Pregenerated sensors for TRAM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025935Ensembl transcript IDs: ENSMUST00000027068.11, ENSMUST00000188377.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTTTAGCTGGTGACAGAGTGAGAAACGATGGAGCATGTATGTGCTaGACAACAGTGGACAGACCAAGCGCAGGGTGCGAGGACAAGCAT | + |
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Preference number: 1 (lower is better) Translates to: FLAGDRVRNDGACMC*TTVDRPSAGCEDKH Trigger: ATGCTTGTCCTCGCACCCTGCGCTTGGTCTGTCCACTGTTGTTCAGCACATACATGCTCCATCGTTTCTCACTCTGTCACCAGCTAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR CCA 90 bp | GCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATaGCAACTTAACCACAGGCCTGAGGCTTGTGGCTTCTATAGTCAA | + |
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Preference number: 1 (lower is better) Translates to: AGKRLEKRKHDFLAA*QLNHRPEACGFYSQ Trigger: TTGACTATAGAAGCCACAAGCCTCAGGCCTGTGGTTAAGTTGCCATGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR TCA 90 bp | ACTCCAATGGATGGCAATAAATCTTGCAGTAGCCATCAGTACTTTTaGATGGGATGTAACATGTACAGCCACAACTTAGAAAATAAAGCA | + |
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Preference number: 1 (lower is better) Translates to: TPMDGNKSCSSHQYF*MGCNMYSHNLENKA Trigger: TGCTTTATTTTCTAAGTTGTGGCTGTACATGTTACATCCCATTCAAAAGTACTGATGGCTACTGCAAGATTTATTGCCATCCATTGGAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR-3UTR CCA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGATGTGCTGAACAACAGTaGACAGACCAAGCGCAGGGT | + |
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Preference number: 2 (lower is better) Translates to: CSRERLLSQEAGKRLEKRCAEQQ*TDQAQG Trigger: ACCCTGCGCTTGGTCTGTCCACTGTTGTTCAGCACA...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR-3UTR GCA 90 bp | TCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATTATCCTCCCCTCAATaGCCTTTACGATGCAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: SQEAGKRLEKRKHDFLAALSSPQ*PLRCRN Trigger: GTTCCTGCATCGTAAAGGGCATTGAGGGGAGGATAA...TGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR-3UTR TCA 90 bp | GAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATGGCAATGTTCTCACTCAGAGTaGTTATCCTCCCCTCAATGC | + |
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Preference number: 2 (lower is better) Translates to: EAGKRLEKRKHDFLAAWQCSHSE*LSSPQC Trigger: GCATTGAGGGGAGGATAATCACTCTGAGTGAGAACA...TTGCCATGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR-3UTR CCA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAATCAGTACTTTTGAATaGGATGTAACATGTACAGCC | + |
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Preference number: 2 (lower is better) Translates to: CSRERLLSQEAGKRLEKRISTFE*DVTCTA Trigger: GGCTGTACATGTTACATCCCATTCAAAAGTACTGAT...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR-3UTR CCA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAAAGAGAAAAGAAAGGTaGTCCCTAAACTATTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: CSRERLLSQEAGKRLEKRKRKER*SLNYSE Trigger: TTCAGAATAGTTTAGGGACCACCTTTCTTTTCTCTT...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR-3UTR GCA 90 bp | TTCGGAGATGAGAATGAACGTGCCCCACACACAGGCAAAAAGGTAGAATGCACTTCGTTAAACTTGCTGTaGTTCGTTTTGGAGAAGTGC | + |
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Preference number: 2 (lower is better) Translates to: FGDENERAPHTGKKVECTSLNLL*FVLEKC Trigger: GCACTTCTCCAAAACGAAGCACAGCAAGTTTAACGA...AGTGCATTCTACCTTTTTGCCTGTGTGTGGGGCACGTTCATTCTCATCTCCGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000188377.2 |
