RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRAM1L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044528

Ensembl transcript IDs: ENSMUST00000058994.6

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAGCTGAAGCCAGGCACCGACCCCAGGAGTATCGTGTCAGCAGATaGGTTAAGGAGACGCGTTGCTTTGGGTTTCAGGTTTGCTTCTTC +
Preference number: 1 (lower is better)
Translates to: TAEARHRPQEYRVSR*VKETRCFGFQVCFF
Trigger: GAAGAAGCAAACCTGAAACCCAAAGCAACGCGTCTCCTTAACTCATCTGCTGACACGATACTCCTGGGGTCGGTGCCTGGCTTCAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR CCA 90 bp AATGCAGGGAGCATACAGGCTTCACCCAGGGTGCTGTCCACTACCCTATCCCTGCCACATAGCAAGGAGTaGATTCCCTTGGAGGTAAGA +
Preference number: 2 (lower is better)
Translates to: NAGSIQASPRVLSTTLSLPHSKE*IPLEVR
Trigger: TCTTACCTCCAAGGGAATCCACTCCTTGCTATGTGG...CAGGGATAGGGTAGTGGACAGCACCCTGGGTGAAGCCTGTATGCTCCCTGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR GCA 90 bp TTTCCCTTTTCCACCAGCGAAGCAAACAGCACAGCTGAAGCCAGGCACCGACCCAGGTTTGCTTCTTCTTaGCAGAACACTGAAGAAATC +
Preference number: 2 (lower is better)
Translates to: FPFSTSEANSTAEARHRPRFASS*QNTEEI
Trigger: GATTTCTTCAGTGTTCTGGCAAGAAGAAGCAAACCT...GGGTCGGTGCCTGGCTTCAGCTGTGCTGTTTGCTTCGCTGGTGGAAAAGGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR CAA 90 bp CCCAGGAGTATCGTGTCAGCAGATGAGTTAAGGAGACGCGTTGCTTaGGGTTTCAGGTTTGCTTCTTCTTGCCAGAACACTGAAGAAATC +
Preference number: 2 (lower is better)
Translates to: PRSIVSADELRRRVA*GFRFASSCQNTEEI
Trigger: GATTTCTTCAGTGTTCTGGCAAGAAGAAGCAAACCTGAAACCCAAAGCAACGCGTCTCCTTAACTCATCTGCTGACACGATACTCCTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR TCA 90 bp CTCAGCATGGGGATTGAGCCAGGTGTAAATACTTACCTCAGAGTCCATTGTTTGATCAATGTTTCCCAATaGAGGGCAGAAGCTACACTA +
Preference number: 2 (lower is better)
Translates to: LSMGIEPGVNTYLRVHCLINVSQ*RAEATL
Trigger: TAGTGTAGCTTCTGCCCTTCATTGGGAAACATTGAT...CAAACAATGGACTCTGAGGTAAGTATTTACACCTGGCTCAATCCCCATGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR GCA 90 bp GGAAAACCACTTCCATGTCCAGAAAGAAAGAAATCTTTGTTACTTACCTTTGAAAGGCTTCACCCAGGGTaGTGTCCACTACCCTATCCC +
Preference number: 2 (lower is better)
Translates to: GKPLPCPERKKSLLLTFERLHPG*CPLPYP
Trigger: GGGATAGGGTAGTGGACAGCACCCTGGGTGAAGCCT...TTCAAAGGTAAGTAACAAAGATTTCTTTCTTTCTGGACATGGAAGTGGTTTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR TCA 90 bp CCTAAGATGCCATCACAAGCAGAGATGAGAGGCATGAGAAGAAACTGTAGAAAACATACTTTGGGGGTTTaGCAAATACTTTCCATTGTA +
Preference number: 2 (lower is better)
Translates to: PKMPSQAEMRGMRRNCRKHTLGV*QILSIV
