RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRAF3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021277

Ensembl transcript IDs: ENSMUST00000021706.11, ENSMUST00000060274.7, ENSMUST00000117269.8, ENSMUST00000139162.8

Found 467 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGAGAGGGCGGGCCTCTGCACTCACAGGCTGGGCATCAGCTGGCTaGCCTCCTCACAGGGAGGCCAGGGTTGCTGCTGCCAGCCCGGGC +
Preference number: 1 (lower is better)
Translates to: LRGRASALTGWASAG*PPHREARVAAASPG
Trigger: GCCCGGGCTGGCAGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGTGAGTGCAGAGGCCCGCCCTCTCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GGATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTaGCTATCCCCGGACACCGACACTGGAGACCAAGGCTGGTGCTGT +
Preference number: 1 (lower is better)
Translates to: GWDARWGLLPAARVT*LSPDTDTGDQGWCC
Trigger: ACAGCACCAGCCTTGGTCTCCAGTGTCGGTGTCCGGGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp GGGGCGAAGGCACACCCAGGACAGATGGCAGCACCAGAGACAAGGTaGGCTACCGGGCACCAACCCAGCTGTCCCCGTGCGACCATGGGG +
Preference number: 1 (lower is better)
Translates to: GAKAHPGQMAAPETR*ATGHQPSCPRATMG
Trigger: CCCCATGGTCGCACGGGGACAGCTGGGTTGGTGCCCGGTAGCCCACCTTGTCTCTGGTGCTGCCATCTGTCCTGGGTGTGCCTTCGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp ATAGGTCCAGGTTGGGGGATGGGCTCCTGGACGCCACAGTCCTCGTaGCTAGCAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGG +
Preference number: 1 (lower is better)
Translates to: IGPGWGMGSWTPQSS*LAAAAGVGELATAG
Trigger: CCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTGCTAGCCACGAGGACTGTGGCGTCCAGGAGCCCATCCCCCAACCTGGACCTAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp ACCAGAGACAAGGTGGGCTACCGGGCACCAACCCAGCTGTCCCCGTaGGACCATGGGGAGAGCCCAGAGGCAGGCAGTCTGAAGCGCAGG +
Preference number: 1 (lower is better)
Translates to: TRDKVGYRAPTQLSP*DHGESPEAGSLKRR
Trigger: CCTGCGCTTCAGACTGCCTGCCTCTGGGCTCTCCCCATGGTCGCACGGGGACAGCTGGGTTGGTGCCCGGTAGCCCACCTTGTCTCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp GGAGGCCAGGGTTGCTGCTGCCAGCCCGGGCAGGCCCCAGACCAGTaGTCTCGGGAACGCTTGGGACTAGGGCACTTCTCCTTCATGCTG +
Preference number: 1 (lower is better)
Translates to: GGQGCCCQPGQAPDQ*SRERLGLGHFSFML
Trigger: CAGCATGAAGGAGAAGTGCCCTAGTCCCAAGCGTTCCCGAGACCACTGGTCTGGGGCCTGCCCGGGCTGGCAGCAGCAACCCTGGCCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp GCAAGGGCCATGCTGCTGACCCTGGCACTCCCCCTGGTCTCCTCTTaGGCCGGCAGGAGTGGTCCACCTAGGACCCCGTTACTTGGCGTG +
Preference number: 1 (lower is better)
Translates to: ARAMLLTLALPLVSS*AGRSGPPRTPLLGV
Trigger: CACGCCAAGTAACGGGGTCCTAGGTGGACCACTCCTGCCGGCCCAAGAGGAGACCAGGGGGAGTGCCAGGGTCAGCAGCATGGCCCTTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp CCGGGGCAGGGCTCCAGGCTTCTCATCACAGTGGGAACAGTGAGCTaGGAGGGCGGGCCTCTGCACTCACAGGCTGGGCATCAGCTGGCT +
Preference number: 1 (lower is better)
Translates to: PGQGSRLLITVGTVS*EGGPLHSQAGHQLA
Trigger: AGCCAGCTGATGCCCAGCCTGTGAGTGCAGAGGCCCGCCCTCTCAGCTCACTGTTCCCACTGTGATGAGAAGCCTGGAGCCCTGCCCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GGCACACCCAGGCAGGACGCAGCCTGCTCCACACCTCCCAGGAGATaGCCTTCACACACTGAGACAGGGCACAGAGGGGCAAGCTTGCCC +
Preference number: 1 (lower is better)
Translates to: GTPRQDAACSTPPRR*PSHTETGHRGASLP
Trigger: GGGCAAGCTTGCCCCTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGGCTGCGTCCTGCCTGGGTGTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp ATGCAGCAGTATGACAGGATGGGATGCTCGCTGGGGCCTCCTGCCTaGGGCACGGGTCACCTGCCTATCCCCGGACACCGACACTGGAGA +
Preference number: 1 (lower is better)
Translates to: MQQYDRMGCSLGPPA*GTGHLPIPGHRHWR
Trigger: TCTCCAGTGTCGGTGTCCGGGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATACTGCTGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp CATGGGGAGAGCCCAGAGGCAGGCAGTCTGAAGCGCAGGCCCAGCTaGCCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGG +
Preference number: 1 (lower is better)
Translates to: HGESPEAGSLKRRPS*PIVGAPFGQVAQMW
Trigger: CCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGGCCAGCTGGGCCTGCGCTTCAGACTGCCTGCCTCTGGGCTCTCCCCATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp CAATGCCCCACACCCCCGGGTGGTGAGCACCAAGGAATGCTGAGATaGAGCAGAGCAAGGCACACCCAGGCAGGACGCAGCCTGCTCCAC +
Preference number: 1 (lower is better)
Translates to: QCPTPPGGEHQGMLR*SRARHTQAGRSLLH
Trigger: GTGGAGCAGGCTGCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTCACCACCCGGGGGTGTGGGGCATTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp GGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTaGAGGAGGCTCGGCCAGGGCACCCCAGGCTACCTTCTTCTCCCT +
Preference number: 1 (lower is better)
Translates to: GLHVWPPLALSIPKR*RRLGQGTPGYLLLP
Trigger: AGGGAGAAGAAGGTAGCCTGGGGTGCCCTGGCCGAGCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp GGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGAAGGAGCCTTaGCCAAGTCTCACTAAAAGGGAGGACGGGCCCGAGGACATGTCA +
Preference number: 1 (lower is better)
Translates to: GTGEARRATSHRKEP*PSLTKREDGPEDMS
Trigger: TGACATGTCCTCGGGCCCGTCCTCCCTTTTAGTGAGACTTGGTCAAGGCTCCTTCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp GCCATGGAAGGGCAGGGTGAGTGCTCGAAACCAAGAGGTCGCTCATaGAAGCACGGGGACAGGTGTGCGAGAGGAGGGCACTTCCAGCAG +
Preference number: 1 (lower is better)
Translates to: AMEGQGECSKPRGRS*KHGDRCARGGHFQQ
Trigger: CTGCTGGAAGTGCCCTCCTCTCGCACACCTGTCCCCGTGCTTCCATGAGCGACCTCTTGGTTTCGAGCACTCACCCTGCCCTTCCATGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp GCTGCCAATGGAGGCCTGGCATCCCCAGGCAGGTTCAGAGTTGCCTaGGGGCCCTGGCAGAGACAAAGTTCTGGTGGTGGAGAGAGATCT +
Preference number: 1 (lower is better)
Translates to: AANGGLASPGRFRVA*GPWQRQSSGGGERS
Trigger: AGATCTCTCTCCACCACCAGAACTTTGTCTCTGCCAGGGCCCTCAGGCAACTCTGAACCTGCCTGGGGATGCCAGGCCTCCATTGGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp GTGAAGGAGGCTCGGCCAGGGCACCCCAGGCTACCTTCTTCTCCCTaGCCAACGAAGGTGGAAGGCCCTGGGTTGTTACTGACACAAGCT +
Preference number: 1 (lower is better)
Translates to: VKEARPGHPRLPSSP*PTKVEGPGLLLTQA
Trigger: AGCTTGTGTCAGTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGGGGTGCCCTGGCCGAGCCTCCTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp AAGAGCTGCCAATGGAGGCCTGGCATCCCCAGGCAGGTTCAGAGTTaGCTGAGGGCCCTGGCAGAGACAAAGTTCTGGTGGTGGAGAGAG +
Preference number: 1 (lower is better)
Translates to: KSCQWRPGIPRQVQS*LRALAETKFWWWRE
Trigger: CTCTCTCCACCACCAGAACTTTGTCTCTGCCAGGGCCCTCAGGCAACTCTGAACCTGCCTGGGGATGCCAGGCCTCCATTGGCAGCTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GGACTAGGGCACTTCTCCTTCATGCTGTGGGGATTTCAGGGCCCTTaGAGAGACCTGGAAGGGTGTGGCTTCTGCTCACACCTCCCTCCC +
Preference number: 1 (lower is better)
Translates to: GLGHFSFMLWGFQGP*RDLEGCGFCSHLPP
Trigger: GGGAGGGAGGTGTGAGCAGAAGCCACACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCCCCACAGCATGAAGGAGAAGTGCCCTAGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GCTAGGACTGGTAGCCACAGCTATGCTGAGACCACAGCCCAACAATaGCCCACACCCCCGGGTGGTGAGCACCAAGGAATGCTGAGATGG +
Preference number: 1 (lower is better)
Translates to: ARTGSHSYAETTAQQ*PTPPGGEHQGMLRW
Trigger: CCATCTCAGCATTCCTTGGTGCTCACCACCCGGGGGTGTGGGGCATTGTTGGGCTGTGGTCTCAGCATAGCTGTGGCTACCAGTCCTAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp GAAGAGGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTaGGCATGGGCTCTGCTCTCCTGTGTGAGCCCAGCTCACACTCAG +
Preference number: 1 (lower is better)
Translates to: EEDADPLTALCFLEC*AWALLSCVSPAHTQ
Trigger: CTGAGTGTGAGCTGGGCTCACACAGGAGAGCAGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCCTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp GGACGCAGCCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTaGGACAGGGCACAGAGGGGCAAGCTTGCCCACTATTCTACAGTT +
Preference number: 1 (lower is better)
Translates to: GRSLLHTSQEMPFTH*DRAQRGKLAHYSTV
Trigger: AACTGTAGAATAGTGGGCAAGCTTGCCCCTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGGCTGCGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp TGGTCTCGGGAACGCTTGGGACTAGGGCACTTCTCCTTCATGCTGTaGGGATTTCAGGGCCCTTGCAGAGACCTGGAAGGGTGTGGCTTC +
Preference number: 1 (lower is better)
Translates to: WSRERLGLGHFSFML*GFQGPCRDLEGCGF
Trigger: GAAGCCACACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCCCCACAGCATGAAGGAGAAGTGCCCTAGTCCCAAGCGTTCCCGAGACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp GGTGGCTGTAAGCAGACACCTCCCTCAGCTCATGGCTGTGCTGTCTaGCTGTTGTGCTGTCTTAGGGACATGGCGCCATCTGTGCACAGG +
Preference number: 1 (lower is better)
Translates to: GGCKQTPPSAHGCAV*LLCCLRDMAPSVHR
Trigger: CCTGTGCACAGATGGCGCCATGTCCCTAAGACAGCACAACAGTCAGACAGCACAGCCATGAGCTGAGGGAGGTGTCTGCTTACAGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp CGGGTCACCTGCCTATCCCCGGACACCGACACTGGAGACCAAGGCTaGTGCTGTCAGCAACAGAGCTTGTCTAAACATGGGGCAGAATTG +
Preference number: 1 (lower is better)
Translates to: RVTCLSPDTDTGDQG*CCQQQSLSKHGAEL
Trigger: CAATTCTGCCCCATGTTTAGACAAGCTCTGTTGCTGACAGCACCAGCCTTGGTCTCCAGTGTCGGTGTCCGGGGATAGGCAGGTGACCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GGCTACTTTAGAAAGGAAGAGGATGCGGACCCTCTCACAGCCCTTTaGTTCCTGGAATGCTGGGCATGGGCTCTGCTCTCCTGTGTGAGC +
Preference number: 1 (lower is better)
Translates to: GYFRKEEDADPLTAL*FLECWAWALLSCVS
Trigger: GCTCACACAGGAGAGCAGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCCTCTTCCTTTCTAAAGTAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp ATGGAGAGAAGCGGGGAGCAGAGGACAAACCAAACGCTTCAGCCATaGAAGGGCAGGGTGAGTGCTCGAAACCAAGAGGTCGCTCATGGA +
Preference number: 1 (lower is better)
Translates to: MERSGEQRTNQTLQP*KGRVSARNQEVAHG
Trigger: TCCATGAGCGACCTCTTGGTTTCGAGCACTCACCCTGCCCTTCCATGGCTGAAGCGTTTGGTTTGTCCTCTGCTCCCCGCTTCTCTCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp ATGAGGCTGACCACATATTTCAAAGGGATCTGGTGGGGGTGGGTCTaGAGGCCCTGCTGGAGGCTGCCCAGTCCTTGGAATAAACGGGAA +
Preference number: 1 (lower is better)
Translates to: MRLTTYFKGIWWGWV*RPCWRLPSPWNKRE
Trigger: TTCCCGTTTATTCCAAGGACTGGGCAGCCTCCAGCAGGGCCTTCAGACCCACCCCCACCAGATCCCTTTGAAATATGTGGTCAGCCTCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp TCTAAGGCACAAGTACCGTATGCCACCATCTCTGAGCACGGATGTTaGTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGG +
Preference number: 1 (lower is better)
Translates to: SKAQVPYATISEHGC*FRSALAGCSSMTGW
Trigger: CCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCCGTGCTCAGAGATGGTGGCATACGGTACTTGTGCCTTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp CTGGTGACAGGCCTAGAGGAAGAGGAGGGCACCTTTGAAAGAACTTaGGCTCTGCGGTCTTTCCTTGTGGGCAGAACCAAGGTTGCTGAC +
Preference number: 1 (lower is better)
Translates to: LVTGLEEEEGTFERT*ALRSFLVGRTKVAD
Trigger: GTCAGCAACCTTGGTTCTGCCCACAAGGAAAGACCGCAGAGCTCAAGTTCTTTCAAAGGTGCCCTCCTCTTCCTCTAGGCCTGTCACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GTGCTGTCTGACTGTTGTGCTGTCTTAGGGACATGGCGCCATCTGTaGACAGGCTACTTTAGAAAGGAAGAGGATGCGGACCCTCTCACA +
Preference number: 1 (lower is better)
Translates to: VLSDCCAVLGTWRHL*TGYFRKEEDADPLT
Trigger: TGTGAGAGGGTCCGCATCCTCTTCCTTTCTAAAGTAGCCTGTGCACAGATGGCGCCATGTCCCTAAGACAGCACAACAGTCAGACAGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp CAGCTCATGGCTGTGCTGTCTGACTGTTGTGCTGTCTTAGGGACATaGCGCCATCTGTGCACAGGCTACTTTAGAAAGGAAGAGGATGCG +
Preference number: 1 (lower is better)
Translates to: QLMAVLSDCCAVLGT*RHLCTGYFRKEEDA
Trigger: CGCATCCTCTTCCTTTCTAAAGTAGCCTGTGCACAGATGGCGCCATGTCCCTAAGACAGCACAACAGTCAGACAGCACAGCCATGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp ACACGGGACGCTAATCACTGGTCACGATCACTTGGACTGTCAAGATaGGGCCTCACAGCGAGCGGTTACTACAGACGGCATGTGTCAAAA +
Preference number: 1 (lower is better)
Translates to: TRDANHWSRSLGLSR*GLTASGYYRRHVSK
Trigger: TTTTGACACATGCCGTCTGTAGTAACCGCTCGCTGTGAGGCCCCATCTTGACAGTCCAAGTGATCGTGACCAGTGATTAGCGTCCCGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp TTTGCTGGATGCTGTCCACTGGTTGCCAGGTCTGCCGTGGGTGACTaGTATGTATACTGTTCAGTTAATGTCAGGCCCAAGATAGCAGGC +
Preference number: 1 (lower is better)
Translates to: FAGCCPLVARSAVGD*YVYCSVNVRPKIAG
Trigger: GCCTGCTATCTTGGGCCTGACATTAACTGAACAGTATACATAGCAGTCACCCACGGCAGACCTGGCAACCAGTGGACAGCATCCAGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp TCCTCATCTTTGCTGGATGCTGTCCACTGGTTGCCAGGTCTGCCGTaGGTGACTGCTATGTATACTGTTCAGTTAATGTCAGGCCCAAGA +
Preference number: 1 (lower is better)
Translates to: SSSLLDAVHWLPGLP*VTAMYTVQLMSGPR
Trigger: TCTTGGGCCTGACATTAACTGAACAGTATACATAGCAGTCACCCACGGCAGACCTGGCAACCAGTGGACAGCATCCAGCAAAGATGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GCCATCAGAGATAAGAACGGAACTTTAGAACAGTCTGCAGCTGTCTaGACTGACCCCAACCTACTCAGTCAGAGCGCCCACAGATTCTTA +
Preference number: 1 (lower is better)
Translates to: AIRDKNGTLEQSAAV*TDPNLLSQSAHRFL
Trigger: TAAGAATCTGTGGGCGCTCTGACTGAGTAGGTTGGGGTCAGTGCAGACAGCTGCAGACTGTTCTAAAGTTCCGTTCTTATCTCTGATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATGCTaGTGGCCTACACCTGTTGATACTGCACTGATTTCTCTGAAGGGG +
Preference number: 1 (lower is better)
Translates to: GSETKDRHAFCQTRC*WPTPVDTALISLKG
Trigger: CCCCTTCAGAGAAATCAGTGCAGTATCAACAGGTGTAGGCCAGCAGCATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp GCACAGAGGGGCAAGCTTGCCCACTATTCTACAGTTACCGAGAAATaGAATAGACACAACACACTACAGGAAGCTGTGACATTGTTCAGG +
Preference number: 1 (lower is better)
Translates to: AQRGKLAHYSTVTEK*NRHNTLQEAVTLFR
Trigger: CCTGAACAATGTCACAGCTTCCTGTAGTGTGTTGTGTCTATTGCATTTCTCGGTAACTGTAGAATAGTGGGCAAGCTTGCCCCTCTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 90 bp CCCAACCTACTCAGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTaGGAGGAAGGCCGGCTTTTGTGTTTTCCAATTAGGTCATTTATT +
Preference number: 1 (lower is better)
Translates to: PNLLSQSAHRFLGNP*EEGRLLCFPIRSFI
Trigger: AATAAATGACCTAATTGGAAAACACAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACTGAGTAGGTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 90 bp CAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATaGTGCTGGCCTACACCTGTTGATACTGCACTGATTTCTCTGAAG +
Preference number: 1 (lower is better)
Translates to: QGSETKDRHAFCQTR*CWPTPVDTALISLK
Trigger: CTTCAGAGAAATCAGTGCAGTATCAACAGGTGTAGGCCAGCAGCATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 90 bp ACACACGGTAAACAAAACACGAAACATCATAATGCTATCAGGAGATaGGGCGTGCTGCTAACTCCTGGTGACATGATTATTGCTGAGCAA +
Preference number: 1 (lower is better)
Translates to: THGKQNTKHHNAIRR*GVLLTPGDMIIAEQ
Trigger: TTGCTCAGCAATAATCATGTCACCAGGAGTTAGCAGCACGCCTCATCTCCTGATAGCATTATGATGTTTCGTGTTTTGTTTACCGTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTGGCCAGGGTTGCTGCTaGCAGCCCGGGCAGGCCCCA +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSGQGCC*QPGQAP
Trigger: TGGGGCCTGCCCGGGCTGGCAGCAGCAACCCTGGCC...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTCAGAGGCAGGCAGTCTaGAGCGCAGGCCCAGCTGGC +
Preference number: 2 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSQRQAV*SAGPAG
Trigger: GCCAGCTGGGCCTGCGCTTCAGACTGCCTGCCTCTG...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGACTGGGGCCTCCTGCCTaGGGCACGGGTCACCTGCCT +
Preference number: 2 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGLGPPA*GTGHLP
Trigger: AGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAG...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCACCCAGCTGTCCCCGTaGGACCATGGGGAGAGCCCA +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMITQLSP*DHGESP
Trigger: TGGGCTCTCCCCATGGTCGCACGGGGACAGCTGGGT...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCGTCCCCGTGCGACCATaGGGAGAGCCCAGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIVPVRP*GEPRGR
Trigger: CCTGCCTCTGGGCTCTCCCCATGGTCGCACGGGGAC...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp TGCTGCCAGCCCGGGCAGGCCCCAGACCAGTGGTCTCGGGAACGCTaGGGACTAGGGCACTTCTCCTTCATGCTGTGGGGATTTCAGGGC +
Preference number: 2 (lower is better)
Translates to: CCQPGQAPDQWSRER*GLGHFSFMLWGFQG
Trigger: GCCCTGAAATCCCCACAGCATGAAGGAGAAGTGCCCTAGTCCCAAGCGTTCCCGAGACCACTGGTCTGGGGCCTGCCCGGGCTGGCAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGACAGAGGCAGGCAGTCTaGAGCGCAGGCCCAGCTGGC +
Preference number: 2 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGQRQAV*SAGPAG
Trigger: GCCAGCTGGGCCTGCGCTTCAGACTGCCTGCCTCTG...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCTCTATCCCCAAGAGGTaGAGGAGGCTCGGCCAGGGC +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMISIPKR*RRLGQG