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| 3UTR-3UTR TCA 90 bp | AAATTGGTGAGAGCAAGAAAAATGTTCACTGGTTATGCAGGGGTTTGTAAATGGGTCCCTAAACTATTCTaGAGGCAGGTAGCTGAGTCT | + |
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Preference number: 2 (lower is better) Translates to: KLVRARKMFTGYAGVCKWVPKLF*RQVAES Trigger: AGACTCAGCTACCTGCCTTCAGAATAGTTTAGGGAC...CCATTTACAAACCCCTGCATAACCAGTGAACATTTTTCTTGCTCTCACCAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR CCA 72 bp | CGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATaGCAACTTAACCACAGGCCTGAGGCTTGTGGCTTC | + |
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Preference number: 3 (lower is better) Translates to: RLEKRKHDFLAA*QLNHRPEACGF Trigger: GAAGCCACAAGCCTCAGGCCTGTGGTTAAGTTGCCATGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR-3UTR CAA 90 bp | GATGAGAATGAACGTGCCCCACACACAGGCAAAAAGGTAGAATGCACTGAGCTGTTGCTGTGCTTCGTTTaGGAGAAGTGCATCCGTCGG | + |
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Preference number: 3 (lower is better) Translates to: DENERAPHTGKKVECTELLLCFV*EKCIRR Trigger: CCGACGGATGCACTTCTCCAAAACGAAGCACAGCAA...CAGCTCAGTGCATTCTACCTTTTTGCCTGTGTGTGGGGCACGTTCATTCTCATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188377.2 |
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| 3UTR-3UTR CAA 90 bp | TTCGGAGATGAGAATGAACGTGCCCCACACACAGGCAAAAAGGTAGAATGCACTCCAGACTCGTTAAACTaGCTGTGCTTCGTTTTGGAG | + |
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Preference number: 3 (lower is better) Translates to: FGDENERAPHTGKKVECTPDSLN*LCFVLE Trigger: CTCCAAAACGAAGCACAGCAAGTTTAACGAGTCTGG...AGTGCATTCTACCTTTTTGCCTGTGTGTGGGGCACGTTCATTCTCATCTCCGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000188377.2 |
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| 3UTR-3UTR CAA 90 bp | GAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATGGCAACAGAAAGCAGATTCTTaGGGGACAATAATCAGTCAG | + |
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Preference number: 3 (lower is better) Translates to: EAGKRLEKRKHDFLAAWQQKADS*GTIISQ Trigger: CTGACTGATTATTGTCCCCAAAGAATCTGCTTTCTG...TTGCCATGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR TCA 72 bp | GTAGCTGAGTCTAAGCTACAATGTTCTCACTCAGAGTaGTTATCCTCCCCTCAATGCCCTTTACGATGCAGG | + |
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Preference number: 3 (lower is better) Translates to: VAESKLQCSHSE*LSSPQCPLRCR Trigger: CCTGCATCGTAAAGGGCATTGAGGGGAGGATAATCACTCTGAGTGAGAACATTGTAGCTTAGACTCAGCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR TCA 72 bp | GATGGCAATAAATCTTGCAGTAGCCATCAGTACTTTTaGATGGGATGTAACATGTACAGCCACAACTTAGAA | + |
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Preference number: 3 (lower is better) Translates to: DGNKSCSSHQYF*MGCNMYSHNLE Trigger: TTCTAAGTTGTGGCTGTACATGTTACATCCCATTCAAAAGTACTGATGGCTACTGCAAGATTTATTGCCATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR CCA 72 bp | CTTCACTTCCTTATGTTAATAAGACACCTACTCCAATaGATGGCAATAAATCTTGCAGTAGCCATCAGTACT | + |
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Preference number: 3 (lower is better) Translates to: LHFLMLIRHLLQ*MAINLAVAIST Trigger: AGTACTGATGGCTACTGCAAGATTTATTGCCATCCATTGGAGTAGGTGTCTTATTAACATAAGGAAGTGAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| 3UTR GCA 72 bp | AAAAGGGCTTGCAGGTTAAATAGAATCTCATTAAGATaGTATGCATATCAAACTTACAACAAGCCCATTAAG | + |