Trigger: TACAATGGAAAGTATTTGTCAAACCCCCAAAGTATG...TTTTCTACAGTTTCTTCTCATGCCTCTCATCTCTGCTTGTGATGGCATCTTAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR CCA 90 bp ATCACCTTGTATCAATGTTTCCCAATGAAGGGCAGAAGCTACACTAACAGCACCTGCGATAAAGAACACTaGAAGCAGGAAACTATTATT +
Preference number: 2 (lower is better)
Translates to: ITLYQCFPMKGRSYTNSTCDKEH*KQETII
Trigger: AATAATAGTTTCCTGCTTCCAGTGTTCTTTATCGCA...GGTGCTGTTAGTGTAGCTTCTGCCCTTCATTGGGAAACATTGATACAAGGTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR CCA 90 bp GGAAAACCACTTCCATGTCCAGAAAGAAAGAAATCTTTGTTACTTACCTTTGAATCCTGCAAGAGAACATaGAGAAAACCACTTTGCTGC +
Preference number: 2 (lower is better)
Translates to: GKPLPCPERKKSLLLTFESCKRT*RKPLCC
Trigger: GCAGCAAAGTGGTTTTCTCCATGTTCTCTTGCAGGA...TTCAAAGGTAAGTAACAAAGATTTCTTTCTTTCTGGACATGGAAGTGGTTTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR GCA 90 bp CCAATGAAGGGCAGAAGCTACACTAACAGCACCATTCTAAAATCCATTCATAAATTTTCCACTTTATCCTaGAAGAGAACATGGAGAAAA +
Preference number: 2 (lower is better)
Translates to: PMKGRSYTNSTILKSIHKFSTLS*KRTWRK
Trigger: TTTTCTCCATGTTCTCTTGCAGGATAAAGTGGAAAA...TTTATGAATGGATTTTAGAATGGTGCTGTTAGTGTAGCTTCTGCCCTTCATTGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR TCA 72 bp GCCAGGCACCGACCCCAGGAGTATCGTGTCAGCAGATaGGTTAAGGAGACGCGTTGCTTTGGGTTTCAGGTT +
Preference number: 3 (lower is better)
Translates to: ARHRPQEYRVSR*VKETRCFGFQV
Trigger: AACCTGAAACCCAAAGCAACGCGTCTCCTTAACTCATCTGCTGACACGATACTCCTGGGGTCGGTGCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR CAA 90 bp TTTTCCACCAGCGAAGCAAACAGCACAGCTGAAGCCAGGCACCGACCCCAGGAGCTTTGGGTTTCAGGTTaGCTTCTTCTTGCCAGAACA +
Preference number: 3 (lower is better)
Translates to: FSTSEANSTAEARHRPQELWVSG*LLLART
Trigger: TGTTCTGGCAAGAAGAAGCAAACCTGAAACCCAAAG...CTCCTGGGGTCGGTGCCTGGCTTCAGCTGTGCTGTTTGCTTCGCTGGTGGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR CAA 90 bp AATGCAGGGAGCATACAGGCTTCACCCAGGGTGCTGTCCACTACCCTATCCCTGTTACCTCAGAGTCCATaGTTTGTCTTGGCTTCTGTA +
Preference number: 3 (lower is better)
Translates to: NAGSIQASPRVLSTTLSLLPQSP*FVLASV
Trigger: TACAGAAGCCAAGACAAACAATGGACTCTGAGGTAA...CAGGGATAGGGTAGTGGACAGCACCCTGGGTGAAGCCTGTATGCTCCCTGCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR TCA 72 bp AGGCTTCACCCAGGGTGCTGTCCACTACCCTATCCCTaGAAAGCAAAAACACCCACACTGTGGAAAGGAACT +
Preference number: 3 (lower is better)
Translates to: RLHPGCCPLPYP*KAKTPTLWKGT
Trigger: AGTTCCTTTCCACAGTGTGGGTGTTTTTGCTTTTCAGGGATAGGGTAGTGGACAGCACCCTGGGTGAAGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR TCA 72 bp ACACCCACACTGTGGAAAGGAACTCAGCATGGGGATTaGGCCAGGTGTAAATACTTACCTCAGAGTCCATTG +