Trigger: GCCCTGGCCGAGCCTCCTTCACCTCTTGGGGATAGA...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGAGAGGGCGGGCCTCTaGACTCACAGGCTGGGCATC +
Preference number: 2 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSERAGL*THRLGI
Trigger: GATGCCCAGCCTGTGAGTGCAGAGGCCCGCCCTCTC...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCATGCCCTTCACACACTaGGACAGGGCACAGAGGGGC +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIMPFTH*DRAQRG
Trigger: GCCCCTCTGTGCCCTGTCTCAGTGTGTGAAGGGCAT...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATCTGGGGCCTCCTGCCTaGGGCACGGGTCACCTGCCT +
Preference number: 2 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDLGPPA*GTGHLP
Trigger: AGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAG...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACCTGGGGCCTCCTGCCTaGGGCACGGGTCACCTGCCT +
Preference number: 2 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHLGPPA*GTGHLP
Trigger: AGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAG...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGGGCCAGGGTTGCTGCTaGCAGCCCGGGCAGGCCCCA +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLGQGCC*QPGQAP
Trigger: TGGGGCCTGCCCGGGCTGGCAGCAGCAACCCTGGCC...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCCTGCCAATGGAGGCCTaGCATCCCCAGGCAGGTTCA +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMILPMEA*HPQAGS
Trigger: TGAACCTGCCTGGGGATGCCAGGCCTCCATTGGCAG...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCGTCCCCGTGCGACCATaGGGAGAGCCCAGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: PTLSPVGGNALARYKSPCVPVRP*GEPRGR
Trigger: CCTGCCTCTGGGCTCTCCCCATGGTCGCACGGGGAC...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp ACCCGCTGCTTGGGTGCTGGGGCATGCTCAGCTGTAGGGCTGGCTTaGGTGTGGGTCACTGCCTTGCCTGCCTACCTAGTAATGGTGCCC +
Preference number: 2 (lower is better)
Translates to: TRCLGAGACSAVGLA*VWVTALPAYLVMVP
Trigger: GGGCACCATTACTAGGTAGGCAGGCAAGGCAGTGACCCACACCAAAGCCAGCCCTACAGCTGAGCATGCCCCAGCACCCAAGCAGCGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCAGGTTCAGAGTTGCCTaGGGGCCCTGGCAGAGACAA +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIRFRVA*GPWQRQ
Trigger: TTGTCTCTGCCAGGGCCCTCAGGCAACTCTGAACCT...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCCACACCCCCGGGTGGTaGGCACCAAGGAATGCTGAG +
Preference number: 2 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGHTPGW*APRNAE
Trigger: CTCAGCATTCCTTGGTGCTCACCACCCGGGGGTGTG...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTAGGCAGGTTCAGAGTTaGCTGAGGGCCCTGGCAGAG +
Preference number: 2 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSRQVQS*LRALAE
Trigger: CTCTGCCAGGGCCCTCAGGCAACTCTGAACCTGCCT...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCCCCGGACACCGACACTaGAGACCAAGGCTGGTGCTG +
Preference number: 2 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGPGHRH*RPRLVL
Trigger: CAGCACCAGCCTTGGTCTCCAGTGTCGGTGTCCGGG...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACGGATGGGATGCTCGCTaGGGCCTCCTGCCTGCGGCA +
Preference number: 2 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYGWDAR*GLLPAA
Trigger: TGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCC...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCAGGCTGGGCATCAGCTaGCTGCCCTCCTCACAGGGA +
Preference number: 2 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGRLGIS*LPSSQG
Trigger: TCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCT...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTAGGCTGGGCATCAGCTaGCTGCCCTCCTCACAGGGA +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSRLGIS*LPSSQG
Trigger: TCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCT...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCACTTCCAGCAGGCACTaGGGCGAAGGCACACCCAGG +
Preference number: 2 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGTSSRH*GEGTPR
Trigger: CCTGGGTGTGCCTTCGCCCCAGTGCCTGCTGGAAGT...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGTGGTGGGGGTGGGTCTaGAGGCCCTGCTGGAGGCTG +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLWWGWV*RPCWRL
Trigger: CAGCCTCCAGCAGGGCCTTCAGACCCACCCCCACCA...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCGGCACTTCTCCTTCATaGTGTGGGGATTTCAGGGCC +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIGTSPS*CGDFRA
Trigger: GGCCCTGAAATCCCCACAGCATGAAGGAGAAGTGCC...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCCCCGGACACCGACACTaGAGACCAAGGCTGGTGCTG +
Preference number: 2 (lower is better)
Translates to: PTLSPVGGNALARYKSPCPGHRH*RPRLVL
Trigger: CAGCACCAGCCTTGGTCTCCAGTGTCGGTGTCCGGG...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGCTGCCAATGGAGGCCTaGCATCCCCAGGCAGGTTCA +
Preference number: 2 (lower is better)
Translates to: PAPHLPGDALHTLRQGTELPMEA*HPQAGS
Trigger: TGAACCTGCCTGGGGATGCCAGGCCTCCATTGGCAG...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCCTGCCAATGGAGGCCTaGCATCCCCAGGCAGGTTCA +
Preference number: 2 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRLPMEA*HPQAGS
Trigger: TGAACCTGCCTGGGGATGCCAGGCCTCCATTGGCAG...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGCACACCTCCCTCCCTTaGAGTGGGACTGAGCTGCTC +
Preference number: 2 (lower is better)
Translates to: PAPHLPGDALHTLRQGTEHTSLP*SGTELL
Trigger: GAGCAGCTCAGTCCCACTCCAAGGGAGGGAGGTGTG...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCCACACCTCCCTCCCTTaGAGTGGGACTGAGCTGCTC +
Preference number: 2 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGHTSLP*SGTELL
Trigger: GAGCAGCTCAGTCCCACTCCAAGGGAGGGAGGTGTG...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCTGTGGGCGCGCCTTTTaGGCAAGTGGCACAGATGTG +
Preference number: 2 (lower is better)
Translates to: PIPLTRGLHVWPPLALSICGRAF*ASGTDV
Trigger: CACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACA...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTCCAGCTGGCCAATTGTaGGCGCGCCTTTTGGGCAAG +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSPAGQL*ARLLGK
Trigger: CTTGCCCAAAAGGCGCGCCCACAATTGGCCAGCTGG...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGGTCCCCGTGCGACCATaGGGAGAGCCCAGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLVPVRP*GEPRGR
Trigger: CCTGCCTCTGGGCTCTCCCCATGGTCGCACGGGGAC...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCCGCGGCCTACATGTGTaGCCTCCGCTGGCTCTGTCT +
Preference number: 2 (lower is better)
Translates to: PTLSPVGGNALARYKSPCRGLHV*PPLALS
Trigger: AGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCG...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp CAAGAGCTGCCAATGGAGGCCTGGCATCCCCAGGCAGGTTCAGAGTaGCCTGAGGGCCCTGGCAGAGACAAAGTTCTGGTGGTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: QELPMEAWHPQAGSE*PEGPGRDKVLVVER
Trigger: TCTCTCCACCACCAGAACTTTGTCTCTGCCAGGGCCCTCAGGCAACTCTGAACCTGCCTGGGGATGCCAGGCCTCCATTGGCAGCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp GGGACTAGGGCACTTCTCCTTCATGCTGTGGGGATTTCAGGGCCCTaGCAGAGACCTGGAAGGGTGTGGCTTCTGCTCACACCTCCCTCC +
Preference number: 2 (lower is better)
Translates to: GTRALLLHAVGISGP*QRPGRVWLLLTPPS
Trigger: GGAGGGAGGTGTGAGCAGAAGCCACACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCCCCACAGCATGAAGGAGAAGTGCCCTAGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCGTATGCCACCATCTCTaGGCACGGATGTTGCTTTCG +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIVCHHL*ARMLLS
Trigger: CGAAAGCAACATCCGTGCTCAGAGATGGTGGCATAC...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGAAGGTTCAGAGTTGCCTaGGGGCCCTGGCAGAGACAA +
Preference number: 2 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGRFRVA*GPWQRQ
Trigger: TTGTCTCTGCCAGGGCCCTCAGGCAACTCTGAACCT...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCTTCTCCTCCTCCGGCTaGTTCCTCTGTCCCACAAGG +
Preference number: 2 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRFSSSG*FLCPTR
Trigger: CCTTGTGGGACAGAGGAAGCAGCCGGAGGAGGAGAA...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCTTCTCCTCCTCCGGCTaGTTCCTCTGTCCCACAAGG +
Preference number: 2 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGFSSSG*FLCPTR
Trigger: CCTTGTGGGACAGAGGAAGCAGCCGGAGGAGGAGAA...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGAGACCTGGAAGGGTGTaGCTTCTGCTCACACCTCCC +
Preference number: 2 (lower is better)
Translates to: PAPHLPGDALHTLRQGTERPGRV*LLLTPP
Trigger: GGGAGGTGTGAGCAGAAGCCACACCCTTCCAGGTCT...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTGCCCTTGCAGAGACCTaGAAGGGTGTGGCTTCTGCT +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSALAET*KGVASA
Trigger: AGCAGAAGCCACACCCTTCCAGGTCTCTGCAAGGGC...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCGCCCTTGCAGAGACCTaGAAGGGTGTGGCTTCTGCT +
Preference number: 2 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGALAET*KGVASA
Trigger: AGCAGAAGCCACACCCTTCCAGGTCTCTGCAAGGGC...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGAAGCGCAGGCCCAGCTaGCCAATTGTGGGCGCGCCT +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLKRRPS*PIVGAP
Trigger: AGGCGCGCCCACAATTGGCCAGCTGGGCCTGCGCTT...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTCCAACTCCAGGTCTTTaGGGGAGGAACCCTGGTGAC +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSPTPGL*GRNPGD
Trigger: GTCACCAGGGTTCCTCCCCCAAAGACCTGGAGTTGG...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGCCCCTGGTCTCCTCTTaGGCCGGCAGGAGTGGTCCA +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLPLVSS*AGRSGP
Trigger: TGGACCACTCCTGCCGGCCCAAGAGGAGACCAGGGG...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCTCGGGGGAAATGCCTTaGCCAGGTACAAAAGTCCCT +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMISGEMP*PGTKVP
Trigger: AGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGA...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCCAGTGTAGAGCACCGTaGAGTGTGGTGCATAGCAAA +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIQCRAP*SVVHSK
Trigger: TTTGCTATGCACCACACTTCACGGTGCTCTACACTG...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTCACAGAAAAGCTTCCTaGAGCCAGCCAAGGACTGCT +
Preference number: 2 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSHRKAS*SQPRTA
Trigger: AGCAGTCCTTGGCTGGCTTCAGGAAGCTTTTCTGTG...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTGGCACTTCTCCTTCATaGTGTGGGGATTTCAGGGCC +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSGTSPS*CGDFRA
Trigger: GGCCCTGAAATCCCCACAGCATGAAGGAGAAGTGCC...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGACACCGTGAAGTGTGGTaGATAGCAAAAGGGGCACCG +
Preference number: 2 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGHREVW*IAKGAP
Trigger: CGGTGCCCCTTTTGCTATGCACCACACTTCACGGTG...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACTCTGCACTCACAGGCTaGGCATCAGCTGGCTGCCCT +
Preference number: 2 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYSALTG*ASAGCP
Trigger: AGGGCAGCCAGCTGATGCCCAGCCTGTGAGTGCAGA...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCAAGCGCAGGCCCAGCTaGCCAATTGTGGGCGCGCCT +
Preference number: 2 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTKRRPS*PIVGAP
Trigger: AGGCGCGCCCACAATTGGCCAGCTGGGCCTGCGCTT...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTCCCGTTGCTGACATCTaGCCACAGAAAAGCTTCCTG +
Preference number: 2 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSPVADI*PQKSFL
Trigger: CAGGAAGCTTTTCTGTGGCCAGATGTCAGCAACGGG...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCCGCGGCCTACATGTGTaGCCTCCGCTGGCTCTGTCT +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLRGLHV*PPLALS
Trigger: AGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCG...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGGGGCTGGCTTTGGTGTaGGTCACTGCCTTGCCTGCC +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLGLALV*VTALPA
Trigger: GGCAGGCAAGGCAGTGACCCACACCAAAGCCAGCCC...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTCAGAACCAAGGTTGCTaGCTTACCCCAAAGCAATCC +
Preference number: 2 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSQNQGC*LTPKQS
Trigger: GGATTGCTTTGGGGTAAGTCAGCAACCTTGGTTCTG...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTCACTACAGGAAGCTGTaGCATTGTTCAGGGCCCTCA +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSHYRKL*HCSGPS
Trigger: TGAGGGCCCTGAACAATGTCACAGCTTCCTGTAGTG...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCAGCACCAAGGAATGCTaGGATGGAGCAGAGCAAGGC +
Preference number: 2 (lower is better)
Translates to: PTLSPVGGNALARYKSPCSTKEC*DGAEQG
Trigger: GCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCT...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGGGAGACCAAGGCTGGTaGTGTCAGCAACAGAGCTTG +
Preference number: 2 (lower is better)
Translates to: LLSERASRMQQYDRMGCSGDQGW*CQQQSL
Trigger: CAAGCTCTGTTGCTGACAGCACCAGCCTTGGTCTCC...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCAGGCAGGTTCAGAGTTaGCTGAGGGCCCTGGCAGAG +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLRQVQS*LRALAE
Trigger: CTCTGCCAGGGCCCTCAGGCAACTCTGAACCTGCCT...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCACTGGAGACCAAGGCTaGTGCTGTCAGCAACAGAGC +
Preference number: 2 (lower is better)
Translates to: PTLSPVGGNALARYKSPCTGDQG*CCQQQS
Trigger: GCTCTGTTGCTGACAGCACCAGCCTTGGTCTCCAGT...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTGAGACAAAGTTCTGGTaGTGGAGAGAGATCTGGTTA +
Preference number: 2 (lower is better)
Translates to: TGWASAGCPPHREARVAAETKFW*WREIWL
Trigger: TAACCAGATCTCTCTCCACCACCAGAACTTTGTCTC...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGATTCTCCTTCATGCTGTaGGGATTTCAGGGCCCTTGC +
Preference number: 2 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGFSFML*GFQGPC
Trigger: GCAAGGGCCCTGAAATCCCCACAGCATGAAGGAGAA...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTGAGCACCGTGAAGTGTaGTGCATAGCAAAAGGGGCA +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSEHREV*CIAKGA
Trigger: TGCCCCTTTTGCTATGCACCACACTTCACGGTGCTC...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCGAGCACCGTGAAGTGTaGTGCATAGCAAAAGGGGCA +
Preference number: 2 (lower is better)
Translates to: EHQGMLRWSRARHTQAGREHREV*CIAKGA
Trigger: TGCCCCTTTTGCTATGCACCACACTTCACGGTGCTC...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGCGCCTTTTGGGCAAGTaGCACAGATGTGGTGGTTTG +
Preference number: 2 (lower is better)
Translates to: PAPHLPGDALHTLRQGTERLLGK*HRCGGL
Trigger: CAAACCACCACATCTGTGCCACTTGCCCAAAAGGCG...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCCGCCTTTTGGGCAAGTaGCACAGATGTGGTGGTTTG +
Preference number: 2 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRRLLGK*HRCGGL
Trigger: CAAACCACCACATCTGTGCCACTTGCCCAAAAGGCG...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTCAAGGAATGCTGAGATaGAGCAGAGCAAGGCACACC +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSQGMLR*SRARHT
Trigger: GGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTG...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTTTGTTAAGTCTGAAATaGTGCACAGCATCCATGAGC +
Preference number: 2 (lower is better)
Translates to: TGWASAGCPPHREARVAALLSLK*CTASMS
Trigger: GCTCATGGATGCTGTGCATCATTTCAGACTTAACAA...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CGGATGCAGCAGTATGACAGGATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCTTGTTAAGTCTGAAATaGTGCACAGCATCCATGAGC +
Preference number: 2 (lower is better)
Translates to: RMQQYDRMGCSLGPPACGLLSLK*CTASMS
Trigger: GCTCATGGATGCTGTGCATCATTTCAGACTTAACAA...GCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATACTGCTGCATCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCTGCCCTATTTTAGGGTaGAAACAATTGTTAAGTCTG +
Preference number: 2 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPCPILG*KQLLSL
Trigger: CAGACTTAACAATTGTTTTCACCCTAAAATAGGGCA...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCGTATGCCACCATCTCTaGGCACGGATGTTGCTTTCG +
Preference number: 2 (lower is better)
Translates to: PTLSPVGGNALARYKSPCVCHHL*ARMLLS
Trigger: CGAAAGCAACATCCGTGCTCAGAGATGGTGGCATAC...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGAGGTTCAGAGTTGCCTaGGGGCCCTGGCAGAGACAA +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLRFRVA*GPWQRQ
