Pregenerated sensors for TPTE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031481Ensembl transcript IDs: ENSMUST00000077194.2, ENSMUST00000211497.2, ENSMUST00000211747.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTTCGATACTTCACTCAAGGAATTCAGTTCATACAGGGTTGTGCTaGTCGAAGCTCCCCCAGGGTCGTATACTGACGAATCATTTGTAT | + |
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Preference number: 1 (lower is better) Translates to: LSILHSRNSVHTGLC*SKLPQGRILTNHLY Trigger: ATACAAATGATTCGTCAGTATACGACCCTGGGGGAGCTTCGAGCAGCACAACCCTGTATGAACTGAATTCCTTGAGTGAAGTATCGAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR GCA 90 bp | TTTCTTTCGATACTTCACTCAAGGAATTCAGTTCATACAGGGTTGTaGTGCTCGAAGCTCCCCCAGGGTCGTATACTGACGAATCATTTG | + |
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Preference number: 1 (lower is better) Translates to: FLSILHSRNSVHTGL*CSKLPQGRILTNHL Trigger: CAAATGATTCGTCAGTATACGACCCTGGGGGAGCTTCGAGCAGCACAACCCTGTATGAACTGAATTCCTTGAGTGAAGTATCGAAAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR GCA 90 bp | AACTGCCAGTCTTGGGATATCTCTGAGAAAGTGTTTGTCATAAAGTaGATAAATGACAGCCACAACCACAGTCACACCGATGACCACAGC | + |
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Preference number: 1 (lower is better) Translates to: NCQSWDISEKVFVIK*INDSHNHSHTDDHS Trigger: GCTGTGGTCATCGGTGTGACTGTGGTTGTGGCTGTCATTTATGCACTTTATGACAAACACTTTCTCAGAGATATCCCAAGACTGGCAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR GCA 90 bp | AAATCAGATAAGGAGAGAGTGTTGGTGGACATGGACGTCTGCGTTTaGAGTGTACTTGGGATTTTGAGTTCGCTGGTAGCTTCTTTATCA | + |
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Preference number: 1 (lower is better) Translates to: KSDKERVLVDMDVCV*SVLGILSSLVASLS Trigger: TGATAAAGAAGCTACCAGCGAACTCAAAATCCCAAGTACACTGCAAACGCAGACGTCCATGTCCACCAACACTCTCTCCTTATCTGATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR GCA 90 bp | CAGTACGTTCATCATCGTCGTACAACTTGGACATCTGGTTTAACTTaGATTTGTTCATTTGCTCTTCCTGGTAATCTGATGATAAATCAG | + |
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Preference number: 1 (lower is better) Translates to: QYVHHRRTTWTSGLT*ICSFALPGNLMINQ Trigger: CTGATTTATCATCAGATTACCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATGAACGTACTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR CCA 90 bp | AGTATGACTTTTGAATATCAGTACGTTCATCATCGTCGTACAACTTaGACATCTGGTTTAACTTGCATTTGTTCATTTGCTCTTCCTGGT | + |
|
Preference number: 1 (lower is better) Translates to: SMTFEYQYVHHRRTT*TSGLTCICSFALPG Trigger: ACCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATGAACGTACTGATATTCAAAAGTCATACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CCA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTAGGAGAGAGTGTTGGTaGACATGGACGTCTGCGTTT | + |
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Preference number: 2 (lower is better) Translates to: HPSCSVACYPIPASWSAFRRECW*TWTSAF Trigger: AAACGCAGACGTCCATGTCCACCAACACTCTCTCCT...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CCA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTATAAGGAGAGAGTGTTaGTGGACATGGACGTCTGCG | + |
|
Preference number: 2 (lower is better) Translates to: HPSCSVACYPIPASWSAFIRREC*WTWTSA Trigger: CGCAGACGTCCATGTCCACCAACACTCTCTCCTTAT...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CCA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTCGTTTGCAGTGTACTTaGGATTTTGAGTTCGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: HPSCSVACYPIPASWSAFRLQCT*DFEFAG Trigger: ACCAGCGAACTCAAAATCCCAAGTACACTGCAAACG...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR TCA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTTATTTCATCTGGATATaGCAAACTGCTCCCGTTAGT | + |
