger: CCTGGAACATACACGCTGCGGCAGCTTCGGGCCTCAGTGGGCCCTGTGTGGTTTGTCCTGGCACACATCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CAA 90 bp CCCACTGAGGCCCGAAGCTGCCGCAGCGTGTATGTTCCAGGTTCTTaGGCCTGGGTCTTGAAGGCTATCTTGTTGGCGCCTGGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: PTEARSCRSVYVPGS*AWVLKAILLAPGCR
Trigger: CCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACCTGGAACATACACGCTGCGGCAGCTTCGGGCCTCAGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CCA 72 bp TTTGGCCTGGGTCTTGAAGGCTATCTTGTTGGCGCCTaGCTGCAGGGTCACACTGCTGCACCTCAGCACGTG +
Preference number: 6 (lower is better)
Translates to: FGLGLEGYLVGA*LQGHTAAPQHV
Trigger: CACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CCA 72 bp AGCTCTCTGAGAATCCTTCTGCTTCCTGTGGAGCTCTaGTGTCCCCGGAACACTGGTGTCCCCGCCAGATGC +
Preference number: 6 (lower is better)
Translates to: SSLRILLLPVEL*CPRNTGVPARC
Trigger: GCATCTGGCGGGGACACCAGTGTTCCGGGGACACCAGAGCTCCACAGGAAGCAGAAGGATTCTCAGAGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 72 bp TACGCAGGTGCAGTGGGAAGACCGATGCTTGTGACCTaGTCAGAGGACTGGATCCGGAGCAGGGCAGTGGAG +
Preference number: 6 (lower is better)
Translates to: YAGAVGRPMLVT*SEDWIRSRAVE
Trigger: CTCCACTGCCCTGCTCCGGATCCAGTCCTCTGACAAGGTCACAAGCATCGGTCTTCCCACTGCACCTGCGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 90 bp CGAAGCTGCCGCAGCGTGTATGTTCCAGGTTCTTTGGCCTGGGTCTaGAAGGCTATCTTGTTGGCGCCTGGCTGCAGGGTCACACTGCTG +
Preference number: 6 (lower is better)
Translates to: RSCRSVYVPGSLAWV*KAILLAPGCRVTLL
Trigger: CAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACCTGGAACATACACGCTGCGGCAGCTTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CAA 90 bp GTGTATGTTCCAGGTTCTTTGGCCTGGGTCTTGAAGGCTATCTTGTaGGCGCCTGGCTGCAGGGTCACACTGCTGCACCTCAGCACGTGG +
Preference number: 6 (lower is better)
Translates to: VYVPGSLAWVLKAIL*APGCRVTLLHLSTW
Trigger: CCACGTGCTGAGGTGCAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACCTGGAACATACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CAA 90 bp AGCGTGTATGTTCCAGGTTCTTTGGCCTGGGTCTTGAAGGCTATCTaGTTGGCGCCTGGCTGCAGGGTCACACTGCTGCACCTCAGCACG +
Preference number: 6 (lower is better)
Translates to: SVYVPGSLAWVLKAI*LAPGCRVTLLHLST
Trigger: CGTGCTGAGGTGCAGCAGTGTGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACCTGGAACATACACGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CAA 90 bp ATCACGTGGTACGCAGGTGCAGTGGGAAGACCGATGCTTGTGACCTaGTCAGAGGACTGGATCCGGAGCAGGGCAGTGGAGCACTCTTCT +
Preference number: 6 (lower is better)
Translates to: ITWYAGAVGRPMLVT*SEDWIRSRAVEHSS
Trigger: AGAAGAGTGCTCCACTGCCCTGCTCCGGATCCAGTCCTCTGACAAGGTCACAAGCATCGGTCTTCCCACTGCACCTGCGTACCACGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 90 bp GGCTCCTGTGTCCACGTCAGCTCCCAGACAAAGAACACGGACTGCTaGCTGTGGATAAGCTGCTGGGACTGTGTGTTCAGAGGTGCCAGC +