Trigger: TTGTCTCTGCCAGGGCCCTCAGGCAACTCTGAACCT...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTCATAGGAAGGAGCCTTaGCCAAGTCTCACTAAAAGG +
Preference number: 2 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSHRKEP*PSLTKR
Trigger: CCTTTTAGTGAGACTTGGTCAAGGCTCCTTCCTATG...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCCGGCCTCTTAAAAGATaGGCACTTGACACTTTTGCA +
Preference number: 2 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIRPLKR*ALDTFA
Trigger: TGCAAAAGTGTCAAGTGCTCATCTTTTAAGAGGCCG...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCCTCTGCTCTCCTGTGTaGGCCCAGCTCACACTCAGT +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLLCSPV*AQLTLS
Trigger: ACTGAGTGTGAGCTGGGCTCACACAGGAGAGCAGAG...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCTTCTCCTCCTCCGGCTaGTTCCTCTGTCCCACAAGG +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLFSSSG*FLCPTR
Trigger: CCTTGTGGGACAGAGGAAGCAGCCGGAGGAGGAGAA...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCAGGCAGGTTCAGAGTTaGCTGAGGGCCCTGGCAGAG +
Preference number: 2 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTRQVQS*LRALAE
Trigger: CTCTGCCAGGGCCCTCAGGCAACTCTGAACCTGCCT...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACGGATTTCAGGGCCCTTaGAGAGACCTGGAAGGGTGT +
Preference number: 2 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYGFQGP*RDLEGC
Trigger: ACACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCC...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCAAAGAACTTGAGCTCTaGGGTCTTTCCTTGTGGGCA +
Preference number: 2 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIKELEL*GLSLWA
Trigger: TGCCCACAAGGAAAGACCGCAGAGCTCAAGTTCTTT...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTAAAGAACTTGAGCTCTaGGGTCTTTCCTTGTGGGCA +
Preference number: 2 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSKELEL*GLSLWA
Trigger: TGCCCACAAGGAAAGACCGCAGAGCTCAAGTTCTTT...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACACTGGAGACCAAGGCTaGTGCTGTCAGCAACAGAGC +
Preference number: 2 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHTGDQG*CCQQQS
Trigger: GCTCTGTTGCTGACAGCACCAGCCTTGGTCTCCAGT...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCCACACCTCCCTCCCTTaGAGTGGGACTGAGCTGCTC +
Preference number: 2 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTHTSLP*SGTELL
Trigger: GAGCAGCTCAGTCCCACTCCAAGGGAGGGAGGTGTG...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGTGTGGGCGCGCCTTTTaGGCAAGTGGCACAGATGTG +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLCGRAF*ASGTDV
Trigger: CACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACA...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTCAGACACGATGCTGCTaGCCTACACCTGTTGATACT +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSQTRCC*PTPVDT
Trigger: AGTATCAACAGGTGTAGGCCAGCAGCATCGTGTCTG...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGCTGGAATGCTGGGCATaGGCTCTGCTCTCCTGTGTG +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLLECWA*ALLSCV
Trigger: CACACAGGAGAGCAGAGCCCATGCCCAGCATTCCAG...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCGCTGTCTTAGGGACATaGCGCCATCTGTGCACAGGC +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLAVLGT*RHLCTG
Trigger: GCCTGTGCACAGATGGCGCCATGTCCCTAAGACAGC...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCACCTCCCTCAGCTCATaGCTGTGCTGTCTGACTGTT +
Preference number: 2 (lower is better)
Translates to: PTLSPVGGNALARYKSPCTSLSS*LCCLTV
Trigger: AACAGTCAGACAGCACAGCCATGAGCTGAGGGAGGT...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGACTGGCCTACACCTGTTaGTACTGCACTGATTTCTCT +
Preference number: 2 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGLAYTC*YCTDFS
Trigger: AGAGAAATCAGTGCAGTATCAACAGGTGTAGGCCAG...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCCACATGTGGCTCTCCTaGCAGCCACTCGACCTCCTT +
Preference number: 2 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTHMWLS*QPLDLL
Trigger: AAGGAGGTCGAGTGGCTGGCAGGAGAGCCACATGTG...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCGGATTTCAGGGCCCTTaGAGAGACCTGGAAGGGTGT +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLGFQGP*RDLEGC
Trigger: ACACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCC...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGTGCACACATTGGTTTTaGCTAAGAAGCACCTGTCGC +
Preference number: 2 (lower is better)
Translates to: PAPHLPGDALHTLRQGTECTHWF*LRSTCR
Trigger: GCGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCA...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACTTCTCCTTCATGCTGTaGGGATTTCAGGGCCCTTGC +
Preference number: 2 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHFSFML*GFQGPC
Trigger: GCAAGGGCCCTGAAATCCCCACAGCATGAAGGAGAA...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCGTGGTTTGCACACATTaGTTTTGCCTAAGAAGCACC +
Preference number: 2 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIVVCTH*FCLRST
Trigger: GGTGCTTCTTAGGCAAAACCAATGTGTGCAAACCAC...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCGTGGCACAGATGTGGTaGTTTGCACACATTGGTTTT +
Preference number: 2 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIVAQMW*FAHIGF
Trigger: AAAACCAATGTGTGCAAACCACCACATCTGTGCCAC...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCCAAGTGGCACAGATGTaGTGGTTTGCACACATTGGT +
Preference number: 2 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRQVAQM*WFAHIG
Trigger: ACCAATGTGTGCAAACCACCACATCTGTGCCACTTG...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCCAAACGCTTCAGCCATaGAAGGGCAGGGTGAGTGCT +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLQTLQP*KGRVSA
Trigger: AGCACTCACCCTGCCCTTCCATGGCTGAAGCGTTTG...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACCCCGTTGCTGACATCTaGCCACAGAAAAGCTTCCTG +
Preference number: 2 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYPVADI*PQKSFL
Trigger: CAGGAAGCTTTTCTGTGGCCAGATGTCAGCAACGGG...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp GCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACATaGGTTTTGCCTAAGAAGCACCTGTCGCGTGTAGCACCCATCAGT +
Preference number: 2 (lower is better)
Translates to: ARLLGKWHRCGGLHT*VLPKKHLSRVAPIS
Trigger: ACTGATGGGTGCTACACGCGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCGAGATCTGGTTAAACTaGCACTTTCTAGAACCATGG +
Preference number: 2 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIEIWLN*HFLEPW
Trigger: CCATGGTTCTAGAAAGTGTCAGTTTAACCAGATCTC...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCACCTTTGAAAGAACTTaGGCTCTGCGGTCTTTCCTT +
Preference number: 2 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGTFERT*ALRSFL
Trigger: AAGGAAAGACCGCAGAGCTCAAGTTCTTTCAAAGGT...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCCACAGAAAAGCTTCCTaGAGCCAGCCAAGGACTGCT +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLHRKAS*SQPRTA
Trigger: AGCAGTCCTTGGCTGGCTTCAGGAAGCTTTTCTGTG...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGCACTACAGGAAGCTGTaGCATTGTTCAGGGCCCTCA +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLHYRKL*HCSGPS
Trigger: TGAGGGCCCTGAACAATGTCACAGCTTCCTGTAGTG...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp ATAATGGAGAGAAGCGGGGAGCAGAGGACAAACCAAACGCTTCAGCCATGGAAGCACATGTGGCTCTCCTaGCAGCCACTCGACCTCCTT +
Preference number: 2 (lower is better)
Translates to: IMERSGEQRTNQTLQPWKHMWLS*QPLDLL
Trigger: AAGGAGGTCGAGTGGCTGGCAGGAGAGCCACATGTG...CTTCCATGGCTGAAGCGTTTGGTTTGTCCTCTGCTCCCCGCTTCTCTCCATTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCGGCACTTCTCCTTCATaGTGTGGGGATTTCAGGGCC +
Preference number: 2 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTGTSPS*CGDFRA
Trigger: GGCCCTGAAATCCCCACAGCATGAAGGAGAAGTGCC...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTGAGACAAAGTTCTGGTaGTGGAGAGAGATCTGGTTA +
Preference number: 2 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSETKFW*WREIWL
Trigger: TAACCAGATCTCTCTCCACCACCAGAACTTTGTCTC...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGAGAGACAAAGTTCTGGTaGTGGAGAGAGATCTGGTTA +
Preference number: 2 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGETKFW*WREIWL
Trigger: TAACCAGATCTCTCTCCACCACCAGAACTTTGTCTC...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCGTGGCACAGATGTGGTaGTTTGCACACATTGGTTTT +
Preference number: 2 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRVAQMW*FAHIGF
Trigger: AAAACCAATGTGTGCAAACCACCACATCTGTGCCAC...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGAGTGGCACAGTGACCTaGGCTTGTAACCTCCTTTCC +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLSGTVT*ACNLLS
Trigger: GGAAAGGAGGTTACAAGCCCAGGTCACTGTGCCACT...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp CAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTaGCACACATTGGTTTTGCCTAAGAAGCACCTGTCGCGTGTAGCA +
Preference number: 2 (lower is better)
Translates to: QLWARLLGKWHRCGG*HTLVLPKKHLSRVA
Trigger: TGCTACACGCGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCCAGAACCAAGGTTGCTaGCTTACCCCAAAGCAATCC +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLQNQGC*LTPKQS
Trigger: GGATTGCTTTGGGGTAAGTCAGCAACCTTGGTTCTG...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp ATAATGGAGAGAAGCGGGGAGCAGAGGACAAACCAAACGCTTCAGCCATGGAAGGGATTTCAGGGCCCTTaGAGAGACCTGGAAGGGTGT +
Preference number: 2 (lower is better)
Translates to: IMERSGEQRTNQTLQPWKGFQGP*RDLEGC
Trigger: ACACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCC...CTTCCATGGCTGAAGCGTTTGGTTTGTCCTCTGCTCCCCGCTTCTCTCCATTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGACAGATGTGGTGGTTTaGACACATTGGTTTTGCCTA +
Preference number: 2 (lower is better)
Translates to: PAPHLPGDALHTLRQGTETDVVV*THWFCL
Trigger: TAGGCAAAACCAATGTGTGCAAACCACCACATCTGT...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCACAGATGTGGTGGTTTaGACACATTGGTTTTGCCTA +
Preference number: 2 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRTDVVV*THWFCL
Trigger: TAGGCAAAACCAATGTGTGCAAACCACCACATCTGT...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCTGTCAGACACGATGCTaGTGGCCTACACCTGTTGAT +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLCQTRC*WPTPVD
Trigger: ATCAACAGGTGTAGGCCAGCAGCATCGTGTCTGACA...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGACAAAGTTCTGGTGGTaGAGAGAGATCTGGTTAAAC +
Preference number: 2 (lower is better)
Translates to: PAPHLPGDALHTLRQGTETKFWW*REIWLN
Trigger: GTTTAACCAGATCTCTCTCCACCACCAGAACTTTGT...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCGAGCACCGTGAAGTGTaGTGCATAGCAAAAGGGGCA +
Preference number: 2 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTEHREV*CIAKGA
Trigger: TGCCCCTTTTGCTATGCACCACACTTCACGGTGCTC...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACAAACGCTTCAGCCATaGAAGGGCAGGGTGAGTGCT +
Preference number: 2 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTQTLQP*KGRVSA
Trigger: AGCACTCACCCTGCCCTTCCATGGCTGAAGCGTTTG...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp GGCCATGCAACTACCGGCCTCTTAAAAGATGAGCACTTGACACTTTaGCACAGCCAGGTACACACGCCGCATGACACCCCATACTTCTCA +
Preference number: 2 (lower is better)
Translates to: GHATTGLLKDEHLTL*HSQVHTPHDTPYFS
Trigger: TGAGAAGTATGGGGTGTCATGCGGCGTGTGTACCTGGCTGTGCAAAAGTGTCAAGTGCTCATCTTTTAAGAGGCCGGTAGTTGCATGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp AGAAGAGCATTAGAACACGGGACGCTAATCACTGGTCACGATCACTaGGACTGTCAAGATGGGGCCTCACAGCGAGCGGTTACTACAGAC +
Preference number: 2 (lower is better)
Translates to: RRALEHGTLITGHDH*DCQDGASQRAVTTD
Trigger: GTCTGTAGTAACCGCTCGCTGTGAGGCCCCATCTTGACAGTCCAAGTGATCGTGACCAGTGATTAGCGTCCCGTGTTCTAATGCTCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCGAGATCTGGTTAAACTaGCACTTTCTAGAACCATGG +
Preference number: 2 (lower is better)
Translates to: PTLSPVGGNALARYKSPCEIWLN*HFLEPW
Trigger: CCATGGTTCTAGAAAGTGTCAGTTTAACCAGATCTC...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCCAGTGTAGAGCACCGTaGAGTGTGGTGCATAGCAAA +
Preference number: 2 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTQCRAP*SVVHSK
Trigger: TTTGCTATGCACCACACTTCACGGTGCTCTACACTG...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACACAGAAAAGCTTCCTaGAGCCAGCCAAGGACTGCT +
Preference number: 2 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTHRKAS*SQPRTA
Trigger: AGCAGTCCTTGGCTGGCTTCAGGAAGCTTTTCTGTG...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCCAAGTGGCACAGATGTaGTGGTTTGCACACATTGGT +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLQVAQM*WFAHIG
Trigger: ACCAATGTGTGCAAACCACCACATCTGTGCCACTTG...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACGCCTTTTGGGCAAGTaGCACAGATGTGGTGGTTTG +
Preference number: 2 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTRLLGK*HRCGGL
Trigger: CAAACCACCACATCTGTGCCACTTGCCCAAAAGGCG...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp CTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACATTGGTTTaGCCTAAGAAGCACCTGTCGCGTGTAGCACCCATCAGTGTAGAG +
Preference number: 2 (lower is better)
Translates to: LLGKWHRCGGLHTLV*PKKHLSRVAPISVE
Trigger: CTCTACACTGATGGGTGCTACACGCGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 90 bp AAGAGGAGGGCACCTTTGAAAGAACTTGAGCTCTGCGGTCTTTCCTaGTGGGCAGAACCAAGGTTGCTGACTTACCCCAAAGCAATCCCA +
Preference number: 2 (lower is better)
Translates to: KRRAPLKELELCGLS*WAEPRLLTYPKAIP
Trigger: TGGGATTGCTTTGGGGTAAGTCAGCAACCTTGGTTCTGCCCACAAGGAAAGACCGCAGAGCTCAAGTTCTTTCAAAGGTGCCCTCCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGCGGCCTCTTAAAAGATaGGCACTTGACACTTTTGCA +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLRPLKR*ALDTFA
Trigger: TGCAAAAGTGTCAAGTGCTCATCTTTTAAGAGGCCG...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACATGTCAGACACGATGCTaGTGGCCTACACCTGTTGAT +
Preference number: 2 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTCQTRC*WPTPVD
Trigger: ATCAACAGGTGTAGGCCAGCAGCATCGTGTCTGACA...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATTCTGCACTCACAGGCTaGGCATCAGCTGGCTGCCCT +
Preference number: 2 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDSALTG*ASAGCP
Trigger: AGGGCAGCCAGCTGATGCCCAGCCTGTGAGTGCAGA...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGGTGGTTTGCACACATTaGTTTTGCCTAAGAAGCACC +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLVVCTH*FCLRST
Trigger: GGTGCTTCTTAGGCAAAACCAATGTGTGCAAACCAC...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCGTGGTTTGCACACATTaGTTTTGCCTAAGAAGCACC +
Preference number: 2 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLVVCTH*FCLRST
Trigger: GGTGCTTCTTAGGCAAAACCAATGTGTGCAAACCAC...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATCCAGCTGGCCAATTGTaGGCGCGCCTTTTGGGCAAG +
Preference number: 2 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDPAGQL*ARLLGK
Trigger: CTTGCCCAAAAGGCGCGCCCACAATTGGCCAGCTGG...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGTTGTTAAGTCTGAAATaGTGCACAGCATCCATGAGC +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLLLSLK*CTASMS
Trigger: GCTCATGGATGCTGTGCATCATTTCAGACTTAACAA...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGGAGATCTGGTTAAACTaGCACTTTCTAGAACCATGG +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLEIWLN*HFLEPW
Trigger: CCATGGTTCTAGAAAGTGTCAGTTTAACCAGATCTC...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACATGCACACATTGGTTTTaGCTAAGAAGCACCTGTCGC +
Preference number: 2 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTCTHWF*LRSTCR
Trigger: GCGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCA...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGCTTGGAGAAAACAGCTaGTATGGGTGTGCAAATAGA +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLLGENS*YGCANR
Trigger: TCTATTTGCACACCCATAGCAGCTGTTTTCTCCAAG...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATGCCCTTGCAGAGACCTaGAAGGGTGTGGCTTCTGCT +
Preference number: 2 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDALAET*KGVASA
Trigger: AGCAGAAGCCACACCCTTCCAGGTCTCTGCAAGGGC...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATTGCCCTATTTTAGGGTaGAAACAATTGTTAAGTCTG +
Preference number: 2 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDCPILG*KQLLSL
Trigger: CAGACTTAACAATTGTTTTCACCCTAAAATAGGGCA...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACAACCTTTGAAAGAACTTaGGCTCTGCGGTCTTTCCTT +