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Preference number: 2 (lower is better) Translates to: HPSCSVACYPIPASWSAFYFIWI*QTAPVS Trigger: ACTAACGGGAGCAGTTTGTCATATCCAGATGAAATA...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR TCA 90 bp | AGAAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTATATGCTTTTGTACTaGTGGGGTCCGCATAACTTG | + |
|
Preference number: 2 (lower is better) Translates to: RRGAALTQQLVLTKIHLYYMLLY*WGPHNL Trigger: CAAGTTATGCGGACCCCATCAGTACAAAAGCATATA...GTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR TCA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTAAATTCCAAATATTCTaGAGGCAACCGAGGACACAA | + |
|
Preference number: 2 (lower is better) Translates to: HPSCSVACYPIPASWSAFKFQIF*RQPRTQ Trigger: TTGTGTCCTCGGTTGCCTTCAGAATATTTGGAATTT...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR GCA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTCGAATCATTTGTATATaGTTTTGTACTGATGGGGTC | + |
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Preference number: 2 (lower is better) Translates to: HPSCSVACYPIPASWSAFRIICI*FCTDGV Trigger: GACCCCATCAGTACAAAAGCATATACAAATGATTCG...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR TCA 90 bp | GTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTCGAGTTGTCTCTTTTGTCTTGGGATATCTCTaGGAAAGTGTTTGTCATAAA | + |
|
Preference number: 2 (lower is better) Translates to: VACYPIPASWSAFRVVSFVLGYL*ESVCHK Trigger: TTTATGACAAACACTTTCTCAGAGATATCCCAAGAC...AAAAGAGACAACTCGAAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CCA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTTACAACTTGGACATCTaGTTTAACTTGCATTTGTTC | + |
|
Preference number: 2 (lower is better) Translates to: HPSCSVACYPIPASWSAFYNLDI*FNLHLF Trigger: GAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTA...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CCA 90 bp | GTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTCGAGTTGTCTCTTTTCATAACTATGTAGCATaGATCTGGAAGAACATGATT | + |
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Preference number: 2 (lower is better) Translates to: VACYPIPASWSAFRVVSFHNYVA*IWKNMI Trigger: AATCATGTTCTTCCAGATCCATGCTACATAGTTATG...AAAAGAGACAACTCGAAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR TCA 90 bp | CGTCGTACAACTTGGACATCTGGTTTAACTTGCATTTGTTCATTTGCTCTTCCTGTCCGCATAACTTGCTaGTTTTATTTCATCTGGATA | + |
|
Preference number: 2 (lower is better) Translates to: RRTTWTSGLTCICSFALPVRITC*FYFIWI Trigger: TATCCAGATGAAATAAAATCAGCAAGTTATGCGGAC...AGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTACGACG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR GCA 90 bp | ACATCTGGTTTAACTTGCATTTGTTCATTTGCTCTTCCTGGTAATCTGATGATATTTATGTTCCCAAAATaGATTATAACTCAGACCGGT | + |
|
Preference number: 2 (lower is better) Translates to: TSGLTCICSFALPGNLMIFMFPK*IITQTG Trigger: ACCGGTCTGAGTTATAATGCATTTTGGGAACATAAA...TATCATCAGATTACCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CAA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGTCAGTTCATACAGGGTaGTGCTGCTCGAAGCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: KGSGTYSTASSHQNPPLLSVHTG*CCSKLP Trigger: GGGGAGCTTCGAGCAGCACAACCCTGTATGAACTGA...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR TCA 72 bp | TTGGGTGCTTGGTATCCAGGAACCGCACAACCTCCTTaGTTGGATTTCTGTAGAAGGACTCCCTTCCAGACG | + |
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Preference number: 3 (lower is better) Translates to: LGAWYPGTAQPP*LDFCRRTPFQT Trigger: CGTCTGGAAGGGAGTCCTTCTACAGAAATCCAATCAAGGAGGTTGTGCGGTTCCTGGATACCAAGCACCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR GCA 72 bp | CTTCACTCAAGGAATTCAGTTCATACAGGGTTGTGCTaGTCGAAGCTCCCCCAGGGTCGTATACTGACGAAT | + |
