Pregenerated sensors for TRADD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031887Ensembl transcript IDs: ENSMUST00000034359.10, ENSMUST00000144762.8
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGTGGTTTCTCCTCGGTCGGAGAGGAAACCGGGAACTTCGAACCTaGAGAAGCTACCTGTATGGCTCCACCCTGGCCAGTGCAGTCACA | + |
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Preference number: 1 (lower is better) Translates to: QWFLLGRRGNRELRT*RSYLYGSTLASAVT Trigger: TGTGACTGCACTGGCCAGGGTGGAGCCATACAGGTAGCTTCTGCAGGTTCGAAGTTCCCGGTTTCCTCTCCGACCGAGGAGAAACCACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| 3UTR GCA 90 bp | GCAGTTAGTTGCACTCCAGCAGCTCAGCTAGGTGGGGCGTGCGTATaGTCTCCAAGTCCAGTAGATGGAAAGTGGTCAGCAGTAGCAACA | + |
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Preference number: 1 (lower is better) Translates to: AVSCTPAAQLGGACV*SPSPVDGKWSAVAT Trigger: TGTTGCTACTGCTGACCACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCTGCTGGAGTGCAACTAACTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| 3UTR-3UTR GCA 90 bp | CCCCTTCCTCTCACCTTCCTCAAGGCCCTACCCGAACCCTGCCTGTCTCTCCACGGAGGGGCAGTTAGTTaGACTCCAGCAGCTCAGCTA | + |
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Preference number: 2 (lower is better) Translates to: PLPLTFLKALPEPCLSLHGGAVS*TPAAQL Trigger: TAGCTGAGCTGCTGGAGTGCAACTAACTGCCCCTCC...GTGGAGAGACAGGCAGGGTTCGGGTAGGGCCTTGAGGAAGGTGAGAGGAAGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| 3UTR-3UTR CCA 90 bp | AGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGCAAACACTGAACTGCTaGTTGGCCGCCCTTCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: SSARWGVRMLSKSSRWKVQTLNC*LAALPH Trigger: GTGGGGAAGGGCGGCCAACCAGCAGTTCAGTGTTTG...CACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| 3UTR-3UTR TCA 90 bp | CCCTTCCTCTCACCTTCCTCAAGGCCCTACCCGAACCCTGCCTGTCTCTCCACTAGTCCTCTTTTTGTATaGTCATCAGTGATTTACCCC | + |
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Preference number: 2 (lower is better) Translates to: PFLSPSSRPYPNPACLSTSPLFV*SSVIYP Trigger: GGGGTAAATCACTGATGATCATACAAAAAGAGGACT...AGTGGAGAGACAGGCAGGGTTCGGGTAGGGCCTTGAGGAAGGTGAGAGGAAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| 3UTR-3UTR CCA 90 bp | TCTTTTTGTATGATCATCAGTGATTTACCCCTGCGCTGCTTGCCTGGCTCCTGGCCCAACAGCCACCCGTaGGTTTCAAACACTGAACTG | + |
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Preference number: 2 (lower is better) Translates to: SFCMIISDLPLRCLPGSWPNSHP*VSNTEL Trigger: CAGTTCAGTGTTTGAAACCCACGGGTGGCTGTTGGG...CCAGGAGCCAGGCAAGCAGCGCAGGGGTAAATCACTGATGATCATACAAAAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| 3UTR CCA 72 bp | CGGTTCACTACGAGCTGCCCGTGGAACAGAAAAGTCTaGCAGGCGGCCGGCAGTGGTTTCTCCTCGGTCGGA | + |
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Preference number: 3 (lower is better) Translates to: RFTTSCPWNRKV*QAAGSGFSSVG Trigger: TCCGACCGAGGAGAAACCACTGCCGGCCGCCTGCCAGACTTTTCTGTTCCACGGGCAGCTCGTAGTGAACCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| 3UTR-3UTR CAA 90 bp | AGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGACACTGAACTGCTGGTaGGCCGCCCTTCCCCACAGT | + |