Preference number: 2 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTTFERT*ALRSFL
Trigger: AAGGAAAGACCGCAGAGCTCAAGTTCTTTCAAAGGT...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATCACCGTGAAGTGTGGTaGATAGCAAAAGGGGCACCG +
Preference number: 2 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDHREVW*IAKGAP
Trigger: CGGTGCCCCTTTTGCTATGCACCACACTTCACGGTG...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATACTGGAGACCAAGGCTaGTGCTGTCAGCAACAGAGC +
Preference number: 2 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDTGDQG*CCQQQS
Trigger: GCTCTGTTGCTGACAGCACCAGCCTTGGTCTCCAGT...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR TCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATGTATGCCACCATCTCTaGGCACGGATGTTGCTTTCG +
Preference number: 2 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDVCHHL*ARMLLS
Trigger: CGAAAGCAACATCCGTGCTCAGAGATGGTGGCATAC...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACAACAGATGTGGTGGTTTaGACACATTGGTTTTGCCTA +
Preference number: 2 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTTDVVV*THWFCL
Trigger: TAGGCAAAACCAATGTGTGCAAACCACCACATCTGT...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGACAGTTACCGAGAAATaGAATAGACACAACACACTA +
Preference number: 2 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLTVTEK*NRHNTL
Trigger: TAGTGTGTTGTGTCTATTGCATTTCTCGGTAACTGT...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACAACAAAGTTCTGGTGGTaGAGAGAGATCTGGTTAAAC +
Preference number: 2 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTTKFWW*REIWLN
Trigger: GTTTAACCAGATCTCTCTCCACCACCAGAACTTTGT...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATTTCTCCTTCATGCTGTaGGGATTTCAGGGCCCTTGC +
Preference number: 2 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDFSFML*GFQGPC
Trigger: GCAAGGGCCCTGAAATCCCCACAGCATGAAGGAGAA...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR GCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATTGCACACATTGGTTTTaGCTAAGAAGCACCTGTCGC +
Preference number: 2 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDCTHWF*LRSTCR
Trigger: GCGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCA...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp GCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTaGCTATCCCCGGACACCGACACTGGAGACCAAGGC +
Preference number: 3 (lower is better)
Translates to: ARWGLLPAARVT*LSPDTDTGDQG
Trigger: GCCTTGGTCTCCAGTGTCGGTGTCCGGGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp CGTGCGACCATGGGGAGAGCCCAGAGGCAGGCAGTCTaGAGCGCAGGCCCAGCTGGCCAATTGTGGGCGCGC +
Preference number: 3 (lower is better)
Translates to: RATMGRAQRQAV*SAGPAGQLWAR
Trigger: GCGCGCCCACAATTGGCCAGCTGGGCCTGCGCTTCAGACTGCCTGCCTCTGGGCTCTCCCCATGGTCGCACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp CGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATaGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGG +
Preference number: 3 (lower is better)
Translates to: RSALAGCSSMTG*DARWGLLPAAR
Trigger: CCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp AGGGCGGGCCTCTGCACTCACAGGCTGGGCATCAGCTaGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGC +
Preference number: 3 (lower is better)
Translates to: RAGLCTHRLGIS*LPSSQGGQGCC
Trigger: GCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGTGAGTGCAGAGGCCCGCCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp GGTTGGGGGATGGGCTCCTGGACGCCACAGTCCTCGTaGCTAGCAGCAGCAGCCGGGGTGGGAGAGCTGGCA +
Preference number: 3 (lower is better)
Translates to: GWGMGSWTPQSS*LAAAAGVGELA
Trigger: TGCCAGCTCTCCCACCCCGGCTGCTGCTGCTAGCCACGAGGACTGTGGCGTCCAGGAGCCCATCCCCCAACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp GGTTGCTGCTGCCAGCCCGGGCAGGCCCCAGACCAGTaGTCTCGGGAACGCTTGGGACTAGGGCACTTCTCC +
Preference number: 3 (lower is better)
Translates to: GCCCQPGQAPDQ*SRERLGLGHFS
Trigger: GGAGAAGTGCCCTAGTCCCAAGCGTTCCCGAGACCACTGGTCTGGGGCCTGCCCGGGCTGGCAGCAGCAACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp TATGACAGGATGGGATGCTCGCTGGGGCCTCCTGCCTaGGGCACGGGTCACCTGCCTATCCCCGGACACCGA +
Preference number: 3 (lower is better)
Translates to: YDRMGCSLGPPA*GTGHLPIPGHR
Trigger: TCGGTGTCCGGGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp GCACACCCAGGACAGATGGCAGCACCAGAGACAAGGTaGGCTACCGGGCACCAACCCAGCTGTCCCCGTGCG +
Preference number: 3 (lower is better)
Translates to: AHPGQMAAPETR*ATGHQPSCPRA
Trigger: CGCACGGGGACAGCTGGGTTGGTGCCCGGTAGCCCACCTTGTCTCTGGTGCTGCCATCTGTCCTGGGTGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GCCCCACACCCCCGGGTGGTGAGCACCAAGGAATGCTaGGATGGAGCAGAGCAAGGCACACCCAGGCAGGAC +
Preference number: 3 (lower is better)
Translates to: APHPRVVSTKEC*DGAEQGTPRQD
Trigger: GTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTCACCACCCGGGGGTGTGGGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTaGAGGAGGCTCGGCCAGGGCACCCCAGGCTACCTT +
Preference number: 3 (lower is better)
Translates to: VWPPLALSIPKR*RRLGQGTPGYL
Trigger: AAGGTAGCCTGGGGTGCCCTGGCCGAGCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp AGCCCAGAGGCAGGCAGTCTGAAGCGCAGGCCCAGCTaGCCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCA +
Preference number: 3 (lower is better)
Translates to: SPEAGSLKRRPS*PIVGAPFGQVA
Trigger: TGCCACTTGCCCAAAAGGCGCGCCCACAATTGGCCAGCTGGGCCTGCGCTTCAGACTGCCTGCCTCTGGGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp ATGCTGCTGACCCTGGCACTCCCCCTGGTCTCCTCTTaGGCCGGCAGGAGTGGTCCACCTAGGACCCCGTTA +
Preference number: 3 (lower is better)
Translates to: MLLTLALPLVSS*AGRSGPPRTPL
Trigger: TAACGGGGTCCTAGGTGGACCACTCCTGCCGGCCCAAGAGGAGACCAGGGGGAGTGCCAGGGTCAGCAGCAT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GGCAGGGCTCCAGGCTTCTCATCACAGTGGGAACAGTaGGCTGAGAGGGCGGGCCTCTGCACTCACAGGCTG +
Preference number: 3 (lower is better)
Translates to: GRAPGFSSQWEQ*AERAGLCTHRL
Trigger: CAGCCTGTGAGTGCAGAGGCCCGCCCTCTCAGCTCACTGTTCCCACTGTGATGAGAAGCCTGGAGCCCTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp GGAGCAGAGCAAGGCACACCCAGGCAGGACGCAGCCTaGTCCACACCTCCCAGGAGATGCCCTTCACACACT +
Preference number: 3 (lower is better)
Translates to: GAEQGTPRQDAA*STPPRRCPSHT
Trigger: AGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGGCTGCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp ACACCCCCGGGTGGTGAGCACCAAGGAATGCTGAGATaGAGCAGAGCAAGGCACACCCAGGCAGGACGCAGC +
Preference number: 3 (lower is better)
Translates to: TPPGGEHQGMLR*SRARHTQAGRS
Trigger: GCTGCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTCACCACCCGGGGGTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCGGCCCAGCTGGCCAATaGTGGGCGCGCCTTTTGGGC +
Preference number: 3 (lower is better)
Translates to: PTLSPVGGNALARYKSPCGPAGQ*WARLLG
Trigger: GCCCAAAAGGCGCGCCCACAATTGGCCAGCTGGGCC...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACGGCCCAGCTGGCCAATaGTGGGCGCGCCTTTTGGGC +
Preference number: 3 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYGPAGQ*WARLLG
Trigger: GCCCAAAAGGCGCGCCCACAATTGGCCAGCTGGGCC...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GCTCGGCCAGGGCACCCCAGGCTACCTTCTTCTCCCTaGCCAACGAAGGTGGAAGGCCCTGGGTTGTTACTG +
Preference number: 3 (lower is better)
Translates to: ARPGHPRLPSSP*PTKVEGPGLLL
Trigger: CAGTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGGGGTGCCCTGGCCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp TGCCCAAGCAGACAACAGGCTAGGATAGGTCCAGGTTaGGGGATGGGCTCCTGGACGCCACAGTCCTCGTGG +
Preference number: 3 (lower is better)
Translates to: CPSRQQARIGPG*GMGSWTPQSSW
Trigger: CCACGAGGACTGTGGCGTCCAGGAGCCCATCCCCCAACCTGGACCTATCCTAGCCTGTTGTCTGCTTGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCCAGGCAGGTTCAGAGTaGCCTGAGGGCCCTGGCAGA +
Preference number: 3 (lower is better)
Translates to: PTLSPVGGNALARYKSPCQAGSE*PEGPGR
Trigger: TCTGCCAGGGCCCTCAGGCAACTCTGAACCTGCCTG...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGAGGGATTTCAGGGCCCTaGCAGAGACCTGGAAGGGTG +
Preference number: 3 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGGISGP*QRPGRV
Trigger: CACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCCC...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCCCCCCGTGGGCACATTaGAGCTTGGAGAAAACAGCT +
Preference number: 3 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIPPWAH*SLEKTA
Trigger: AGCTGTTTTCTCCAAGCTCAAATGTGCCCACGGGGG...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
61% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GAAGCCAGGAGGGCCACCTCGCATAGGAAGGAGCCTTaGCCAAGTCTCACTAAAAGGGAGGACGGGCCCGAG +
Preference number: 3 (lower is better)
Translates to: EARRATSHRKEP*PSLTKREDGPE
Trigger: CTCGGGCCCGTCCTCCCTTTTAGTGAGACTTGGTCAAGGCTCCTTCCTATGCGAGGTGGCCCTCCTGGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATaGTCACCTCACCTGATCAGACCCCCGTGGGCACAT +
Preference number: 3 (lower is better)
Translates to: GGRAGNGWVTCQ*SPHLIRPPWAH
Trigger: ATGTGCCCACGGGGGTCTGATCAGGTGAGGTGATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp GATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATaGTGGGCATGGGCTCTGCTCTCCTGTGTGAGCCCA +
Preference number: 3 (lower is better)
Translates to: DADPLTALCFLE*WAWALLSCVSP
Trigger: TGGGCTCACACAGGAGAGCAGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp GCGCAGGCCCAGCTGGCCAATTGTGGGCGCGCCTTTTaGGCAAGTGGCACAGATGTGGTGGTTTGCACACAT +
Preference number: 3 (lower is better)
Translates to: AQAQLANCGRAF*ASGTDVVVCTH
Trigger: ATGTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGGCCAGCTGGGCCTGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACCAGGCAGGTTCAGAGTaGCCTGAGGGCCCTGGCAGA +
Preference number: 3 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYQAGSE*PEGPGR
Trigger: TCTGCCAGGGCCCTCAGGCAACTCTGAACCTGCCTG...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCGGGATTTCAGGGCCCTaGCAGAGACCTGGAAGGGTG +
Preference number: 3 (lower is better)
Translates to: PTLSPVGGNALARYKSPCGISGP*QRPGRV
Trigger: CACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCCC...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GGCTTCTGCTCACACCTCCCTCCCTTGGAGTGGGACTaGGCTGCTCTTAGGGGCCTACGGTTGGAATCTGTG +
Preference number: 3 (lower is better)
Translates to: GFCSHLPPLEWD*AALRGLRLESV
Trigger: CACAGATTCCAACCGTAGGCCCCTAAGAGCAGCTCAGTCCCACTCCAAGGGAGGGAGGTGTGAGCAGAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp CTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTaGGACAGGGCACAGAGGGGCAAGCTTGCCCACTAT +
Preference number: 3 (lower is better)
Translates to: LLHTSQEMPFTH*DRAQRGKLAHY
Trigger: ATAGTGGGCAAGCTTGCCCCTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp AGACGTGGTGCGGTTAGGGAATTGGATCATACCCGCTaGTTGGGTGCTGGGGCATGCTCAGCTGTAGGGCTG +
Preference number: 3 (lower is better)
Translates to: RRGAVRELDHTR*LGAGACSAVGL
Trigger: CAGCCCTACAGCTGAGCATGCCCCAGCACCCAAGCAGCGGGTATGATCCAATTCCCTAACCGCACCACGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCAAGAGGAGGGCACCTTaGAAAGAACTTGAGCTCTGC +
Preference number: 3 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIKRRAP*KELELC
Trigger: GCAGAGCTCAAGTTCTTTCAAAGGTGCCCTCCTCTT...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCACAGGGATGGCCCCGTaGCTGACATCTGGCCACAGA +
Preference number: 3 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLTGMAP*LTSGHR
Trigger: TCTGTGGCCAGATGTCAGCAACGGGGCCATCCCTGT...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCCAGGAAGCTGTGACATaGTTCAGGGCCCTCATCCCA +
Preference number: 3 (lower is better)
Translates to: PTLSPVGGNALARYKSPCQEAVT*FRALIP
Trigger: TGGGATGAGGGCCCTGAACAATGTCACAGCTTCCTG...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp GCAGGAGTGGTCCACCTAGGACCCCGTTACTTGGCGTaGCCAGACATCCTCATCTTTGCTGGATGCTGTCCA +
Preference number: 3 (lower is better)
Translates to: AGVVHLGPRYLA*PDILIFAGCCP
Trigger: TGGACAGCATCCAGCAAAGATGAGGATGTCTGGGCACGCCAAGTAACGGGGTCCTAGGTGGACCACTCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp CAGGTACACACGCCGCATGACACCCCATACTTCTCATaGCCAGGACCCTGTGATATGGTGAGGGCTAGCTGC +
Preference number: 3 (lower is better)
Translates to: QVHTPHDTPYFS*PGPCDMVRASC
Trigger: GCAGCTAGCCCTCACCATATCACAGGGTCCTGGCCATGAGAAGTATGGGGTGTCATGCGGCGTGTGTACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp ACCACATATTTCAAAGGGATCTGGTGGGGGTGGGTCTaGAGGCCCTGCTGGAGGCTGCCCAGTCCTTGGAAT +
Preference number: 3 (lower is better)
Translates to: TTYFKGIWWGWV*RPCWRLPSPWN
Trigger: ATTCCAAGGACTGGGCAGCCTCCAGCAGGGCCTTCAGACCCACCCCCACCAGATCCCTTTGAAATATGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp CTATCCCCGGACACCGACACTGGAGACCAAGGCTGGTaGTGTCAGCAACAGAGCTTGTCTAAACATGGGGCA +
Preference number: 3 (lower is better)
Translates to: LSPDTDTGDQGW*CQQQSLSKHGA
Trigger: TGCCCCATGTTTAGACAAGCTCTGTTGCTGACAGCACCAGCCTTGGTCTCCAGTGTCGGTGTCCGGGGATAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp CAAGTACCGTATGCCACCATCTCTGAGCACGGATGTTaGTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATG +
Preference number: 3 (lower is better)
Translates to: QVPYATISEHGC*FRSALAGCSSM
Trigger: CATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCCGTGCTCAGAGATGGTGGCATACGGTACTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp CACTTCTCCTTCATGCTGTGGGGATTTCAGGGCCCTTaGAGAGACCTGGAAGGGTGTGGCTTCTGCTCACAC +
Preference number: 3 (lower is better)
Translates to: HFSFMLWGFQGP*RDLEGCGFCSH
Trigger: GTGTGAGCAGAAGCCACACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCCCCACAGCATGAAGGAGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp ATGCTCAGCTGTAGGGCTGGCTTTGGTGTGGGTCACTaGCTTGCCTGCCTACCTAGTAATGGTGCCCAAGCA +
Preference number: 3 (lower is better)
Translates to: MLSCRAGFGVGH*LACLPSNGAQA
Trigger: TGCTTGGGCACCATTACTAGGTAGGCAGGCAAGGCAGTGACCCACACCAAAGCCAGCCCTACAGCTGAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp TGCCTATCCCCGGACACCGACACTGGAGACCAAGGCTaGTGCTGTCAGCAACAGAGCTTGTCTAAACATGGG +
Preference number: 3 (lower is better)
Translates to: CLSPDTDTGDQG*CCQQQSLSKHG
Trigger: CCCATGTTTAGACAAGCTCTGTTGCTGACAGCACCAGCCTTGGTCTCCAGTGTCGGTGTCCGGGGATAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGTGTCAGCAACAGAGCTaGTCTAAACATGGGGCAGAA +
Preference number: 3 (lower is better)
Translates to: PAPHLPGDALHTLRQGTECQQQS*SKHGAE
Trigger: TTCTGCCCCATGTTTAGACAAGCTCTGTTGCTGACA...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTTGTCAGCAACAGAGCTaGTCTAAACATGGGGCAGAA +
Preference number: 3 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSCQQQS*SKHGAE
Trigger: TTCTGCCCCATGTTTAGACAAGCTCTGTTGCTGACA...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGTTGCACACATTGGTTTaGCCTAAGAAGCACCTGTCG +
Preference number: 3 (lower is better)
Translates to: PAPHLPGDALHTLRQGTELHTLV*PKKHLS
Trigger: CGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCAA...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGACACAGATGTGGTGGTTaGCACACATTGGTTTTGCCT +
Preference number: 3 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGHRCGG*HTLVLP
Trigger: AGGCAAAACCAATGTGTGCAAACCACCACATCTGTG...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCAAGAGGAGGGCACCTTaGAAAGAACTTGAGCTCTGC +
Preference number: 3 (lower is better)
Translates to: PTLSPVGGNALARYKSPCKRRAP*KELELC
Trigger: GCAGAGCTCAAGTTCTTTCAAAGGTGCCCTCCTCTT...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGGTGTGGGTCACTGCCTaGCCTGCCTACCTAGTAATG +
Preference number: 3 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLVWVTA*PAYLVM
Trigger: CATTACTAGGTAGGCAGGCAAGGCAGTGACCCACAC...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp CCCCATACTTCTCATGGCCAGGACCCTGTGATATGGTaGGGGCTAGCTGCTAGGACTGGTAGCCACAGCTAT +
Preference number: 3 (lower is better)
Translates to: PHTSHGQDPVIW*GLAARTGSHSY
Trigger: ATAGCTGTGGCTACCAGTCCTAGCAGCTAGCCCTCACCATATCACAGGGTCCTGGCCATGAGAAGTATGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp AAGCAGACACCTCCCTCAGCTCATGGCTGTGCTGTCTaGCTGTTGTGCTGTCTTAGGGACATGGCGCCATCT +
Preference number: 3 (lower is better)
Translates to: KQTPPSAHGCAV*LLCCLRDMAPS
Trigger: AGATGGCGCCATGTCCCTAAGACAGCACAACAGTCAGACAGCACAGCCATGAGCTGAGGGAGGTGTCTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCTGTCAGCAACAGAGCTaGTCTAAACATGGGGCAGAA +
