Pregenerated sensors for TRA2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029817Ensembl transcript IDs: ENSMUST00000031841.9, ENSMUST00000203820.3, ENSMUST00000204189.3
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAGTATCAATAGCGTCTTGGACTATAGGAACGGGATCTCGATCGTaGCCTGTAGCGACTGTAGTAAGGAGAGGGCGACCTTCTTCTGTA | + |
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Preference number: 1 (lower is better) Translates to: PVSIASWTIGTGSRS*PVATVVRRGRPSSV Trigger: TACAGAAGAAGGTCGCCCTCTCCTTACTACAGTCGCTACAGGTCACGATCGAGATCCCGTTCCTATAGTCCAAGACGCTATTGATACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR TCA 90 bp | ACTCAACTATTCAACTGCTCCATGCCACTCCAGACAAAGCTGGCATaGCTGACCTACTTAAAGTGTTATTTACCTTCCCCAAGAAGATTA | + |
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Preference number: 1 (lower is better) Translates to: TQLFNCSMPLQTKLA*LTYLKCYLPSPRRL Trigger: TAATCTTCTTGGGGAAGGTAAATAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATGGAGCAGTTGAATAGTTGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR GCA 90 bp | GACTGTAGTAAGGAGAGGGCGACCTTCTTCTGTACCGGTAATCATAATCTTCGTCAGCTCCATCCCATTTaGTCTCTCCATAGCCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: DCSKERATFFCTGNHNLRQLHPI*SLHSLL Trigger: AAGGAGGCTATGGAGAGAGCAAATGGGATGGAGCTG...ACGAAGATTATGATTACCGGTACAGAAGAAGGTCGCCCTCTCCTTACTACAGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR-3UTR CCA 90 bp | CAATCCTCTGTAAAGGCAAAGAAGAACCACAAAGCAGAACCCGGGCTCCCTTTCGGAAGCATGGAAGCTTaGGAATCCAAAATCAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: QSSVKAKKNHKAEPGLPFGSMEA*ESKIKK Trigger: CTTTTTGATTTTGGATTCCCAAGCTTCCATGCTTCC...GAAAGGGAGCCCGGGTTCTGCTTTGTGGTTCTTCTTTGCCTTTACAGAGGATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR TCA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCCAGACAAAGCTGGCATaGCTGACCTACTTAAAGTGT | + |
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Preference number: 2 (lower is better) Translates to: QVVWFWFKGLGSMEAWESQTKLA*LTYLKC Trigger: ACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTG...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR TCA 90 bp | CCCCACATGTATTTTAGGATCCTATACAATAACCCATGTAACCAATGTCCCAATCGAGATCGTCTCCTATaGGAGTGTGACCTGGATCGA | + |
|
Preference number: 2 (lower is better) Translates to: PHMYFRILYNNPCNQCPNRDRLL*ECDLDR Trigger: TCGATCCAGGTCACACTCTCATAGGAGACGATCTCG...ATTGGGACATTGGTTACATGGGTTATTGTATAGGATCCTAAAATACATGTGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR-3UTR CCA 90 bp | AGAACCCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACGAGTATAACAAAGGGTaGAAACAGCAACACAACTGG | + |
|
Preference number: 2 (lower is better) Translates to: RTRAPFHSGCSLLKRQLHEYNKG*KQQHNW Trigger: CCAGTTGTGTTGCTGTTTCCACCCTTTGTTATACTC...GTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGGGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CCA 90 bp | TCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGAGTATGCCCATGTAAATGCCTaGTGTGGGTGTGTGCGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: SLSLRMFTTEKTITPLEYAHVNA*CGCVRS Trigger: AGAGCGCACACACCCACACCAGGCATTTACATGGGC...ATACTCTAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR-3UTR CCA 90 bp | AGAACCCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCAGGTTGTTTGGTTTTaGTTTAAAGGACTAGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: RTRAPFHSGCSLLKRQLHQVVWF*FKGLGS Trigger: GCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG...GTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGGGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CCA 90 bp | CATGCCACTCCAGACAAAGCTGGCATGACTGACCTACTTAAAGTGTTATTTACCGAGTATAACAAAGGGTaGAAACAGCAACACAACTGG | + |
|