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Preference number: 3 (lower is better) Translates to: KRACRLNRISLR*YAYQTYNKPIK Trigger: CTTAATGGGCTTGTTGTAAGTTTGATATGCATAGCATCTTAATGAGATTCTATTTAACCTGCAAGCCCTTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CCA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAAGTTCAGGGAATGCATaGAGCCAGTACGCCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: CSRERLLSQEAGKRLEKRSSGNA*SQYASW Trigger: CCAGCTGGCGTACTGGCTCCATGCATTCCCTGAACT...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR GCA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAGTAGAGTTCAGGGAATaGATGGAGCCAGTACGCCAG | + |
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Preference number: 4 (lower is better) Translates to: CSRERLLSQEAGKRLEKRVEFRE*MEPVRQ Trigger: CTGGCGTACTGGCTCCATGCATTCCCTGAACTCTAC...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR GCA 90 bp | TCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCAGCGGCGGGTTCTTGTTaGTCTTCTTGCGAATCGCCA | + |
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Preference number: 4 (lower is better) Translates to: SQEAGKRLEKRKHDFLAAAAGSC*SSCESP Trigger: TGGCGATTCGCAAGAAGAGCAACAAGAACCCGCCGC...TGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR GCA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGACTGATTCTCCGCTCTTaGGAGACCAAAACCAACAGT | + |
|
Preference number: 4 (lower is better) Translates to: CSRERLLSQEAGKRLEKRLILRS*ETKTNS Trigger: ACTGTTGGTTTTGGTCTCGCAAGAGCGGAGAATCAG...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CCA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGACTCCACCTCCGAAGCTaGAAGTTAATGAACTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: CSRERLLSQEAGKRLEKRLHLRS*KLMNFH Trigger: GTGGAAGTTCATTAACTTCCAGCTTCGGAGGTGGAG...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CCA 90 bp | GAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATGGCAATTCACAGGTGGGGCCTaGAAGGCAGAATGTTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: EAGKRLEKRKHDFLAAWQFTGGA*KAECSL Trigger: GAGGGAACATTCTGCCTTCCAGGCCCCACCTGTGAA...TTGCCATGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR GCA 90 bp | TTCGGAGATGAGAATGAACGTGCCCCACACACAGGCAAAAAGGTAGAATGCACTGCGGCGGGTTCTTGTTaGTCTTCTTGCGAATCGCCA | + |
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Preference number: 4 (lower is better) Translates to: FGDENERAPHTGKKVECTAAGSC*SSCESP Trigger: TGGCGATTCGCAAGAAGAGCAACAAGAACCCGCCGC...AGTGCATTCTACCTTTTTGCCTGTGTGTGGGGCACGTTCATTCTCATCTCCGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188377.2 |
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| CDS-3UTR TCA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGACGGGTAACATTATACTaGAGAGCAACAAAGATGATG | + |
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Preference number: 4 (lower is better) Translates to: CSRERLLSQEAGKRLEKRRVTLY*RATKMM Trigger: CATCATCTTTGTTGCTCTTCAGTATAATGTTACCCG...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR TCA 90 bp | GAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATGGCAACTAAAGTCCAGCTTCTaGTTCTCCGCTCTTGCGAGA | + |