Preference number: 3 (lower is better)
Translates to: PTLSPVGGNALARYKSPCCQQQS*SKHGAE
Trigger: TTCTGCCCCATGTTTAGACAAGCTCTGTTGCTGACA...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp ATAATGGAGAGAAGCGGGGAGCAGAGGACAAACCAAACGCTTCAGCCATGGAAGTTGTGGGCGCGCCTTTaGGGCAAGTGGCACAGATGT +
Preference number: 3 (lower is better)
Translates to: IMERSGEQRTNQTLQPWKLWARL*GKWHRC
Trigger: ACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAA...CTTCCATGGCTGAAGCGTTTGGTTTGTCCTCTGCTCCCCGCTTCTCTCCATTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GGCCTAGAGGAAGAGGAGGGCACCTTTGAAAGAACTTaGGCTCTGCGGTCTTTCCTTGTGGGCAGAACCAAG +
Preference number: 3 (lower is better)
Translates to: GLEEEEGTFERT*ALRSFLVGRTK
Trigger: CTTGGTTCTGCCCACAAGGAAAGACCGCAGAGCTCAAGTTCTTTCAAAGGTGCCCTCCTCTTCCTCTAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp GCTAATCACTGGTCACGATCACTTGGACTGTCAAGATaGGGCCTCACAGCGAGCGGTTACTACAGACGGCAT +
Preference number: 3 (lower is better)
Translates to: ANHWSRSLGLSR*GLTASGYYRRH
Trigger: ATGCCGTCTGTAGTAACCGCTCGCTGTGAGGCCCCATCTTGACAGTCCAAGTGATCGTGACCAGTGATTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GAACGGAACTTTAGAACAGTCTGCAGCTGTCTGCACTaGCCCCAACCTACTCAGTCAGAGCGCCCACAGATT +
Preference number: 3 (lower is better)
Translates to: ERNFRTVCSCLH*PQPTQSERPQI
Trigger: AATCTGTGGGCGCTCTGACTGAGTAGGTTGGGGTCAGTGCAGACAGCTGCAGACTGTTCTAAAGTTCCGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp GATAAGAACGGAACTTTAGAACAGTCTGCAGCTGTCTaGACTGACCCCAACCTACTCAGTCAGAGCGCCCAC +
Preference number: 3 (lower is better)
Translates to: DKNGTLEQSAAV*TDPNLLSQSAH
Trigger: GTGGGCGCTCTGACTGAGTAGGTTGGGGTCAGTGCAGACAGCTGCAGACTGTTCTAAAGTTCCGTTCTTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGGGTGGTTTGCACACATaGGTTTTGCCTAAGAAGCAC +
Preference number: 3 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLGGLHT*VLPKKH
Trigger: GTGCTTCTTAGGCAAAACCAATGTGTGCAAACCACC...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACTTAAAAGATGAGCACTaGACACTTTTGCACAGCCAG +
Preference number: 3 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYLKDEH*TLLHSQ
Trigger: CTGGCTGTGCAAAAGTGTCAAGTGCTCATCTTTTAA...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp GCTGTGCTGTCTGACTGTTGTGCTGTCTTAGGGACATaGCGCCATCTGTGCACAGGCTACTTTAGAAAGGAA +
Preference number: 3 (lower is better)
Translates to: AVLSDCCAVLGT*RHLCTGYFRKE
Trigger: TTCCTTTCTAAAGTAGCCTGTGCACAGATGGCGCCATGTCCCTAAGACAGCACAACAGTCAGACAGCACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACAGGTGGTTTGCACACATaGGTTTTGCCTAAGAAGCAC +
Preference number: 3 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTGGLHT*VLPKKH
Trigger: GTGCTTCTTAGGCAAAACCAATGTGTGCAAACCACC...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp ATAATGGAGAGAAGCGGGGAGCAGAGGACAAACCAAACGCTTCAGCCATGGAAGCACAGATGTGGTGGTTaGCACACATTGGTTTTGCCT +
Preference number: 3 (lower is better)
Translates to: IMERSGEQRTNQTLQPWKHRCGG*HTLVLP
Trigger: AGGCAAAACCAATGTGTGCAAACCACCACATCTGTG...CTTCCATGGCTGAAGCGTTTGGTTTGTCCTCTGCTCCCCGCTTCTCTCCATTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp AGAAATGCAATAGACACAACACACTACAGGAAGCTGTaGCATTGTTCAGGGCCCTCATCCCAGGGGAGCAGT +
Preference number: 3 (lower is better)
Translates to: RNAIDTTHYRKL*HCSGPSSQGSS
Trigger: ACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCACAGCTTCCTGTAGTGTGTTGTGTCTATTGCATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp CCTTTGAAAGAACTTGAGCTCTGCGGTCTTTCCTTGTaGGCAGAACCAAGGTTGCTGACTTACCCCAAAGCA +
Preference number: 3 (lower is better)
Translates to: PLKELELCGLSL*AEPRLLTYPKA
Trigger: TGCTTTGGGGTAAGTCAGCAACCTTGGTTCTGCCCACAAGGAAAGACCGCAGAGCTCAAGTTCTTTCAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp ACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTaGGTTGTTACTGACACAAGCTTTCAGCTATTCACA +
Preference number: 3 (lower is better)
Translates to: TFFSLTNEGGRP*VVTDTSFQLFT
Trigger: TGTGAATAGCTGAAAGCTTGTGTCAGTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp TTGCTGGATGCTGTCCACTGGTTGCCAGGTCTGCCGTaGGTGACTGCTATGTATACTGTTCAGTTAATGTCA +
Preference number: 3 (lower is better)
Translates to: LLDAVHWLPGLP*VTAMYTVQLMS
Trigger: TGACATTAACTGAACAGTATACATAGCAGTCACCCACGGCAGACCTGGCAACCAGTGGACAGCATCCAGCAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR-3UTR CAA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATAAGAGGAGGGCACCTTaGAAAGAACTTGAGCTCTGC +
Preference number: 3 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDKRRAP*KELELC
Trigger: GCAGAGCTCAAGTTCTTTCAAAGGTGCCCTCCTCTT...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CCA 72 bp AAGGACAGACATGCTTTTTGTCAGACACGATGCTGCTaGCCTACACCTGTTGATACTGCACTGATTTCTCTG +
Preference number: 3 (lower is better)
Translates to: KDRHAFCQTRCC*PTPVDTALISL
Trigger: CAGAGAAATCAGTGCAGTATCAACAGGTGTAGGCCAGCAGCATCGTGTCTGACAAAAAGCATGTCTGTCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR TCA 72 bp GCTATGGGTGTGCAAATAGAAGATAGAGTCTTGGTCTaGGGAGATTCGAGAGTCAGACCCTCATTTGTCACA +
Preference number: 3 (lower is better)
Translates to: AMGVQIEDRVLV*GDSRVRPSFVT
Trigger: TGTGACAAATGAGGGTCTGACTCTCGAATCTCCTCAGACCAAGACTCTATCTTCTATTTGCACACCCATAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp ACTAAGGACAGACATGCTTTTTGTCAGACACGATGCTaGTGGCCTACACCTGTTGATACTGCACTGATTTCT +
Preference number: 3 (lower is better)
Translates to: TKDRHAFCQTRC*WPTPVDTALIS
Trigger: AGAAATCAGTGCAGTATCAACAGGTGTAGGCCAGCAGCATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp GAAACTAAGGACAGACATGCTTTTTGTCAGACACGATaGTGCTGGCCTACACCTGTTGATACTGCACTGATT +
Preference number: 3 (lower is better)
Translates to: ETKDRHAFCQTR*CWPTPVDTALI
Trigger: AATCAGTGCAGTATCAACAGGTGTAGGCCAGCAGCATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR GCA 72 bp GGCAAGCTTGCCCACTATTCTACAGTTACCGAGAAATaGAATAGACACAACACACTACAGGAAGCTGTGACA +
Preference number: 3 (lower is better)
Translates to: GKLAHYSTVTEK*NRHNTLQEAVT
Trigger: TGTCACAGCTTCCTGTAGTGTGTTGTGTCTATTGCATTTCTCGGTAACTGTAGAATAGTGGGCAAGCTTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCACTTGGCTCTTGCAGTaGCTGCACGTGGCCTCGCGG +
Preference number: 4 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPTWLLQ*LHVASR
Trigger: CCGCGAGGCCACGTGCAGTCACTGCAAGAGCCAAGT...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCGCGGTCTCGAGGACCTaGAACCGCAGGTCCATGTCG +
Preference number: 4 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPAVSRT*NRRSMS
Trigger: CGACATGGACCTGCGGTTCCAGGTCCTCGAGACCGC...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCGCTTCCTCCCAGTTCTaGCGGAAGGGACGGATCTCC +
Preference number: 4 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPASSQF*RKGRIS
Trigger: GGAGATCCGTCCCTTCCGGCAGAACTGGGAGGAAGC...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCCTCAACATCTGGTCATaGCGGCTCAGCTGGGACTCC +
Preference number: 4 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPLNIWS*RLSWDS
Trigger: GGAGTCCCAGCTGAGCCGGCATGACCAGATGTTGAG...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp CCCGGGCAGGCCCCAGACCAGTGGTCTCGGGAACGCTaGGGACTAGGGCACTTCTCCTTCATGCTGTGGGGA +
Preference number: 4 (lower is better)
Translates to: PGQAPDQWSRER*GLGHFSFMLWG
Trigger: TCCCCACAGCATGAAGGAGAAGTGCCCTAGTCCCAAGCGTTCCCGAGACCACTGGTCTGGGGCCTGCCCGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTTGGCCACACTCCGTCTaGTTCGGGTTGCACAGCACC +
Preference number: 4 (lower is better)
Translates to: TGWASAGCPPHREARVAAWPHSV*FGLHST
Trigger: GGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCA...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CGGATGCAGCAGTATGACAGGATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCCTCTCGCAGAACCGGTaGCCACACTCCGTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: RMQQYDRMGCSLGPPACGLSQNR*PHSVCF
Trigger: GAAGCAGACGGAGTGTGGCCACCGGTTCTGCGAGAG...GCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATACTGCTGCATCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTGGCTCTTGCAGTGACTaGACGTGGCCTCGCGGTATT +
Preference number: 4 (lower is better)
Translates to: TGWASAGCPPHREARVAAGSCSD*TWPRGI
Trigger: AATACCGCGAGGCCACGTGCAGTCACTGCAAGAGCC...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCTTGGGCGACAAAGACTaGGCAGCCAGAGGCGATATT +
Preference number: 4 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPLGDKD*AARGDI
Trigger: AATATCGCCTCTGGCTGCCCAGTCTTTGTCGCCCAA...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp CGGATGCAGCAGTATGACAGGATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCTGGCCTCATGGGCCTTaGTCTGCTGGTTTGTACCCT +
Preference number: 4 (lower is better)
Translates to: RMQQYDRMGCSLGPPACGWPHGP*SAGLYP
Trigger: AGGGTACAAACCAGCAGATCAAGGCCCATGAGGCCA...GCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATACTGCTGCATCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGCCGTCTGCTTCGGGTTaGACAGCACCAGGCGGCACT +
Preference number: 4 (lower is better)
Translates to: PAPHLPGDALHTLRQGTEPSASG*TAPGGT
Trigger: AGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGG...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCTCAGCAGGGCGGCCATaGAGCTCTCGCAGAACCGGT +
Preference number: 4 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRSAGRP*SSRRTG
Trigger: ACCGGTTCTGCGAGAGCTGCATGGCCGCCCTGCTGA...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CTCCGGCTGCTTCCTCTGTCCCACAAGGTCCTTTCTGAGGGCGAGGACCTCCGTGCTTCCTCCCAGTTCTaGCGGAAGGGACGGATCTCC +
Preference number: 4 (lower is better)
Translates to: LRLLPLSHKVLSEGEDLRASSQF*RKGRIS
Trigger: GGAGATCCGTCCCTTCCGGCAGAACTGGGAGGAAGC...ACGGAGGTCCTCGCCCTCAGAAAGGACCTTGTGGGACAGAGGAAGCAGCCGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CGGATGCAGCAGTATGACAGGATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCCCACACTGCTCTTCATaGTGTCCGCTTCCTCCCAGT +
Preference number: 4 (lower is better)
Translates to: RMQQYDRMGCSLGPPACGPHCSS*CPLPPS
Trigger: ACTGGGAGGAAGCGGACAGCATGAAGAGCAGTGTGG...GCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATACTGCTGCATCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCCTCAACATCTGGTCATaGCGGCTCAGCTGGGACTCC +
Preference number: 4 (lower is better)
Translates to: QQQPGWESWQRLGHLPMILNIWS*RLSWDS
Trigger: GGAGTCCCAGCTGAGCCGGCATGACCAGATGTTGAG...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGACTTGGCTCTTGCAGTaGCTGCACGTGGCCTCGCGG +
Preference number: 4 (lower is better)
Translates to: LLSERASRMQQYDRMGCSTWLLQ*LHVASR
Trigger: CCGCGAGGCCACGTGCAGTCACTGCAAGAGCCAAGT...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp CTCCGGCTGCTTCCTCTGTCCCACAAGGTCCTTTCTGAGGGCGAGGACCTCCGTCGGCGAGAGGACCCCTaGTCCATCAGCATAAGTGTC +
Preference number: 4 (lower is better)
Translates to: LRLLPLSHKVLSEGEDLRRREDP*SISISV
Trigger: GACACTTATGCTGATGGATCAGGGGTCCTCTCGCCG...ACGGAGGTCCTCGCCCTCAGAAAGGACCTTGTGGGACAGAGGAAGCAGCCGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTTGGCCACACTCCGTCTaGTTCGGGTTGCACAGCACC +
Preference number: 4 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSWPHSV*FGLHST
Trigger: GGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCA...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGTTCAGCAGGTTCACGTaGTGTACCGCGGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: PAPHLPGDALHTLRQGTEFSRFT*CTAELA
Trigger: GGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGAA...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCTGTGCATTTTGGACTaGAGGAGCTCAGCAGGGCGG +
Preference number: 4 (lower is better)
Translates to: PIPLTRGLHVWPPLALSILCILD*RSSAGR
Trigger: CCGCCCTGCTGAGCTCCTCCAGTCCAAAATGCACAG...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCTCAGTCACTCGGTTCTaGAGGGACTCCACACTGCTC +
Preference number: 4 (lower is better)
Translates to: QQQPGWESWQRLGHLPMISVTRF*RDSTLL
Trigger: GAGCAGTGTGGAGTCCCTCCAGAACCGAGTGACTGA...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGTCATGCCGGCTCAGCTaGGACTCCAGCAAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: PAPHLPGDALHTLRQGTESCRLS*DSSKPV
Trigger: CACAGGCTTGCTGGAGTCCCAGCTGAGCCGGCATGA...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGATCATGCCGGCTCAGCTaGGACTCCAGCAAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGSCRLS*DSSKPV
Trigger: CACAGGCTTGCTGGAGTCCCAGCTGAGCCGGCATGA...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCTTCTCTAGAACAGTTTaGGCGACAAAGACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPFSRTV*ATKTGQ
Trigger: CTGCCCAGTCTTTGTCGCCCAAACTGTTCTAGAGAA...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp AGCGCAGGCCCAGCTGGCCAATTGTGGGCGCGCCTTTaGGGCAAGTGGCACAGATGTGGTGGTTTGCACACA +
Preference number: 4 (lower is better)
Translates to: SAGPAGQLWARL*GKWHRCGGLHT
Trigger: TGTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGGCCAGCTGGGCCTGCGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp CGTGGTGCGGTTAGGGAATTGGATCATACCCGCTGCTaGGGTGCTGGGGCATGCTCAGCTGTAGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: RGAVRELDHTRC*GAGACSAVGLA
Trigger: AGCCAGCCCTACAGCTGAGCATGCCCCAGCACCCAAGCAGCGGGTATGATCCAATTCCCTAACCGCACCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATCCGTCTGCTTCGGGTTaGACAGCACCAGGCGGCACT +
Preference number: 4 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDPSASG*TAPGGT
Trigger: AGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGG...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATTCAGCAGGGCGGCCATaGAGCTCTCGCAGAACCGGT +
Preference number: 4 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDSAGRP*SSRRTG
Trigger: ACCGGTTCTGCGAGAGCTGCATGGCCGCCCTGCTGA...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCGGCTCTTGCAGTGACTaGACGTGGCCTCGCGGTATT +
Preference number: 4 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRGSCSD*TWPRGI
Trigger: AATACCGCGAGGCCACGTGCAGTCACTGCAAGAGCC...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCGGCTCTTGCAGTGACTaGACGTGGCCTCGCGGTATT +
Preference number: 4 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGGSCSD*TWPRGI
Trigger: AATACCGCGAGGCCACGTGCAGTCACTGCAAGAGCC...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTCTGCAGATCTGGTTGTaGAGGCTTTGGATGCTCTTG +
Preference number: 4 (lower is better)
Translates to: TGWASAGCPPHREARVAALQIWL*RLWMLL
Trigger: CAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAG...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CGGATGCAGCAGTATGACAGGATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCCGGAGCATCTCCTTCTaGCTCTCAATCTCGATCTCA +
Preference number: 4 (lower is better)
Translates to: RMQQYDRMGCSLGPPACGRSISF*LSISIS
Trigger: TGAGATCGAGATTGAGAGGCAGAAGGAGATGCTCCG...GCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATACTGCTGCATCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTCGGAGCATCTCCTTCTaGCTCTCAATCTCGATCTCA +
Preference number: 4 (lower is better)
Translates to: TGWASAGCPPHREARVAARSISF*LSISIS
Trigger: TGAGATCGAGATTGAGAGGCAGAAGGAGATGCTCCG...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTTCATGGGCCTTGATCTaGTGGTTTGTACCCTCACTC +
Preference number: 4 (lower is better)
Translates to: TGWASAGCPPHREARVAASWALI*WFVPSL
Trigger: GAGTGAGGGTACAAACCAGCAGATCAAGGCCCATGA...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCCTCTCGCAGAACCGGTaGCCACACTCCGTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: PTLSPVGGNALARYKSPCLSQNR*PHSVCF
Trigger: GAAGCAGACGGAGTGTGGCCACCGGTTCTGCGAGAG...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTCTGTGCATTTTGGACTaGAGGAGCTCAGCAGGGCGG +
Preference number: 4 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSLCILD*RSSAGR
Trigger: CCGCCCTGCTGAGCTCCTCCAGTCCAAAATGCACAG...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CTCCGGCTGCTTCCTCTGTCCCACAAGGTCCTTTCTGAGGGCGAGGACCTCCGTGCACGCTGTGCATTTTaGACTGGAGGAGCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: LRLLPLSHKVLSEGEDLRARCAF*TGGAQQ
Trigger: CTGCTGAGCTCCTCCAGTCCAAAATGCACAGCGTGC...ACGGAGGTCCTCGCCCTCAGAAAGGACCTTGTGGGACAGAGGAAGCAGCCGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CTCCGGCTGCTTCCTCTGTCCCACAAGGTCCTTTCTGAGGGCGAGGACCTCCGTTCAGTCACTCGGTTCTaGAGGGACTCCACACTGCTC +
Preference number: 4 (lower is better)