Preference number: 3 (lower is better)
Translates to: TPTLWKGTQHGD*ARCKYLPQSPL
Trigger: CAATGGACTCTGAGGTAAGTATTTACACCTGGCTCAATCCCCATGCTGAGTTCCTTTCCACAGTGTGGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR CAA 90 bp GTCCACTACCCTATCCCTGAAAAGCAAAAACACCCACACTGTGGAAAGGAACTCATGAACAAGATCACCTaGTATCAATGTTTCCCAATG +
Preference number: 3 (lower is better)
Translates to: VHYPIPEKQKHPHCGKELMNKIT*YQCFPM
Trigger: CATTGGGAAACATTGATACAAGGTGATCTTGTTCAT...GAGTTCCTTTCCACAGTGTGGGTGTTTTTGCTTTTCAGGGATAGGGTAGTGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR TCA 72 bp TGTCAATATCACCACACATGTCATCTATTCGGAGTTTaGTGCTTTAATGGGGGCATAGCACTAGCAGTCACT +
Preference number: 3 (lower is better)
Translates to: CQYHHTCHLFGV*CFNGGIALAVT
Trigger: AGTGACTGCTAGTGCTATGCCCCCATTAAAGCATCAAACTCCGAATAGATGACATGTGTGGTGATATTGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR-3UTR CAA 90 bp ATCACCTTGTATCAATGTTTCCCAATGAAGGGCAGAAGCTACACTAACAGCACCACATACTTTGGGGGTTaGACAAATACTTTCCATTGT +
Preference number: 3 (lower is better)
Translates to: ITLYQCFPMKGRSYTNSTTYFGG*TNTFHC
Trigger: ACAATGGAAAGTATTTGTCAAACCCCCAAAGTATGT...GGTGCTGTTAGTGTAGCTTCTGCCCTTCATTGGGAAACATTGATACAAGGTGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR GCA 72 bp CTGGAAGCAGGAAACTATTATTTATACACACAATTCTaGAGTCATCACCACGAAACGTTTGGACAATCGTTG +
Preference number: 3 (lower is better)
Translates to: LEAGNYYLYTQF*SHHHETFGQSL
Trigger: CAACGATTGTCCAAACGTTTCGTGGTGATGACTGCAGAATTGTGTGTATAAATAATAGTTTCCTGCTTCCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR TCA 72 bp GAAATATGTGTGAGAGTTCTGAGTCATATGAAAAGTTaGAATTTGGCTTTACAACTGCATACCAGGTGGCAA +
Preference number: 3 (lower is better)
Translates to: EICVRVLSHMKS*NLALQLHTRWQ
Trigger: TTGCCACCTGGTATGCAGTTGTAAAGCCAAATTTCAACTTTTCATATGACTCAGAACTCTCACACATATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR TCA 90 bp ATCACCTTGTATCAATGTTTCCCAATGAAGGGCAGAAGCTACACTAACAGCACCCAAGAGTGTAGGGTCTaGCAGGCAGTTCTCAGAGGC +
Preference number: 4 (lower is better)
Translates to: ITLYQCFPMKGRSYTNSTQECRV*QAVLRG
Trigger: GCCTCTGAGAACTGCCTGTCAGACCCTACACTCTTG...GGTGCTGTTAGTGTAGCTTCTGCCCTTCATTGGGAAACATTGATACAAGGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR GCA 90 bp CTCAGCATGGGGATTGAGCCAGGTGTAAATACTTACCTCAGAGTCCATTGTTTGCAAAGTAAAGCAGGCTaGACACGCTGGAGAGGAGCT +
Preference number: 4 (lower is better)
Translates to: LSMGIEPGVNTYLRVHCLQSKAG*TRWRGA
