Pregenerated sensors for TRA2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022858Ensembl transcript IDs: ENSMUST00000161286.8, ENSMUST00000162413.9, ENSMUST00000231312.2, ENSMUST00000232471.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATGGCTGTGGCTGTGGCGCCTGCGATAATCTCGGCTGTAAGACCTaGTCCGGGATCGTCTATGCGAGCGAGATCGTGATCGTGACCTTG | + |
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Preference number: 1 (lower is better) Translates to: NGCGCGACDNLGCKT*SGIVYASEIVIVTL Trigger: CAAGGTCACGATCACGATCTCGCTCGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAGATTATCGCAGGCGCCACAGCCACAGCCATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR GCA 90 bp | GGCGCCTGCGATAATCTCGGCTGTAAGACCTGCTCCGGGATCGTCTATGCGAGCCTTGGAGCGAGACCTTaGAGGTGTATGCCGTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: GACDNLGCKTCSGIVYASLGARP*RCMPCR Trigger: TCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAG...GCTCGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAGATTATCGCAGGCGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR CCA 90 bp | TGCGATAATCTCGGCTGTAAGACCTGCTCCGGGATCGTCTATGCGAGCGAGATCGCCTTGAGTCTTCCTTaGAGCGAGACCTTGCAGGTG | + |
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Preference number: 2 (lower is better) Translates to: CDNLGCKTCSGIVYASEIALSLP*SETLQV Trigger: CACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGC...GATCTCGCTCGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAGATTATCGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR CCA 90 bp | AAACACGCCAAGACAACAGTTGGGGTCAGGATTTGCCCGGTTCCCAACATGACGGTAGACATGGGAGAATaGCTGTGGCTGTGGCGCCTG | + |
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Preference number: 2 (lower is better) Translates to: KHAKTTVGVRICPVPNMTVDMGE*LWLWRL Trigger: CAGGCGCCACAGCCACAGCCATTCTCCCATGTCTAC...CGTCATGTTGGGAACCGGGCAAATCCTGACCCCAACTGTTGTCTTGGCGTGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR CAA 90 bp | TCAGACCTGGACCTGGACTTTGATCTAGAACGCCTTGAGTCTTCCTaGGAGCGAGACCTTGCAGGTGTATGCCGTGCAGATTTCCCCGAT | + |
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Preference number: 2 (lower is better) Translates to: SDLDLDFDLERLESS*ERDLAGVCRADFPD Trigger: ATCGGGGAAATCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGCGTTCTAGATCAAAGTCCAGGTCCAGGTCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR GCA 90 bp | AGTAGGATCGTGATCGAGAACGTGACCTGTATCCTCCACGACTGTAGTAAGGAGCTCGGCTGTAAGACCTaGTCCGGGATCGTCTATGCG | + |
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Preference number: 2 (lower is better) Translates to: SRIVIENVTCILHDCSKELGCKT*SGIVYA Trigger: CGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAG...CTCCTTACTACAGTCGTGGAGGATACAGGTCACGTTCTCGATCACGATCCTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR GCA 90 bp | AATAGTCTCGGCGGCGAGAACTGCCATAAGTGGGTCTCCCCATATAAATTCCTGTGCAGGTGTATGCCGTaGAGATTTCCCCGATCCGTG | + |
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Preference number: 2 (lower is better) Translates to: NSLGGENCHKWVSPYKFLCRCMP*RFPRSV Trigger: CACGGATCGGGGAAATCTGCACGGCATACACCTGCA...CAGGAATTTATATGGGGAGACCCACTTATGGCAGTTCTCGCCGCCGAGACTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR TCA 90 bp | GTGGCGCCTGCGATAATCTCGGCTGTAAGACCTGCTCCGGGATCGTCTATGCGATTCCGTTTCAAATTCTaGCTTCTTTCATCTTCCCCA | + |