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Preference number: 3 (lower is better) Translates to: SSARWGVRMLSKSSRWKVTLNCW*AALPHS Trigger: ACTGTGGGGAAGGGCGGCCAACCAGCAGTTCAGTGT...CACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| 3UTR GCA 72 bp | TGCACTCCAGCAGCTCAGCTAGGTGGGGCGTGCGTATaGTCTCCAAGTCCAGTAGATGGAAAGTGGTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: CTPAAQLGGACV*SPSPVDGKWSA Trigger: TGCTGACCACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCTGCTGGAGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| 3UTR GCA 72 bp | GTTAGTTGCACTCCAGCAGCTCAGCTAGGTGGGGCGTaGGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGG | + |
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Preference number: 3 (lower is better) Translates to: VSCTPAAQLGGA*VCSPSPVDGKW Trigger: CCACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCTGCTGGAGTGCAACTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| 3UTR CCA 72 bp | CCGAACCCTGCCTGTCTCTCCACTCCCTACTCTACCTaGCTCACTATTCCACTGAAGGTGACTAACCCCAAC | + |
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Preference number: 3 (lower is better) Translates to: PNPACLSTPYST*LTIPLKVTNPN Trigger: GTTGGGGTTAGTCACCTTCAGTGGAATAGTGAGCCAGGTAGAGTAGGGAGTGGAGAGACAGGCAGGGTTCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | CCCTTCCTCTCACCTTCCTCAAGGCCCTACCCGAACCCTGCCTGTCTCTCCACTCAAGCGCCGGGGCCATaGACCTCTGCAGCGCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: PFLSPSSRPYPNPACLSTQAPGP*TSAARC Trigger: GCACCGCGCTGCAGAGGTGCATGGCCCCGGCGCTTG...AGTGGAGAGACAGGCAGGGTTCGGGTAGGGCCTTGAGGAAGGTGAGAGGAAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | AGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGGCCTCCACCAGGCGCTaGAGTGTGGCACGGCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: SSARWGVRMLSKSSRWKVASTRR*SVARRP Trigger: GGGCCGCCGTGCCACACTGCAGCGCCTGGTGGAGGC...CACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | GGCCGGTTCACTACGAGCTGCCCGTGGAACAGAAAAGTCTGGCAGGCGGCCGGCAAAACAGGTATGCACTaGCCACCCACTCCTCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: GRFTTSCPWNRKVWQAAGKTGMH*PPTPRG Trigger: GCCACGAGGAGTGGGTGGGCAGTGCATACCTGTTTT...GCCGGCCGCCTGCCAGACTTTTCTGTTCCACGGGCAGCTCGTAGTGAACCGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| CDS-3UTR GCA 90 bp | AGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGCGGCGGCCCTCGGCTTaGATGAAACGGCGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSARWGVRMLSKSSRWKVRRPSA*MKRRSS Trigger: GCTGCTGCGCCGTTTCATGCAAGCCGAGGGCCGCCG...CACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR TCA 90 bp | AGCAGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGGCCCTCGGCTTGCATaGAACGGCGCAGCAGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SSSARWGVRMLSKSSRWKGPRLA*NGAAAG Trigger: TCCAGCTGCTGCGCCGTTTCATGCAAGCCGAGGGCC...TTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR TCA 90 bp | TGCAGAAGCTACCTGTATGGCTCCACCCTGGCCAGTGCAGTCACACGTCAGTTTCTGAGCCGGTCGGGCTaGCAGTGCAGTCTGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: CRSYLYGSTLASAVTRQFLSRSG*QCSLQS Trigger: GCTCTGCAGACTGCACTGTCAGCCCGACCGGCTCAG...AAACTGACGTGTGACTGCACTGGCCAGGGTGGAGCCATACAGGTAGCTTCTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| CDS-3UTR GCA 90 bp | GCTGCCCGTGGAACAGAAAAGTCTGGCAGGCGGCCGGCAGTGGTTTCTCCTCGGCTCCAAAAACAGGTATaGACTGCCCACCCACTCCTC | + |
