Pregenerated sensors for TRAPPC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049299Ensembl transcript IDs: ENSMUST00000060956.13, ENSMUST00000102601.10, ENSMUST00000102602.8, ENSMUST00000108662.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGCTCTCGGAGACAGGTAGATGGAAGGGCTCTCAATGTAACAAGTaGGATGGGCCCAGGCAGTCACAGGTTCTTCTGAGGGGTGAGGTA | + |
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Preference number: 1 (lower is better) Translates to: KLSETGRWKGSQCNK*DGPRQSQVLLRGEV Trigger: TACCTCACCCCTCAGAAGAACCTGTGACTGCCTGGGCCCATCTCACTTGTTACATTGAGAGCCCTTCCATCTACCTGTCTCCGAGAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| 3UTR-3UTR TCA 90 bp | TATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGTCTCAATGTAACAAGTaGGATGGGCCCAGGCAGTCA | + |
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Preference number: 2 (lower is better) Translates to: YDLKAVGGRPSGESSRRQSQCNK*DGPRQS Trigger: TGACTGCCTGGGCCCATCTCACTTGTTACATTGAGA...CTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| 3UTR-3UTR TCA 90 bp | GGCGTAGACTCCTGTGAGCTTCATTCTTATGACTTGAAGGCAGTGGGTGGTAGGTCTCAATGTAACAAGTaGGATGGGCCCAGGCAGTCA | + |
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Preference number: 2 (lower is better) Translates to: GVDSCELHSYDLKAVGGRSQCNK*DGPRQS Trigger: TGACTGCCTGGGCCCATCTCACTTGTTACATTGAGA...CCTACCACCCACTGCCTTCAAGTCATAAGAATGAAGCTCACAGGAGTCTACGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| 3UTR-3UTR TCA 90 bp | GTTTATTCTGTGTTTCTCACAGAGTCAAGCAGGGATAAAACTGGCGTAGACTCCTCTCAATGTAACAAGTaGGATGGGCCCAGGCAGTCA | + |
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Preference number: 2 (lower is better) Translates to: VYSVFLTESSRDKTGVDSSQCNK*DGPRQS Trigger: TGACTGCCTGGGCCCATCTCACTTGTTACATTGAGA...GGAGTCTACGCCAGTTTTATCCCTGCTTGACTCTGTGAGAAACACAGAATAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| 3UTR TCA 72 bp | GAGACAGGTAGATGGAAGGGCTCTCAATGTAACAAGTaGGATGGGCCCAGGCAGTCACAGGTTCTTCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: ETGRWKGSQCNK*DGPRQSQVLLR Trigger: CCTCAGAAGAACCTGTGACTGCCTGGGCCCATCTCACTTGTTACATTGAGAGCCCTTCCATCTACCTGTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | AAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGGTAGATGGATTAGGGATCCCTGCTTaGTTCTTGCGGTGCCACTCG | + |
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Preference number: 4 (lower is better) Translates to: KAVGGRPSGESSRRQVDGLGIPA*FLRCHS Trigger: CGAGTGGCACCGCAAGAAGCAAGCAGGGATCCCTAA...TCCATCTACCTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR TCA 90 bp | AAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGGTAGATGGAGCGGGGACATCTTGCTaGCAAACGAACGAATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: KAVGGRPSGESSRRQVDGAGTSC*QTNEWR Trigger: TCTCCATTCGTTCGTTTGTCAGCAAGATGTCCCCGC...TCCATCTACCTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | TATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGTCCCTGCTTGCTTCTTaGGGTGCCACTCGCTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: YDLKAVGGRPSGESSRRQSLLAS*GATRCS Trigger: ACTACAGCGAGTGGCACCGCAAGAAGCAAGCAGGGA...CTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | TATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGTTAGGGATCCCTGCTTaGTTCTTGCGGTGCCACTCG | + |