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Preference number: 2 (lower is better) Translates to: VAPAIISAVRPAPGSSMRFRFKF*LLSSSP Trigger: TGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAA...TCGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAGATTATCGCAGGCGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR TCA 90 bp | CCGTGCAGATTTCCCCGATCCGTGAGCACTTCCACTTCGGGAAGCAGAACGGGATTCCGTTTCAAATTCTaGCTTCTTTCATCTTCCCCA | + |
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Preference number: 2 (lower is better) Translates to: PCRFPRSVSTSTSGSRTGFRFKF*LLSSSP Trigger: TGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAA...TCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATCTGCACGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000162413.9 ENSMUST00000232471.2 |
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| 3UTR-3UTR TCA 90 bp | TTCAGGAGATCCAGGGCTTCTGAGGCTTGCAGACTCCTATCTGTAAACATGCACGGCAGTCTTCATCCATaGCAAGGTTTGATGATCCCT | + |
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Preference number: 2 (lower is better) Translates to: FRRSRASEACRLLSVNMHGSLHP*QGLMIP Trigger: AGGGATCATCAAACCTTGTCATGGATGAAGACTGCC...GTGCATGTTTACAGATAGGAGTCTGCAAGCCTCAGAAGCCCTGGATCTCCTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR-3UTR CCA 90 bp | ATGCCGTGCAGATTTCCCCGATCCGTGAGCACTTCCACTTCGGGAAGCAGAACGTCAATATTCTACAAGTaGGACTTCTGGTCTGATAAT | + |
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Preference number: 2 (lower is better) Translates to: MPCRFPRSVSTSTSGSRTSIFYK*DFWSDN Trigger: ATTATCAGACCAGAAGTCCCACTTGTAGAATATTGA...CGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATCTGCACGGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000162413.9 ENSMUST00000232471.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGTCATATACAATAGACACATCAGCAATGGGGCCATATTTAGAGAACACTTCGATTTCCCCGATCCGTaGGCACTTCCACTTCGGGAA | + |
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Preference number: 2 (lower is better) Translates to: LVIYNRHISNGAIFREHFDFPDP*ALPLRE Trigger: TTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATC...GAAGTGTTCTCTAAATATGGCCCCATTGCTGATGTGTCTATTGTATATGACCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR CCA 90 bp | TGCGATAATCTCGGCTGTAAGACCTGCTCCGGGATCGTCTATGCGAGCGAGATCTCAATATTCTACAAGTaGGACTTCTGGTCTGATAAT | + |
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Preference number: 2 (lower is better) Translates to: CDNLGCKTCSGIVYASEISIFYK*DFWSDN Trigger: ATTATCAGACCAGAAGTCCCACTTGTAGAATATTGA...GATCTCGCTCGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAGATTATCGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR TCA 90 bp | TGGTTAACAAAATCTACAAAGCTCAGTTCAGGAGATCCAGGGCTTCTGAGGCTTCTCAAAACATTTGAGTaGATTGGGCCTCCTTTGGTA | + |
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Preference number: 2 (lower is better) Translates to: WLTKSTKLSSGDPGLLRLLKTFE*IGPPLV Trigger: TACCAAAGGAGGCCCAATTCACTCAAATGTTTTGAG...AAGCCTCAGAAGCCCTGGATCTCCTGAACTGAGCTTTGTAGATTTTGTTAACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAGGAGATCCAGGGCTTCTGAGGCTTGCAGACTCCTATCTGTAAACATGCACAGTGTGCTCTTTTTCTaGGATACATTTACTGTAAGT | + |