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Preference number: 4 (lower is better) Translates to: AARGTEKSGRRPAVVSPRLQKQV*TAHPLL Trigger: GAGGAGTGGGTGGGCAGTGCATACCTGTTTTTGGAG...CCGAGGAGAAACCACTGCCGGCCGCCTGCCAGACTTTTCTGTTCCACGGGCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| CDS-3UTR GCA 90 bp | TCTTTTTGTATGATCATCAGTGATTTACCCCTGCGCTGCTTGCCTGGCTCCTGGACCTCTGCAGCGCGGTaGGCAGCGCCCCCTCGCGGT | + |
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Preference number: 4 (lower is better) Translates to: SFCMIISDLPLRCLPGSWTSAAR*AAPPRG Trigger: ACCGCGAGGGGGCGCTGCGCACCGCGCTGCAGAGGT...CCAGGAGCCAGGCAAGCAGCGCAGGGGTAAATCACTGATGATCATACAAAAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | CCCTTCCTCTCACCTTCCTCAAGGCCCTACCCGAACCCTGCCTGTCTCTCCACTAGCAGCTGGAAGGCCTaGTCGTATAGCCCATCACGC | + |
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Preference number: 4 (lower is better) Translates to: PFLSPSSRPYPNPACLSTSSWKA*SYSPSR Trigger: GCGTGATGGGCTATACGAGCAGGCCTTCCAGCTGCT...AGTGGAGAGACAGGCAGGGTTCGGGTAGGGCCTTGAGGAAGGTGAGAGGAAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | CCGGTTCACTACGAGCTGCCCGTGGAACAGAAAAGTCTGGCAGGCGGCCGGCAGGCTGACAGTGCAGTCTaGAGAGCCTTGTATATTGCC | + |
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Preference number: 4 (lower is better) Translates to: PVHYELPVEQKSLAGGRQADSAV*RALYIA Trigger: GGCAATATACAAGGCTCTGCAGACTGCACTGTCAGC...CTGCCGGCCGCCTGCCAGACTTTTCTGTTCCACGGGCAGCTCGTAGTGAACCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| CDS-3UTR CCA 90 bp | GTATGCTCTCCAAGTCCAGTAGATGGAAAGTGGTCAGCAGTAGCAACATCAGCGCCAGGCGCTGCAGTGTaGCACGGCGGCCCTCGGCTT | + |
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Preference number: 4 (lower is better) Translates to: VCSPSPVDGKWSAVATSAPGAAV*HGGPRL Trigger: AAGCCGAGGGCCGCCGTGCCACACTGCAGCGCCTGG...CGCTGATGTTGCTACTGCTGACCACTTTCCATCTACTGGACTTGGAGAGCATAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR TCA 90 bp | AGCAGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGCTGTCCCCACTCTCTaGCAGTGCAGTCTGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: SSSARWGVRMLSKSSRWKAVPTL*QCSLQS Trigger: GCTCTGCAGACTGCACTGTCAGAGAGTGGGGACAGC...TTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | GGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGGTCAGCAGTAGCAACGCACGCAACTCCAGCTaGAACCGCAGCGCTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GVRMLSKSSRWKVVSSSNARNSS*NRSASW Trigger: CCAGGAAGCGCTGCGGTTGCAGCTGGAGTTGCGTGC...GTTGCTACTGCTGACCACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR CCA 90 bp | AGCAGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAACAGAAGCTACCTGTATaGCTCCACCCTGGCCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: SSSARWGVRMLSKSSRWKQKLPV*LHPGQC Trigger: GCACTGGCCAGGGTGGAGCCATACAGGTAGCTTCTG...TTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | AGCAGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAAAAACAGGTATGCACTaGCCACCCACTCCTCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SSSARWGVRMLSKSSRWKKTGMH*PPTPRG Trigger: GCCACGAGGAGTGGGTGGGCAGTGCATACCTGTTTT...TTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCTGCT 56% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | AGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGCTCCAAAAACAGGTATaGACTGCCCACCCACTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SSARWGVRMLSKSSRWKVLQKQV*TAHPLL Trigger: GAGGAGTGGGTGGGCAGTGCATACCTGTTTTTGGAG...CACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR CCA 90 bp | AGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGACTACGAGCTGCCCGTaGAACAGAAAAGTCTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SSARWGVRMLSKSSRWKVTTSCP*NRKVWQ Trigger: CTGCCAGACTTTTCTGTTCCACGGGCAGCTCGTAGT...CACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR TCA 90 bp | GGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGGTCAGCAGTAGCAACCGCTGCAGTGGATCTTaGGTATCTGCAGTACGTCAG | + |