Translates to: LRLLPLSHKVLSEGEDLRSVTRF*RDSTLL
Trigger: GAGCAGTGTGGAGTCCCTCCAGAACCGAGTGACTGA...ACGGAGGTCCTCGCCCTCAGAAAGGACCTTGTGGGACAGAGGAAGCAGCCGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACGCGGTCTCGAGGACCTaGAACCGCAGGTCCATGTCG +
Preference number: 4 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHAVSRT*NRRSMS
Trigger: CGACATGGACCTGCGGTTCCAGGTCCTCGAGACCGC...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp GACCCCGTTACTTGGCGTGCCCAGACATCCTCATCTTaGCTGGATGCTGTCCACTGGTTGCCAGGTCTGCCG +
Preference number: 4 (lower is better)
Translates to: DPVTWRAQTSSS*LDAVHWLPGLP
Trigger: CGGCAGACCTGGCAACCAGTGGACAGCATCCAGCAAAGATGAGGATGTCTGGGCACGCCAAGTAACGGGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp TTGGGTGCTGGGGCATGCTCAGCTGTAGGGCTGGCTTaGGTGTGGGTCACTGCCTTGCCTGCCTACCTAGTA +
Preference number: 4 (lower is better)
Translates to: LGAGACSAVGLA*VWVTALPAYLV
Trigger: TACTAGGTAGGCAGGCAAGGCAGTGACCCACACCAAAGCCAGCCCTACAGCTGAGCATGCCCCAGCACCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGACTTGGCTCTTGCAGTaGCTGCACGTGGCCTCGCGG +
Preference number: 4 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLTWLLQ*LHVASR
Trigger: CCGCGAGGCCACGTGCAGTCACTGCAAGAGCCAAGT...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCGTGTCACTTTCTGCTTaGACGGCCATGGCAACAGAG +
Preference number: 4 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIVSLSA*TAMATE
Trigger: CTCTGTTGCCATGGCCGTTCAAGCAGAAAGTGACAC...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACAGGGGTGGGTTAGGCTaGAGTGTGCCAGCAGCATCC +
Preference number: 4 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHRGGLG*SVPAAS
Trigger: GGATGCTGCTGGCACACTGCAGCCTAACCCACCCCT...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACTGGCCACACTCCGTCTaGTTCGGGTTGCACAGCACC +
Preference number: 4 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYWPHSV*FGLHST
Trigger: GGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCA...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCTCAGCAGGGCGGCCATaGAGCTCTCGCAGAACCGGT +
Preference number: 4 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLSAGRP*SSRRTG
Trigger: ACCGGTTCTGCGAGAGCTGCATGGCCGCCCTGCTGA...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCTTTCTTGGCACGCTGTaGATTTTGGACTGGAGGAGC +
Preference number: 4 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIFLGTL*ILDWRS
Trigger: GCTCCTCCAGTCCAAAATGCACAGCGTGCCAAGAAA...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACTTCAGCAGGTTCACGTaGTGTACCGCGGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHFSRFT*CTAELA
Trigger: GGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGAA...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCTCAACACTTTCATTCTaGAGCAGGGAAACCTTCTTC +
Preference number: 4 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPSTLSF*SRETFF
Trigger: GAAGAAGGTTTCCCTGCTGCAGAATGAAAGTGTTGA...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGCCACACTGCTCTTCATaGTGTCCGCTTCCTCCCAGT +
Preference number: 4 (lower is better)
Translates to: PAPHLPGDALHTLRQGTEPHCSS*CPLPPS
Trigger: ACTGGGAGGAAGCGGACAGCATGAAGAGCAGTGTGG...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCCCACACTGCTCTTCATaGTGTCCGCTTCCTCCCAGT +
Preference number: 4 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRPHCSS*CPLPPS
Trigger: ACTGGGAGGAAGCGGACAGCATGAAGAGCAGTGTGG...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATCTCTCGCAGAACCGGTaGCCACACTCCGTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDLSQNR*PHSVCF
Trigger: GAAGCAGACGGAGTGTGGCCACCGGTTCTGCGAGAG...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCGCACGCTGTGCATTTTaGACTGGAGGAGCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGARCAF*TGGAQQ
Trigger: CTGCTGAGCTCCTCCAGTCCAAAATGCACAGCGTGC...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGATGCAGTGACTGCACGTaGCCTCGCGGTATTTACAGG +
Preference number: 4 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGCSDCT*PRGIYR
Trigger: CCTGTAAATACCGCGAGGCCACGTGCAGTCACTGCA...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTTGCAGTGACTGCACGTaGCCTCGCGGTATTTACAGG +
Preference number: 4 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSCSDCT*PRGIYR
Trigger: CCTGTAAATACCGCGAGGCCACGTGCAGTCACTGCA...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTTTGGGCGACAAAGACTaGGCAGCCAGAGGCGATATT +
Preference number: 4 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSLGDKD*AARGDI
Trigger: AATATCGCCTCTGGCTGCCCAGTCTTTGTCGCCCAA...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGAGTGTCACTTTCTGCTTaGACGGCCATGGCAACAGAG +
Preference number: 4 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGVSLSA*TAMATE
Trigger: CTCTGTTGCCATGGCCGTTCAAGCAGAAAGTGACAC...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGGTGTCACTTTCTGCTTaGACGGCCATGGCAACAGAG +
Preference number: 4 (lower is better)
Translates to: PAPHLPGDALHTLRQGTEVSLSA*TAMATE
Trigger: CTCTGTTGCCATGGCCGTTCAAGCAGAAAGTGACAC...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGAGGGGTGGGTTAGGCTaGAGTGTGCCAGCAGCATCC +
Preference number: 4 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLRGGLG*SVPAAS
Trigger: GGATGCTGCTGGCACACTGCAGCCTAACCCACCCCT...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCTTTCTTGGCACGCTGTaGATTTTGGACTGGAGGAGC +
Preference number: 4 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIFLGTL*ILDWRS
Trigger: GCTCCTCCAGTCCAAAATGCACAGCGTGCCAAGAAA...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CTCCGGCTGCTTCCTCTGTCCCACAAGGTCCTTTCTGAGGGCGAGGACCTCCGTGAAGAGTCTGAACGCTaGACTTGTGAGGGCAGGATA +
Preference number: 4 (lower is better)
Translates to: LRLLPLSHKVLSEGEDLREESER*TCEGRI
Trigger: TATCCTGCCCTCACAAGTGCAGCGTTCAGACTCTTC...ACGGAGGTCCTCGCCCTCAGAAAGGACCTTGTGGGACAGAGGAAGCAGCCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCTTCAGCAGGTTCACGTaGTGTACCGCGGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLFSRFT*CTAELA
Trigger: GGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGAA...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCTGCAGATCTGGTTGTaGAGGCTTTGGATGCTCTTG +
Preference number: 4 (lower is better)
Translates to: PIPLTRGLHVWPPLALSILQIWL*RLWMLL
Trigger: CAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAG...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACGCGGAGCTGGCCTCATaGGCCTTGATCTGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHAELAS*ALICWF
Trigger: AAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGC...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCTCAGTCACTCGGTTCTaGAGGGACTCCACACTGCTC +
Preference number: 4 (lower is better)
Translates to: PTLSPVGGNALARYKSPCSVTRF*RDSTLL
Trigger: GAGCAGTGTGGAGTCCCTCCAGAACCGAGTGACTGA...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTTGGGCCTTGATCTGCTaGTTTGTACCCTCACTCCTT +
Preference number: 4 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSWALIC*FVPSLL
Trigger: AAGGAGTGAGGGTACAAACCAGCAGATCAAGGCCCA...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGCGGCGAGAGGACCCCTaGTCCATCAGCATAAGTGTC +
Preference number: 4 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLRREDP*SISISV
Trigger: GACACTTATGCTGATGGATCAGGGGTCCTCTCGCCG...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCAGGGGTGGGTTAGGCTaGAGTGTGCCAGCAGCATCC +
Preference number: 4 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTRGGLG*SVPAAS
Trigger: GGATGCTGCTGGCACACTGCAGCCTAACCCACCCCT...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCTGCTCCACACCTCCCAGGAGATGCCCTTCACACACTGAGACAGGGCACAGAGGAAGAGTCTGAACGCTaGACTTGTGAGGGCAGGATA +
Preference number: 4 (lower is better)
Translates to: PAPHLPGDALHTLRQGTEEESER*TCEGRI
Trigger: TATCCTGCCCTCACAAGTGCAGCGTTCAGACTCTTC...CTCTGTGCCCTGTCTCAGTGTGTGAAGGGCATCTCCTGGGAGGTGTGGAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTTGTGCAGGCTTTGGATaGTCTTGTTTTTCTCAACAC +
Preference number: 4 (lower is better)
Translates to: TGWASAGCPPHREARVAACAGFG*SCFSQH
Trigger: GTGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACA...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACGCACGCTGTGCATTTTaGACTGGAGGAGCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYARCAF*TGGAQQ
Trigger: CTGCTGAGCTCCTCCAGTCCAAAATGCACAGCGTGC...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCGCGGAGCTGGCCTCATaGGCCTTGATCTGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLAELAS*ALICWF
Trigger: AAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGC...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CGGATGCAGCAGTATGACAGGATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCTGGTTGTGCAGGCTTTaGATGCTCTTGTTTTTCTCA +
Preference number: 4 (lower is better)
Translates to: RMQQYDRMGCSLGPPACGWLCRL*MLLFFS
Trigger: TGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCA...GCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATCCTGTCATACTGCTGCATCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCCATTCAGGTAGACCCTaGCACACATCTTATAGCCAA +
Preference number: 4 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIHSGRP*HTSYSQ
Trigger: TTGGCTATAAGATGTGTGCCAGGGTCTACCTGAATG...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCTGCTTGAACGGCCATaGCAACAGAGCATCATATTC +
Preference number: 4 (lower is better)
Translates to: PIPLTRGLHVWPPLALSILLERP*QQSIIF
Trigger: GAATATGATGCTCTGTTGCCATGGCCGTTCAAGCAG...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp GCACTTCTCCTTCATGCTGTGGGGATTTCAGGGCCCTaGCAGAGACCTGGAAGGGTGTGGCTTCTGCTCACA +
Preference number: 4 (lower is better)
Translates to: ALLLHAVGISGP*QRPGRVWLLLT
Trigger: TGTGAGCAGAAGCCACACCCTTCCAGGTCTCTGCAAGGGCCCTGAAATCCCCACAGCATGAAGGAGAAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp TCAGCTGTAGGGCTGGCTTTGGTGTGGGTCACTGCCTaGCCTGCCTACCTAGTAATGGTGCCCAAGCAGACA +
Preference number: 4 (lower is better)
Translates to: SAVGLALVWVTA*PAYLVMVPKQT
Trigger: TGTCTGCTTGGGCACCATTACTAGGTAGGCAGGCAAGGCAGTGACCCACACCAAAGCCAGCCCTACAGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCTCAGTACTTTTTCTTTaGAGTCGGCACGCAGACAGG +
Preference number: 4 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGSVLFL*SRHADR
Trigger: CCTGTCTGCGTGCCGACTGCAAAGAAAAAGTACTGA...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGATCAGTACTTTTTCTTTaGAGTCGGCACGCAGACAGG +
Preference number: 4 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGSVLFL*SRHADR
Trigger: CCTGTCTGCGTGCCGACTGCAAAGAAAAAGTACTGA...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGGAAGAGTCTGAACGCTaGACTTGTGAGGGCAGGATA +
Preference number: 4 (lower is better)
Translates to: LLSERASRMQQYDRMGCSEESER*TCEGRI
Trigger: TATCCTGCCCTCACAAGTGCAGCGTTCAGACTCTTC...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCTGTGCAGGCTTTGGATaGTCTTGTTTTTCTCAACAC +
Preference number: 4 (lower is better)
Translates to: QQQPGWESWQRLGHLPMICAGFG*SCFSQH
Trigger: GTGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACA...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCCTCAACATCTGGTCATaGCGGCTCAGCTGGGACTCC +
Preference number: 4 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTLNIWS*RLSWDS
Trigger: GGAGTCCCAGCTGAGCCGGCATGACCAGATGTTGAG...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCTTGATGATGCTTTCTTaGCACGCTGTGCATTTTGGA +
Preference number: 4 (lower is better)
Translates to: QQQPGWESWQRLGHLPMILMMLS*HAVHFG
Trigger: TCCAAAATGCACAGCGTGCCAAGAAAGCATCATCAA...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp ATAATGGAGAGAAGCGGGGAGCAGAGGACAAACCAAACGCTTCAGCCATGGAAGCGGCGAGAGGACCCCTaGTCCATCAGCATAAGTGTC +
Preference number: 4 (lower is better)
Translates to: IMERSGEQRTNQTLQPWKRREDP*SISISV
Trigger: GACACTTATGCTGATGGATCAGGGGTCCTCTCGCCG...CTTCCATGGCTGAAGCGTTTGGTTTGTCCTCTGCTCCCCGCTTCTCTCCATTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACTTTCTTGGCACGCTGTaGATTTTGGACTGGAGGAGC +
Preference number: 4 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHFLGTL*ILDWRS
Trigger: GCTCCTCCAGTCCAAAATGCACAGCGTGCCAAGAAA...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGTCAGTACTTTTTCTTTaGAGTCGGCACGCAGACAGG +
Preference number: 4 (lower is better)
Translates to: LLSERASRMQQYDRMGCSSVLFL*SRHADR
Trigger: CCTGTCTGCGTGCCGACTGCAAAGAAAAAGTACTGA...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTTCAACACTTTCATTCTaGAGCAGGGAAACCTTCTTC +
Preference number: 4 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSSTLSF*SRETFF
Trigger: GAAGAAGGTTTCCCTGCTGCAGAATGAAAGTGTTGA...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACCGGAGCATCTCCTTCTaGCTCTCAATCTCGATCTCA +
Preference number: 4 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHRSISF*LSISIS
Trigger: TGAGATCGAGATTGAGAGGCAGAAGGAGATGCTCCG...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCATAAGTGTCACTTTCTaGTTGAACGGCCATGGCAAC +
Preference number: 4 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRISVTF*LNGHGN
Trigger: GTTGCCATGGCCGTTCAAGCAGAAAGTGACACTTAT...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGACATTCAGGTAGACCCTaGCACACATCTTATAGCCAA +
Preference number: 4 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGHSGRP*HTSYSQ
Trigger: TTGGCTATAAGATGTGTGCCAGGGTCTACCTGAATG...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCCTGCTTGAACGGCCATaGCAACAGAGCATCATATTC +
Preference number: 4 (lower is better)
Translates to: PTLSPVGGNALARYKSPCLLERP*QQSIIF
Trigger: GAATATGATGCTCTGTTGCCATGGCCGTTCAAGCAG...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp GCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTaGCACACATTGGTTTTGCCTAAGAAGCACCTGTCG +
Preference number: 4 (lower is better)
Translates to: ARLLGKWHRCGG*HTLVLPKKHLS
Trigger: CGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp TTAGAACACGGGACGCTAATCACTGGTCACGATCACTaGGACTGTCAAGATGGGGCCTCACAGCGAGCGGTT +
Preference number: 4 (lower is better)
Translates to: LEHGTLITGHDH*DCQDGASQRAV
Trigger: AACCGCTCGCTGTGAGGCCCCATCTTGACAGTCCAAGTGATCGTGACCAGTGATTAGCGTCCCGTGTTCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGATCAACACTTTCATTCTaGAGCAGGGAAACCTTCTTC +
Preference number: 4 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGSTLSF*SRETFF
Trigger: GAAGAAGGTTTCCCTGCTGCAGAATGAAAGTGTTGA...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCTGTGCAGGCTTTGGATaGTCTTGTTTTTCTCAACAC +
Preference number: 4 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRCAGFG*SCFSQH
Trigger: GTGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACA...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCATAAGTGTCACTTTCTaGTTGAACGGCCATGGCAAC +
Preference number: 4 (lower is better)
Translates to: PTLSPVGGNALARYKSPCISVTF*LNGHGN
Trigger: GTTGCCATGGCCGTTCAAGCAGAAAGTGACACTTAT...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGATAAGTGTCACTTTCTaGTTGAACGGCCATGGCAAC +
Preference number: 4 (lower is better)
Translates to: LLSERASRMQQYDRMGCSISVTF*LNGHGN
Trigger: GTTGCCATGGCCGTTCAAGCAGAAAGTGACACTTAT...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GAGCACCAAGGAATGCTGAGATGGAGCAGAGCAAGGCACACCCAGGCAGGACGCTTGATGATGCTTTCTTaGCACGCTGTGCATTTTGGA +
Preference number: 4 (lower is better)
Translates to: EHQGMLRWSRARHTQAGRLMMLS*HAVHFG
Trigger: TCCAAAATGCACAGCGTGCCAAGAAAGCATCATCAA...GCGTCCTGCCTGGGTGTGCCTTGCTCTGCTCCATCTCAGCATTCCTTGGTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp ATAATGGAGAGAAGCGGGGAGCAGAGGACAAACCAAACGCTTCAGCCATGGAAGTGCAGTGACTGCACGTaGCCTCGCGGTATTTACAGG +
Preference number: 4 (lower is better)
Translates to: IMERSGEQRTNQTLQPWKCSDCT*PRGIYR
Trigger: CCTGTAAATACCGCGAGGCCACGTGCAGTCACTGCA...CTTCCATGGCTGAAGCGTTTGGTTTGTCCTCTGCTCCCCGCTTCTCTCCATTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGCATTCAGGTAGACCCTaGCACACATCTTATAGCCAA +
Preference number: 4 (lower is better)
Translates to: LLSERASRMQQYDRMGCSHSGRP*HTSYSQ
Trigger: TTGGCTATAAGATGTGTGCCAGGGTCTACCTGAATG...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAATTGTGGGCGCGCCTTTTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACCTGCTTGAACGGCCATaGCAACAGAGCATCATATTC +
Preference number: 4 (lower is better)
Translates to: PIVGAPFGQVAQMWWFAHLLERP*QQSIIF