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Preference number: 2 (lower is better) Translates to: FRRSRASEACRLLSVNMHSVLFF*DTFTVS Trigger: ACTTACAGTAAATGTATCCCAGAAAAAGAGCACACT...GTGCATGTTTACAGATAGGAGTCTGCAAGCCTCAGAAGCCCTGGATCTCCTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR-3UTR CCA 90 bp | AAACTAGAGCCCCTCATTAGTTCAATGAGATTTATAAGGGGGATTTCCAGATATACAAGAGTCCATCTGTaGTGGAATGTATTGTCACTT | + |
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Preference number: 2 (lower is better) Translates to: KLEPLISSMRFIRGISRYTRVHL*WNVLSL Trigger: AAGTGACAATACATTCCACCACAGATGGACTCTTGT...ATATCTGGAAATCCCCCTTATAAATCTCATTGAACTAATGAGGGGCTCTAGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR CAA 90 bp | AGCAGATTTGTACTAAAAACATGCTTTGCAAAATACCCAGACATGTaGGGAGGTTATTTAATACAACCTCGCACCAAAGAGAAACATTCA | + |
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Preference number: 2 (lower is better) Translates to: SRFVLKTCFAKYPDM*GGYLIQPRTKEKHS Trigger: TGAATGTTTCTCTTTGGTGCGAGGTTGTATTAAATAACCTCCCAACATGTCTGGGTATTTTGCAAAGCATGTTTTTAGTACAAATCTGCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR CAA 90 bp | ATTCTATACCTTGTTGAGAACTTGTTGCTCTTGAAAGACTCAGGTTaGACTTTCAAACTTCACATGGTGGTTAACAAAATCTACAAAGCT | + |
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Preference number: 2 (lower is better) Translates to: ILYLVENLLLLKDSG*TFKLHMVVNKIYKA Trigger: AGCTTTGTAGATTTTGTTAACCACCATGTGAAGTTTGAAAGTCAAACCTGAGTCTTTCAAGAGCAACAAGTTCTCAACAAGGTATAGAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR GCA 72 bp | GGCTGTGGCGCCTGCGATAATCTCGGCTGTAAGACCTaGTCCGGGATCGTCTATGCGAGCGAGATCGTGATC | + |
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Preference number: 3 (lower is better) Translates to: GCGACDNLGCKT*SGIVYASEIVI Trigger: GATCACGATCTCGCTCGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAGATTATCGCAGGCGCCACAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR CAA 90 bp | TGCGATAATCTCGGCTGTAAGACCTGCTCCGGGATCGTCTATGCGAGCGAGATCCGCCTTGAGTCTTCCTaGGAGCGAGACCTTGCAGGT | + |
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Preference number: 3 (lower is better) Translates to: CDNLGCKTCSGIVYASEIRLESS*ERDLAG Trigger: ACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGCG...GATCTCGCTCGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAGATTATCGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR GCA 72 bp | GTCTTCCTTGGAGCGAGACCTTGCAGGTGTATGCCGTaGAGATTTCCCCGATCCGTGAGCACTTCCACTTCG | + |
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Preference number: 3 (lower is better) Translates to: VFLGARPCRCMP*RFPRSVSTSTS Trigger: CGAAGTGGAAGTGCTCACGGATCGGGGAAATCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGGAAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR TCA 72 bp | CTTGCAGGTGTATGCCGTGCAGATTTCCCCGATCCGTaGGCACTTCCACTTCGGGAAGCAGAACGGGATTCT | + |
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Preference number: 3 (lower is better) Translates to: LAGVCRADFPDP*ALPLREAERDS Trigger: AGAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATCTGCACGGCATACACCTGCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR TCA 72 bp | CAACAGTTGGGGTCAGGATTTGCCCGGTTCCCAACATaGCGCCTTCGAGTAGACATGGGAGAATGGCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: QQLGSGFARFPT*RLRVDMGEWLW Trigger: CCACAGCCATTCTCCCATGTCTACTCGAAGGCGTCATGTTGGGAACCGGGCAAATCCTGACCCCAACTGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR CAA 90 bp | AGTAGGATCGTGATCGAGAACGTGACCTGTATCCTCCACGACTGTAGTAAGGAGCCTTGGAGCGAGACCTaGCAGGTGTATGCCGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: SRIVIENVTCILHDCSKEPWSET*QVYAVQ Trigger: CTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGG...CTCCTTACTACAGTCGTGGAGGATACAGGTCACGTTCTCGATCACGATCCTACT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR CAA 90 bp | AATAGTCTCGGCGGCGAGAACTGCCATAAGTGGGTCTCCCCATATAAATTCCTGACGCCAAGACAACAGTaGGGGTCAGGATTTGCCCGG | + |
