Pregenerated sensors for TRAC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076928Ensembl transcript IDs: ENSMUST00000103740.2, ENSMUST00000198398.5
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CGGCAGCAGTGCTTAGCTCTCCAGCAACCTTCCTCACAAATCTGGGAGATCCAGGAAGGAGCGGAGGGGTaGGGAGGATGGAGCTTGGGA | + |
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Preference number: 2 (lower is better) Translates to: RQQCLALQQPSSQIWEIQEGAEG*GGWSLG Trigger: TCCCAAGCTCCATCCTCCTCACCCCTCCGCTCCTTC...CTGGATCTCCCAGATTTGTGAGGAAGGTTGCTGGAGAGCTAAGCACTGCTGCCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| 3UTR-3UTR CCA 90 bp | TCTCCAGCAACCTTCCTCACAAATCTGGGAGATCCAGGTGGGATTGTGAATCAGGCCGTCTTGACGAGGTaGGAGGGCTCCTTTTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: SPATFLTNLGDPGGIVNQAVLTR*EGSFWL Trigger: AAGCCAAAAGGAGCCCTCCCACCTCGTCAAGACGGC...CTGATTCACAATCCCACCTGGATCTCCCAGATTTGTGAGGAAGGTTGCTGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| 3UTR-3UTR CCA 90 bp | TCTCCAGCAACCTTCCTCACAAATCTGGGAGATCCAGGTGGGATTGTGAATCAGGAGGAGGATGGAGCTTaGGAGTCAGGCTCTGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: SPATFLTNLGDPGGIVNQEEDGA*ESGSVS Trigger: ACTGACAGAGCCTGACTCCCAAGCTCCATCCTCCTC...CTGATTCACAATCCCACCTGGATCTCCCAGATTTGTGAGGAAGGTTGCTGGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| 3UTR GCA 72 bp | AGCAGCAGTGAGGGAGCTGAGTGGGTGCGGCAGCAGTaGTTAGCTCTCCAGCAACCTTCCTCACAAATCTGG | + |
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Preference number: 3 (lower is better) Translates to: SSSEGAEWVRQQ*LALQQPSSQIW Trigger: CCAGATTTGTGAGGAAGGTTGCTGGAGAGCTAAGCACTGCTGCCGCACCCACTCAGCTCCCTCACTGCTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| 3UTR TCA 72 bp | CCTTCCTCACAAATCTGGGAGATCCAGGTGGGATTGTaGATCAGGGCCAACCAGACCCCAGACAGCCGTCTT | + |
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Preference number: 3 (lower is better) Translates to: PSSQIWEIQVGL*IRANQTPDSRL Trigger: AAGACGGCTGTCTGGGGTCTGGTTGGCCCTGATTCACAATCCCACCTGGATCTCCCAGATTTGTGAGGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| 3UTR CCA 72 bp | TCCAGCAACCTTCCTCACAAATCTGGGAGATCCAGGTaGGATTGTGAATCAGGGCCAACCAGACCCCAGACA | + |
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Preference number: 3 (lower is better) Translates to: SSNLPHKSGRSR*DCESGPTRPQT Trigger: TGTCTGGGGTCTGGTTGGCCCTGATTCACAATCCCACCTGGATCTCCCAGATTTGTGAGGAAGGTTGCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| CDS-3UTR TCA 90 bp | TCTGGGAGATCCAGGTGGGATTGTGAATCAGGGCCAACCAGACCCCAGACAGCCATCACAGGGAACGTCTaGACTGGGGTAGGTGGCGTT | + |
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Preference number: 4 (lower is better) Translates to: SGRSRWDCESGPTRPQTAITGNV*TGVGGV Trigger: AACGCCACCTACCCCAGTTCAGACGTTCCCTGTGAT...GGCTGTCTGGGGTCTGGTTGGCCCTGATTCACAATCCCACCTGGATCTCCCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| CDS-3UTR CCA 90 bp | TCTGGGAGATCCAGGTGGGATTGTGAATCAGGGCCAACCAGACCCCAGACAGCCGGTTGCTCCAGGCAATaGCCCCATTGCTCTTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: SGRSRWDCESGPTRPQTAGCSRQ*PHCSWN Trigger: ATTCCAAGAGCAATGGGGCCATTGCCTGGAGCAACC...GGCTGTCTGGGGTCTGGTTGGCCCTGATTCACAATCCCACCTGGATCTCCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| CDS-3UTR CCA 90 bp | TCTGGGAGATCCAGGTGGGATTGTGAATCAGGGCCAACCAGACCCCAGACAGCCTCTTTGAAGATATCTTaGCAGGTGAAGCTTGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SGRSRWDCESGPTRPQTASLKIS*QVKLVW Trigger: CCAGACAAGCTTCACCTGCCAAGATATCTTCAAAGA...GGCTGTCTGGGGTCTGGTTGGCCCTGATTCACAATCCCACCTGGATCTCCCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| CDS-3UTR TCA 90 bp | TCTCCAGCAACCTTCCTCACAAATCTGGGAGATCCAGGTGGGATTGTGAATCAGAGATATCTTGGCAGGTaGAGCTTGTCTGGTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPATFLTNLGDPGGIVNQRYLGR*SLSGCS Trigger: GGAGCAACCAGACAAGCTTCACCTGCCAAGATATCT...CTGATTCACAATCCCACCTGGATCTCCCAGATTTGTGAGGAAGGTTGCTGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| CDS-3UTR CAA 90 bp | CTCACAAATCTGGGAGATCCAGGTGGGATTGTGAATCAGGGCCAACCAGACCCCGTGAAGCTTGTCTGGTaGCTCCAGGCAATGGCCCCA | + |