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Preference number: 4 (lower is better) Translates to: YDLKAVGGRPSGESSRRQLGIPA*FLRCHS Trigger: CGAGTGGCACCGCAAGAAGCAAGCAGGGATCCCTAA...CTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | TCTTATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGATCCCTGCTTGCTTCTTaGGGTGCCACTCGCTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: SYDLKAVGGRPSGESSRRSLLAS*GATRCS Trigger: ACTACAGCGAGTGGCACCGCAAGAAGCAAGCAGGGA...TCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | TATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGTTCCTTAGGGATCCCTaGTTGCTTCTTGCGGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: YDLKAVGGRPSGESSRRQFLRDP*LLLAVP Trigger: TGGCACCGCAAGAAGCAAGCAGGGATCCCTAAGGAA...CTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | TTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGGTAGATCGAAAGAGCTCACTTTaGACAGTTTGTCCCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: LKAVGGRPSGESSRRQVDRKSSL*TVCPSG Trigger: CCCGCTGGGACAAACTGTGCAAAGTGAGCTCTTTCG...ATCTACCTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | TCTTATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGATTCCTTAGGGATCCCTaGTTGCTTCTTGCGGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: SYDLKAVGGRPSGESSRRFLRDP*LLLAVP Trigger: TGGCACCGCAAGAAGCAAGCAGGGATCCCTAAGGAA...TCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | TCTTATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACGAAAGAGCTCACTTTaGACAGTTTGTCCCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: SYDLKAVGGRPSGESSRRRKSSL*TVCPSG Trigger: CCCGCTGGGACAAACTGTGCAAAGTGAGCTCTTTCG...TCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR TCA 90 bp | ACTGGCGTAGACTCCTGTGAGCTTCATTCTTATGACTTGAAGGCAGTGGGTGGTGCGGGGACATCTTGCTaGCAAACGAACGAATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: TGVDSCELHSYDLKAVGGAGTSC*QTNEWR Trigger: TCTCCATTCGTTCGTTTGTCAGCAAGATGTCCCCGC...ACCACCCACTGCCTTCAAGTCATAAGAATGAAGCTCACAGGAGTCTACGCCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | ACTGGCGTAGACTCCTGTGAGCTTCATTCTTATGACTTGAAGGCAGTGGGTGGTTTCCTTAGGGATCCCTaGTTGCTTCTTGCGGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: TGVDSCELHSYDLKAVGGFLRDP*LLLAVP Trigger: TGGCACCGCAAGAAGCAAGCAGGGATCCCTAAGGAA...ACCACCCACTGCCTTCAAGTCATAAGAATGAAGCTCACAGGAGTCTACGCCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR GCA 90 bp | GTTTATTCTGTGTTTCTCACAGAGTCAAGCAGGGATAAAACTGGCGTAGACTCCTCCCTGCTTGCTTCTTaGGGTGCCACTCGCTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: VYSVFLTESSRDKTGVDSSLLAS*GATRCS Trigger: ACTACAGCGAGTGGCACCGCAAGAAGCAAGCAGGGA...GGAGTCTACGCCAGTTTTATCCCTGCTTGACTCTGTGAGAAACACAGAATAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR TCA 90 bp | GTTTATTCTGTGTTTCTCACAGAGTCAAGCAGGGATAAAACTGGCGTAGACTCCGCGGGGACATCTTGCTaGCAAACGAACGAATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: VYSVFLTESSRDKTGVDSAGTSC*QTNEWR Trigger: TCTCCATTCGTTCGTTTGTCAGCAAGATGTCCCCGC...GGAGTCTACGCCAGTTTTATCCCTGCTTGACTCTGTGAGAAACACAGAATAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGGTAGATCTCACTTTGCACAGTTaGTCCCAGCGGGCACAGAGG | + |
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Preference number: 5 (lower is better) Translates to: LKAVGGRPSGESSRRQVDLTLHS*SQRAQR Trigger: CCTCTGTGCCCGCTGGGACAAACTGTGCAAAGTGAG...ATCTACCTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | TCTTATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACTTAGGGATCCCTGCTaGCTTCTTGCGGTGCCACTC | + |
