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Pregenerated sensors for TRAP1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051257

Ensembl transcript IDs: ENSMUST00000054534.4

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp AAAACAACCACTTCTTCCGCTGTCCATTTCTTTCTTCTGGGCTTTGCAACTGCACCACCTGAGCCACTGTaGGCTTTGTCTGGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: KTTTSSAVHFFLLGFATAPPEPL*ALSGFL
Trigger: CAAGAAGCCAGACAAAGCCCACAGTGGCTCAGGTGG...TGCAGTTGCAAAGCCCAGAAGAAAGAAATGGACAGCGGAAGAAGTGGTTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR CCA 90 bp AAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATCTTTGCATAATGAACTTTGCGCTTGCTTTGCCTaGCTATCCAGGCCACATCCC +
Preference number: 4 (lower is better)
Translates to: KVHHAVRSLLVTSLHNELCACFA*LSRPHP
Trigger: GGGATGTGGCCTGGATAGCCAGGCAAAGCAAGCGCA...AAGTTCATTATGCAAAGATGTCACCAACAGACTTCTGACTGCATGGTGAACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR GCA 90 bp AAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATCTTTGCATAATGAACTTCATCGACAGAGGACATaGGCTTGCTTTGCCTGGCTA +
Preference number: 4 (lower is better)
Translates to: KVHHAVRSLLVTSLHNELHRQRT*ACFAWL
Trigger: TAGCCAGGCAAAGCAAGCGCATGTCCTCTGTCGATG...AAGTTCATTATGCAAAGATGTCACCAACAGACTTCTGACTGCATGGTGAACTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR TCA 90 bp TATGTATCATATGAAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATCTTTCCAGAAAACTTGTTGTaGCAACAGCGAAGACCAGCC +
Preference number: 4 (lower is better)
Translates to: YVSYESSPCSQKSVGDIFPENLL*QQRRPA
Trigger: GGCTGGTCTTCGCTGTTGTCACAACAAGTTTTCTGG...AAAGATGTCACCAACAGACTTCTGACTGCATGGTGAACTTTCATATGATACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR GCA 90 bp AAAACAACCACTTCTTCCGCTGTCCATTTCTTTCTTCTGGGCTTTGCAACTGCATTCTTCCTCTTCCATTaGAACCTCTTCATCAGCATT +
Preference number: 4 (lower is better)
Translates to: KTTTSSAVHFFLLGFATAFFLFH*NLFISI
Trigger: AATGCTGATGAAGAGGTTGCAATGGAAGAGGAAGAA...TGCAGTTGCAAAGCCCAGAAGAAAGAAATGGACAGCGGAAGAAGTGGTTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR TCA 90 bp AATCCTATGTATCATATGAAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATTCGGCCTCATCTTCTaGTTCATCATCCATCAGGTT +
Preference number: 4 (lower is better)
Translates to: NPMYHMKVHHAVRSLLVTFGLIF*FIIHQV
Trigger: AACCTGATGGATGATGAATCAGAAGATGAGGCCGAA...TGTCACCAACAGACTTCTGACTGCATGGTGAACTTTCATATGATACATAGGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR TCA 90 bp AAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATCTTTGCATAATGAACTTTCATTCTTCCTTAAATaGTGGCCAGGAACACAGGCA +
Preference number: 4 (lower is better)
Translates to: KVHHAVRSLLVTSLHNELSFFLK*WPGTQA
Trigger: TGCCTGTGTTCCTGGCCATCATTTAAGGAAGAATGA...AAGTTCATTATGCAAAGATGTCACCAACAGACTTCTGACTGCATGGTGAACTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR GCA 90 bp AATCCTATGTATCATATGAAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACAACCGGTGCAATAAATTaGACCTATTCCCATCACCGT +
Preference number: 4 (lower is better)
Translates to: NPMYHMKVHHAVRSLLVTTGAIN*TYSHHR
Trigger: ACGGTGATGGGAATAGGTGCAATTTATTGCACCGGT...TGTCACCAACAGACTTCTGACTGCATGGTGAACTTTCATATGATACATAGGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS GCA 90 bp TTCCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTTCCATTaGAACCTCTTCATCAGCATTTTCACACCTACACTCCATTTGTTC +
Preference number: 5 (lower is better)
Translates to: FLFLLLLLFFFFLFH*NLFISIFTPTLHLF
Trigger: GAACAAATGGAGTGTAGGTGTGAAAATGCTGATGAAGAGGTTGCAATGGAAGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR CAA 90 bp AAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATCTTTGCATAATGAACTTACAGAGGACATGCGCTaGCTTTGCCTGGCTATCCAG +
Preference number: 5 (lower is better)
Translates to: KVHHAVRSLLVTSLHNELTEDMR*LCLAIQ
Trigger: CTGGATAGCCAGGCAAAGCAAGCGCATGTCCTCTGT...AAGTTCATTATGCAAAGATGTCACCAACAGACTTCTGACTGCATGGTGAACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR CAA 90 bp TATGTATCATATGAAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATCTTTGAGCCACTGTGGGCTTaGTCTGGCTTCTTGTTATCA +
Preference number: 5 (lower is better)