|
Preference number: 3 (lower is better) Translates to: LHSRNSVHTGLC*SKLPQGRILTN Trigger: ATTCGTCAGTATACGACCCTGGGGGAGCTTCGAGCAGCACAACCCTGTATGAACTGAATTCCTTGAGTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR GCA 72 bp | ATACTTCACTCAAGGAATTCAGTTCATACAGGGTTGTaGTGCTCGAAGCTCCCCCAGGGTCGTATACTGACG | + |
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Preference number: 3 (lower is better) Translates to: ILHSRNSVHTGL*CSKLPQGRILT Trigger: CGTCAGTATACGACCCTGGGGGAGCTTCGAGCAGCACAACCCTGTATGAACTGAATTCCTTGAGTGAAGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR CCA 72 bp | GTTGGTGGACATGGACGTCTGCGTTTGCAGTGTACTTaGGATTTTGAGTTCGCTGGTAGCTTCTTTATCACG | + |
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Preference number: 3 (lower is better) Translates to: VGGHGRLRLQCT*DFEFAGSFFIT Trigger: CGTGATAAAGAAGCTACCAGCGAACTCAAAATCCCAAGTACACTGCAAACGCAGACGTCCATGTCCACCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CAA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTTGGTTTAACTTGCATTaGTTCATTTGCTCTTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: HPSCSVACYPIPASWSAFWFNLH*FICSSW Trigger: CCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCA...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CAA 90 bp | CATCCTTCTTGTAGCGTCGCTTGTTACCCGATACCAGCTTCCTGGTCAGCCTTTCTTTTGATGAGCCAGTaGCAGAATCCTTATCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: HPSCSVACYPIPASWSAFLLMSQ*QNPYQN Trigger: ATTCTGATAAGGATTCTGCAACTGGCTCATCAAAAG...AAAGGCTGACCAGGAAGCTGGTATCGGGTAACAAGCGACGCTACAAGAAGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR CCA 72 bp | AATCTGATGATAAATCAGATAAGGAGAGAGTGTTGGTaGACATGGACGTCTGCGTTTGCAGTGTACTTGGGA | + |
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Preference number: 3 (lower is better) Translates to: NLMINQIRRECW*TWTSAFAVYLG Trigger: TCCCAAGTACACTGCAAACGCAGACGTCCATGTCCACCAACACTCTCTCCTTATCTGATTTATCATCAGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR CCA 72 bp | GGTAATCTGATGATAAATCAGATAAGGAGAGAGTGTTaGTGGACATGGACGTCTGCGTTTGCAGTGTACTTG | + |
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Preference number: 3 (lower is better) Translates to: GNLMINQIRREC*WTWTSAFAVYL Trigger: CAAGTACACTGCAAACGCAGACGTCCATGTCCACCAACACTCTCTCCTTATCTGATTTATCATCAGATTACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR CCA 72 bp | TCAGTACGTTCATCATCGTCGTACAACTTGGACATCTaGTTTAACTTGCATTTGTTCATTTGCTCTTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: SVRSSSSYNLDI*FNLHLFICSSW Trigger: CCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATGAACGTACTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR GCA 72 bp | CATCATCGTCGTACAACTTGGACATCTGGTTTAACTTaGATTTGTTCATTTGCTCTTCCTGGTAATCTGATG | + |
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Preference number: 3 (lower is better) Translates to: HHRRTTWTSGLT*ICSFALPGNLM Trigger: CATCAGATTACCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR CCA 72 bp | GTAGCTTCTTTATCACGTAGTAAAGCAGATTCTCCCTaGGTAATGATTTCTTTCGATACTTCACTCAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: VASLSRSKADSP*VMISFDTSLKE Trigger: TTCCTTGAGTGAAGTATCGAAAGAAATCATTACCCAGGGAGAATCTGCTTTACTACGTGATAAAGAAGCTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR-3UTR CAA 90 bp | ACATCTGGTTTAACTTGCATTTGTTCATTTGCTCTTCCTGGTAATCTGATGATATGGGGTCCGCATAACTaGCTGATTTTATTTCATCTG | + |
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Preference number: 3 (lower is better) Translates to: TSGLTCICSFALPGNLMIWGPHN*LILFHL Trigger: CAGATGAAATAAAATCAGCAAGTTATGCGGACCCCA...TATCATCAGATTACCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR TCA 72 bp | AAGGATGCGCACAAATTTCTTAACCACATTCCAGTATaGCTTTTGAATATCAGTACGTTCATCATCGTCGTA | + |