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Preference number: 3 (lower is better) Translates to: NSLGGENCHKWVSPYKFLTPRQQ*GSGFAR Trigger: CCGGGCAAATCCTGACCCCAACTGTTGTCTTGGCGT...CAGGAATTTATATGGGGAGACCCACTTATGGCAGTTCTCGCCGCCGAGACTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR CCA 72 bp | TGTATAAGCTCAACCCAAACACGCCAAGACAACAGTTaGGGTCAGGATTTGCCCGGTTCCCAACATGACGCC | + |
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Preference number: 3 (lower is better) Translates to: CISSTQTRQDNS*GQDLPGSQHDA Trigger: GGCGTCATGTTGGGAACCGGGCAAATCCTGACCCCAACTGTTGTCTTGGCGTGTTTGGGTTGAGCTTATACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGAGATCCAGGGCTTCTGAGGCTTGCAGACTCCTATCTGTAAACATGCACCAGTTCTCAAAACATTaGAGTGAATTGGGCCTCCTT | + |
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Preference number: 3 (lower is better) Translates to: FRRSRASEACRLLSVNMHQFSKH*SELGLL Trigger: AAGGAGGCCCAATTCACTCAAATGTTTTGAGAACTG...GTGCATGTTTACAGATAGGAGTCTGCAAGCCTCAGAAGCCCTGGATCTCCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR GCA 72 bp | AAAGCTCAGTTCAGGAGATCCAGGGCTTCTGAGGCTTaGAGACTCCTATCTGTAAACATGCACAAGTTCATG | + |
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Preference number: 3 (lower is better) Translates to: KAQFRRSRASEA*RLLSVNMHKFM Trigger: CATGAACTTGTGCATGTTTACAGATAGGAGTCTGCAAGCCTCAGAAGCCCTGGATCTCCTGAACTGAGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR TCA 72 bp | AATCTACAAAGCTCAGTTCAGGAGATCCAGGGCTTCTaGGGCTTGCAGACTCCTATCTGTAAACATGCACAA | + |
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Preference number: 3 (lower is better) Translates to: NLQSSVQEIQGF*GLQTPICKHAQ Trigger: TTGTGCATGTTTACAGATAGGAGTCTGCAAGCCTCAGAAGCCCTGGATCTCCTGAACTGAGCTTTGTAGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR TCA 72 bp | CAGAATGAGCAGCAGGCTTTGTTCATGACACAGGTGTaGTCTCTTCTCTCATTCTATACCTTGTTGAGAACT | + |
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Preference number: 3 (lower is better) Translates to: QNEQQALFMTQV*SLLSFYTLLRT Trigger: AGTTCTCAACAAGGTATAGAATGAGAGAAGAGATCACACCTGTGTCATGAACAAAGCCTGCTGCTCATTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR TCA 72 bp | CACAGGTGTGATCTCTTCTCTCATTCTATACCTTGTTaGGAACTTGTTGCTCTTGAAAGACTCAGGTTTGAC | + |
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Preference number: 3 (lower is better) Translates to: HRCDLFSHSIPC*ELVALERLRFD Trigger: GTCAAACCTGAGTCTTTCAAGAGCAACAAGTTCTCAACAAGGTATAGAATGAGAGAAGAGATCACACCTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR TCA 72 bp | AATCATATTTACAGAATGAGCAGCAGGCTTTGTTCATaGCACAGGTGTGATCTCTTCTCTCATTCTATACCT | + |
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Preference number: 3 (lower is better) Translates to: NHIYRMSSRLCS*HRCDLFSHSIP Trigger: AGGTATAGAATGAGAGAAGAGATCACACCTGTGTCATGAACAAAGCCTGCTGCTCATTCTGTAAATATGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR GCA 72 bp | ACAGCCTTAAACAGAAGCAGATTTGTACTAAAAACATaGTTTGCAAAATACCCAGACATGTTGGGAGGTTAT | + |