Trigger: AGCTCCTCTCCAGCGTGTGCAGCCTGCTTTACTTTG...CAAACAATGGACTCTGAGGTAAGTATTTACACCTGGCTCAATCCCCATGCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR GCA 90 bp CCTAAGATGCCATCACAAGCAGAGATGAGAGGCATGAGAAGAAACTGTAGAAAACCAGCACGAAGAACATaGCCACGCAGGAGACCATAT +
Preference number: 4 (lower is better)
Translates to: PKMPSQAEMRGMRRNCRKPARRT*PRRRPY
Trigger: ATATGGTCTCCTGCGTGGGCATGTTCTTCGTGCTGG...TTTTCTACAGTTTCTTCTCATGCCTCTCATCTCTGCTTGTGATGGCATCTTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR GCA 90 bp ATCACCTTGTATCAATGTTTCCCAATGAAGGGCAGAAGCTACACTAACAGCACCTTGCCTTTGGTGAGCTaGAGTCTCCTGCTGAGCTTA +
Preference number: 4 (lower is better)
Translates to: ITLYQCFPMKGRSYTNSTLPLVS*SLLLSL
Trigger: TAAGCTCAGCAGGAGACTGCAGCTCACCAAAGGCAA...GGTGCTGTTAGTGTAGCTTCTGCCCTTCATTGGGAAACATTGATACAAGGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR GCA 90 bp CCTAAGATGCCATCACAAGCAGAGATGAGAGGCATGAGAAGAAACTGTAGAAAACCACTCCATTTTCTGTaGCTTTTCTCGCCCTGGACC +
Preference number: 4 (lower is better)
Translates to: PKMPSQAEMRGMRRNCRKPLHFL*LFSPWT
Trigger: GGTCCAGGGCGAGAAAAGGCACAGAAAATGGAGTGG...TTTTCTACAGTTTCTTCTCATGCCTCTCATCTCTGCTTGTGATGGCATCTTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR CCA 90 bp GGAAAACCACTTCCATGTCCAGAAAGAAAGAAATCTTTGTTACTTACCTTTGAAGCAGGCTGCACACGCTaGAGAGGAGCTCTACGGCGT +
Preference number: 4 (lower is better)
Translates to: GKPLPCPERKKSLLLTFEAGCTR*RGALRR
Trigger: ACGCCGTAGAGCTCCTCTCCAGCGTGTGCAGCCTGC...TTCAAAGGTAAGTAACAAAGATTTCTTTCTTTCTGGACATGGAAGTGGTTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR CAA 72 bp ATCGTGTCAGCAGATGAGTTAAGGAGACGCGTTGCTTaGGGTTTCAGGTTTGCTTCTTCTTGCCAGAACACT +
Preference number: 4 (lower is better)
Translates to: IVSADELRRRVA*GFRFASSCQNT
Trigger: AGTGTTCTGGCAAGAAGAAGCAAACCTGAAACCCAAAGCAACGCGTCTCCTTAACTCATCTGCTGACACGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR TCA 90 bp CTCAGCATGGGGATTGAGCCAGGTGTAAATACTTACCTCAGAGTCCATTGTTTGGGATATCTTGCTTCCTaGCTTTCTGGAAGTAAAGCT +
Preference number: 4 (lower is better)
Translates to: LSMGIEPGVNTYLRVHCLGYLAS*LSGSKA
Trigger: AGCTTTACTTCCAGAAAGTCAGGAAGCAAGATATCC...CAAACAATGGACTCTGAGGTAAGTATTTACACCTGGCTCAATCCCCATGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR TCA 90 bp TTGCTTTGGGTTTCAGGTTTGCTTCTTCTTGCCAGAACACTGAAGAAATCAAACTCTTCTAACCATCTCTaGAGCCAGACAGTAGTCAAG +
Preference number: 4 (lower is better)
Translates to: LLWVSGLLLLARTLKKSNSSNHL*SQTVVK
Trigger: CTTGACTACTGTCTGGCTTCAGAGATGGTTAGAAGA...GTTTGATTTCTTCAGTGTTCTGGCAAGAAGAAGCAAACCTGAAACCCAAAGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR TCA 90 bp CATGTCCAGAAAGAAAGAAATCTTTGTTACTTACCTTTGAAAGAAGACAGGGTAATCATGTTGTGGGGCTaGGACTTCCACAAGAGTGTA +