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Preference number: 4 (lower is better) Translates to: EAGKRLEKRKHDFLAAWQLKSSF*FSALAR Trigger: TCTCGCAAGAGCGGAGAATCAGAAGCTGGACTTTAG...TTGCCATGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CCA 90 bp | TCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATCTCTGTTCCTTTTCTaGAAGACCTGCCTTTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: SQEAGKRLEKRKHDFLAASLFLF*KTCLWS Trigger: TGACCAAAGGCAGGTCTTCCAGAAAAGGAACAGAGA...TGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR TCA 90 bp | TCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCACAGGATAGTTGGGTCTaGGATATAGTTTTCGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: SQEAGKRLEKRKHDFLAAQDSWV*DIVFGD Trigger: ATCTCCGAAAACTATATCTCAGACCCAACTATCCTG...TGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR GCA 90 bp | TCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATCGTTAAACTTGCTGTaGTTCGTTTTGGAGAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: SQEAGKRLEKRKHDFLAASLNLL*FVLEKC Trigger: GCACTTCTCCAAAACGAAGCACAGCAAGTTTAACGA...TGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR TCA 90 bp | TCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCAAGAGAAAACCCTTTCTaGTACTTCTCGTCACTAAAA | + |
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Preference number: 4 (lower is better) Translates to: SQEAGKRLEKRKHDFLAARENPF*YFSSLK Trigger: TTTTAGTGACGAGAAGTATCAGAAAGGGTTTTCTCT...TGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR TCA 90 bp | TTCGGAGATGAGAATGAACGTGCCCCACACACAGGCAAAAAGGTAGAATGCACTCGGGTAACATTATACTaGAGAGCAACAAAGATGATG | + |
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Preference number: 4 (lower is better) Translates to: FGDENERAPHTGKKVECTRVTLY*RATKMM Trigger: CATCATCTTTGTTGCTCTTCAGTATAATGTTACCCG...AGTGCATTCTACCTTTTTGCCTGTGTGTGGGGCACGTTCATTCTCATCTCCGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188377.2 |
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| CDS-3UTR CCA 90 bp | AAATTGGTGAGAGCAAGAAAAATGTTCACTGGTTATGCAGGGGTTTGTAAATGGTGCTGTGCTTCGTTTTaGAGAAGTGCATCCGTCGGT | + |
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Preference number: 4 (lower is better) Translates to: KLVRARKMFTGYAGVCKWCCASF*RSASVG Trigger: ACCGACGGATGCACTTCTCCAAAACGAAGCACAGCA...CCATTTACAAACCCCTGCATAACCAGTGAACATTTTTCTTGCTCTCACCAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CCA 90 bp | AAATTGGTGAGAGCAAGAAAAATGTTCACTGGTTATGCAGGGGTTTGTAAATGGTTTCCTTTTCACAGGTaGGGCCTGGAAGGCAGAATG | + |
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Preference number: 4 (lower is better) Translates to: KLVRARKMFTGYAGVCKWFPFHR*GLEGRM Trigger: CATTCTGCCTTCCAGGCCCCACCTGTGAAAAGGAAA...CCATTTACAAACCCCTGCATAACCAGTGAACATTTTTCTTGCTCTCACCAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR GCA 90 bp | AAATTGGTGAGAGCAAGAAAAATGTTCACTGGTTATGCAGGGGTTTGTAAATGGTTCGTTTTGGAGAAGTaGATCCGTCGGTTAATTTTA | + |
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Preference number: 4 (lower is better) Translates to: KLVRARKMFTGYAGVCKWFVLEK*IRRLIL Trigger: TAAAATTAACCGACGGATGCACTTCTCCAAAACGAA...CCATTTACAAACCCCTGCATAACCAGTGAACATTTTTCTTGCTCTCACCAATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS CCA 90 bp | TCTGGAAGACCTGCCTTTGGTCACGGCCGGTTTCCTTTTCACAGGTaGGGCCTGGAAGGCAGAATGTTCCCTCCACCTCCGAAGCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: SGRPAFGHGRFPFHR*GLEGRMFPPPPKLE Trigger: TTCCAGCTTCGGAGGTGGAGGGAACATTCTGCCTTCCAGGCCCCACCTGTGAAAAGGAAACCGGCCGTGACCAAAGGCAGGTCTTCCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS CCA 90 bp | GACCTGCCTTTGGTCACGGCCGGTTTCCTTTTCACAGGTGGGGCCTaGAAGGCAGAATGTTCCCTCCACCTCCGAAGCTGGAAGTTAATG | + |