Translates to: YVSYESSPCSQKSVGDIFEPLWA*SGFLLS
Trigger: TGATAACAAGAAGCCAGACAAAGCCCACAGTGGCTC...AAAGATGTCACCAACAGACTTCTGACTGCATGGTGAACTTTCATATGATACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR CAA 90 bp AAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATCTTTGCATAATGAACTTTACCGGTGCAATAAATaGCACCTATTCCCATCACCG +
Preference number: 5 (lower is better)
Translates to: KVHHAVRSLLVTSLHNELYRCNK*HLFPSP
Trigger: CGGTGATGGGAATAGGTGCAATTTATTGCACCGGTA...AAGTTCATTATGCAAAGATGTCACCAACAGACTTCTGACTGCATGGTGAACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS-3UTR CAA 90 bp AAAGTTCACCATGCAGTCAGAAGTCTGTTGGTGACATCTTTGCATAATGAACTTACACCTACACTCCATTaGTTCCTTAGGGTTCACTGG +
Preference number: 5 (lower is better)
Translates to: KVHHAVRSLLVTSLHNELTPTLH*FLRVHW
Trigger: CCAGTGAACCCTAAGGAACAAATGGAGTGTAGGTGT...AAGTTCATTATGCAAAGATGTCACCAACAGACTTCTGACTGCATGGTGAACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS GCA 72 bp CATCCTCATCGTCTTCATCCTCATCGACAGAGGACATaGGCTTGCTTTGCCTGGCTATCCAGGCCACATCCC +
Preference number: 6 (lower is better)
Translates to: HPHRLHPHRQRT*ACFAWLSRPHP
Trigger: GGGATGTGGCCTGGATAGCCAGGCAAAGCAAGCGCATGTCCTCTGTCGATGAGGATGAAGACGATGAGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS CCA 72 bp CATCCTCATCGACAGAGGACATGCGCTTGCTTTGCCTaGCTATCCAGGCCACATCCCTTTCATACTGCTCCT +
Preference number: 6 (lower is better)
Translates to: HPHRQRTCACFA*LSRPHPFHTAP
Trigger: AGGAGCAGTATGAAAGGGATGTGGCCTGGATAGCCAGGCAAAGCAAGCGCATGTCCTCTGTCGATGAGGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS GCA 72 bp CATCGTCTTCATCCTCATCGACAGAGGACATGCGCTTaGTTTGCCTGGCTATCCAGGCCACATCCCTTTCAT +
Preference number: 6 (lower is better)
Translates to: HRLHPHRQRTCA*FAWLSRPHPFH
Trigger: ATGAAAGGGATGTGGCCTGGATAGCCAGGCAAAGCAAGCGCATGTCCTCTGTCGATGAGGATGAAGACGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS CAA 72 bp GTCTTCATCCTCATCGACAGAGGACATGCGCTTGCTTaGCCTGGCTATCCAGGCCACATCCCTTTCATACTG +
Preference number: 6 (lower is better)
Translates to: VFILIDRGHALA*PGYPGHIPFIL
Trigger: CAGTATGAAAGGGATGTGGCCTGGATAGCCAGGCAAAGCAAGCGCATGTCCTCTGTCGATGAGGATGAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS CAA 72 bp TCATCGTCTTCATCCTCATCGACAGAGGACATGCGCTaGCTTTGCCTGGCTATCCAGGCCACATCCCTTTCA +
Preference number: 6 (lower is better)
Translates to: SSSSSSSTEDMR*LCLAIQATSLS
Trigger: TGAAAGGGATGTGGCCTGGATAGCCAGGCAAAGCAAGCGCATGTCCTCTGTCGATGAGGATGAAGACGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS CAA 90 bp ATCCTCATCGTCTTCATCCTCATCGACAGAGGACATGCGCTTGCTTaGCCTGGCTATCCAGGCCACATCCCTTTCATACTGCTCCTCATA +
Preference number: 6 (lower is better)
Translates to: ILIVFILIDRGHALA*PGYPGHIPFILLLI
Trigger: TATGAGGAGCAGTATGAAAGGGATGTGGCCTGGATAGCCAGGCAAAGCAAGCGCATGTCCTCTGTCGATGAGGATGAAGACGATGAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS GCA 72 bp GCAGAATTTCTTCCAGGGAGTACCGGTGCAATAAATTaGACCTATTCCCATCACCGTCACCACCTGAGCCAC +
Preference number: 6 (lower is better)
Translates to: AEFLPGSTGAIN*TYSHHRHHLSH
Trigger: GTGGCTCAGGTGGTGACGGTGATGGGAATAGGTGCAATTTATTGCACCGGTACTCCCTGGAAGAAATTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS CAA 72 bp GGCAGAATTTCTTCCAGGGAGTACCGGTGCAATAAATaGCACCTATTCCCATCACCGTCACCACCTGAGCCA +
Preference number: 6 (lower is better)
Translates to: GRISSREYRCNK*HLFPSPSPPEP
Trigger: TGGCTCAGGTGGTGACGGTGATGGGAATAGGTGCAATTTATTGCACCGGTACTCCCTGGAAGAAATTCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS TCA 72 bp CATTTCCACGCTCATCTCTTCTTCGGCCTCATCTTCTaGTTCATCATCCATCAGGTTCTCCAATTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: HFHAHLFFGLIF*FIIHQVLQFFF
Trigger: GAAGAAGAATTGGAGAACCTGATGGATGATGAATCAGAAGATGAGGCCGAAGAAGAGATGAGCGTGGAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4
CDS CAA 72 bp AACCTCTTCATCAGCATTTTCACACCTACACTCCATTaGTTCCTTAGGGTTCACTGGTATAGACACCAGGAA +
Preference number: 6 (lower is better)
Translates to: NLFISIFTPTLH*FLRVHWYRHQE
Trigger: TTCCTGGTGTCTATACCAGTGAACCCTAAGGAACAAATGGAGTGTAGGTGTGAAAATGCTGATGAAGAGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054534.4