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Preference number: 3 (lower is better) Translates to: TALNRSRFVLKT*FAKYPDMLGGY Trigger: ATAACCTCCCAACATGTCTGGGTATTTTGCAAAGCATGTTTTTAGTACAAATCTGCTTCTGTTTAAGGCTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR CCA 72 bp | AACCTAGTTATCAAAAACATCAGTGTGCTCTTTTTCTaGGATACATTTACTGTAAGTTTGGCTGTCCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: NLVIKNISVLFF*DTFTVSLAVQK Trigger: TTTCTGGACAGCCAAACTTACAGTAAATGTATCCCAGAAAAAGAGCACACTGATGTTTTTGATAACTAGGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR CAA 72 bp | GACCTGGACTTTGATCTAGAACGCCTTGAGTCTTCCTaGGAGCGAGACCTTGCAGGTGTATGCCGTGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: DLDFDLERLESS*ERDLAGVCRAD Trigger: ATCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGCGTTCTAGATCAAAGTCCAGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| CDS-3UTR GCA 90 bp | TTCAGGAGATCCAGGGCTTCTGAGGCTTGCAGACTCCTATCTGTAAACATGCACTGCAGGTGTATGCCGTaGAGATTTCCCCGATCCGTG | + |
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Preference number: 4 (lower is better) Translates to: FRRSRASEACRLLSVNMHCRCMP*RFPRSV Trigger: CACGGATCGGGGAAATCTGCACGGCATACACCTGCA...GTGCATGTTTACAGATAGGAGTCTGCAAGCCTCAGAAGCCCTGGATCTCCTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CCA 90 bp | AGGCAGTCTTCATCCATGACAAGGTTTGATGATCCCTTCGCTCCTTCCATACTTGCCTTGAGTCTTCCTTaGAGCGAGACCTTGCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: RQSSSMTRFDDPFAPSILALSLP*SETLQV Trigger: CACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGC...AAGTATGGAAGGAGCGAAGGGATCATCAAACCTTGTCATGGATGAAGACTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR TCA 90 bp | TGGTTAACAAAATCTACAAAGCTCAGTTCAGGAGATCCAGGGCTTCTGAGGCTTGATTTCCCCGATCCGTaGGCACTTCCACTTCGGGAA | + |
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Preference number: 4 (lower is better) Translates to: WLTKSTKLSSGDPGLLRLDFPDP*ALPLRE Trigger: TTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATC...AAGCCTCAGAAGCCCTGGATCTCCTGAACTGAGCTTTGTAGATTTTGTTAACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR TCA 90 bp | CTAGAGCCCCTCATTAGTTCAATGAGATTTATAAGGGGGATTTCCAGATATTCCGCCCGGTTCCCAACATaGCGCCTTCGAGTAGACATG | + |
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Preference number: 4 (lower is better) Translates to: LEPLISSMRFIRGISRYSARFPT*RLRVDM Trigger: CATGTCTACTCGAAGGCGTCATGTTGGGAACCGGGC...GGAATATCTGGAAATCCCCCTTATAAATCTCATTGAACTAATGAGGGGCTCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR TCA 90 bp | TCCCCGATCCGTGAGCACTTCCACTTCGGGAAGCAGAACGGGATTCTTAGCGTAATAAAACTTGTCAAATaGCGACTTCCGCATTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: SPIREHFHFGKQNGILSVIKLVK*RLPHFP Trigger: AGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTAT...TACGCTAAGAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162413.9 |
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| CDS-3UTR GCA 90 bp | TGGTTAACAAAATCTACAAAGCTCAGTTCAGGAGATCCAGGGCTTCTGAGGCTTGACCTTGCAGGTGTATaGCGTGCAGATTTCCCCGAT | + |