Preference number: 6 (lower is better)
Translates to: GSCVHVSSQTKNTDC*LWISCWDCVFRGAS
Trigger: GCTGGCACCTCTGAACACACAGTCCCAGCAGCTTATCCACAGCAAGCAGTCCGTGTTCTTTGTCTGGGAGCTGACGTGGACACAGGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp AACATCTCCGACAACTCCAGAGCGGGCAGGCTGTTCTaGGATGCAGGGAACAGTGAGGCCTCAGCTGGGAAG +
Preference number: 6 (lower is better)
Translates to: NISDNSRAGRLF*DAGNSEASAGK
Trigger: CTTCCCAGCTGAGGCCTCACTGTTCCCTGCATCTCAGAACAGCCTGCCCGCTCTGGAGTTGTCGGAGATGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS TCA 72 bp CTGGATCCGGAGCAGGGCAGTGGAGCACTCTTCTCTTaGGTTGGAGTAGACCACGGCTCTGTTCTCTGCCTG +
Preference number: 6 (lower is better)
Translates to: LDPEQGSGALFS*VGVDHGSVLCL
Trigger: CAGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCCGGATCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp AGCTGCCGCAGCGTGTATGTTCCAGGTTCTTTGGCCTaGGTCTTGAAGGCTATCTTGTTGGCGCCTGGCTGC +
Preference number: 6 (lower is better)
Translates to: SCRSVYVPGSLA*VLKAILLAPGC
Trigger: GCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACCTGGAACATACACGCTGCGGCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CCA 72 bp GGGCTTCAAGGAAACGGTCAGCTGCTCTTCAGAAGCTaGGGAGAACCCCACAGAGAACTGGCAGTGCAGAGG +
Preference number: 6 (lower is better)
Translates to: GLQGNGQLLFRS*GEPHRELAVQR
Trigger: CCTCTGCACTGCCAGTTCTCTGTGGGGTTCTCCCCAGCTTCTGAAGAGCAGCTGACCGTTTCCTTGAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp AAGTCAGCCAGTTGGCACCATCCCCAGCTCCGAAGTTaGCCACGTACTGTGAGAAGAGGGCATCCAGCTCGT +
Preference number: 6 (lower is better)
Translates to: KSASWHHPQLRS*PRTVRRGHPAR
Trigger: ACGAGCTGGATGCCCTCTTCTCACAGTACGTGGTCAACTTCGGAGCTGGGGATGGTGCCAACTGGCTGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp GCAGCGTGTATGTTCCAGGTTCTTTGGCCTGGGTCTTaGAGGCTATCTTGTTGGCGCCTGGCTGCAGGGTCA +
Preference number: 6 (lower is better)
Translates to: AACMFQVLWPGS*RLSCWRLAAGS
Trigger: TGACCCTGCAGCCAGGCGCCAACAAGATAGCCTTCAAGACCCAGGCCAAAGAACCTGGAACATACACGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS GCA 72 bp TCCATTTGCCCAAGGTGTTTTTGGCACTCTGCTAGCTaGTTCCTTGTGTGTGTGACAGGCAGGGCCCAGCCC +
Preference number: 6 (lower is better)
Translates to: SICPRCFWHSAS*FLVCVTGRAQP
Trigger: GGGCTGGGCCCTGCCTGTCACACACACAAGGAAGCAGCTAGCAGAGTGCCAAAAACACCTTGGGCAAATGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 72 bp ACTGGATCCGGAGCAGGGCAGTGGAGCACTCTTCTCTaGAGTTGGAGTAGACCACGGCTCTGTTCTCTGCCT +
Preference number: 6 (lower is better)
Translates to: TGSGAGQWSTLL*SWSRPRLCSLP
Trigger: AGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCCGGATCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 90 bp TGTCAGAGGACTGGATCCGGAGCAGGGCAGTGGAGCACTCTTCTCTaGAGTTGGAGTAGACCACGGCTCTGTTCTCTGCCTGACACAAGA +
Preference number: 6 (lower is better)
Translates to: CQRTGSGAGQWSTLL*SWSRPRLCSLPDTR