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Preference number: 4 (lower is better) Translates to: GVRMLSKSSRWKVVSSSNRCSGS*VSAVRQ Trigger: CTGACGTACTGCAGATACTCAAGATCCACTGCAGCG...GTTGCTACTGCTGACCACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | TCTTTTTGTATGATCATCAGTGATTTACCCCTGCGCTGCTTGCCTGGCTCCTGGCTCCACCCTGGCCAGTaGAGTCACACGTCAGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SFCMIISDLPLRCLPGSWLHPGQ*SHTSVC Trigger: GCAAACTGACGTGTGACTGCACTGGCCAGGGTGGAG...CCAGGAGCCAGGCAAGCAGCGCAGGGGTAAATCACTGATGATCATACAAAAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR CCA 90 bp | TCTTTTTGTATGATCATCAGTGATTTACCCCTGCGCTGCTTGCCTGGCTCCTGGTGTATGGCTCCACCCTaGCCAGTGCAGTCACACGTC | + |
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Preference number: 4 (lower is better) Translates to: SFCMIISDLPLRCLPGSWCMAPP*PVQSHV Trigger: GACGTGTGACTGCACTGGCCAGGGTGGAGCCATACA...CCAGGAGCCAGGCAAGCAGCGCAGGGGTAAATCACTGATGATCATACAAAAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | TCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGGTCTCTGACAGTGCAGTCTaGAGAGCCTTGTATATTGCC | + |
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Preference number: 4 (lower is better) Translates to: SARWGVRMLSKSSRWKVVSDSAV*RALYIA Trigger: GGCAATATACAAGGCTCTGCAGACTGCACTGTCAGA...GACCACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | AGCAGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAATGGATCTTGAGTATCTaGAGTACGTCAGAGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: SSSARWGVRMLSKSSRWKWILSI*STSELS Trigger: GGACAGCTCTGACGTACTGCAGATACTCAAGATCCA...TTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR GCA 90 bp | GTATGCTCTCCAAGTCCAGTAGATGGAAAGTGGTCAGCAGTAGCAACATCAGCGCAGAGCCTTGTATATTaGCACCTTCTTCTTGGGATC | + |
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Preference number: 4 (lower is better) Translates to: VCSPSPVDGKWSAVATSAQSLVY*HLLLGI Trigger: GATCCCAAGAAGAAGGTGGCAATATACAAGGCTCTG...CGCTGATGTTGCTACTGCTGACCACTTTCCATCTACTGGACTTGGAGAGCATAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 90 bp | GCGCTTCCTGGGCAAGCGCCGGGGCCATGCACCTCTGCAGCGCGGTaGGCAGCGCCCCCTCGCGGTAGGCTTGGAGGAAGCGGCCGCACA | + |
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Preference number: 5 (lower is better) Translates to: ALPGQAPGPCTSAAR*AAPPRGRLGGSGRT Trigger: TGTGCGGCCGCTTCCTCCAAGCCTACCGCGAGGGGGCGCTGCGCACCGCGCTGCAGAGGTGCATGGCCCCGGCGCTTGCCCAGGAAGCGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CCA 90 bp | TGCTCCGCACCTGCACGCAACTCCAGCTGCAACCGCAGCGCTTCCTaGGCAAGCGCCGGGGCCATGCACCTCTGCAGCGCGGTGCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: CSAPARNSSCNRSAS*ASAGAMHLCSAVRS Trigger: GCTGCGCACCGCGCTGCAGAGGTGCATGGCCCCGGCGCTTGCCCAGGAAGCGCTGCGGTTGCAGCTGGAGTTGCGTGCAGGTGCGGAGCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 90 bp | AGCGCCTCCACCAGGCGCTGCAGTGTGGCACGGCGGCCCTCGGCTTaGATGAAACGGCGCAGCAGCTGGAAGGCCTGCTCGTATAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: SASTRRCSVARRPSA*MKRRSSWKACSYSP Trigger: TGGGCTATACGAGCAGGCCTTCCAGCTGCTGCGCCGTTTCATGCAAGCCGAGGGCCGCCGTGCCACACTGCAGCGCCTGGTGGAGGCGCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 90 bp | GCTAGACTAGTGAGTTCGTTCTCCTCCAGCGCCTCCACCAGGCGCTaGAGTGTGGCACGGCGGCCCTCGGCTTGCATGAAACGGCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ARLVSSFSSSASTRR*SVARRPSACMKRRS Trigger: GCTGCGCCGTTTCATGCAAGCCGAGGGCCGCCGTGCCACACTGCAGCGCCTGGTGGAGGCGCTGGAGGAGAACGAACTCACTAGTCTAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR CAA 90 bp | CCCTTCCTCTCACCTTCCTCAAGGCCCTACCCGAACCCTGCCTGTCTCTCCACTCCCCTCGCGGTAGGCTaGGAGGAAGCGGCCGCACAG | + |
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Preference number: 5 (lower is better) Translates to: PFLSPSSRPYPNPACLSTPLAVG*EEAAAQ Trigger: CTGTGCGGCCGCTTCCTCCAAGCCTACCGCGAGGGG...AGTGGAGAGACAGGCAGGGTTCGGGTAGGGCCTTGAGGAAGGTGAGAGGAAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 90 bp | ACGCTCATACTCGTAGGCCAGCGAGTCGAGGGCAGGATCTCTCAGTaGCCGACAGTTACGCTGCAGCGAGCGCCCCACCCTGCGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: TLILVGQRVEGRISQ*PTVTLQRAPHPAPL Trigger: AAGTGGCGCAGGGTGGGGCGCTCGCTGCAGCGTAACTGTCGGGCACTGAGAGATCCTGCCCTCGACTCGCTGGCCTACGAGTATGAGCGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 90 bp | ACAGCGCTCTTCATCAGTCAGCCAACTGTCCAGCTGCTCCGCACCTaGACGCAACTCCAGCTGCAACCGCAGCGCTTCCTGGGCAAGCGC | + |
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Preference number: 5 (lower is better) Translates to: TALFISQPTVQLLRT*TQLQLQPQRFLGKR Trigger: GCGCTTGCCCAGGAAGCGCTGCGGTTGCAGCTGGAGTTGCGTGCAGGTGCGGAGCAGCTGGACAGTTGGCTGACTGATGAAGAGCGCTGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS TCA 90 bp | CGGCCGCACAGCACGCGCCCGCAGAACCGCAACTGGACGATGAGCTaGGGGTCGCTGCAGTGGATCTTGAGTATCTGCAGTACGTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: RPHSTRPQNRNWTMS*GSLQWILSICSTSE Trigger: CTCTGACGTACTGCAGATACTCAAGATCCACTGCAGCGACCCTCAGCTCATCGTCCAGTTGCGGTTCTGCGGGCGCGTGCTGTGCGGCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR CAA 90 bp | AGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGCCCACCCTGCGCCACTaGAGACCCACCGAGCGCGCA | + |
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Preference number: 5 (lower is better) Translates to: SSARWGVRMLSKSSRWKVPTLRH*RPTERA Trigger: TGCGCGCTCGGTGGGTCTCAAGTGGCGCAGGGTGGG...CACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS TCA 90 bp | CTGCGCCACTTGAGACCCACCGAGCGCGCAAACGTCTGCTGGTCTTaGAGAGTCAGTGGCCGGTTCACTACGAGCTGCCCGTGGAACAGA | + |
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Preference number: 5 (lower is better) Translates to: LRHLRPTERANVCWS*RVSGRFTTSCPWNR Trigger: TCTGTTCCACGGGCAGCTCGTAGTGAACCGGCCACTGACTCTTCAAGACCAGCAGACGTTTGCGCGCTCGGTGGGTCTCAAGTGGCGCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CCA 90 bp | GAGACCCACCGAGCGCGCAAACGTCTGCTGGTCTTGAAGAGTCAGTaGCCGGTTCACTACGAGCTGCCCGTGGAACAGAAAAGTCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: ETHRARKRLLVLKSQ*PVHYELPVEQKSLA Trigger: TGCCAGACTTTTCTGTTCCACGGGCAGCTCGTAGTGAACCGGCCACTGACTCTTCAAGACCAGCAGACGTTTGCGCGCTCGGTGGGTCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR CAA 90 bp | TATCCTTCACTAACAGGACAGGTAGCAACCCCTTCCTCTCACCTTCCTCAAGGCACGGCGGCCCTCGGCTaGCATGAAACGGCGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: YPSLTGQVATPSSHLPQGTAALG*HETAQQ Trigger: CTGCTGCGCCGTTTCATGCAAGCCGAGGGCCGCCGT...GCCTTGAGGAAGGTGAGAGGAAGGGGTTGCTACCTGTCCTGTTAGTGAAGGATA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 90 bp | ACTTCGAACCTGCAGAAGCTACCTGTATGGCTCCACCCTGGCCAGTaGAGTCACACGTCAGTTTGCAGAGCTCATCCTCCAGCTCCGCGA | + |