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Preference number: 3 (lower is better) Translates to: KDAHKFLNHIPV*LLNISTFIIVV Trigger: TACGACGATGATGAACGTACTGATATTCAAAAGTCATACTGGAATGTGGTTAAGAAATTTGTGCGCATCCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| 3UTR CCA 72 bp | TTTGAATATCAGTACGTTCATCATCGTCGTACAACTTaGACATCTGGTTTAACTTGCATTTGTTCATTTGCT | + |
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Preference number: 3 (lower is better) Translates to: FEYQYVHHRRTT*TSGLTCICSFA Trigger: AGCAAATGAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATGAACGTACTGATATTCAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| CDS-3UTR CCA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGCCGATACCAGCTTCCTaGTCAGCCTTTCGAGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: KGSGTYSTASSHQNPPLLPIPAS*SAFRVV Trigger: GACAACTCGAAAGGCTGACCAGGAAGCTGGTATCGG...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR GCA 90 bp | AGAAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACGGAACTTCGAGCTGTTaGTTTTATCTGTCCGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: RRGAALTQQLVLTKIHLYGTSSC*FYLSAA Trigger: AGCGGCGGACAGATAAAAGCAACAGCTCGAAGTTCC...GTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGAGGAGAGAGTGTTGGTaGACATGGACGTCTGCGTTT | + |
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Preference number: 4 (lower is better) Translates to: KGSGTYSTASSHQNPPLLRRECW*TWTSAF Trigger: AAACGCAGACGTCCATGTCCACCAACACTCTCTCCT...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| 3UTR CAA 72 bp | TCGATACTTCACTCAAGGAATTCAGTTCATACAGGGTaGTGCTGCTCGAAGCTCCCCCAGGGTCGTATACTG | + |
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Preference number: 4 (lower is better) Translates to: SILHSRNSVHTG*CCSKLPQGRIL Trigger: CAGTATACGACCCTGGGGGAGCTTCGAGCAGCACAACCCTGTATGAACTGAATTCCTTGAGTGAAGTATCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| CDS-3UTR CCA 90 bp | AGAAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACGGGGTCTCTATTCCTTaGAACTTCGAGCTGTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: RRGAALTQQLVLTKIHLYGVSIP*NFELLL Trigger: AAGCAACAGCTCGAAGTTCCAAGGAATAGAGACCCC...GTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | AGAAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACCGTTTGCAGTGTACTTaGGATTTTGAGTTCGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: RRGAALTQQLVLTKIHLYRLQCT*DFEFAG Trigger: ACCAGCGAACTCAAAATCCCAAGTACACTGCAAACG...GTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGCATCGTCGTACAACTTaGACATCTGGTTTAACTTGC | + |
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Preference number: 4 (lower is better) Translates to: KGSGTYSTASSHQNPPLLHRRTT*TSGLTC Trigger: GCAAGTTAAACCAGATGTCCAAGTTGTACGACGATG...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| 3UTR CAA 72 bp | GTTACCCGATACCAGCTTCCTGGTCAGCCTTTCGAGTaGTCTCTTTTGATGAGCCAGTTGCAGAATCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: VTRYQLPGQPFE*SLLMSQLQNPY Trigger: ATAAGGATTCTGCAACTGGCTCATCAAAAGAGACAACTCGAAAGGCTGACCAGGAAGCTGGTATCGGGTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| CDS-3UTR TCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACACCACAGTCACACCGATaGCCACAGCGTCTAGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETPQSHR*PQRLGC Trigger: ACACCCTAGACGCTGTGGTCATCGGTGTGACTGTGG...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR TCA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGGTCTTGGGATATCTCTaGGAAAGTGTTTGTCATAAA | + |