Preference number: 4 (lower is better)
Translates to: HVQKERNLCYLPLKEDRVIMLWG*DFHKSV
Trigger: TACACTCTTGTGGAAGTCTCAGCCCCACAACATGAT...TACCCTGTCTTCTTTCAAAGGTAAGTAACAAAGATTTCTTTCTTTCTGGACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR CCA 90 bp TTGCTTTGGGTTTCAGGTTTGCTTCTTCTTGCCAGAACACTGAAGAAATCAAACCTCTTTCTTCTTTGGTaGAGAGTCTATTCTATTCGG +
Preference number: 4 (lower is better)
Translates to: LLWVSGLLLLARTLKKSNLFLLW*RVYSIR
Trigger: CCGAATAGAATAGACTCTCCACCAAAGAAGAAAGAG...GTTTGATTTCTTCAGTGTTCTGGCAAGAAGAAGCAAACCTGAAACCCAAAGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
3UTR CAA 72 bp ATTCATATGTACACATGTATAATGAACAAGATCACCTaGTATCAATGTTTCCCAATGAAGGGCAGAAGCTAC +
Preference number: 4 (lower is better)
Translates to: IHMYTCIMNKIT*YQCFPMKGRSY
Trigger: GTAGCTTCTGCCCTTCATTGGGAAACATTGATACAAGGTGATCTTGTTCATTATACATGTGTACATATGAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 90 bp GTCCTGGACCCGGAGGGCAGCCCTTCCGCTGGGACAACGACTCCATaGTGCAGAGTGAGGAACGCGATCGACATCTCGGAGGTGCCCTCG +
Preference number: 5 (lower is better)
Translates to: VLDPEGSPSAGTTTP*CRVRNAIDISEVPS
Trigger: CGAGGGCACCTCCGAGATGTCGATCGCGTTCCTCACTCTGCAGCATGGAGTCGTTGTCCCAGCGGAAGGGCTGCCCTCCGGGTCCAGGAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 90 bp CTGGACCCGGAGGGCAGCCCTTCCGCTGGGACAACGACTCCATGCTaGAGAGTGAGGAACGCGATCGACATCTCGGAGGTGCCCTCGAAC +
Preference number: 5 (lower is better)
Translates to: LDPEGSPSAGTTTPC*RVRNAIDISEVPSN
Trigger: GTTCGAGGGCACCTCCGAGATGTCGATCGCGTTCCTCACTCTGCAGCATGGAGTCGTTGTCCCAGCGGAAGGGCTGCCCTCCGGGTCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CCA 90 bp CTTTCTGGTACCGCTCATCACCAAAGTAAAGCAGGCTGCACACGCTaGAGAGGAGCTCTACGGCGTAGTGCAGCATCAGCAGCAGCAGGC +
Preference number: 5 (lower is better)
Translates to: LSGTAHHQSKAGCTR*RGALRRSAASAAAG
Trigger: GCCTGCTGCTGCTGATGCTGCACTACGCCGTAGAGCTCCTCTCCAGCGTGTGCAGCCTGCTTTACTTTGGTGATGAGCGGTACCAGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 90 bp GAGACAACCCTTTCTGGTACCGCTCATCACCAAAGTAAAGCAGGCTaGACACGCTGGAGAGGAGCTCTACGGCGTAGTGCAGCATCAGCA +
Preference number: 5 (lower is better)
Translates to: ETTLSGTAHHQSKAG*TRWRGALRRSAASA
Trigger: TGCTGATGCTGCACTACGCCGTAGAGCTCCTCTCCAGCGTGTGCAGCCTGCTTTACTTTGGTGATGAGCGGTACCAGAAAGGGTTGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR CAA 90 bp TTTTCCACCAGCGAAGCAAACAGCACAGCTGAAGCCAGGCACCGACCCCAGGAGTTAGCTGCCAGCACATaGACATTACCAGAGAGTGCA +
Preference number: 5 (lower is better)
Translates to: FSTSEANSTAEARHRPQELAAST*TLPESA