Preference number: 2 (lower is better) Translates to: HATPDKAGMTDLLKVLFTEYNKG*KQQHNW Trigger: CCAGTTGTGTTGCTGTTTCCACCCTTTGTTATACTC...GGTAAATAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CCA 90 bp | CCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGGAAGCATGGAAGCTTaGGAATCCAAAATCAAAAAG | + |
|
Preference number: 2 (lower is better) Translates to: PGSLSLRMFTTEKTITPLGSMEA*ESKIKK Trigger: CTTTTTGATTTTGGATTCCCAAGCTTCCATGCTTCC...TAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CCA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCGGAAGCATGGAAGCTTaGGAATCCAAAATCAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: QVVWFWFKGLGSMEAWESGSMEA*ESKIKK Trigger: CTTTTTGATTTTGGATTCCCAAGCTTCCATGCTTCC...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CCA 90 bp | CCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTACAGGTTGTTTGGTTTTaGTTTAAAGGACTAGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: PGSLSLRMFTTEKTITPLQVVWF*FKGLGS Trigger: GCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG...TAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR TCA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCCAGGATGTTCACTACTaGAAAGACAATTACACCTTT | + |
|
Preference number: 2 (lower is better) Translates to: QVVWFWFKGLGSMEAWESQDVHY*KDNYTF Trigger: AAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTG...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR TCA 90 bp | CATGCCACTCCAGACAAAGCTGGCATGACTGACCTACTTAAAGTGTTATTTACCCAGGATGTTCACTACTaGAAAGACAATTACACCTTT | + |
|
Preference number: 2 (lower is better) Translates to: HATPDKAGMTDLLKVLFTQDVHY*KDNYTF Trigger: AAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTG...GGTAAATAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR GCA 90 bp | CCCCACATGTATTTTAGGATCCTATACAATAACCCATGTAACCAATGTCCCAATACTCAACTATTCAACTaGTCCATGCCACTCCAGACA | + |
|
Preference number: 2 (lower is better) Translates to: PHMYFRILYNNPCNQCPNTQLFN*SMPLQT Trigger: TGTCTGGAGTGGCATGGAGCAGTTGAATAGTTGAGT...ATTGGGACATTGGTTACATGGGTTATTGTATAGGATCCTAAAATACATGTGGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CCA 90 bp | TCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGAGTATTCCTTGACCTTGACCTaGACTTTGATCTTGATCGAG | + |
|
Preference number: 2 (lower is better) Translates to: SLSLRMFTTEKTITPLEYSLTLT*TLILIE Trigger: CTCGATCAAGATCAAAGTCCAGGTCAAGGTCAAGGA...ATACTCTAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGAGTATCAGGATGTTCACTACTaGAAAGACAATTACACCTTT | + |
|
Preference number: 2 (lower is better) Translates to: SLSLRMFTTEKTITPLEYQDVHY*KDNYTF Trigger: AAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTG...ATACTCTAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR GCA 72 bp | CTCCTCCGCCACCTCCACCACCGCTGTGAGTTGGTCTaGCCATGTAAATGCCTGGTGTGGGTGTGTGCGCTC | + |
|
Preference number: 3 (lower is better) Translates to: LLRHLHHRCELV*PCKCLVWVCAL Trigger: GAGCGCACACACCCACACCAGGCATTTACATGGGCAGACCAACTCACAGCGGTGGTGGAGGTGGCGGAGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR TCA 72 bp | ATAGGACCTACTCCGAGATCGTCTCCTATGAGAGTGTaGCCTGGATCGAGTGTAGCGTCTATGCGAATGCCT | + |
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Preference number: 3 (lower is better) Translates to: IGPTPRSSPMRV*PGSSVASMRMP Trigger: AGGCATTCGCATAGACGCTACACTCGATCCAGGTCACACTCTCATAGGAGACGATCTCGGAGTAGGTCCTAT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR-3UTR CAA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCACTCCCAAGCAAGTGTaGGGATCTGGGTTTGCCCTG | + |
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Preference number: 3 (lower is better) Translates to: QVVWFWFKGLGSMEAWESTPKQV*GSGFAL Trigger: CAGGGCAAACCCAGATCCCAACACTTGCTTGGGAGT...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR-3UTR CAA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCCACCACCGCTGTGAGTaGGTCTGCCCATGTAAATGC | + |