Trigger: TCTTGTGTCAGGCAGAGAACAGAGCCGTGGTCTACTCCAACTCAAGAGAAGAGTGCTCCACTGCCCTGCTCCGGATCCAGTCCTCTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp CAGACAAAGAACACGGACTGCTTGCTGTGGATAAGCTaGTGGGACTGTGTGTTCAGAGGTGCCAGCCTCAGG +
Preference number: 6 (lower is better)
Translates to: QTKNTDCLLWIS*WDCVFRGASLR
Trigger: CCTGAGGCTGGCACCTCTGAACACACAGTCCCAGCAGCTTATCCACAGCAAGCAGTCCGTGTTCTTTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp TTGCATAGCTCCACAGCCCCACCATGTGGGCAATGTTaGAGTCTATCTGGGCCCGGTCACAGCAACCTTCTA +
Preference number: 6 (lower is better)
Translates to: LHSSTAPPCGQC*SLSGPGHSNLL
Trigger: TAGAAGGTTGCTGTGACCGGGCCCAGATAGACTCCAACATTGCCCACATGGTGGGGCTGTGGAGCTATGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp CCACAGTCAGGACACCACCCGCATGGACCACAGCATTaGGAGGGTCAAAATGGAGATCCTTCAGCCTTGCAA +
Preference number: 6 (lower is better)
Translates to: PQSGHHPHGPQH*EGQNGDPSALQ
Trigger: TTGCAAGGCTGAAGGATCTCCATTTTGACCCTCCCAATGCTGTGGTCCATGCGGGTGGTGTCCTGACTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp ACAGCAATCTGGTCCACGTGGACAGGGATGGGCATCTaGCTGCATACCGTTATCTCCACAGTCAGGACACCA +
Preference number: 6 (lower is better)
Translates to: TAIWSTWTGMGI*LHTVISTVRTP
Trigger: TGGTGTCCTGACTGTGGAGATAACGGTATGCAGCCAGATGCCCATCCCTGTCCACGTGGACCAGATTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp GTCAGCTCCCAGACAAAGAACACGGACTGCTTGCTGTaGATAAGCTGCTGGGACTGTGTGTTCAGAGGTGCC +
Preference number: 6 (lower is better)
Translates to: VSSQTKNTDCLL*ISCWDCVFRGA
Trigger: GGCACCTCTGAACACACAGTCCCAGCAGCTTATCCACAGCAAGCAGTCCGTGTTCTTTGTCTGGGAGCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 72 bp CATGGGCAGTACCACCTTGTGACCTGGGTTGTCCTCTaGCTGGCTGGCAAAGCTAAGGATCTCCTGGCAGAA +
Preference number: 6 (lower is better)
Translates to: HGQYHLVTWVVL*LAGKAKDLLAE
Trigger: TTCTGCCAGGAGATCCTTAGCTTTGCCAGCCAGCAAGAGGACAACCCAGGTCACAAGGTGGTACTGCCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 72 bp TCCACAGTCAGGACACCACCCGCATGGACCACAGCATaGGGAGGGTCAAAATGGAGATCCTTCAGCCTTGCA +
Preference number: 6 (lower is better)
Translates to: STVRTPPAWTTA*GGSKWRSFSLA
Trigger: TGCAAGGCTGAAGGATCTCCATTTTGACCCTCCCAATGCTGTGGTCCATGCGGGTGGTGTCCTGACTGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp GGAGCAGAGCGAGCCTGTCTTACAGTACTCAGCTCCTaGAGCAGGAAGGATCTCAGCTCTCACACTGTACAG +
Preference number: 6 (lower is better)
Translates to: GAERACLTVLSS*SRKDLSSHTVQ
Trigger: CTGTACAGTGTGAGAGCTGAGATCCTTCCTGCTTCAGGAGCTGAGTACTGTAAGACAGGCTCGCTCTGCTCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp TCTATCTGGGCCCGGTCACAGCAACCTTCTATCCTCTaGAGCACCTCTAGACAGCTCAGAAAGACCCAGCAA +
Preference number: 6 (lower is better)
Translates to: SIWARSQQPSIL*STSRQLRKTQQ
Trigger: TTGCTGGGTCTTTCTGAGCTGTCTAGAGGTGCTGCAGAGGATAGAAGGTTGCTGTGACCGGGCCCAGATAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp TGTGTCCACGTCAGCTCCCAGACAAAGAACACGGACTaGTTGCTGTGGATAAGCTGCTGGGACTGTGTGTTC +