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Preference number: 5 (lower is better) Translates to: SYDLKAVGGRPSGESSRRLRDPC*LLAVPL Trigger: GAGTGGCACCGCAAGAAGCAAGCAGGGATCCCTAAG...TCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATAAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | AAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGGTAGATGGATCGAAAGAGCTCACTTaGCACAGTTTGTCCCAGCGG | + |
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Preference number: 5 (lower is better) Translates to: KAVGGRPSGESSRRQVDGSKELT*HSLSQR Trigger: CCGCTGGGACAAACTGTGCAAAGTGAGCTCTTTCGA...TCCATCTACCTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | TATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGTCGAAAGAGCTCACTTaGCACAGTTTGTCCCAGCGG | + |
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Preference number: 5 (lower is better) Translates to: YDLKAVGGRPSGESSRRQSKELT*HSLSQR Trigger: CCGCTGGGACAAACTGTGCAAAGTGAGCTCTTTCGA...CTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | ACTGGCGTAGACTCCTGTGAGCTTCATTCTTATGACTTGAAGGCAGTGGGTGGTCTTAGGGATCCCTGCTaGCTTCTTGCGGTGCCACTC | + |
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Preference number: 5 (lower is better) Translates to: TGVDSCELHSYDLKAVGGLRDPC*LLAVPL Trigger: GAGTGGCACCGCAAGAAGCAAGCAGGGATCCCTAAG...ACCACCCACTGCCTTCAAGTCATAAGAATGAAGCTCACAGGAGTCTACGCCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | TCTTATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGATCTAGCGGGGACATCTaGCTGACAAACGAACGAATG | + |
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Preference number: 5 (lower is better) Translates to: SYDLKAVGGRPSGESSRRSSGDI*LTNERM Trigger: CATTCGTTCGTTTGTCAGCAAGATGTCCCCGCTAGA...TCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | TATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGACAGGTATTCATGACAACCTaGATTCCAGTGGGAGTCTCG | + |
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Preference number: 5 (lower is better) Translates to: YDLKAVGGRPSGESSRRQVFMTT*IPVGVS Trigger: CGAGACTCCCACTGGAATCAAGGTTGTCATGAATAC...CTGTCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | TCTTATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGAGTATTCATGACAACCTaGATTCCAGTGGGAGTCTCG | + |
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Preference number: 5 (lower is better) Translates to: SYDLKAVGGRPSGESSRRVFMTT*IPVGVS Trigger: CGAGACTCCCACTGGAATCAAGGTTGTCATGAATAC...TCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATAAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | GGCGTAGACTCCTGTGAGCTTCATTCTTATGACTTGAAGGCAGTGGGTGGTAGGTCTAGCGGGGACATCTaGCTGACAAACGAACGAATG | + |
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Preference number: 5 (lower is better) Translates to: GVDSCELHSYDLKAVGGRSSGDI*LTNERM Trigger: CATTCGTTCGTTTGTCAGCAAGATGTCCCCGCTAGA...CCTACCACCCACTGCCTTCAAGTCATAAGAATGAAGCTCACAGGAGTCTACGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | ACTGGCGTAGACTCCTGTGAGCTTCATTCTTATGACTTGAAGGCAGTGGGTGGTTCTAGCGGGGACATCTaGCTGACAAACGAACGAATG | + |
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Preference number: 5 (lower is better) Translates to: TGVDSCELHSYDLKAVGGSSGDI*LTNERM Trigger: CATTCGTTCGTTTGTCAGCAAGATGTCCCCGCTAGA...ACCACCCACTGCCTTCAAGTCATAAGAATGAAGCTCACAGGAGTCTACGCCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | TCTTATGACTTGAAGGCAGTGGGTGGTAGGCCTTCGGGGGAAAGCTCTCGGAGATTTGTAACGGCTAGTTaGGAAAGACAGAAAGCCATC | + |