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Preference number: 4 (lower is better) Translates to: KGSGTYSTASSHQNPPLLVLGYL*ESVCHK Trigger: TTTATGACAAACACTTTCTCAGAGATATCCCAAGAC...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR GCA 90 bp | AGAAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACCGAATCATTTGTATATaGTTTTGTACTGATGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: RRGAALTQQLVLTKIHLYRIICI*FCTDGV Trigger: GACCCCATCAGTACAAAAGCATATACAAATGATTCG...GTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR GCA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGCATAAGCTCTCTCACTaGATAGATTGTAGACTTGAT | + |
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Preference number: 4 (lower is better) Translates to: KGSGTYSTASSHQNPPLLHKLSH*IDCRLD Trigger: ATCAAGTCTACAATCTATGCAGTGAGAGAGCTTATG...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | AGAAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACATCCAGAGATACAAATaGCTCTTCTTTTCTCCATAC | + |
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Preference number: 4 (lower is better) Translates to: RRGAALTQQLVLTKIHLYIQRYK*LFFSPY Trigger: GTATGGAGAAAAGAAGAGCCATTTGTATCTCTGGAT...GTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000211497.2 ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGACATTTCCTCAAGAGTaGGGACATTATGATCATCAA | + |
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Preference number: 4 (lower is better) Translates to: KGSGTYSTASSHQNPPLLTFPQE*GHYDHQ Trigger: TTGATGATCATAATGTCCCCACTCTTGAGGAAATGT...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAATAAGGAGAGAGTGTTaGTGGACATGGACGTCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETIRREC*WTWTSA Trigger: CGCAGACGTCCATGTCCACCAACACTCTCTCCTTAT...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAAGTGGTTTGGGTGCTTaGTATCCAGGAACCGCACAA | + |
|
Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETSGLGA*YPGTAQ Trigger: TTGTGCGGTTCCTGGATACCAAGCACCCAAACCACT...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR TCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAACCGCACAACCTCCTTaGTTGGATTTCTGTAGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETTAQPP*LDFCRR Trigger: CCTTCTACAGAAATCCAATCAAGGAGGTTGTGCGGT...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR TCA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGTCTCCTGCCACATTATaGTTTGTACTTCCAGGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVSPATL*FVLPGH Trigger: GTGACCTGGAAGTACAAATCATAATGTGGCAGGAGA...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGACTTGATAGTGGTTTaGGTGCTTGGTATCCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETDLIVV*VLGIQE Trigger: TTCCTGGATACCAAGCACCCAAACCACTATCAAGTC...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR TCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACATATATGCTTTTGTACTaGTGGGGTCCGCATAACTTG | + |
|
Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETYMLLY*WGPHNL Trigger: CAAGTTATGCGGACCCCATCAGTACAAAAGCATATA...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR TCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACACATAAAGTGCATAAATaGCAGCCACAACCACAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETHKVHK*QPQPQS Trigger: TGACTGTGGTTGTGGCTGTCATTTATGCACTTTATG...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR GCA 90 bp | CGTCGTACAACTTGGACATCTGGTTTAACTTGCATTTGTTCATTTGCTCTTCCTCATCTTGTAAATATTTaGAGGCATGTCATACCCATA | + |
|
Preference number: 4 (lower is better) Translates to: RRTTWTSGLTCICSFALPHLVNI*RHVIPI Trigger: TATGGGTATGACATGCCTGCAAATATTTACAAGATG...AGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTACGACG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| CDS-3UTR CCA 90 bp | ACATCTGGTTTAACTTGCATTTGTTCATTTGCTCTTCCTGGTAATCTGATGATACATCATCCGTTTTTCTaGAGGGCTGAGAATACATCT | + |