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Preference number: 5 (lower is better) Translates to: LTNLGDPGGIVNQGQPDPVKLVW*LQAMAP Trigger: TGGGGCCATTGCCTGGAGCAACCAGACAAGCTTCAC...GGGGTCTGGTTGGCCCTGATTCACAATCCCACCTGGATCTCCCAGATTTGTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198398.5 |
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| CDS TCA 90 bp | TGTTTCAAAGCTTTTCTCAGTCAACGTGGCATCACAGGGAACGTCTaGACTGGGGTAGGTGGCGTTGGTCTCTTTGAAGATATCTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: CFKAFLSQRGITGNV*TGVGGVGLFEDILA Trigger: TGCCAAGATATCTTCAAAGAGACCAACGCCACCTACCCCAGTTCAGACGTTCCCTGTGATGCCACGTTGACTGAGAAAAGCTTTGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103740.2 ENSMUST00000198398.5 |
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| CDS CCA 90 bp | GAAAGTTTAGGTTCATATCTGTTTCAAAGCTTTTCTCAGTCAACGTaGCATCACAGGGAACGTCTGAACTGGGGTAGGTGGCGTTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: ESLGSYLFQSFSQST*HHRERLNWGRWRWS Trigger: AGACCAACGCCACCTACCCCAGTTCAGACGTTCCCTGTGATGCCACGTTGACTGAGAAAAGCTTTGAAACAGATATGAACCTAAACTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103740.2 ENSMUST00000198398.5 |
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| CDS TCA 72 bp | GAGTCAAAGTCGGTGAACAGGCAGAGGGTGCTGTCCTaGGACCGAGGATCTTTTAACTGGTACACAGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: ESKSVNRQRVLS*DRGSFNWYTAG Trigger: ACCTGCTGTGTACCAGTTAAAAGATCCTCGGTCTCAGGACAGCACCCTCTGCCTGTTCACCGACTTTGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103740.2 ENSMUST00000198398.5 |
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| CDS CAA 72 bp | ACTGGGGTAGGTGGCGTTGGTCTCTTTGAAGATATCTaGGCAGGTGAAGCTTGTCTGGTTGCTCCAGGCAAT | + |
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Preference number: 6 (lower is better) Translates to: TGVGGVGLFEDI*AGEACLVAPGN Trigger: ATTGCCTGGAGCAACCAGACAAGCTTCACCTGCCAAGATATCTTCAAAGAGACCAACGCCACCTACCCCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103740.2 ENSMUST00000198398.5 |
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| CDS CAA 90 bp | CAGGTGAAGCTTGTCTGGTTGCTCCAGGCAATGGCCCCATTGCTCTaGGAATCCATAGCTTTCATGTCCAGCACAGTTTTGTCAGTGATG | + |
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Preference number: 6 (lower is better) Translates to: QVKLVWLLQAMAPLL*ESIAFMSSTVLSVM Trigger: CATCACTGACAAAACTGTGCTGGACATGAAAGCTATGGATTCCAAGAGCAATGGGGCCATTGCCTGGAGCAACCAGACAAGCTTCACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103740.2 ENSMUST00000198398.5 |
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| CDS CAA 90 bp | GCGTTGGTCTCTTTGAAGATATCTTGGCAGGTGAAGCTTGTCTGGTaGCTCCAGGCAATGGCCCCATTGCTCTTGGAATCCATAGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: ALVSLKISWQVKLVW*LQAMAPLLLESIAF Trigger: GAAAGCTATGGATTCCAAGAGCAATGGGGCCATTGCCTGGAGCAACCAGACAAGCTTCACCTGCCAAGATATCTTCAAAGAGACCAACGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103740.2 ENSMUST00000198398.5 |
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