Preference number: 6 (lower is better)
Translates to: CVHVSSQTKNTD*LLWISCWDCVF
Trigger: GAACACACAGTCCCAGCAGCTTATCCACAGCAAGCAGTCCGTGTTCTTTGTCTGGGAGCTGACGTGGACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp ACAAAGAACACGGACTGCTTGCTGTGGATAAGCTGCTaGGACTGTGTGTTCAGAGGTGCCAGCCTCAGGTCA +
Preference number: 6 (lower is better)
Translates to: TKNTDCLLWISC*DCVFRGASLRS
Trigger: TGACCTGAGGCTGGCACCTCTGAACACACAGTCCCAGCAGCTTATCCACAGCAAGCAGTCCGTGTTCTTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 90 bp CTGGCGGGAGAACAAGTAGCTTCGCAGGTCCAGCAGAGTAGCTTCTaGCTTCTGTATCAGCTCACGCTTCTCCATGTCTATAGGCTTGCG +
Preference number: 6 (lower is better)
Translates to: LAGEQVASQVQQSSF*LLYQLTLLHVYRLA
Trigger: CGCAAGCCTATAGACATGGAGAAGCGTGAGCTGATACAGAAGCAAGAAGCTACTCTGCTGGACCTGCGAAGCTACTTGTTCTCCCGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 90 bp TGCAAACTGCATGGGCAGTACCACCTTGTGACCTGGGTTGTCCTCTaGCTGGCTGGCAAAGCTAAGGATCTCCTGGCAGAAGTATTTCCG +
Preference number: 6 (lower is better)
Translates to: CKLHGQYHLVTWVVL*LAGKAKDLLAEVFP
Trigger: CGGAAATACTTCTGCCAGGAGATCCTTAGCTTTGCCAGCCAGCAAGAGGACAACCCAGGTCACAAGGTGGTACTGCCCATGCAGTTTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 90 bp ACCGTTATCTCCACAGTCAGGACACCACCCGCATGGACCACAGCATaGGGAGGGTCAAAATGGAGATCCTTCAGCCTTGCAAACTGCATG +
Preference number: 6 (lower is better)
Translates to: TVISTVRTPPAWTTA*GGSKWRSFSLANCM
Trigger: CATGCAGTTTGCAAGGCTGAAGGATCTCCATTTTGACCCTCCCAATGCTGTGGTCCATGCGGGTGGTGTCCTGACTGTGGAGATAACGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp AGCATTGGGAGGGTCAAAATGGAGATCCTTCAGCCTTaGAAACTGCATGGGCAGTACCACCTTGTGACCTGG +
Preference number: 6 (lower is better)
Translates to: SIGRVKMEILQP*KLHGQYHLVTW
Trigger: CCAGGTCACAAGGTGGTACTGCCCATGCAGTTTGCAAGGCTGAAGGATCTCCATTTTGACCCTCCCAATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp AGAGTGCTCGGTCCTGAAGGGCACACTGAATGTCAGTaGAATGACAGTGGAGTAGATAGACCACGGGCAATC +
Preference number: 6 (lower is better)
Translates to: RVLGPEGHTECQ*NDSGVDRPRAI
Trigger: GATTGCCCGTGGTCTATCTACTCCACTGTCATTGCACTGACATTCAGTGTGCCCTTCAGGACCGAGCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp TGCACATATTTTCGGGTTCCAGCAGACAGCAGAGAGTaGTCGGTCCTGAAGGGCACACTGAATGTCAGTGCA +
Preference number: 6 (lower is better)
Translates to: CTYFRVPADSRE*SVLKGTLNVSA
Trigger: TGCACTGACATTCAGTGTGCCCTTCAGGACCGAGCACTCTCTGCTGTCTGCTGGAACCCGAAAATATGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp GTCCTGAGTTTGGTCAGGAAGGCATTCCAGGATTCCTaGGTTCGAGAAGAGTCCTTCAAAGGGTCAGAGAGC +
Preference number: 6 (lower is better)
Translates to: VLSLVRKAFQDS*VREESFKGSES
Trigger: GCTCTCTGACCCTTTGAAGGACTCTTCTCGAACTCAGGAATCCTGGAATGCCTTCCTGACCAAACTCAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp TGTGTGTTCAGAGGTGCCAGCCTCAGGTCAGTAGCATaGCCCTTGTCTTCCAGATTACTGTCTGACAGCTCA +