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Preference number: 4 (lower is better) Translates to: WLTKSTKLSSGDPGLLRLDLAGV*RADFPD Trigger: ATCGGGGAAATCTGCACGGCATACACCTGCAAGGTC...AAGCCTCAGAAGCCCTGGATCTCCTGAACTGAGCTTTGTAGATTTTGTTAACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR GCA 90 bp | CTAGAGCCCCTCATTAGTTCAATGAGATTTATAAGGGGGATTTCCAGATATTCCCTTGGAGCGAGACCTTaGAGGTGTATGCCGTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LEPLISSMRFIRGISRYSLGARP*RCMPCR Trigger: TCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAG...GGAATATCTGGAAATCCCCCTTATAAATCTCATTGAACTAATGAGGGGCTCTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR GCA 90 bp | TTGTTGCTCTTGAAAGACTCAGGTTTGACTTTCAAACTTCACATGGTGGTTAACCTCGGCTGTAAGACCTaGTCCGGGATCGTCTATGCG | + |
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Preference number: 4 (lower is better) Translates to: LLLLKDSGLTFKLHMVVNLGCKT*SGIVYA Trigger: CGCATAGACGATCCCGGAGCAGGTCTTACAGCCGAG...GTTAACCACCATGTGAAGTTTGAAAGTCAAACCTGAGTCTTTCAAGAGCAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CCA 90 bp | CCTCGCACCAAAGAGAAACATTCATTCCAGTTCTACTTGGCCAATATATTTGAGCGCCAAGACAACAGTTaGGGTCAGGATTTGCCCGGT | + |
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Preference number: 4 (lower is better) Translates to: PRTKEKHSFQFYLANIFERQDNS*GQDLPG Trigger: ACCGGGCAAATCCTGACCCCAACTGTTGTCTTGGCG...CTCAAATATATTGGCCAAGTAGAACTGGAATGAATGTTTCTCTTTGGTGCGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CCA 90 bp | TTGTTGCTCTTGAAAGACTCAGGTTTGACTTTCAAACTTCACATGGTGGTTAACGTAGACATGGGAGAATaGCTGTGGCTGTGGCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LLLLKDSGLTFKLHMVVNVDMGE*LWLWRL Trigger: CAGGCGCCACAGCCACAGCCATTCTCCCATGTCTAC...GTTAACCACCATGTGAAGTTTGAAAGTCAAACCTGAGTCTTTCAAGAGCAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CCA 90 bp | CCTCGCACCAAAGAGAAACATTCATTCCAGTTCTACTTGGCCAATATATTTGAGCCTGGTGTTGGGGTATaGGGCCTTTTTGTTATAGAG | + |
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Preference number: 4 (lower is better) Translates to: PRTKEKHSFQFYLANIFEPGVGV*GLFVIE Trigger: CTCTATAACAAAAAGGCCCCATACCCCAACACCAGG...CTCAAATATATTGGCCAAGTAGAACTGGAATGAATGTTTCTCTTTGGTGCGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR TCA 90 bp | ATACCCAGACATGTTGGGAGGTTATTTAATACAACCTCGCACCAAAGAGAAACAAAAGGCAAATCCTCTTaGACGTCTAGATTGCTGGTC | + |
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Preference number: 4 (lower is better) Translates to: IPRHVGRLFNTTSHQRETKGKSS*TSRLLV Trigger: GACCAGCAATCTAGACGTTCAAGAGGATTTGCCTTT...TGTTTCTCTTTGGTGCGAGGTTGTATTAAATAACCTCCCAACATGTCTGGGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR GCA 90 bp | TGGTTAACAAAATCTACAAAGCTCAGTTCAGGAGATCCAGGGCTTCTGAGGCTTCTTGAACGTCTAGATTaGTGGTCATATACAATAGAC | + |
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Preference number: 4 (lower is better) Translates to: WLTKSTKLSSGDPGLLRLLERLD*WSYTID Trigger: GTCTATTGTATATGACCAGCAATCTAGACGTTCAAG...AAGCCTCAGAAGCCCTGGATCTCCTGAACTGAGCTTTGTAGATTTTGTTAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CCA 90 bp | TGGTTAACAAAATCTACAAAGCTCAGTTCAGGAGATCCAGGGCTTCTGAGGCTTGAACGTCTAGATTGCTaGTCATATACAATAGACACA | + |
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Preference number: 4 (lower is better) Translates to: WLTKSTKLSSGDPGLLRLERLDC*SYTIDT Trigger: TGTGTCTATTGTATATGACCAGCAATCTAGACGTTC...AAGCCTCAGAAGCCCTGGATCTCCTGAACTGAGCTTTGTAGATTTTGTTAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CCA 90 bp | AAGCAGATTTGTACTAAAAACATGCTTTGCAAAATACCCAGACATGTTGGGAGGATAAATTCCTGGTGTTaGGGTATGGGGCCTTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: KQICTKNMLCKIPRHVGRINSWC*GMGPFC Trigger: ACAAAAAGGCCCCATACCCCAACACCAGGAATTTAT...CCTCCCAACATGTCTGGGTATTTTGCAAAGCATGTTTTTAGTACAAATCTGCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CCA 90 bp | TTGTTGCTCTTGAAAGACTCAGGTTTGACTTTCAAACTTCACATGGTGGTTAACTTAGGTCTCTTTCTGTaGTGTATAAGCTCAACCCAA | + |