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Preference number: 3 (lower is better) Translates to: QVVWFWFKGLGSMEAWESHHRCE*VCPCKC Trigger: GCATTTACATGGGCAGACCAACTCACAGCGGTGGTG...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR TCA 72 bp | TTCAACTGCTCCATGCCACTCCAGACAAAGCTGGCATaGCTGACCTACTTAAAGTGTTATTTACCTTCCCCA | + |
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Preference number: 3 (lower is better) Translates to: FNCSMPLQTKLA*LTYLKCYLPSP Trigger: TGGGGAAGGTAAATAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATGGAGCAGTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CAA 90 bp | TCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGAGTATTGTTGGGATCTGGGTTaGCCCTGCTTCCAGTATGCC | + |
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Preference number: 3 (lower is better) Translates to: SLSLRMFTTEKTITPLEYCWDLG*PCFQYA Trigger: GGCATACTGGAAGCAGGGCAAACCCAGATCCCAACA...ATACTCTAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| 3UTR-3UTR CAA 90 bp | CATGCCACTCCAGACAAAGCTGGCATGACTGACCTACTTAAAGTGTTATTTACCAGGAAGCATGGAAGCTaGGGAATCCAAAATCAAAAA | + |
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Preference number: 3 (lower is better) Translates to: HATPDKAGMTDLLKVLFTRKHGS*GIQNQK Trigger: TTTTTGATTTTGGATTCCCAAGCTTCCATGCTTCCT...GGTAAATAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CAA 90 bp | CCCCACATGTATTTTAGGATCCTATACAATAACCCATGTAACCAATGTCCCAATAGGAAGCATGGAAGCTaGGGAATCCAAAATCAAAAA | + |
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Preference number: 3 (lower is better) Translates to: PHMYFRILYNNPCNQCPNRKHGS*GIQNQK Trigger: TTTTTGATTTTGGATTCCCAAGCTTCCATGCTTCCT...ATTGGGACATTGGTTACATGGGTTATTGTATAGGATCCTAAAATACATGTGGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| 3UTR-3UTR CAA 90 bp | GGCATGACTGACCTACTTAAAGTGTTATTTACCTTCCCCAAGAAGATTAAAAAGAGGAAGCATGGAAGCTaGGGAATCCAAAATCAAAAA | + |
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Preference number: 3 (lower is better) Translates to: GMTDLLKVLFTFPKKIKKRKHGS*GIQNQK Trigger: TTTTTGATTTTGGATTCCCAAGCTTCCATGCTTCCT...CTTTTTAATCTTCTTGGGGAAGGTAAATAACACTTTAAGTAGGTCAGTCATGCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000031841.9 ENSMUST00000203820.3 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CAATCCTCTGTAAAGGCAAAGAAGAACCACAAAGCAGAACCCGGGCTCCCTTTCCTCCCAAGCAAGTGTTaGGATCTGGGTTTGCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: QSSVKAKKNHKAEPGLPFLPSKC*DLGLPC Trigger: GCAGGGCAAACCCAGATCCCAACACTTGCTTGGGAG...GAAAGGGAGCCCGGGTTCTGCTTTGTGGTTCTTCTTTGCCTTTACAGAGGATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CAATCCTCTGTAAAGGCAAAGAAGAACCACAAAGCAGAACCCGGGCTCCCTTTCACCACCGCTGTGAGTTaGTCTGCCCATGTAAATGCC | + |
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Preference number: 4 (lower is better) Translates to: QSSVKAKKNHKAEPGLPFTTAVS*SAHVNA Trigger: GGCATTTACATGGGCAGACCAACTCACAGCGGTGGT...GAAAGGGAGCCCGGGTTCTGCTTTGTGGTTCTTCTTTGCCTTTACAGAGGATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| 3UTR CAA 72 bp | GTCCTCGGGCACAATCACTCCAGTATCAATAGCGTCTaGGACTATAGGAACGGGATCTCGATCGTGACCTGT | + |
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Preference number: 4 (lower is better) Translates to: VLGHNHSSINSV*DYRNGISIVTC Trigger: ACAGGTCACGATCGAGATCCCGTTCCTATAGTCCAAGACGCTATTGATACTGGAGTGATTGTGCCCGAGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203820.3 |
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| CDS-3UTR TCA 90 bp | CAATCCTCTGTAAAGGCAAAGAAGAACCACAAAGCAGAACCCGGGCTCCCTTTCAAAAGCAAATCCACGTaGCCTCCCAGTTCGCTGATC | + |