Preference number: 6 (lower is better)
Translates to: CVFRGASLRSVA*PLSSRLLSDSS
Trigger: TGAGCTGTCAGACAGTAATCTGGAAGACAAGGGTCATGCTACTGACCTGAGGCTGGCACCTCTGAACACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp CCTCCTCTGTCAGGTGATGATCACTGGCCAGAAGACTaGTGGTCTGCAAGTAGTTTTCCATTTGCCCAAGGT +
Preference number: 6 (lower is better)
Translates to: PPLSGDDHWPED*WSASSFPFAQG
Trigger: ACCTTGGGCAAATGGAAAACTACTTGCAGACCAGCAGTCTTCTGGCCAGTGATCATCACCTGACAGAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp GGTCAAAATGGAGATCCTTCAGCCTTGCAAACTGCATaGGCAGTACCACCTTGTGACCTGGGTTGTCCTCTT +
Preference number: 6 (lower is better)
Translates to: GQNGDPSALQTA*AVPPCDLGCPL
Trigger: AAGAGGACAACCCAGGTCACAAGGTGGTACTGCCCATGCAGTTTGCAAGGCTGAAGGATCTCCATTTTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 72 bp CTCGGCCATAAGACCTTCTCCATTCCATTGGTTCTCTaGGAAGCTGCTGGGAAAGTGTCGGATAAATGGAGG +
Preference number: 6 (lower is better)
Translates to: LGHKTFSIPLVL*EAAGKVSDKWR
Trigger: CCTCCATTTATCCGACACTTTCCCAGCAGCTTCCAAGAGAACCAATGGAATGGAGAAGGTCTTATGGCCGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217980.2
CDS GCA 72 bp TCAAAGTCCAGTTCTGACAGGTTCTGGACACAGACTTaGACATATTTTCGGGTTCCAGCAGACAGCAGAGAG +
Preference number: 6 (lower is better)
Translates to: SKSSSDRFWTQT*TYFRVPADSRE
Trigger: CTCTCTGCTGTCTGCTGGAACCCGAAAATATGTGCAAGTCTGTGTCCAGAACCTGTCAGAACTGGACTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS GCA 72 bp AAGTTTTGTGGAAAAATAGTCCTCAGATTCCACGAGTaGTTCATCCTTGTCCACATCCAGGAGGTCGGCGAG +
Preference number: 6 (lower is better)
Translates to: KFCGKIVLRFHE*FILVHIQEVGE
Trigger: CTCGCCGACCTCCTGGATGTGGACAAGGATGAAGCACTCGTGGAATCTGAGGACTATTTTTCCACAAAACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp TCGGCCATAAGACCTTCTCCATTCCATTGGTTCTCTTaGAAGCTGCTGGGAAAGTGTCGGATAAATGGAGGT +
Preference number: 6 (lower is better)
Translates to: SAIRPSPFHWFS*KLLGKCRINGG
Trigger: ACCTCCATTTATCCGACACTTTCCCAGCAGCTTCCAAGAGAACCAATGGAATGGAGAAGGTCTTATGGCCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217980.2
CDS CCA 72 bp CTGTCTGACAGCTCAAAGTCCAGTTCTGACAGGTTCTaGACACAGACTTGCACATATTTTCGGGTTCCAGCA +
Preference number: 6 (lower is better)
Translates to: LSDSSKSSSDRF*TQTCTYFRVPA
Trigger: TGCTGGAACCCGAAAATATGTGCAAGTCTGTGTCCAGAACCTGTCAGAACTGGACTTTGAGCTGTCAGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 72 bp GAACAAGTAGCTTCGCAGGTCCAGCAGAGTAGCTTCTaGCTTCTGTATCAGCTCACGCTTCTCCATGTCTAT +
Preference number: 6 (lower is better)
Translates to: EQVASQVQQSSF*LLYQLTLLHVY
Trigger: ATAGACATGGAGAAGCGTGAGCTGATACAGAAGCAAGAAGCTACTCTGCTGGACCTGCGAAGCTACTTGTTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 72 bp TTCCAACAAGCTTGGCAGATCGAATCCGCCCGATACTaGTATACATCTCAATGGTGGCATGGGACAAGTCCA +
Preference number: 6 (lower is better)