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Preference number: 5 (lower is better) Translates to: DLPLVTAGFLFTGGA*KAECSLHLRSWKLM Trigger: CATTAACTTCCAGCTTCGGAGGTGGAGGGAACATTCTGCCTTCCAGGCCCCACCTGTGAAAAGGAAACCGGCCGTGACCAAAGGCAGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CAA 90 bp | GAGAATGAACGTGCCCCACACACAGGCAAAAAGGTAGAATGCACTGAGCTGACCAGCGGCGGGTTCTTGTaGCTCTTCTTGCGAATCGCC | + |
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Preference number: 5 (lower is better) Translates to: ENERAPHTGKKVECTELTSGGFL*LFLRIA Trigger: GGCGATTCGCAAGAAGAGCAACAAGAACCCGCCGCT...GGTCAGCTCAGTGCATTCTACCTTTTTGCCTGTGTGTGGGGCACGTTCATTCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188377.2 |
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| CDS-3UTR CAA 90 bp | TGCTCCAGGGAGCGACTACTTTCCCAGGAAGCAGGTAAGCGGCTGGAGAAGAGACCACATCATGAAGGCTaGTGTGATGCAAATGGACGC | + |
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Preference number: 5 (lower is better) Translates to: CSRERLLSQEAGKRLEKRPHHEG*CDANGR Trigger: GCGTCCATTTGCATCACACAAGCCTTCATGATGTGG...TCTCTTCTCCAGCCGCTTACCTGCTTCCTGGGAAAGTAGTCGCTCCCTGGAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CAA 90 bp | GAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATGGCAAAGCGGCGGGTTCTTGTaGCTCTTCTTGCGAATCGCC | + |
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Preference number: 5 (lower is better) Translates to: EAGKRLEKRKHDFLAAWQSGGFL*LFLRIA Trigger: GGCGATTCGCAAGAAGAGCAACAAGAACCCGCCGCT...TTGCCATGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS CCA 90 bp | ACAGGTGGGGCCTGGAAGGCAGAATGTTCCCTCCACCTCCGAAGCTaGAAGTTAATGAACTTCCACATCATGAAGGCTTGTGTGATGCAA | + |
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Preference number: 5 (lower is better) Translates to: TGGAWKAECSLHLRS*KLMNFHIMKACVMQ Trigger: TTGCATCACACAAGCCTTCATGATGTGGAAGTTCATTAACTTCCAGCTTCGGAGGTGGAGGGAACATTCTGCCTTCCAGGCCCCACCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS TCA 90 bp | TTACGAAGACTTCTCTTTCCTGTTCCGAGGGGAGTCTGCTCCGTTTaGTGTGACTGTGCCGTTCACACCGTTCTCTGTTCCTTTTCTGGA | + |
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Preference number: 5 (lower is better) Translates to: LRRLLFPVPRGVCSV*CDCAVHTVLCSFSG Trigger: TCCAGAAAAGGAACAGAGAACGGTGTGAACGGCACAGTCACATCAAACGGAGCAGACTCCCCTCGGAACAGGAAAGAGAAGTCTTCGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CAA 90 bp | GAAGCAGGTAAGCGGCTGGAGAAGAGAAAGCATGACTTTCTAGCAGCATGGCAACCAGACTCGTTAAACTaGCTGTGCTTCGTTTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: EAGKRLEKRKHDFLAAWQPDSLN*LCFVLE Trigger: CTCCAAAACGAAGCACAGCAAGTTTAACGAGTCTGG...TTGCCATGCTGCTAGAAAGTCATGCTTTCTCTTCTCCAGCCGCTTACCTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS TCA 90 bp | CTAACGGCCAACACGTTGAAGTTTCCAGTACTAAAGTCCAGCTTCTaGTTCTCCGCTCTTGCGAGACCAAAACCAACAGTAAGAACTGAA | + |
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Preference number: 5 (lower is better) Translates to: LTANTLKFPVLKSSF*FSALARPKPTVRTE Trigger: TTCAGTTCTTACTGTTGGTTTTGGTCTCGCAAGAGCGGAGAATCAGAAGCTGGACTTTAGTACTGGAAACTTCAACGTGTTGGCCGTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS TCA 90 bp | GATTCAGTAGCTTGTTCTTCTGTTGCAGGGCGGGTAACATTATACTaGAGAGCAACAAAGATGATGGCTCCTTTTGCTGTTACCTCGAAC | + |