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Preference number: 4 (lower is better) Translates to: QSSVKAKKNHKAEPGLPFKSKST*PPSSLI Trigger: GATCAGCGAACTGGGAGGTCACGTGGATTTGCTTTT...GAAAGGGAGCCCGGGTTCTGCTTTGTGGTTCTTCTTTGCCTTTACAGAGGATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | AGAACCCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTCCCAAGCAAGTGTTaGGATCTGGGTTTGCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: RTRAPFHSGCSLLKRQLHLPSKC*DLGLPC Trigger: GCAGGGCAAACCCAGATCCCAACACTTGCTTGGGAG...GTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGGGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR GCA 90 bp | CTGCTCCATGCCACTCCAGACAAAGCTGGCATGACTGACCTACTTAAAGTGTTACAGCTCCATCCCATTTaGTCTCTCCATAGCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LLHATPDKAGMTDLLKVLQLHPI*SLHSLL Trigger: AAGGAGGCTATGGAGAGAGCAAATGGGATGGAGCTG...TAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATGGAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR GCA 90 bp | AGAACCCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCGCTGTGAGTTGGTCTaGCCATGTAAATGCCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: RTRAPFHSGCSLLKRQLHRCELV*PCKCLV Trigger: CACCAGGCATTTACATGGGCAGACCAACTCACAGCG...GTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGGGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | AGAACCCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACGCAAGTGTTGGGATCTaGGTTTGCCCTGCTTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: RTRAPFHSGCSLLKRQLHASVGI*VCPASS Trigger: ACTGGAAGCAGGGCAAACCCAGATCCCAACACTTGC...GTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGGGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCGCCCATGTAAATGCCTaGTGTGGGTGTGTGCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: QVVWFWFKGLGSMEAWESAHVNA*CGCVRS Trigger: AGAGCGCACACACCCACACCAGGCATTTACATGGGC...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR TCA 90 bp | CCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGTTGGAGATTTTGACTaGGAGCGAGACTCTCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: PGSLSLRMFTTEKTITPLVGDFD*ERDSLP Trigger: GGGCAGAGAGTCTCGCTCTCAGTCAAAATCTCCAAC...TAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR TCA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCCGAGATCGTCTCCTATaGGAGTGTGACCTGGATCGA | + |
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Preference number: 4 (lower is better) Translates to: QVVWFWFKGLGSMEAWESRDRLL*ECDLDR Trigger: TCGATCCAGGTCACACTCTCATAGGAGACGATCTCG...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CTGCTCCATGCCACTCCAGACAAAGCTGGCATGACTGACCTACTTAAAGTGTTAGGGATTCAGAATGTTTaGACACCCGTGATGGACTAC | + |
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Preference number: 4 (lower is better) Translates to: LLHATPDKAGMTDLLKVLGIQNV*TPVMDY Trigger: GTAGTCCATCACGGGTGTCCAAACATTCTGAATCCC...TAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATGGAGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CAATCCTCTGTAAAGGCAAAGAAGAACCACAAAGCAGAACCCGGGCTCCCTTTCTATGAGAGTGTGACCTaGATCGAGTGTAGCGTCTAT | + |
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Preference number: 4 (lower is better) Translates to: QSSVKAKKNHKAEPGLPFYESVT*IECSVY Trigger: ATAGACGCTACACTCGATCCAGGTCACACTCTCATA...GAAAGGGAGCCCGGGTTCTGCTTTGTGGTTCTTCTTTGCCTTTACAGAGGATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CATGCCACTCCAGACAAAGCTGGCATGACTGACCTACTTAAAGTGTTATTTACCGCAAGTGTTGGGATCTaGGTTTGCCCTGCTTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: HATPDKAGMTDLLKVLFTASVGI*VCPASS Trigger: ACTGGAAGCAGGGCAAACCCAGATCCCAACACTTGC...GGTAAATAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CCGGGCTCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTATGTAAATGCCTGGTGTaGGTGTGTGCGCTCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PGSLSLRMFTTEKTITPLCKCLV*VCALSW Trigger: CCAAGAGAGCGCACACACCCACACCAGGCATTTACA...TAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGAGCCCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR GCA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCCAGCTCCATCCCATTTaGTCTCTCCATAGCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: QVVWFWFKGLGSMEAWESQLHPI*SLHSLL Trigger: AAGGAGGCTATGGAGAGAGCAAATGGGATGGAGCTG...