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Preference number: 4 (lower is better) Translates to: LLLLKDSGLTFKLHMVVNLGLFL*CISSTQ Trigger: TTGGGTTGAGCTTATACACCACAGAAAGAGACCTAA...GTTAACCACCATGTGAAGTTTGAAAGTCAAACCTGAGTCTTTCAAGAGCAACAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CCA 90 bp | AAACTAGAGCCCCTCATTAGTTCAATGAGATTTATAAGGGGGATTTCCAGATATGAGAACTGCCATAAGTaGGTCTCCCCATATAAATTC | + |
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Preference number: 4 (lower is better) Translates to: KLEPLISSMRFIRGISRYENCHK*VSPYKF Trigger: GAATTTATATGGGGAGACCCACTTATGGCAGTTCTC...ATATCTGGAAATCCCCCTTATAAATCTCATTGAACTAATGAGGGGCTCTAGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR CAA 72 bp | GTACTAAAAACATGCTTTGCAAAATACCCAGACATGTaGGGAGGTTATTTAATACAACCTCGCACCAAAGAG | + |
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Preference number: 4 (lower is better) Translates to: VLKTCFAKYPDM*GGYLIQPRTKE Trigger: CTCTTTGGTGCGAGGTTGTATTAAATAACCTCCCAACATGTCTGGGTATTTTGCAAAGCATGTTTTTAGTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR TCA 90 bp | TCTTTCATCTTCCCCACTTCACACAAATTGCTCAATATTCTACAAGTGGGACTTATAAAACTTGTCAAATaGCGACTTCCGCATTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: SFIFPTSHKLLNILQVGLIKLVK*RLPHFP Trigger: AGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTAT...AAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000162413.9 ENSMUST00000231312.2 ENSMUST00000232471.2 |
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| 3UTR CAA 72 bp | CTTGTTGAGAACTTGTTGCTCTTGAAAGACTCAGGTTaGACTTTCAAACTTCACATGGTGGTTAACAAAATC | + |
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Preference number: 4 (lower is better) Translates to: LVENLLLLKDSG*TFKLHMVVNKI Trigger: GATTTTGTTAACCACCATGTGAAGTTTGAAAGTCAAACCTGAGTCTTTCAAGAGCAACAAGTTCTCAACAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR CAA 72 bp | GTGATCTCTTCTCTCATTCTATACCTTGTTGAGAACTaGTTGCTCTTGAAAGACTCAGGTTTGACTTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: VISSLILYLVEN*LLLKDSGLTFK Trigger: TTTGAAAGTCAAACCTGAGTCTTTCAAGAGCAACAAGTTCTCAACAAGGTATAGAATGAGAGAAGAGATCAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| 3UTR CAA 72 bp | ATCTCTTCTCTCATTCTATACCTTGTTGAGAACTTGTaGCTCTTGAAAGACTCAGGTTTGACTTTCAAACTT | + |
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Preference number: 4 (lower is better) Translates to: ISSLILYLVENL*LLKDSGLTFKL Trigger: AAGTTTGAAAGTCAAACCTGAGTCTTTCAAGAGCAACAAGTTCTCAACAAGGTATAGAATGAGAGAAGAGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS TCA 90 bp | GAGCGAGACCTTGCAGGTGTATGCCGTGCAGATTTCCCCGATCCGTaGGCACTTCCACTTCGGGAAGCAGAACGGGATTCCCGCTCGCCG | + |
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Preference number: 5 (lower is better) Translates to: ERDLAGVCRADFPDP*ALPLREAERDSRSP Trigger: CGGCGAGCGGGAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATCTGCACGGCATACACCTGCAAGGTCTCGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CAA 90 bp | AGGCAGTCTTCATCCATGACAAGGTTTGATGATCCCTTCGCTCCTTCCATACTTACGCCAAGACAACAGTaGGGGTCAGGATTTGCCCGG | + |