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Preference number: 5 (lower is better) Translates to: TSNLQKLPVWLHPGQ*SHTSVCRAHPPAPR Trigger: TCGCGGAGCTGGAGGATGAGCTCTGCAAACTGACGTGTGACTGCACTGGCCAGGGTGGAGCCATACAGGTAGCTTCTGCAGGTTCGAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS-3UTR CAA 90 bp | CGGTTCACTACGAGCTGCCCGTGGAACAGAAAAGTCTGGCAGGCGGCCGGCAGTGCAGTCTGCAGAGCCTaGTATATTGCCACCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: RFTTSCPWNRKVWQAAGSAVCRA*YIATFF Trigger: GAAGAAGGTGGCAATATACAAGGCTCTGCAGACTGC...ACTGCCGGCCGCCTGCCAGACTTTTCTGTTCCACGGGCAGCTCGTAGTGAACCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| CDS GCA 90 bp | TTCAGACAGGATCACCTTGTCTACCGCAGACTCCAAAAACAGGTATaGACTGCCCACCCACTCCTCGTGGCCATTCTGACCGGCTGCCAT | + |
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Preference number: 5 (lower is better) Translates to: FRQDHLVYRRLQKQV*TAHPLLVAILTGCH Trigger: ATGGCAGCCGGTCAGAATGGCCACGAGGAGTGGGTGGGCAGTGCATACCTGTTTTTGGAGTCTGCGGTAGACAAGGTGATCCTGTCTGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034359.10 ENSMUST00000144762.8 |
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| CDS-3UTR CAA 90 bp | TTCACTACGAGCTGCCCGTGGAACAGAAAAGTCTGGCAGGCGGCCGGCAGTGGTGCAGAGCCTTGTATATaGCCACCTTCTTCTTGGGAT | + |
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Preference number: 5 (lower is better) Translates to: FTTSCPWNRKVWQAAGSGAEPCI*PPSSWD Trigger: ATCCCAAGAAGAAGGTGGCAATATACAAGGCTCTGC...ACCACTGCCGGCCGCCTGCCAGACTTTTCTGTTCCACGGGCAGCTCGTAGTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| CDS-3UTR CAA 90 bp | AGCTCAGCTAGGTGGGGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGGCAGTCTGCAGAGCCTaGTATATTGCCACCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SSARWGVRMLSKSSRWKVAVCRA*YIATFF Trigger: GAAGAAGGTGGCAATATACAAGGCTCTGCAGACTGC...CACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCCCCACCTAGCTGAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CCA 90 bp | CTGACAGTGCAGTCTGCAGAGCCTTGTATATTGCCACCTTCTTCTTaGGATCCGTGTAGGCTTCAGACAGGATCACCTTGTCTACCGCAG | + |
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Preference number: 5 (lower is better) Translates to: LTVQSAEPCILPPSS*DPCRLQTGSPCLPQ Trigger: CTGCGGTAGACAAGGTGATCCTGTCTGAAGCCTACACGGATCCCAAGAAGAAGGTGGCAATATACAAGGCTCTGCAGACTGCACTGTCAG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034359.10 ENSMUST00000144762.8 |
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| CDS-3UTR CAA 90 bp | GGCGTGCGTATGCTCTCCAAGTCCAGTAGATGGAAAGTGGTCAGCAGTAGCAACGCAGAGCCTTGTATATaGCCACCTTCTTCTTGGGAT | + |
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Preference number: 5 (lower is better) Translates to: GVRMLSKSSRWKVVSSSNAEPCI*PPSSWD Trigger: ATCCCAAGAAGAAGGTGGCAATATACAAGGCTCTGC...GTTGCTACTGCTGACCACTTTCCATCTACTGGACTTGGAGAGCATACGCACGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CCA 72 bp | CCTGCACGCAACTCCAGCTGCAACCGCAGCGCTTCCTaGGCAAGCGCCGGGGCCATGCACCTCTGCAGCGCG | + |