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CCCCACATGTATTTTAGGATCCTATACAATAACCCATGTAACCAATGTCCCAATGCCCATGTAAATGCCTaGTGTGGGTGTGTGCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: PHMYFRILYNNPCNQCPNAHVNA*CGCVRS Trigger: AGAGCGCACACACCCACACCAGGCATTTACATGGGC...ATTGGGACATTGGTTACATGGGTTATTGTATAGGATCCTAAAATACATGTGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR TCA 90 bp | CCCCACATGTATTTTAGGATCCTATACAATAACCCATGTAACCAATGTCCCAATTCTCCTATGAGAGTGTaGCCTGGATCGAGTGTAGCG | + |
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Preference number: 4 (lower is better) Translates to: PHMYFRILYNNPCNQCPNSPMRV*PGSSVA Trigger: CGCTACACTCGATCCAGGTCACACTCTCATAGGAGA...ATTGGGACATTGGTTACATGGGTTATTGTATAGGATCCTAAAATACATGTGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCTCCTTGACCTTGACCTaGACTTTGATCTTGATCGAG | + |
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Preference number: 4 (lower is better) Translates to: QVVWFWFKGLGSMEAWESSLTLT*TLILIE Trigger: CTCGATCAAGATCAAAGTCCAGGTCAAGGTCAAGGA...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR TCA 90 bp | TCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGAGTATGTTGGAGATTTTGACTaGGAGCGAGACTCTCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: SLSLRMFTTEKTITPLEYVGDFD*ERDSLP Trigger: GGGCAGAGAGTCTCGCTCTCAGTCAAAATCTCCAAC...ATACTCTAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR TCA 90 bp | TCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGAGTATTCTCCTATGAGAGTGTaGCCTGGATCGAGTGTAGCG | + |
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Preference number: 4 (lower is better) Translates to: SLSLRMFTTEKTITPLEYSPMRV*PGSSVA Trigger: CGCTACACTCGATCCAGGTCACACTCTCATAGGAGA...ATACTCTAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR TCA 90 bp | CCCCACATGTATTTTAGGATCCTATACAATAACCCATGTAACCAATGTCCCAATAAAAGCAAATCCACGTaGCCTCCCAGTTCGCTGATC | + |
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Preference number: 4 (lower is better) Translates to: PHMYFRILYNNPCNQCPNKSKST*PPSSLI Trigger: GATCAGCGAACTGGGAGGTCACGTGGATTTGCTTTT...ATTGGGACATTGGTTACATGGGTTATTGTATAGGATCCTAAAATACATGTGGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR GCA 90 bp | GGCATGACTGACCTACTTAAAGTGTTATTTACCTTCCCCAAGAAGATTAAAAAGCCTGGTGTGGGTGTGTaGGCTCTCTTGGTGATAGAA | + |
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Preference number: 4 (lower is better) Translates to: GMTDLLKVLFTFPKKIKKPGVGV*ALLVIE Trigger: TTCTATCACCAAGAGAGCGCACACACCCACACCAGG...CTTTTTAATCTTCTTGGGGAAGGTAAATAACACTTTAAGTAGGTCAGTCATGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR GCA 90 bp | GGCATGACTGACCTACTTAAAGTGTTATTTACCTTCCCCAAGAAGATTAAAAAGCGCTGTGAGTTGGTCTaGCCATGTAAATGCCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GMTDLLKVLFTFPKKIKKRCELV*PCKCLV Trigger: CACCAGGCATTTACATGGGCAGACCAACTCACAGCG...CTTTTTAATCTTCTTGGGGAAGGTAAATAACACTTTAAGTAGGTCAGTCATGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | ACAGCAACACAACTGGTCAGGCAGAGATTAAATAAACCAGGTTGTTTGGTTTTGGGGATTCAGAATGTTTaGACACCCGTGATGGACTAC | + |