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Preference number: 5 (lower is better) Translates to: RQSSSMTRFDDPFAPSILTPRQQ*GSGFAR Trigger: CCGGGCAAATCCTGACCCCAACTGTTGTCTTGGCGT...AAGTATGGAAGGAGCGAAGGGATCATCAAACCTTGTCATGGATGAAGACTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CAA 90 bp | CCTCGCACCAAAGAGAAACATTCATTCCAGTTCTACTTGGCCAATATATTTGAGCCTTGGAGCGAGACCTaGCAGGTGTATGCCGTGCAG | + |
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Preference number: 5 (lower is better) Translates to: PRTKEKHSFQFYLANIFEPWSET*QVYAVQ Trigger: CTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGG...CTCAAATATATTGGCCAAGTAGAACTGGAATGAATGTTTCTCTTTGGTGCGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CAA 90 bp | CTAGAGCCCCTCATTAGTTCAATGAGATTTATAAGGGGGATTTCCAGATATTCCCGCCTTGAGTCTTCCTaGGAGCGAGACCTTGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: LEPLISSMRFIRGISRYSRLESS*ERDLAG Trigger: ACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGCG...GGAATATCTGGAAATCCCCCTTATAAATCTCATTGAACTAATGAGGGGCTCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CAA 90 bp | TGGTTAACAAAATCTACAAAGCTCAGTTCAGGAGATCCAGGGCTTCTGAGGCTTCGTTCTTTAGCTTCCTaGGCATCGTCTACATTTTCA | + |
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Preference number: 5 (lower is better) Translates to: WLTKSTKLSSGDPGLLRLRSLAS*ASSTFS Trigger: TGAAAATGTAGACGATGCCAAGGAAGCTAAAGAACG...AAGCCTCAGAAGCCCTGGATCTCCTGAACTGAGCTTTGTAGATTTTGTTAACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CAA 90 bp | CTAGAGCCCCTCATTAGTTCAATGAGATTTATAAGGGGGATTTCCAGATATTCCTCAAGCTCCATTCCATaGGCACGTTCTTTAGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LEPLISSMRFIRGISRYSSSSIP*ARSLAS Trigger: GGAAGCTAAAGAACGTGCCAATGGAATGGAGCTTGA...GGAATATCTGGAAATCCCCCTTATAAATCTCATTGAACTAATGAGGGGCTCTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS-3UTR CAA 90 bp | AAACTAGAGCCCCTCATTAGTTCAATGAGATTTATAAGGGGGATTTCCAGATATAATCTGATCCCTGTCTaGAGCTGCTCTCCATCCACC | + |
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Preference number: 5 (lower is better) Translates to: KLEPLISSMRFIRGISRYNLIPV*SCSPST Trigger: GGTGGATGGAGAGCAGCTCAAGACAGGGATCAGATT...ATATCTGGAAATCCCCCTTATAAATCTCATTGAACTAATGAGGGGCTCTAGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS TCA 72 bp | CTTGCAGGTGTATGCCGTGCAGATTTCCCCGATCCGTaGGCACTTCCACTTCGGGAAGCAGAACGGGATTCC | + |
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Preference number: 6 (lower is better) Translates to: LAGVCRADFPDP*ALPLREAERDS Trigger: GGAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATCTGCACGGCATACACCTGCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161286.8 |
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| CDS TCA 72 bp | CTGAGCTTCAAATACTCATTTATAAAACTTGTCAAATaGCGACTTCCGCATTTTCCTTCTTCAACATTAACC | + |
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Preference number: 6 (lower is better) Translates to: LSFKYSFIKLVK*RLPHFPSSTLT Trigger: GGTTAATGTTGAAGAAGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTATAAATGAGTATTTGAAGCTCAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000162413.9 ENSMUST00000231312.2 ENSMUST00000232471.2 |
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