Trigger: GAATATGATGCTCTGTTGCCATGGCCGTTCAAGCAG...GTGTGCAAACCACCACATCTGTGCCACTTGCCCAAAAGGCGCGCCCACAATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCTTGGGCGACAAAGACTaGGCAGCCAGAGGCGATATT +
Preference number: 4 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTLGDKD*AARGDI
Trigger: AATATCGCCTCTGGCTGCCCAGTCTTTGTCGCCCAA...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATTTCTCTAGAACAGTTTaGGCGACAAAGACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDFSRTV*ATKTGQ
Trigger: CTGCCCAGTCTTTGTCGCCCAAACTGTTCTAGAGAA...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp GGCCATGCAACTACCGGCCTCTTAAAAGATGAGCACTaGACACTTTTGCACAGCCAGGTACACACGCCGCAT +
Preference number: 4 (lower is better)
Translates to: GHATTGLLKDEH*TLLHSQVHTPH
Trigger: ATGCGGCGTGTGTACCTGGCTGTGCAAAAGTGTCAAGTGCTCATCTTTTAAGAGGCCGGTAGTTGCATGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGTTGATGATGCTTTCTTaGCACGCTGTGCATTTTGGA +
Preference number: 4 (lower is better)
Translates to: LLSERASRMQQYDRMGCSLMMLS*HAVHFG
Trigger: TCCAAAATGCACAGCGTGCCAAGAAAGCATCATCAA...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCTGGTTGTGCAGGCTTTaGATGCTCTTGTTTTTCTCA +
Preference number: 4 (lower is better)
Translates to: PTLSPVGGNALARYKSPCWLCRL*MLLFFS
Trigger: TGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCA...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATGCGGTCTCGAGGACCTaGAACCGCAGGTCCATGTCG +
Preference number: 4 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDAVSRT*NRRSMS
Trigger: CGACATGGACCTGCGGTTCCAGGTCCTCGAGACCGC...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCTGGGCCTTGATCTGCTaGTTTGTACCCTCACTCCTT +
Preference number: 4 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTWALIC*FVPSLL
Trigger: AAGGAGTGAGGGTACAAACCAGCAGATCAAGGCCCA...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR GCA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACATCATGGGCCTTGATCTaGTGGTTTGTACCCTCACTC +
Preference number: 4 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTSWALI*WFVPSL
Trigger: GAGTGAGGGTACAAACCAGCAGATCAAGGCCCATGA...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACTGGTTGTGCAGGCTTTaGATGCTCTTGTTTTTCTCA +
Preference number: 4 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYWLCRL*MLLFFS
Trigger: TGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCA...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATTCATGCCGGCTCAGCTaGGACTCCAGCAAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDSCRLS*DSSKPV
Trigger: CACAGGCTTGCTGGAGTCCCAGCTGAGCCGGCATGA...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp TTGGGCAAGTGGCACAGATGTGGTGGTTTGCACACATaGGTTTTGCCTAAGAAGCACCTGTCGCGTGTAGCA +
Preference number: 4 (lower is better)
Translates to: LGKWHRCGGLHT*VLPKKHLSRVA
Trigger: TGCTACACGCGACAGGTGCTTCTTAGGCAAAACCAATGTGTGCAAACCACCACATCTGTGCCACTTGCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp TGCAATAGACACAACACACTACAGGAAGCTGTGACATaGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTT +
Preference number: 4 (lower is better)
Translates to: CNRHNTLQEAVT*FRALIPGEQSL
Trigger: AAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCACAGCTTCCTGTAGTGTGTTGTGTCTATTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp CCTCACCTGATCAGACCCCCGTGGGCACATTTGAGCTaGGAGAAAACAGCTGCTATGGGTGTGCAAATAGAA +
Preference number: 4 (lower is better)
Translates to: PHLIRPPWAHLS*EKTAAMGVQIE
Trigger: TTCTATTTGCACACCCATAGCAGCTGTTTTCTCCAAGCTCAAATGTGCCCACGGGGGTCTGATCAGGTGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CCA 90 bp ATAATGGAGAGAAGCGGGGAGCAGAGGACAAACCAAACGCTTCAGCCATGGAAGTTCTCTAGAACAGTTTaGGCGACAAAGACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: IMERSGEQRTNQTLQPWKFSRTV*ATKTGQ
Trigger: CTGCCCAGTCTTTGTCGCCCAAACTGTTCTAGAGAA...CTTCCATGGCTGAAGCGTTTGGTTTGTCCTCTGCTCCCCGCTTCTCTCCATTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
3UTR CAA 72 bp GCACCTTTGAAAGAACTTGAGCTCTGCGGTCTTTCCTaGTGGGCAGAACCAAGGTTGCTGACTTACCCCAAA +
Preference number: 4 (lower is better)
Translates to: APLKELELCGLS*WAEPRLLTYPK
Trigger: TTTGGGGTAAGTCAGCAACCTTGGTTCTGCCCACAAGGAAAGACCGCAGAGCTCAAGTTCTTTCAAAGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR TCA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATTGGCCTCATGGGCCTTaGTCTGCTGGTTTGTACCCT +
Preference number: 4 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDWPHGP*SAGLYP
Trigger: AGGGTACAAACCAGCAGATCAAGGCCCATGAGGCCA...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCCTGGCCTCATGGGCCTaGATCTGCTGGTTTGTACCC +
Preference number: 5 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPLASWA*ICWFVP
Trigger: GGGTACAAACCAGCAGATCAAGGCCCATGAGGCCAG...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 90 bp AGGGCGGCCATGCAGCTCTCGCAGAACCGGTGGCCACACTCCGTCTaGTTCGGGTTGCACAGCACCAGGCGGCACTTCTCGCACTTGTAC +
Preference number: 5 (lower is better)
Translates to: RAAMQLSQNRWPHSV*FGLHSTRRHFSHLY
Trigger: GTACAAGTGCGAGAAGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCACCGGTTCTGCGAGAGCTGCATGGCCGCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS-3UTR CAA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCTCCGTCTGCTTCGGGTaGCACAGCACCAGGCGGCAC +
Preference number: 5 (lower is better)
Translates to: PIPLTRGLHVWPPLALSISVCFG*HSTRRH
Trigger: GTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGA...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTTCCGTCTGCTTCGGGTaGCACAGCACCAGGCGGCAC +
Preference number: 5 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSSVCFG*HSTRRH
Trigger: GTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGA...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 90 bp GGCGCTTGTAGTCACGGATCTTCCAGATCAGCACCCCGTTGTAGCTaGCGGTCTCGAGGACCTGGAACCGCAGGTCCATGTCGGCCAAGC +
Preference number: 5 (lower is better)
Translates to: GACSHGSSRSAPRCS*RSRGPGTAGPCRPS
Trigger: GCTTGGCCGACATGGACCTGCGGTTCCAGGTCCTCGAGACCGCCAGCTACAACGGGGTGCTGATCTGGAAGATCCGTGACTACAAGCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CTCCGGCTGCTTCCTCTGTCCCACAAGGTCCTTTCTGAGGGCGAGGACCTCCGTCTGGCCTCATGGGCCTaGATCTGCTGGTTTGTACCC +
Preference number: 5 (lower is better)
Translates to: LRLLPLSHKVLSEGEDLRLASWA*ICWFVP
Trigger: GGGTACAAACCAGCAGATCAAGGCCCATGAGGCCAG...ACGGAGGTCCTCGCCCTCAGAAAGGACCTTGTGGGACAGAGGAAGCAGCCGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GATGGGATGCTCGCTGGGGCCTCCTGCCTGCGGCACGGGTCACCTGCCTATCCCCTGGTTGTGCAGGCTTaGGATGCTCTTGTTTTTCTC +
Preference number: 5 (lower is better)
Translates to: DGMLAGASCLRHGSPAYPLVVQA*DALVFL
Trigger: GAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAG...GGGATAGGCAGGTGACCCGTGCCGCAGGCAGGAGGCCCCAGCGAGCATCCCATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGAGCCTGCCCCGCACTTTaGTCTACGCTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGACPAL*STLSSS
Trigger: TGAGCTGGAGAGCGTAGACAAAAGTGCGGGGCAGGC...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCGCCTGCCCCGCACTTTaGTCTACGCTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGACPAL*STLSSS
Trigger: TGAGCTGGAGAGCGTAGACAAAAGTGCGGGGCAGGC...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CTCCGGCTGCTTCCTCTGTCCCACAAGGTCCTTTCTGAGGGCGAGGACCTCCGTTCTCCGGTGGGTTTCTaGAAGCTGCTGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: LRLLPLSHKVLSEGEDLRSPVGF*KLLLLG
Trigger: CCCCAACAGCAGCAGCTTCAAGAAACCCACCGGAGA...ACGGAGGTCCTCGCCCTCAGAAAGGACCTTGTGGGACAGAGGAAGCAGCCGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 90 bp TCGAGGACCTGGAACCGCAGGTCCATGTCGGCCAAGCGGATGTCATaGACACTCAACATCTGGTCATGCCGGCTCAGCTGGGACTCCAGC +
Preference number: 5 (lower is better)
Translates to: SRTWNRRSMSAKRMS*TLNIWSCRLSWDSS
Trigger: GCTGGAGTCCCAGCTGAGCCGGCATGACCAGATGTTGAGTGTTCATGACATCCGCTTGGCCGACATGGACCTGCGGTTCCAGGTCCTCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 90 bp TGCAGCTCTCGCAGAACCGGTGGCCACACTCCGTCTGCTTCGGGTTaGACAGCACCAGGCGGCACTTCTCGCACTTGTACTTGTCTTCCA +
Preference number: 5 (lower is better)
Translates to: CSSRRTGGHTPSASG*TAPGGTSRTCTCLP
Trigger: TGGAAGACAAGTACAAGTGCGAGAAGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCACCGGTTCTGCGAGAGCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS GCA 90 bp CCAGCTCAGTCACTCGGTTCTGGAGGGACTCCACACTGCTCTTCATaGTGTCCGCTTCCTCCCAGTTCTGCCGGAAGGGACGGATCTCCT +
Preference number: 5 (lower is better)
Translates to: PAQSLGSGGTPHCSS*CPLPPSSAGRDGSP
Trigger: AGGAGATCCGTCCCTTCCGGCAGAACTGGGAGGAAGCGGACAGCATGAAGAGCAGTGTGGAGTCCCTCCAGAACCGAGTGACTGAGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp ACAGGCTGGGCATCAGCTGGCTGCCCTCCTCACAGGGAGGCCAGGGTTGCTGCTTTTGATCATGGGCACTaGGCTCTTGCAGTGACTGCA +
Preference number: 5 (lower is better)
Translates to: TGWASAGCPPHREARVAAFDHGH*ALAVTA
Trigger: TGCAGTCACTGCAAGAGCCAAGTGCCCATGATCAAA...AGCAGCAACCCTGGCCTCCCTGTGAGGAGGGCAGCCAGCTGATGCCCAGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGATCTCCGGTGGGTTTCTaGAAGCTGCTGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGSPVGF*KLLLLG
Trigger: CCCCAACAGCAGCAGCTTCAAGAAACCCACCGGAGA...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 90 bp TGCCCCGCACTTTTGTCTACGCTCTCCAGCTCAGTCACTCGGTTCTaGAGGGACTCCACACTGCTCTTCATGCTGTCCGCTTCCTCCCAG +
Preference number: 5 (lower is better)
Translates to: CPALLSTLSSSVTRF*RDSTLLFMLSASSQ
Trigger: CTGGGAGGAAGCGGACAGCATGAAGAGCAGTGTGGAGTCCCTCCAGAACCGAGTGACTGAGCTGGAGAGCGTAGACAAAAGTGCGGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACACCTCCGTCTGCTTCGGGTaGCACAGCACCAGGCGGCAC +
Preference number: 5 (lower is better)
Translates to: DIVQGPHPRGAVTYFTHTSVCFG*HSTRRH
Trigger: GTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGA...GGTGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCTTTGATCATGGGCACTaGGCTCTTGCAGTGACTGCA +
Preference number: 5 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIFDHGH*ALAVTA
Trigger: TGCAGTCACTGCAAGAGCCAAGTGCCCATGATCAAA...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 90 bp ACCTTCTTCTCCAGGGAGTTGCTCCACTCCTTCAGCAGGTTCACGTaGTGTACCGCGGAGCTGGCCTCATGGGCCTTGATCTGCTGGTTT +
Preference number: 5 (lower is better)
Translates to: TFFSRELLHSFSRFT*CTAELASWALICWF
Trigger: AAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGAAGGAGTGGAGCAACTCCCTGGAGAAGAAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATCTGGCCTCATGGGCCTaGATCTGCTGGTTTGTACCC +
Preference number: 5 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDLASWA*ICWFVP
Trigger: GGGTACAAACCAGCAGATCAAGGCCCATGAGGCCAG...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATTCTCCGGTGGGTTTCTaGAAGCTGCTGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDSPVGF*KLLLLG
Trigger: CCCCAACAGCAGCAGCTTCAAGAAACCCACCGGAGA...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 90 bp TCAGCAGGTTCACGTGCTGTACCGCGGAGCTGGCCTCATGGGCCTTaGTCTGCTGGTTTGTACCCTCACTCCTTAGAAGAGTCTGAACGC +
Preference number: 5 (lower is better)
Translates to: SAGSRAVPRSWPHGP*SAGLYPHSLEESER
Trigger: GCGTTCAGACTCTTCTAAGGAGTGAGGGTACAAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 90 bp GGTGCACCAGCAGATGTCCCAGAGTCAGCTGCTCCGCACAACCTCTaGCTTCATTCCGACAGTAGACCTGAAGGGCCAGAATCTCTCTCT +
Preference number: 5 (lower is better)
Translates to: GAPADVPESAAPHNL*LHSDSRPEGPESLS
Trigger: AGAGAGAGATTCTGGCCCTTCAGGTCTACTGTCGGAATGAAGGCAGAGGTTGTGCGGAGCAGCTGACTCTGGGACATCTGCTGGTGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 90 bp CACTCCTTCAGCAGGTTCACGTGCTGTACCGCGGAGCTGGCCTCATaGGCCTTGATCTGCTGGTTTGTACCCTCACTCCTTAGAAGAGTC +
Preference number: 5 (lower is better)
Translates to: HSFSRFTCCTAELAS*ALICWFVPSLLRRV
Trigger: GACTCTTCTAAGGAGTGAGGGTACAAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGAAGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTTTTCAGTTTCTCTGCTaGGCTGTCGATTACCCGCTG +
Preference number: 5 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSFQFLC*AVDYPL
Trigger: CAGCGGGTAATCGACAGCCAAGCAGAGAAACTGAAA...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp TTTACACACACCCTACAGGCACGGGGGAAGCCAGGAGGGCCACCTCGCATAGGATTTCAGTTTCTCTGCTaGGCTGTCGATTACCCGCTG +
Preference number: 5 (lower is better)
Translates to: FTHTLQARGKPGGPPRIGFQFLC*AVDYPL
Trigger: CAGCGGGTAATCGACAGCCAAGCAGAGAAACTGAAA...TCCTATGCGAGGTGGCCCTCCTGGCTTCCCCCGTGCCTGTAGGGTGTGTGTAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTTTTGATGATGCTTTCTaGGCACGCTGTGCATTTTGG +
Preference number: 5 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSFDDAF*ARCAFW
Trigger: CCAAAATGCACAGCGTGCCAAGAAAGCATCATCAAA...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CAGCAGCAGCCGGGGTGGGAGAGCTGGCAACGGCTGGGTCACTTGCCAATGATCGCCAGAATCTCTCTCTaGCAGCAATTATCCTTAAAC +
Preference number: 5 (lower is better)
Translates to: QQQPGWESWQRLGHLPMIARISL*QQLSLN
Trigger: GTTTAAGGATAATTGCTGCAAGAGAGAGATTCTGGC...GATCATTGGCAAGTGACCCAGCCGTTGCCAGCTCTCCCACCCCGGCTGCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CCAACCCTGTCACCTGTCGGGGGAAATGCCTTGGCCAGGTACAAAAGTCCCTGCAGTGTCACTTTCTGCTaGAACGGCCATGGCAACAGA +
Preference number: 5 (lower is better)
Translates to: PTLSPVGGNALARYKSPCSVTFC*NGHGNR
Trigger: TCTGTTGCCATGGCCGTTCAAGCAGAAAGTGACACT...GCAGGGACTTTTGTACCTGGCCAAGGCATTTCCCCCGACAGGTGACAGGGTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 90 bp AGGGACTCCACACTGCTCTTCATGCTGTCCGCTTCCTCCCAGTTCTaGCGGAAGGGACGGATCTCCTTGTCCAGTTCTTTCAGTTTCTCT +
Preference number: 5 (lower is better)
Translates to: RDSTLLFMLSASSQF*RKGRISLSSSFSFS
Trigger: AGAGAAACTGAAAGAACTGGACAAGGAGATCCGTCCCTTCCGGCAGAACTGGGAGGAAGCGGACAGCATGAAGAGCAGTGTGGAGTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCGCCAGAATCTCTCTCTaGCAGCAATTATCCTTAAAC +
Preference number: 5 (lower is better)
Translates to: PIPLTRGLHVWPPLALSIARISL*QQLSLN
Trigger: GTTTAAGGATAATTGCTGCAAGAGAGAGATTCTGGC...GATAGACAGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACTTTGATCATGGGCACTaGGCTCTTGCAGTGACTGCA +
Preference number: 5 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYFDHGH*ALAVTA
Trigger: TGCAGTCACTGCAAGAGCCAAGTGCCCATGATCAAA...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGCTGGTTGTGCAGGCTTaGGATGCTCTTGTTTTTCTC +
Preference number: 5 (lower is better)
Translates to: LLSERASRMQQYDRMGCSLVVQA*DALVFL
Trigger: GAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAG...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACTTTCAGTTTCTCTGCTaGGCTGTCGATTACCCGCTG +
Preference number: 5 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYFQFLC*AVDYPL
Trigger: CAGCGGGTAATCGACAGCCAAGCAGAGAAACTGAAA...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CCAGGCTACCTTCTTCTCCCTGACCAACGAAGGTGGAAGGCCCTGGGTTGTTACAGTGTCACTTTCTGCTaGAACGGCCATGGCAACAGA +
Preference number: 5 (lower is better)
Translates to: PGYLLLPDQRRWKALGCYSVTFC*NGHGNR
Trigger: TCTGTTGCCATGGCCGTTCAAGCAGAAAGTGACACT...GTAACAACCCAGGGCCTTCCACCTTCGTTGGTCAGGGAGAAGAAGGTAGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp AGTCTCACCCATCCCTCTCACACGCGGCCTACATGTGTGGCCTCCGCTGGCTCTAGGCTTTGGATGCTCTaGTTTTTCTCAACACTTTCA +
Preference number: 5 (lower is better)
Translates to: SLTHPSHTRPTCVASAGSRLWML*FFSTLS
Trigger: TGAAAGTGTTGAGAAAAACAAGAGCATCCAAAGCCT...AGAGCCAGCGGAGGCCACACATGTAGGCCGCGTGTGAGAGGGATGGGTGAGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GGATGTTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATCTGGTTGTGCAGGCTTaGGATGCTCTTGTTTTTCTC +
Preference number: 5 (lower is better)
Translates to: GCCFRSALAGCSSMTGWDLVVQA*DALVFL
Trigger: GAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAG...ATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAACATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp AGTCAGAGCGCCCACAGATTCTTAGGGAATCCTTGGGAGGAAGGCCGGCTTTTGAGTGTCACTTTCTGCTaGAACGGCCATGGCAACAGA +
Preference number: 5 (lower is better)
Translates to: SQSAHRFLGNPWEEGRLLSVTFC*NGHGNR
Trigger: TCTGTTGCCATGGCCGTTCAAGCAGAAAGTGACACT...CAAAAGCCGGCCTTCCTCCCAAGGATTCCCTAAGAATCTGTGGGCGCTCTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 90 bp ATACCACCACACAGGGACAATCTGTGTCTTCATGTTTCTGCAGTTTaGTCATGGGCACTTGGCTCTTGCAGTGACTGCACGTGGCCTCGC +
Preference number: 5 (lower is better)