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Preference number: 6 (lower is better) Translates to: PARNSSCNRSAS*ASAGAMHLCSA Trigger: CGCGCTGCAGAGGTGCATGGCCCCGGCGCTTGCCCAGGAAGCGCTGCGGTTGCAGCTGGAGTTGCGTGCAGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 72 bp | ACCAGGCGCTGCAGTGTGGCACGGCGGCCCTCGGCTTaGATGAAACGGCGCAGCAGCTGGAAGGCCTGCTCG | + |
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Preference number: 6 (lower is better) Translates to: TRRCSVARRPSA*MKRRSSWKACS Trigger: CGAGCAGGCCTTCCAGCTGCTGCGCCGTTTCATGCAAGCCGAGGGCCGCCGTGCCACACTGCAGCGCCTGGT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CAA 72 bp | CACCAGGCGCTGCAGTGTGGCACGGCGGCCCTCGGCTaGCATGAAACGGCGCAGCAGCTGGAAGGCCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: HQALQCGTAALG*HETAQQLEGLL Trigger: GAGCAGGCCTTCCAGCTGCTGCGCCGTTTCATGCAAGCCGAGGGCCGCCGTGCCACACTGCAGCGCCTGGTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 72 bp | CTCGTAGGCCAGCGAGTCGAGGGCAGGATCTCTCAGTaGCCGACAGTTACGCTGCAGCGAGCGCCCCACCCT | + |
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Preference number: 6 (lower is better) Translates to: LVGQRVEGRISQ*PTVTLQRAPHP Trigger: AGGGTGGGGCGCTCGCTGCAGCGTAACTGTCGGGCACTGAGAGATCCTGCCCTCGACTCGCTGGCCTACGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 72 bp | GTGAGTTCGTTCTCCTCCAGCGCCTCCACCAGGCGCTaGAGTGTGGCACGGCGGCCCTCGGCTTGCATGAAA | + |
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Preference number: 6 (lower is better) Translates to: VSSFSSSASTRR*SVARRPSACMK Trigger: TTTCATGCAAGCCGAGGGCCGCCGTGCCACACTGCAGCGCCTGGTGGAGGCGCTGGAGGAGAACGAACTCAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CCA 72 bp | CGGCGGCCCTCGGCTTGCATGAAACGGCGCAGCAGCTaGAAGGCCTGCTCGTATAGCCCATCACGCTCATAC | + |
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Preference number: 6 (lower is better) Translates to: RRPSACMKRRSS*KACSYSPSRSY Trigger: GTATGAGCGTGATGGGCTATACGAGCAGGCCTTCCAGCTGCTGCGCCGTTTCATGCAAGCCGAGGGCCGCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CAA 90 bp | CCTGCGCCACTTGAGACCCACCGAGCGCGCAAACGTCTGCTGGTCTaGAAGAGTCAGTGGCCGGTTCACTACGAGCTGCCCGTGGAACAG | + |
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Preference number: 6 (lower is better) Translates to: PAPLETHRARKRLLV*KSQWPVHYELPVEQ Trigger: CTGTTCCACGGGCAGCTCGTAGTGAACCGGCCACTGACTCTTCAAGACCAGCAGACGTTTGCGCGCTCGGTGGGTCTCAAGTGGCGCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CAA 90 bp | GCTACCTGTATGGCTCCACCCTGGCCAGTGCAGTCACACGTCAGTTaGCAGAGCTCATCCTCCAGCTCCGCGAGTTCCTCGTCCCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: ATCMAPPWPVQSHVS*QSSSSSSASSSSLS Trigger: GCTCAGGGACGAGGAACTCGCGGAGCTGGAGGATGAGCTCTGCAAACTGACGTGTGACTGCACTGGCCAGGGTGGAGCCATACAGGTAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS TCA 72 bp | TTGAGACCCACCGAGCGCGCAAACGTCTGCTGGTCTTaGAGAGTCAGTGGCCGGTTCACTACGAGCTGCCCG | + |
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Preference number: 6 (lower is better) Translates to: LRPTERANVCWS*RVSGRFTTSCP Trigger: CGGGCAGCTCGTAGTGAACCGGCCACTGACTCTTCAAGACCAGCAGACGTTTGCGCGCTCGGTGGGTCTCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS TCA 72 bp | AGCTCCGCGAGTTCCTCGTCCCTGAGCCGGTCGGGCTaGCAGTGCAGTCTGCAGAGCCTTGTATATTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SSASSSSLSRSG*QCSLQSLVYCH Trigger: GTGGCAATATACAAGGCTCTGCAGACTGCACTGTCAGCCCGACCGGCTCAGGGACGAGGAACTCGCGGAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144762.8 |