Trigger: TGCACTCTCTGGTAATGTCAATGTGCTGGCAGCTAA...CTCCTGGGGTCGGTGCCTGGCTTCAGCTGTGCTGTTTGCTTCGCTGGTGGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS TCA 90 bp TGTCATCATGTTGTGGGGCTGAGACTTCCACAAGAGTGTAGGGTCTaGCAGGCAGTTCTCAGAGGCCAGAATGATCATGCCCCAGATCCC +
Preference number: 5 (lower is better)
Translates to: CHHVVGLRLPQECRV*QAVLRGQNDHAPDP
Trigger: GGGATCTGGGGCATGATCATTCTGGCCTCTGAGAACTGCCTGTCAGACCCTACACTCTTGTGGAAGTCTCAGCCCCACAACATGATGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 90 bp CAGAACAGCGATTTTAGCTGCCAGCACATTGACATTACCAGAGAGTaGATTGCCATTCCGATTTGTCCCGGCCAGGTGAAGCCCTACTGT +
Preference number: 5 (lower is better)
Translates to: QNSDFSCQHIDITRE*IAIPICPGQVKPYC
Trigger: ACAGTAGGGCTTCACCTGGCCGGGACAAATCGGAATGGCAATGCACTCTCTGGTAATGTCAATGTGCTGGCAGCTAAAATCGCTGTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR CAA 90 bp TTTTCCACCAGCGAAGCAAACAGCACAGCTGAAGCCAGGCACCGACCCCAGGAGCCTTCTCTTTCTTCTTaGGTGGAGAGTCTATTCTAT +
Preference number: 5 (lower is better)
Translates to: FSTSEANSTAEARHRPQEPSLSS*VESLFY
Trigger: ATAGAATAGACTCTCCACCAAAGAAGAAAGAGAAGG...CTCCTGGGGTCGGTGCCTGGCTTCAGCTGTGCTGTTTGCTTCGCTGGTGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 90 bp GTACACCTGGATACTGCAACTCGAGGACAGAACAGCGATTTTAGCTaGCAGCACATTGACATTACCAGAGAGTGCATTGCCATTCCGATT +
Preference number: 5 (lower is better)
Translates to: VHLDTATRGQNSDFS*QHIDITRECIAIPI
Trigger: AATCGGAATGGCAATGCACTCTCTGGTAATGTCAATGTGCTGGCAGCTAAAATCGCTGTTCTGTCCTCGAGTTGCAGTATCCAGGTGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CCA 90 bp TTCTATTCGGATTCTCCACTCCATTTTCTGTGCCTTTTCTCGCCCTaGACCGTCTCTTCCTTCCACAAACATGAAGGTTCGCGTCTTCTA +
Preference number: 5 (lower is better)
Translates to: FYSDSPLHFLCLFSP*TVSSFHKHEGSRLL
Trigger: TAGAAGACGCGAACCTTCATGTTTGTGGAAGGAAGAGACGGTCCAGGGCGAGAAAAGGCACAGAAAATGGAGTGGAGAATCCGAATAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 90 bp TTGGTGGAGAGTCTATTCTATTCGGATTCTCCACTCCATTTTCTGTaGCTTTTCTCGCCCTGGACCGTCTCTTCCTTCCACAAACATGAA +
Preference number: 5 (lower is better)
Translates to: LVESLFYSDSPLHFL*LFSPWTVSSFHKHE
Trigger: TTCATGTTTGTGGAAGGAAGAGACGGTCCAGGGCGAGAAAAGGCACAGAAAATGGAGTGGAGAATCCGAATAGAATAGACTCTCCACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR CAA 90 bp CTCAGCATGGGGATTGAGCCAGGTGTAAATACTTACCTCAGAGTCCATTGTTTGCTCATTCAGTTTGTTTaGTTTGCCTTTGGTGAGCTG +
Preference number: 5 (lower is better)
Translates to: LSMGIEPGVNTYLRVHCLLIQFV*FAFGEL