Translates to: IPPHRDNLCLHVSAV*SWALGSCSDCTWPR
Trigger: GCGAGGCCACGTGCAGTCACTGCAAGAGCCAAGTGCCCATGATCAAACTGCAGAAACATGAAGACACAGATTGTCCCTGTGTGGTGGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 90 bp CGGACAAGTGTGCACTCAACTCACTCCTTAGAAGAGTCTGAACGCTaGACTTGTGAGGGCAGGATACCACCACACAGGGACAATCTGTGT +
Preference number: 5 (lower is better)
Translates to: RTSVHSTHSLEESER*TCEGRIPPHRDNLC
Trigger: ACACAGATTGTCCCTGTGTGGTGGTATCCTGCCCTCACAAGTGCAGCGTTCAGACTCTTCTAAGGAGTGAGTTGAGTGCACACTTGTCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021706.11
CDS CCA 90 bp GTTTCTCTGCTTGGCTGTCGATTACCCGCTGCAGGTGAAGGATCTTaGACTCGTTGTTTCGGAGCATCTCCTTCTGCCTCTCAATCTCGA +
Preference number: 5 (lower is better)
Translates to: VSLLGCRLPAAGEGS*TRCFGASPSASQSR
Trigger: TCGAGATTGAGAGGCAGAAGGAGATGCTCCGAAACAACGAGTCCAAGATCCTTCACCTGCAGCGGGTAATCGACAGCCAAGCAGAGAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GCCTACATGTGTGGCCTCCGCTGGCTCTGTCTATCCCCAAGAGGTGAAGGAGGCTTAAACACCTTGTCTTaGATGATGCTTTCTTGGCAC +
Preference number: 5 (lower is better)
Translates to: AYMCGLRWLCLSPRGEGGLNTLS*MMLSWH
Trigger: GTGCCAAGAAAGCATCATCAAAGACAAGGTGTTTAA...GCCTCCTTCACCTCTTGGGGATAGACAGAGCCAGCGGAGGCCACACATGTAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp TTGCTTTCGGAGCGCGCTAGCCGGATGCAGCAGTATGACAGGATGGGATGCTCGGCCAGAATCTCTCTCTaGCAGCAATTATCCTTAAAC +
Preference number: 5 (lower is better)
Translates to: LLSERASRMQQYDRMGCSARISL*QQLSLN
Trigger: GTTTAAGGATAATTGCTGCAAGAGAGAGATTCTGGC...CGAGCATCCCATCCTGTCATACTGCTGCATCCGGCTAGCGCGCTCCGAAAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GGATGCGGACCCTCTCACAGCCCTTTGCTTCCTGGAATGCTGGGCATGGGCTCTAGGCTTTGGATGCTCTaGTTTTTCTCAACACTTTCA +
Preference number: 5 (lower is better)
Translates to: GCGPSHSPLLPGMLGMGSRLWML*FFSTLS
Trigger: TGAAAGTGTTGAGAAAAACAAGAGCATCCAAAGCCT...AGAGCCCATGCCCAGCATTCCAGGAAGCAAAGGGCTGTGAGAGGGTCCGCATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 90 bp AGTTCTTTCAGTTTCTCTGCTTGGCTGTCGATTACCCGCTGCAGGTaGAGGATCTTGGACTCGTTGTTTCGGAGCATCTCCTTCTGCCTC +
Preference number: 5 (lower is better)
Translates to: SSFSFSAWLSITRCR*RILDSLFRSISFCL
Trigger: GAGGCAGAAGGAGATGCTCCGAAACAACGAGTCCAAGATCCTTCACCTGCAGCGGGTAATCGACAGCCAAGCAGAGAAACTGAAAGAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp CCCTCATACAAGGGTCTGAAACTAAGGACAGACATGCTTTTTGTCAGACACGATGCCTGCCCCGCACTTTaGTCTACGCTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: PSYKGLKLRTDMLFVRHDACPAL*STLSSS
Trigger: TGAGCTGGAGAGCGTAGACAAAAGTGCGGGGCAGGC...ATCGTGTCTGACAAAAAGCATGTCTGTCCTTAGTTTCAGACCCTTGTATGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACATTTGATGATGCTTTCTaGGCACGCTGTGCATTTTGG +
Preference number: 5 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTFDDAF*ARCAFW
Trigger: CCAAAATGCACAGCGTGCCAAGAAAGCATCATCAAA...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GGGAAAAGAGCAGAGAAAGAAAGGAGGCGGACGGTGGCTGTAAGCAGACACCTCAGGCTTTGGATGCTCTaGTTTTTCTCAACACTTTCA +
Preference number: 5 (lower is better)
Translates to: GKRAEKERRRTVAVSRHLRLWML*FFSTLS
Trigger: TGAAAGTGTTGAGAAAAACAAGAGCATCCAAAGCCT...GAGGTGTCTGCTTACAGCCACCGTCCGCCTCCTTTCTTTCTCTGCTCTTTTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 90 bp TGTTTCGGAGCATCTCCTTCTGCCTCTCAATCTCGATCTCAAAGCTaGAGATCTGGTTGTGCAGGCTTTGGATGCTCTTGTTTTTCTCAA +
Preference number: 5 (lower is better)
Translates to: CFGASPSASQSRSQS*RSGCAGFGCSCFSQ
Trigger: TTGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAGCTTTGAGATCGAGATTGAGAGGCAGAAGGAGATGCTCCGAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS-3UTR CAA 90 bp GTGACATTGTTCAGGGCCCTCATCCCAGGGGAGCAGTCACTTACTTTACACACATTAAACACCTTGTCTTaGATGATGCTTTCTTGGCAC +
Preference number: 5 (lower is better)
Translates to: VTLFRALIPGEQSLTLHTLNTLS*MMLSWH
Trigger: GTGCCAAGAAAGCATCATCAAAGACAAGGTGTTTAA...TGTGTGTAAAGTAAGTGACTGCTCCCCTGGGATGAGGGCCCTGAACAATGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 90 bp AGCATCTCCTTCTGCCTCTCAATCTCGATCTCAAAGCTGCAGATCTaGTTGTGCAGGCTTTGGATGCTCTTGTTTTTCTCAACACTTTCA +
Preference number: 5 (lower is better)
Translates to: SISFCLSISISKLQI*LCRLWMLLFFSTLS
Trigger: TGAAAGTGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAGCTTTGAGATCGAGATTGAGAGGCAGAAGGAGATGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 72 bp CTCAGCAGGGCGGCCATGCAGCTCTCGCAGAACCGGTaGCCACACTCCGTCTGCTTCGGGTTGCACAGCACC +
Preference number: 6 (lower is better)
Translates to: LSRAAMQLSQNR*PHSVCFGLHST
Trigger: GGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCACCGGTTCTGCGAGAGCTGCATGGCCGCCCTGCTGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS GCA 72 bp ATGCAGCTCTCGCAGAACCGGTGGCCACACTCCGTCTaGTTCGGGTTGCACAGCACCAGGCGGCACTTCTCG +
Preference number: 6 (lower is better)
Translates to: MQLSQNRWPHSV*FGLHSTRRHFS
Trigger: CGAGAAGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCACCGGTTCTGCGAGAGCTGCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS CAA 72 bp TCATGCCGGCTCAGCTGGGACTCCAGCAAGCCTGTGTaGCGAGCCGCCTGCCCCGCACTTTTGTCTACGCTC +
Preference number: 6 (lower is better)
Translates to: SCRLSWDSSKPV*RAACPALLSTL
Trigger: GAGCGTAGACAAAAGTGCGGGGCAGGCGGCTCGCAACACAGGCTTGCTGGAGTCCCAGCTGAGCCGGCATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CAA 90 bp TGGGACTCCAGCAAGCCTGTGTTGCGAGCCGCCTGCCCCGCACTTTaGTCTACGCTCTCCAGCTCAGTCACTCGGTTCTGGAGGGACTCC +
Preference number: 6 (lower is better)
Translates to: WDSSKPVLRAACPAL*STLSSSVTRFWRDS
Trigger: GGAGTCCCTCCAGAACCGAGTGACTGAGCTGGAGAGCGTAGACAAAAGTGCGGGGCAGGCGGCTCGCAACACAGGCTTGCTGGAGTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 72 bp CGCAGAACCGGTGGCCACACTCCGTCTGCTTCGGGTTaGACAGCACCAGGCGGCACTTCTCGCACTTGTACT +
Preference number: 6 (lower is better)
Translates to: RRTGGHTPSASG*TAPGGTSRTCT
Trigger: AGTACAAGTGCGAGAAGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCACCGGTTCTGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS GCA 72 bp TGCATTTTGGACTGGAGGAGCTCAGCAGGGCGGCCATaGAGCTCTCGCAGAACCGGTGGCCACACTCCGTCT +
Preference number: 6 (lower is better)
Translates to: CILDWRSSAGRP*SSRRTGGHTPS
Trigger: AGACGGAGTGTGGCCACCGGTTCTGCGAGAGCTGCATGGCCGCCCTGCTGAGCTCCTCCAGTCCAAAATGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS CAA 72 bp TCGCAGAACCGGTGGCCACACTCCGTCTGCTTCGGGTaGCACAGCACCAGGCGGCACTTCTCGCACTTGTAC +
Preference number: 6 (lower is better)
Translates to: SQNRWPHSVCFG*HSTRRHFSHLY
Trigger: GTACAAGTGCGAGAAGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCACCGGTTCTGCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS GCA 72 bp TCCAGGGAGTTGCTCCACTCCTTCAGCAGGTTCACGTaGTGTACCGCGGAGCTGGCCTCATGGGCCTTGATC +
Preference number: 6 (lower is better)
Translates to: SRELLHSFSRFT*CTAELASWALI
Trigger: GATCAAGGCCCATGAGGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGAAGGAGTGGAGCAACTCCCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CAA 72 bp TTCCACCGTCTTCACAAACTTCTCCTTGTAGCCTCCTaGCTCCGGCACGAGCACGGACCCTGCGCCGCGATC +
Preference number: 6 (lower is better)
Translates to: FHRLHKLLLVAS*LRHEHGPCAAI
Trigger: GATCGCGGCGCAGGGTCCGTGCTCGTGCCGGAGCAAGGAGGCTACAAGGAGAAGTTTGTGAAGACGGTGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS CAA 72 bp AGCAAGCCTGTGTTGCGAGCCGCCTGCCCCGCACTTTaGTCTACGCTCTCCAGCTCAGTCACTCGGTTCTGG +
Preference number: 6 (lower is better)
Translates to: SKPVLRAACPAL*STLSSSVTRFW
Trigger: CCAGAACCGAGTGACTGAGCTGGAGAGCGTAGACAAAAGTGCGGGGCAGGCGGCTCGCAACACAGGCTTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CAA 90 bp GTACTTGTCTTCCACCGTCTTCACAAACTTCTCCTTGTAGCCTCCTaGCTCCGGCACGAGCACGGACCCTGCGCCGCGATCAGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: VLVFHRLHKLLLVAS*LRHEHGPCAAIRLQ
Trigger: CTGCAGCCTGATCGCGGCGCAGGGTCCGTGCTCGTGCCGGAGCAAGGAGGCTACAAGGAGAAGTTTGTGAAGACGGTGGAAGACAAGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS CAA 90 bp ATGCAGCTCTCGCAGAACCGGTGGCCACACTCCGTCTGCTTCGGGTaGCACAGCACCAGGCGGCACTTCTCGCACTTGTACTTGTCTTCC +
Preference number: 6 (lower is better)
Translates to: MQLSQNRWPHSVCFG*HSTRRHFSHLYLSS
Trigger: GGAAGACAAGTACAAGTGCGAGAAGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGCCACCGGTTCTGCGAGAGCTGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS TCA 72 bp AGAAAGGCTGGCTGTAGAGAGACAGGGTCTTCCCCATaGCGGCCTCCTGCTTCCGGCGCTTGTAGTCACGGA +
Preference number: 6 (lower is better)
Translates to: RKAGCRETGSSP*RPPASGACSHG
Trigger: TCCGTGACTACAAGCGCCGGAAGCAGGAGGCCGTCATGGGGAAGACCCTGTCTCTCTACAGCCAGCCTTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 72 bp AGTCACGGATCTTCCAGATCAGCACCCCGTTGTAGCTaGCGGTCTCGAGGACCTGGAACCGCAGGTCCATGT +
Preference number: 6 (lower is better)
Translates to: SHGSSRSAPRCS*RSRGPGTAGPC
Trigger: ACATGGACCTGCGGTTCCAGGTCCTCGAGACCGCCAGCTACAACGGGGTGCTGATCTGGAAGATCCGTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 72 bp TGGAACCGCAGGTCCATGTCGGCCAAGCGGATGTCATaGACACTCAACATCTGGTCATGCCGGCTCAGCTGG +
Preference number: 6 (lower is better)
Translates to: WNRRSMSAKRMS*TLNIWSCRLSW
Trigger: CCAGCTGAGCCGGCATGACCAGATGTTGAGTGTTCATGACATCCGCTTGGCCGACATGGACCTGCGGTTCCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 72 bp AGCAGGTTCACGTGCTGTACCGCGGAGCTGGCCTCATaGGCCTTGATCTGCTGGTTTGTACCCTCACTCCTT +
Preference number: 6 (lower is better)
Translates to: SRFTCCTAELAS*ALICWFVPSLL
Trigger: AAGGAGTGAGGGTACAAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGCGGTACAGCACGTGAACCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 72 bp TCACGTGCTGTACCGCGGAGCTGGCCTCATGGGCCTTaGTCTGCTGGTTTGTACCCTGAAAAACGCAGCCAT +
Preference number: 6 (lower is better)
Translates to: SRAVPRSWPHGP*SAGLYPEKRSH
Trigger: ATGGCTGCGTTTTTCAGGGTACAAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGCGGTACAGCACGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021706.11
CDS GCA 72 bp CCGCGATCAGGCTGCAGCTTTAGGGGTGGGTTAGGCTaGAGTGTGCCAGCAGCATCCATCTTTTTGCTTGAC +
Preference number: 6 (lower is better)
Translates to: PRSGCSFRGGLG*SVPAASIFLLD
Trigger: GTCAAGCAAAAAGATGGATGCTGCTGGCACACTGCAGCCTAACCCACCCCTAAAGCTGCAGCCTGATCGCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS GCA 72 bp GCAGATGTCCCAGAGTCAGCTGCTCCGCACAACCTCTaGCTTCATTCCGACAGTAGACCTGAAGGGCCAGAA +
Preference number: 6 (lower is better)
Translates to: ADVPESAAPHNL*LHSDSRPEGPE
Trigger: TTCTGGCCCTTCAGGTCTACTGTCGGAATGAAGGCAGAGGTTGTGCGGAGCAGCTGACTCTGGGACATCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CAA 90 bp ATGCTGTCCGCTTCCTCCCAGTTCTGCCGGAAGGGACGGATCTCCTaGTCCAGTTCTTTCAGTTTCTCTGCTTGGCTGTCGATTACCCGC +
Preference number: 6 (lower is better)
Translates to: MLSASSQFCRKGRIS*SSSFSFSAWLSITR
Trigger: GCGGGTAATCGACAGCCAAGCAGAGAAACTGAAAGAACTGGACAAGGAGATCCGTCCCTTCCGGCAGAACTGGGAGGAAGCGGACAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 72 bp ACACTGCTCTTCATGCTGTCCGCTTCCTCCCAGTTCTaGCGGAAGGGACGGATCTCCTTGTCCAGTTCTTTC +
Preference number: 6 (lower is better)
Translates to: TLLFMLSASSQF*RKGRISLSSSF
Trigger: GAAAGAACTGGACAAGGAGATCCGTCCCTTCCGGCAGAACTGGGAGGAAGCGGACAGCATGAAGAGCAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 72 bp GTCTTTGATGATGCTTTCTTGGCACGCTGTGCATTTTaGACTGGAGGAGCTCAGCAGGGCGGCCATGCAGCT +
Preference number: 6 (lower is better)
Translates to: VFDDAFLARCAF*TGGAQQGGHAA
Trigger: AGCTGCATGGCCGCCCTGCTGAGCTCCTCCAGTCCAAAATGCACAGCGTGCCAAGAAAGCATCATCAAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS CCA 72 bp CTTTTGTCTACGCTCTCCAGCTCAGTCACTCGGTTCTaGAGGGACTCCACACTGCTCTTCATGCTGTCCGCT +
Preference number: 6 (lower is better)
Translates to: LLSTLSSSVTRF*RDSTLLFMLSA
Trigger: AGCGGACAGCATGAAGAGCAGTGTGGAGTCCCTCCAGAACCGAGTGACTGAGCTGGAGAGCGTAGACAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 72 bp GTGCACTCAACTCACTCCTTAGAAGAGTCTGAACGCTaGACTTGTGAGGGCAGGATACCACCACACAGGGAC +
Preference number: 6 (lower is better)
Translates to: VHSTHSLEESER*TCEGRIPPHRD
Trigger: GTCCCTGTGTGGTGGTATCCTGCCCTCACAAGTGCAGCGTTCAGACTCTTCTAAGGAGTGAGTTGAGTGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021706.11
CDS GCA 72 bp GGTTTGTACCCTCACTCCTTAGAAGAGTCTGAACGCTaGACTTGTGAGGGCAGGATACCACCACACAGGGAC +
Preference number: 6 (lower is better)
Translates to: GLYPHSLEESER*TCEGRIPPHRD
Trigger: GTCCCTGTGTGGTGGTATCCTGCCCTCACAAGTGCAGCGTTCAGACTCTTCTAAGGAGTGAGGGTACAAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CAA 72 bp TTCGGGTTGCACAGCACCAGGCGGCACTTCTCGCACTaGTACTTGTCTTCCACCGTCTTCACAAACTTCTCC +
Preference number: 6 (lower is better)
Translates to: FGLHSTRRHFSH*YLSSTVFTNFS
Trigger: GGAGAAGTTTGTGAAGACGGTGGAAGACAAGTACAAGTGCGAGAAGTGCCGCCTGGTGCTGTGCAACCCGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
ENSMUST00000139162.8
CDS CAA 90 bp CCGGAAGGGACGGATCTCCTTGTCCAGTTCTTTCAGTTTCTCTGCTaGGCTGTCGATTACCCGCTGCAGGTGAAGGATCTTGGACTCGTT +
Preference number: 6 (lower is better)
Translates to: PEGTDLLVQFFQFLC*AVDYPLQVKDLGLV
Trigger: AACGAGTCCAAGATCCTTCACCTGCAGCGGGTAATCGACAGCCAAGCAGAGAAACTGAAAGAACTGGACAAGGAGATCCGTCCCTTCCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 72 bp TTCTGCAGTTTGATCATGGGCACTTGGCTCTTGCAGTaGCTGCACGTGGCCTCGCGGTATTTACAGGCCTTT +
Preference number: 6 (lower is better)
Translates to: FCSLIMGTWLLQ*LHVASRYLQAF
Trigger: AAAGGCCTGTAAATACCGCGAGGCCACGTGCAGTCACTGCAAGAGCCAAGTGCCCATGATCAAACTGCAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 72 bp AGTTTCTCTGCTTGGCTGTCGATTACCCGCTGCAGGTaGAGGATCTTGGACTCGTTGTTTCGGAGCATCTCC +
Preference number: 6 (lower is better)
Translates to: SFSAWLSITRCR*RILDSLFRSIS
Trigger: GGAGATGCTCCGAAACAACGAGTCCAAGATCCTTCACCTGCAGCGGGTAATCGACAGCCAAGCAGAGAAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS TCA 72 bp CACAGGGACAATCTGTGTCTTCATGTTTCTGCAGTTTaGTCATGGGCACTTGGCTCTTGCAGTGACTGCACG +
Preference number: 6 (lower is better)
Translates to: HRDNLCLHVSAV*SWALGSCSDCT
Trigger: CGTGCAGTCACTGCAAGAGCCAAGTGCCCATGATCAAACTGCAGAAACATGAAGACACAGATTGTCCCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS GCA 72 bp AGGATCTTGGACTCGTTGTTTCGGAGCATCTCCTTCTaGCTCTCAATCTCGATCTCAAAGCTGCAGATCTGG +
Preference number: 6 (lower is better)
Translates to: RILDSLFRSISF*LSISISKLQIW
Trigger: CCAGATCTGCAGCTTTGAGATCGAGATTGAGAGGCAGAAGGAGATGCTCCGAAACAACGAGTCCAAGATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CAA 90 bp TCGATCTCAAAGCTGCAGATCTGGTTGTGCAGGCTTTGGATGCTCTaGTTTTTCTCAACACTTTCATTCTGCAGCAGGGAAACCTTCTTC +
Preference number: 6 (lower is better)
Translates to: SISKLQIWLCRLWML*FFSTLSFCSRETFF
Trigger: GAAGAAGGTTTCCCTGCTGCAGAATGAAAGTGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAGCTTTGAGATCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 72 bp TTATCCTTAAACACCTTGTCTTTGATGATGCTTTCTTaGCACGCTGTGCATTTTGGACTGGAGGAGCTCAGC +
Preference number: 6 (lower is better)
Translates to: LSLNTLSLMMLS*HAVHFGLEELS
Trigger: GCTGAGCTCCTCCAGTCCAAAATGCACAGCGTGCCAAGAAAGCATCATCAAAGACAAGGTGTTTAAGGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 72 bp TTCTGCCTCTCAATCTCGATCTCAAAGCTGCAGATCTaGTTGTGCAGGCTTTGGATGCTCTTGTTTTTCTCA +
Preference number: 6 (lower is better)
Translates to: FCLSISISKLQI*LCRLWMLLFFS
Trigger: TGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAGCTTTGAGATCGAGATTGAGAGGCAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CCA 72 bp CATCAGCATAAGTGTCACTTTCTGCTTGAACGGCCATaGCAACAGAGCATCATATTCTCCACGCATAATGAC +
Preference number: 6 (lower is better)
Translates to: HQHKCHFLLERP*QQSIIFSTHND
Trigger: GTCATTATGCGTGGAGAATATGATGCTCTGTTGCCATGGCCGTTCAAGCAGAAAGTGACACTTATGCTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CAA 72 bp TGCCTCTCAATCTCGATCTCAAAGCTGCAGATCTGGTaGTGCAGGCTTTGGATGCTCTTGTTTTTCTCAACA +
Preference number: 6 (lower is better)
Translates to: CLSISISKLQIW*CRLWMLLFFST
Trigger: TGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAGCTTTGAGATCGAGATTGAGAGGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8
CDS CAA 72 bp AGAATCTCTCTCTTGCAGCAATTATCCTTAAACACCTaGTCTTTGATGATGCTTTCTTGGCACGCTGTGCAT +
Preference number: 6 (lower is better)
Translates to: RISLLQQLSLNT*SLMMLSWHAVH
Trigger: ATGCACAGCGTGCCAAGAAAGCATCATCAAAGACAAGGTGTTTAAGGATAATTGCTGCAAGAGAGAGATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021706.11
ENSMUST00000060274.7
ENSMUST00000117269.8