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Preference number: 5 (lower is better) Translates to: SYDLKAVGGRPSGESSRRFVTAS*ERQKAI Trigger: GATGGCTTTCTGTCTTTCCAAACTAGCCGTTACAAA...TCTCCGAGAGCTTTCCCCCGAAGGCCTACCACCCACTGCCTTCAAGTCATAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 |
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| CDS-3UTR CAA 90 bp | GATAAAACTGGCGTAGACTCCTGTGAGCTTCATTCTTATGACTTGAAGGCAGTGCTCACTTTGCACAGTTaGTCCCAGCGGGCACAGAGG | + |
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Preference number: 5 (lower is better) Translates to: DKTGVDSCELHSYDLKAVLTLHS*SQRAQR Trigger: CCTCTGTGCCCGCTGGGACAAACTGTGCAAAGTGAG...CACTGCCTTCAAGTCATAAGAATGAAGCTCACAGGAGTCTACGCCAGTTTTATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | GTTTATTCTGTGTTTCTCACAGAGTCAAGCAGGGATAAAACTGGCGTAGACTCCTCGAAAGAGCTCACTTaGCACAGTTTGTCCCAGCGG | + |
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Preference number: 5 (lower is better) Translates to: VYSVFLTESSRDKTGVDSSKELT*HSLSQR Trigger: CCGCTGGGACAAACTGTGCAAAGTGAGCTCTTTCGA...GGAGTCTACGCCAGTTTTATCCCTGCTTGACTCTGTGAGAAACACAGAATAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | GATAAAACTGGCGTAGACTCCTGTGAGCTTCATTCTTATGACTTGAAGGCAGTGGTATTCATGACAACCTaGATTCCAGTGGGAGTCTCG | + |
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Preference number: 5 (lower is better) Translates to: DKTGVDSCELHSYDLKAVVFMTT*IPVGVS Trigger: CGAGACTCCCACTGGAATCAAGGTTGTCATGAATAC...CACTGCCTTCAAGTCATAAGAATGAAGCTCACAGGAGTCTACGCCAGTTTTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 ENSMUST00000108662.2 |
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| CDS-3UTR CAA 90 bp | GTTTATTCTGTGTTTCTCACAGAGTCAAGCAGGGATAAAACTGGCGTAGACTCCTTTGTAACGGCTAGTTaGGAAAGACAGAAAGCCATC | + |
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Preference number: 5 (lower is better) Translates to: VYSVFLTESSRDKTGVDSFVTAS*ERQKAI Trigger: GATGGCTTTCTGTCTTTCCAAACTAGCCGTTACAAA...GGAGTCTACGCCAGTTTTATCCCTGCTTGACTCTGTGAGAAACACAGAATAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102601.10 ENSMUST00000102602.8 |
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| CDS CAA 72 bp | GACAGAAAGCCATCCTTCATGTCTAGCGGGGACATCTaGCTGACAAACGAACGAATGGAGAAGAGCATTCCA | + |
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Preference number: 6 (lower is better) Translates to: DRKPSFMSSGDI*LTNERMEKSIP Trigger: TGGAATGCTCTTCTCCATTCGTTCGTTTGTCAGCAAGATGTCCCCGCTAGACATGAAGGATGGCTTTCTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000060956.13 ENSMUST00000102601.10 ENSMUST00000102602.8 |
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| CDS CAA 90 bp | GTTTGGAAAGACAGAAAGCCATCCTTCATGTCTAGCGGGGACATCTaGCTGACAAACGAACGAATGGAGAAGAGCATTCCATACATCAGC | + |
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Preference number: 6 (lower is better) Translates to: VWKDRKPSFMSSGDI*LTNERMEKSIPYIS Trigger: GCTGATGTATGGAATGCTCTTCTCCATTCGTTCGTTTGTCAGCAAGATGTCCCCGCTAGACATGAAGGATGGCTTTCTGTCTTTCCAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000060956.13 ENSMUST00000102601.10 ENSMUST00000102602.8 |
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