Trigger: CAGCTCACCAAAGGCAAACAAAACAAACTGAATGAG...CAAACAATGGACTCTGAGGTAAGTATTTACACCTGGCTCAATCCCCATGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR CAA 90 bp CCTAAGATGCCATCACAAGCAGAGATGAGAGGCATGAGAAGAAACTGTAGAAAACCGGCCTCATTCAGTTaGTTTTGTTTGCCTTTGGTG +
Preference number: 5 (lower is better)
Translates to: PKMPSQAEMRGMRRNCRKPASFS*FCLPLV
Trigger: CACCAAAGGCAAACAAAACAAACTGAATGAGGCCGG...TTTTCTACAGTTTCTTCTCATGCCTCTCATCTCTGCTTGTGATGGCATCTTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS-3UTR CAA 90 bp TTTATCCTGCAAGAGAACATGGAGAAAACCACTTTGCTGCCAGACTTGTTAATGTTGTTTTGTTTGCCTTaGGTGAGCTGCAGTCTCCTG +
Preference number: 5 (lower is better)
Translates to: FILQENMEKTTLLPDLLMLFCLP*VSCSLL
Trigger: CAGGAGACTGCAGCTCACCAAAGGCAAACAAAACAA...CATTAACAAGTCTGGCAGCAAAGTGGTTTTCTCCATGTTCTCTTGCAGGATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CCA 72 bp GTACAGGGTCCTGGACCCGGAGGGCAGCCCTTCCGCTaGGACAACGACTCCATGCTGCAGAGTGAGGAACGC +
Preference number: 6 (lower is better)
Translates to: VQGPGPGGQPFR*DNDSMLQSEER
Trigger: GCGTTCCTCACTCTGCAGCATGGAGTCGTTGTCCCAGCGGAAGGGCTGCCCTCCGGGTCCAGGACCCTGTAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 72 bp CCGGAGGGCAGCCCTTCCGCTGGGACAACGACTCCATaGTGCAGAGTGAGGAACGCGATCGACATCTCGGAG +
Preference number: 6 (lower is better)
Translates to: PEGSPSAGTTTP*CRVRNAIDISE
Trigger: CTCCGAGATGTCGATCGCGTTCCTCACTCTGCAGCATGGAGTCGTTGTCCCAGCGGAAGGGCTGCCCTCCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 72 bp GAGGGCAGCCCTTCCGCTGGGACAACGACTCCATGCTaGAGAGTGAGGAACGCGATCGACATCTCGGAGGTG +
Preference number: 6 (lower is better)
Translates to: EGSPSAGTTTPC*RVRNAIDISEV
Trigger: CACCTCCGAGATGTCGATCGCGTTCCTCACTCTGCAGCATGGAGTCGTTGTCCCAGCGGAAGGGCTGCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 72 bp CTTTCTGGTACCGCTCATCACCAAAGTAAAGCAGGCTaGACACGCTGGAGAGGAGCTCTACGGCGTAGTGCA +
Preference number: 6 (lower is better)
Translates to: LSGTAHHQSKAG*TRWRGALRRSA
Trigger: TGCACTACGCCGTAGAGCTCCTCTCCAGCGTGTGCAGCCTGCTTTACTTTGGTGATGAGCGGTACCAGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS TCA 72 bp GTTGTGGGGCTGAGACTTCCACAAGAGTGTAGGGTCTaGCAGGCAGTTCTCAGAGGCCAGAATGATCATGCC +
Preference number: 6 (lower is better)
Translates to: VVGLRLPQECRV*QAVLRGQNDHA
Trigger: GGCATGATCATTCTGGCCTCTGAGAACTGCCTGTCAGACCCTACACTCTTGTGGAAGTCTCAGCCCCACAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CAA 72 bp GAACACACTCAGCTGCCCGGCCTCATTCAGTTTGTTTaGTTTGCCTTTGGTGAGCTGCAGTCTCCTGCTGAG +
Preference number: 6 (lower is better)
Translates to: EHTQLPGLIQFV*FAFGELQSPAE