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Preference number: 5 (lower is better) Translates to: DSVACSSVAGRVTLY*RATKMMAPFAVTSN Trigger: GTTCGAGGTAACAGCAAAAGGAGCCATCATCTTTGTTGCTCTTCAGTATAATGTTACCCGCCCTGCAACAGAAGAACAAGCTACTGAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CAA 90 bp | AAATTGGTGAGAGCAAGAAAAATGTTCACTGGTTATGCAGGGGTTTGTAAATGGTTGCTGTGCTTCGTTTaGGAGAAGTGCATCCGTCGG | + |
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Preference number: 5 (lower is better) Translates to: KLVRARKMFTGYAGVCKWLLCFV*EKCIRR Trigger: CCGACGGATGCACTTCTCCAAAACGAAGCACAGCAA...CCATTTACAAACCCCTGCATAACCAGTGAACATTTTTCTTGCTCTCACCAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CAA 90 bp | AAATTGGTGAGAGCAAGAAAAATGTTCACTGGTTATGCAGGGGTTTGTAAATGGTCTGATTCTCCGCTCTaGCGAGACCAAAACCAACAG | + |
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Preference number: 5 (lower is better) Translates to: KLVRARKMFTGYAGVCKWSDSPL*RDQNQQ Trigger: CTGTTGGTTTTGGTCTCGCAAGAGCGGAGAATCAGA...CCATTTACAAACCCCTGCATAACCAGTGAACATTTTTCTTGCTCTCACCAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS-3UTR CAA 90 bp | AAATTGGTGAGAGCAAGAAAAATGTTCACTGGTTATGCAGGGGTTTGTAAATGGCTAACGGCCAACACGTaGAAGTTTCCAGTACTAAAG | + |
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Preference number: 5 (lower is better) Translates to: KLVRARKMFTGYAGVCKWLTANT*KFPVLK Trigger: CTTTAGTACTGGAAACTTCAACGTGTTGGCCGTTAG...CCATTTACAAACCCCTGCATAACCAGTGAACATTTTTCTTGCTCTCACCAATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS CCA 72 bp | TTGGTCACGGCCGGTTTCCTTTTCACAGGTGGGGCCTaGAAGGCAGAATGTTCCCTCCACCTCCGAAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LVTAGFLFTGGA*KAECSLHLRSW Trigger: CCAGCTTCGGAGGTGGAGGGAACATTCTGCCTTCCAGGCCCCACCTGTGAAAAGGAAACCGGCCGTGACCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS TCA 72 bp | CTTCTCTTTCCTGTTCCGAGGGGAGTCTGCTCCGTTTaGTGTGACTGTGCCGTTCACACCGTTCTCTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LLFPVPRGVCSV*CDCAVHTVLCS Trigger: GGAACAGAGAACGGTGTGAACGGCACAGTCACATCAAACGGAGCAGACTCCCCTCGGAACAGGAAAGAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS CCA 72 bp | GCCTGGAAGGCAGAATGTTCCCTCCACCTCCGAAGCTaGAAGTTAATGAACTTCCACATCATGAAGGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: AWKAECSLHLRS*KLMNFHIMKAC Trigger: ACAAGCCTTCATGATGTGGAAGTTCATTAACTTCCAGCTTCGGAGGTGGAGGGAACATTCTGCCTTCCAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS TCA 72 bp | GTTATGGGGATAGGCTCTCCACAGGATAGTTGGGTCTaGGATATAGTTTTCGGAGATGAGAATGAACGTGCC | + |
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Preference number: 6 (lower is better) Translates to: VMGIGSPQDSWV*DIVFGDENERA Trigger: GGCACGTTCATTCTCATCTCCGAAAACTATATCTCAGACCCAACTATCCTGTGGAGAGCCTATCCCCATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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| CDS TCA 72 bp | AACACGTTGAAGTTTCCAGTACTAAAGTCCAGCTTCTaGTTCTCCGCTCTTGCGAGACCAAAACCAACAGTA | + |
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Preference number: 6 (lower is better) Translates to: NTLKFPVLKSSF*FSALARPKPTV Trigger: TACTGTTGGTTTTGGTCTCGCAAGAGCGGAGAATCAGAAGCTGGACTTTAGTACTGGAAACTTCAACGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027068.11 |
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