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Preference number: 4 (lower is better) Translates to: TATQLVRQRLNKPGCLVLGIQNV*TPVMDY Trigger: GTAGTCCATCACGGGTGTCCAAACATTCTGAATCCC...CAAAACCAAACAACCTGGTTTATTTAATCTCTGCCTGACCAGTTGTGTTGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | TCCCTTTCACTCAGGATGTTCACTACTGAAAAGACAATTACACCTTTAGAGTATTGTAAATGCCTGGTGTaGGTGTGTGCGCTCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SLSLRMFTTEKTITPLEYCKCLV*VCALSW Trigger: CCAAGAGAGCGCACACACCCACACCAGGCATTTACA...ATACTCTAAAGGTGTAATTGTCTTTTCAGTAGTGAACATCCTGAGTGAAAGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | GGCATGACTGACCTACTTAAAGTGTTATTTACCTTCCCCAAGAAGATTAAAAAGACCACCGCTGTGAGTTaGTCTGCCCATGTAAATGCC | + |
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Preference number: 4 (lower is better) Translates to: GMTDLLKVLFTFPKKIKKTTAVS*SAHVNA Trigger: GGCATTTACATGGGCAGACCAACTCACAGCGGTGGT...CTTTTTAATCTTCTTGGGGAAGGTAAATAACACTTTAAGTAGGTCAGTCATGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CCA 90 bp | ACAGCAACACAACTGGTCAGGCAGAGATTAAATAAACCAGGTTGTTTGGTTTTGTCCTTGACCTTGACCTaGACTTTGATCTTGATCGAG | + |
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Preference number: 4 (lower is better) Translates to: TATQLVRQRLNKPGCLVLSLTLT*TLILIE Trigger: CTCGATCAAGATCAAAGTCCAGGTCAAGGTCAAGGA...CAAAACCAAACAACCTGGTTTATTTAATCTCTGCCTGACCAGTTGTGTTGCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CAA 90 bp | CAATCCTCTGTAAAGGCAAAGAAGAACCACAAAGCAGAACCCGGGCTCCCTTTCCACCACCGCTGTGAGTaGGTCTGCCCATGTAAATGC | + |
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Preference number: 5 (lower is better) Translates to: QSSVKAKKNHKAEPGLPFHHRCE*VCPCKC Trigger: GCATTTACATGGGCAGACCAACTCACAGCGGTGGTG...GAAAGGGAGCCCGGGTTCTGCTTTGTGGTTCTTCTTTGCCTTTACAGAGGATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CAA 90 bp | CTGCTCCATGCCACTCCAGACAAAGCTGGCATGACTGACCTACTTAAAGTGTTATGTTGGGATCTGGGTTaGCCCTGCTTCCAGTATGCC | + |
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Preference number: 5 (lower is better) Translates to: LLHATPDKAGMTDLLKVLCWDLG*PCFQYA Trigger: GGCATACTGGAAGCAGGGCAAACCCAGATCCCAACA...TAACACTTTAAGTAGGTCAGTCATGCCAGCTTTGTCTGGAGTGGCATGGAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CAA 90 bp | ACAGCAACACAACTGGTCAGGCAGAGATTAAATAAACCAGGTTGTTTGGTTTTGCACCACCGCTGTGAGTaGGTCTGCCCATGTAAATGC | + |
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Preference number: 5 (lower is better) Translates to: TATQLVRQRLNKPGCLVLHHRCE*VCPCKC Trigger: GCATTTACATGGGCAGACCAACTCACAGCGGTGGTG...CAAAACCAAACAACCTGGTTTATTTAATCTCTGCCTGACCAGTTGTGTTGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CAA 90 bp | CAGGTTGTTTGGTTTTGGTTTAAAGGACTAGGAAGCATGGAAGCTTGGGAATCCACCTTGACCTGGACTTaGATCTTGATCGAGAATGGG | + |
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Preference number: 5 (lower is better) Translates to: QVVWFWFKGLGSMEAWESTLTWT*ILIENG Trigger: CCCATTCTCGATCAAGATCAAAGTCCAGGTCAAGGT...GGATTCCCAAGCTTCCATGCTTCCTAGTCCTTTAAACCAAAACCAAACAACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CAA 90 bp | CCCCACATGTATTTTAGGATCCTATACAATAACCCATGTAACCAATGTCCCAATACTCCCAAGCAAGTGTaGGGATCTGGGTTTGCCCTG | + |
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Preference number: 5 (lower is better) Translates to: PHMYFRILYNNPCNQCPNTPKQV*GSGFAL Trigger: CAGGGCAAACCCAGATCCCAACACTTGCTTGGGAGT...ATTGGGACATTGGTTACATGGGTTATTGTATAGGATCCTAAAATACATGTGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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| CDS-3UTR CAA 90 bp | ACAGCAACACAACTGGTCAGGCAGAGATTAAATAAACCAGGTTGTTTGGTTTTGACCTTGACCTGGACTTaGATCTTGATCGAGAATGGG | + |
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Preference number: 5 (lower is better) Translates to: TATQLVRQRLNKPGCLVLTLTWT*ILIENG Trigger: CCCATTCTCGATCAAGATCAAAGTCCAGGTCAAGGT...CAAAACCAAACAACCTGGTTTATTTAATCTCTGCCTGACCAGTTGTGTTGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031841.9 ENSMUST00000204189.3 |
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