Trigger: CTCAGCAGGAGACTGCAGCTCACCAAAGGCAAACAAAACAAACTGAATGAGGCCGGGCAGCTGAGTGTGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CAA 72 bp ACACTCAGCTGCCCGGCCTCATTCAGTTTGTTTTGTTaGCCTTTGGTGAGCTGCAGTCTCCTGCTGAGCTTA +
Preference number: 6 (lower is better)
Translates to: TLSCPASFSLFC*PLVSCSLLLSL
Trigger: TAAGCTCAGCAGGAGACTGCAGCTCACCAAAGGCAAACAAAACAAACTGAATGAGGCCGGGCAGCTGAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CAA 90 bp ATACTGCAACTCGAGGACAGAACAGCGATTTTAGCTGCCAGCACATaGACATTACCAGAGAGTGCATTGCCATTCCGATTTGTCCCGGCC +
Preference number: 6 (lower is better)
Translates to: ILQLEDRTAILAAST*TLPESALPFRFVPA
Trigger: GGCCGGGACAAATCGGAATGGCAATGCACTCTCTGGTAATGTCAATGTGCTGGCAGCTAAAATCGCTGTTCTGTCCTCGAGTTGCAGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 72 bp GATTTTAGCTGCCAGCACATTGACATTACCAGAGAGTaGATTGCCATTCCGATTTGTCCCGGCCAGGTGAAG +
Preference number: 6 (lower is better)
Translates to: DFSCQHIDITRE*IAIPICPGQVK
Trigger: CTTCACCTGGCCGGGACAAATCGGAATGGCAATGCACTCTCTGGTAATGTCAATGTGCTGGCAGCTAAAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CCA 72 bp GATTCTCCACTCCATTTTCTGTGCCTTTTCTCGCCCTaGACCGTCTCTTCCTTCCACAAACATGAAGGTTCG +
Preference number: 6 (lower is better)
Translates to: DSPLHFLCLFSP*TVSSFHKHEGS
Trigger: CGAACCTTCATGTTTGTGGAAGGAAGAGACGGTCCAGGGCGAGAAAAGGCACAGAAAATGGAGTGGAGAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 72 bp GATACTGCAACTCGAGGACAGAACAGCGATTTTAGCTaGCAGCACATTGACATTACCAGAGAGTGCATTGCC +
Preference number: 6 (lower is better)
Translates to: DTATRGQNSDFS*QHIDITRECIA
Trigger: GGCAATGCACTCTCTGGTAATGTCAATGTGCTGGCAGCTAAAATCGCTGTTCTGTCCTCGAGTTGCAGTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS GCA 72 bp AGTCTATTCTATTCGGATTCTCCACTCCATTTTCTGTaGCTTTTCTCGCCCTGGACCGTCTCTTCCTTCCAC +
Preference number: 6 (lower is better)
Translates to: SLFYSDSPLHFL*LFSPWTVSSFH
Trigger: GTGGAAGGAAGAGACGGTCCAGGGCGAGAAAAGGCACAGAAAATGGAGTGGAGAATCCGAATAGAATAGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CAA 72 bp CTCGAGGACAGAACAGCGATTTTAGCTGCCAGCACATaGACATTACCAGAGAGTGCATTGCCATTCCGATTT +
Preference number: 6 (lower is better)
Translates to: LEDRTAILAAST*TLPESALPFRF
Trigger: AAATCGGAATGGCAATGCACTCTCTGGTAATGTCAATGTGCTGGCAGCTAAAATCGCTGTTCTGTCCTCGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6
CDS CCA 72 bp AGCCAGACAGTAGTCAAGGTCCATGTTATGTACACCTaGATACTGCAACTCGAGGACAGAACAGCGATTTTA +
Preference number: 6 (lower is better)
Translates to: SQTVVKVHVMYT*ILQLEDRTAIL
Trigger: TAAAATCGCTGTTCTGTCCTCGAGTTGCAGTATCCAGGTGTACATAACATGGACCTTGACTACTGTCTGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058994.6