Translates to: FQQAWQIESARY*YTSQWWHGTSP
Trigger: TGGACTTGTCCCATGCCACCATTGAGATGTATACAAGTATCGGGCGGATTCGATCTGCCAAGCTTGTTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CAA 90 bp GGTGAATCATTTTTGGAGCTCGGCCATAAGACCTTCTCCATTCCATaGGTTCTCTTGGAAGCTGCTGGGAAAGTGTCGGATAAATGGAGG +
Preference number: 6 (lower is better)
Translates to: GESFLELGHKTFSIP*VLLEAAGKVSDKWR
Trigger: CCTCCATTTATCCGACACTTTCCCAGCAGCTTCCAAGAGAACCAATGGAATGGAGAAGGTCTTATGGCCGAGCTCCAAAAATGATTCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217980.2
CDS CAA 90 bp TCAGGTCTCTCGGCTCCTAGTCCTGCCAAAAGATCAACTGTTCTGTaGAGATCTTCTGAGTTGGGCCCTTTTTCTGATACAAGTCCACAT +
Preference number: 6 (lower is better)
Translates to: SGLSAPSPAKRSTVL*RSSELGPFSDTSPH
Trigger: ATGTGGACTTGTATCAGAAAAAGGGCCCAACTCAGAAGATCTCAACAGAACAGTTGATCTTTTGGCAGGACTAGGAGCCGAGAGACCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp GGGCTTTGTTCCCTTCTTTGGGCAGCAGCTCCTCCTTaGACTGAACAAAGTTGGATTCCAGGTGAATCATTT +
Preference number: 6 (lower is better)
Translates to: GLCSLLWAAAPP*TEQSWIPGESF
Trigger: AAATGATTCACCTGGAATCCAACTTTGTTCAGTTCAAGGAGGAGCTGCTGCCCAAAGAAGGGAACAAAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217980.2
CDS TCA 72 bp GTGGACATTCCTACAGATAATGCCTGTGGTGTTCAATaGGTTATCAGAGGGGCTTCTCTCCAACATCTCCGA +
Preference number: 6 (lower is better)
Translates to: VDIPTDNACGVQ*VIRGASLQHLR
Trigger: TCGGAGATGTTGGAGAGAAGCCCCTCTGATAACTCATTGAACACCACAGGCATTATCTGTAGGAATGTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217858.2
CDS CAA 90 bp CCTAGTCCTGCCAAAAGATCAACTGTTCTGTTGAGATCTTCTGAGTaGGGCCCTTTTTCTGATACAAGTCCACATAGGTACCCTAAGGAC +
Preference number: 6 (lower is better)
Translates to: PSPAKRSTVLLRSSE*GPFSDTSPHRYPKD
Trigger: GTCCTTAGGGTACCTATGTGGACTTGTATCAGAAAAAGGGCCCAACTCAGAAGATCTCAACAGAACAGTTGATCTTTTGGCAGGACTAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp TTTTCAACTACCACTATTAGCCAGTCCACAGAGCTATaGGCTTTCAGAACATTCTGCCACTTGGTGAGGTCG +
Preference number: 6 (lower is better)
Translates to: FSTTTISQSTEL*AFRTFCHLVRS
Trigger: CGACCTCACCAAGTGGCAGAATGTTCTGAAAGCTCATAGCTCTGTGGACTGGCTAATAGTGGTAGTTGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS TCA 72 bp CGGCTCCTAGTCCTGCCAAAAGATCAACTGTTCTGTTaGGATCTTCTGAGTTGGGCCCTTTTTCTGATACAA +
Preference number: 6 (lower is better)
Translates to: RLLVLPKDQLFC*DLLSWALFLIQ
Trigger: TTGTATCAGAAAAAGGGCCCAACTCAGAAGATCTCAACAGAACAGTTGATCTTTTGGCAGGACTAGGAGCCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000384.8
CDS CCA 72 bp GAACTGAACAAAGTTGGATTCCAGGTGAATCATTTTTaGAGCTCGGCCATAAGACCTTCTCCATTCCATTGG +
Preference number: 6 (lower is better)
Translates to: ELNKVGFQVNHF*SSAIRPSPFHW
Trigger: CCAATGGAATGGAGAAGGTCTTATGGCCGAGCTCCAAAAATGATTCACCTGGAATCCAACTTTGTTCAGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000384.8
ENSMUST00000217980.2