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| CDS GCA 72 bp | TTCATCAGTCAGCCAACTGTCCAGCTGCTCCGCACCTaGACGCAACTCCAGCTGCAACCGCAGCGCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FISQPTVQLLRT*TQLQLQPQRFL Trigger: CAGGAAGCGCTGCGGTTGCAGCTGGAGTTGCGTGCAGGTGCGGAGCAGCTGGACAGTTGGCTGACTGATGAA 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 72 bp | TGGCTCCACCCTGGCCAGTGCAGTCACACGTCAGTTTaGAGAGCTCATCCTCCAGCTCCGCGAGTTCCTCGT | + |
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Preference number: 6 (lower is better) Translates to: WLHPGQCSHTSV*RAHPPAPRVPR Trigger: ACGAGGAACTCGCGGAGCTGGAGGATGAGCTCTGCAAACTGACGTGTGACTGCACTGGCCAGGGTGGAGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CAA 72 bp | ATGGCTCCACCCTGGCCAGTGCAGTCACACGTCAGTTaGCAGAGCTCATCCTCCAGCTCCGCGAGTTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: MAPPWPVQSHVS*QSSSSSSASSS Trigger: CGAGGAACTCGCGGAGCTGGAGGATGAGCTCTGCAAACTGACGTGTGACTGCACTGGCCAGGGTGGAGCCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS CAA 72 bp | CTTGAGACCCACCGAGCGCGCAAACGTCTGCTGGTCTaGAAGAGTCAGTGGCCGGTTCACTACGAGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: LETHRARKRLLV*KSQWPVHYELP Trigger: GGGCAGCTCGTAGTGAACCGGCCACTGACTCTTCAAGACCAGCAGACGTTTGCGCGCTCGGTGGGTCTCAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS TCA 72 bp | AGCACGCGCCCGCAGAACCGCAACTGGACGATGAGCTaGGGGTCGCTGCAGTGGATCTTGAGTATCTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: STRPQNRNWTMS*GSLQWILSICS Trigger: ACTGCAGATACTCAAGATCCACTGCAGCGACCCTCAGCTCATCGTCCAGTTGCGGTTCTGCGGGCGCGTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS TCA 72 bp | AGAGCTCATCCTCCAGCTCCGCGAGTTCCTCGTCCCTaGGCCGGTCGGGCTTCTGGGCTAAGATGTAATTCA | + |
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Preference number: 6 (lower is better) Translates to: RAHPPAPRVPRP*AGRASGLRCNS Trigger: TGAATTACATCTTAGCCCAGAAGCCCGACCGGCTCAGGGACGAGGAACTCGCGGAGCTGGAGGATGAGCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 72 bp | CTGCAGAAGCTACCTGTATGGCTCCACCCTGGCCAGTaGAGTCACACGTCAGTTTGCAGAGCTCATCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LQKLPVWLHPGQ*SHTSVCRAHPP Trigger: TGGAGGATGAGCTCTGCAAACTGACGTGTGACTGCACTGGCCAGGGTGGAGCCATACAGGTAGCTTCTGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034359.10 |
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| CDS GCA 72 bp | GATCACCTTGTCTACCGCAGACTCCAAAAACAGGTATaGACTGCCCACCCACTCCTCGTGGCCATTCTGACC | + |
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Preference number: 6 (lower is better) Translates to: DHLVYRRLQKQV*TAHPLLVAILT Trigger: GGTCAGAATGGCCACGAGGAGTGGGTGGGCAGTGCATACCTGTTTTTGGAGTCTGCGGTAGACAAGGTGATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034359.10 ENSMUST00000144762.8 |
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| CDS CCA 72 bp | CAGTCTGCAGAGCCTTGTATATTGCCACCTTCTTCTTaGGATCCGTGTAGGCTTCAGACAGGATCACCTTGT | + |
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Preference number: 6 (lower is better) Translates to: QSAEPCILPPSS*DPCRLQTGSPC Trigger: ACAAGGTGATCCTGTCTGAAGCCTACACGGATCCCAAGAAGAAGGTGGCAATATACAAGGCTCTGCAGACTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034359.10 ENSMUST00000144762.8 |
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