|
Preference number: 4 (lower is better) Translates to: TSGLTCICSFALPGNLMIHHPFF*RAENTS Trigger: AGATGTATTCTCAGCCCTCCAGAAAAACGGATGATG...TATCATCAGATTACCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCAGATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211497.2 |
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| CDS-3UTR CCA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGCATCATCCGTTTTTCTaGAGGGCTGAGAATACATCT | + |
|
Preference number: 4 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVHHPFF*RAENTS Trigger: AGATGTATTCTCAGCCCTCCAGAAAAACGGATGATG...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR TCA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGTATTTCATCTGGATATaGCAAACTGCTCCCGTTAGT | + |
|
Preference number: 4 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVYFIWI*QTAPVS Trigger: ACTAACGGGAGCAGTTTGTCATATCCAGATGAAATA...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR TCA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGAAATTCCAAATATTCTaGAGGCAACCGAGGACACAA | + |
|
Preference number: 4 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVKFQIF*RQPRTQ Trigger: TTGTGTCCTCGGTTGCCTTCAGAATATTTGGAATTT...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR TCA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGGTCCGCATAACTTGCTaGTTTTATTTCATCTGGATA | + |
|
Preference number: 4 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVVRITC*FYFIWI Trigger: TATCCAGATGAAATAAAATCAGCAAGTTATGCGGAC...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR GCA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGGTGTTTGTCATAAAGTaGATAAATGACAGCCACAAC | + |
|
Preference number: 4 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVVFVIK*INDSHN Trigger: GTTGTGGCTGTCATTTATGCACTTTATGACAAACAC...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAATCCAGAGATACAAATaGCTCTTCTTTTCTCCATAC | + |
|
Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETIQRYK*LFFSPY Trigger: GTATGGAGAAAAGAAGAGCCATTTGTATCTCTGGAT...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGAAAGCAGATTCTCCCTaGGTAATGATTTCTTTCGAT | + |
|
Preference number: 4 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVKADSP*VMISFD Trigger: ATCGAAAGAAATCATTACCCAGGGAGAATCTGCTTT...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR GCA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACACATCTTGTAAATATTTaGAGGCATGTCATACCCATA | + |
|
Preference number: 4 (lower is better) Translates to: FQGHEISYFLPTAFHSETHLVNI*RHVIPI Trigger: TATGGGTATGACATGCCTGCAAATATTTACAAGATG...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CCA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGTACAACTTGGACATCTaGTTTAACTTGCATTTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVYNLDI*FNLHLF Trigger: GAACAAATGCAAGTTAAACCAGATGTCCAAGTTGTA...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CAA 90 bp | AGAAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGGAACTTCGAGCTGTaGCTTTTATCTGTCCGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: RRGAALTQQLVLTKIHLYWNFEL*LLSVRR Trigger: GCGGCGGACAGATAAAAGCAACAGCTCGAAGTTCCA...GTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CAA 90 bp | AGAAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGGGGTCCGCATAACTaGCTGATTTTATTTCATCTG | + |
|
Preference number: 5 (lower is better) Translates to: RRGAALTQQLVLTKIHLYWGPHN*LILFHL Trigger: CAGATGAAATAAAATCAGCAAGTTATGCGGACCCCA...GTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CAA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGTGGTTTAACTTGCATTaGTTCATTTGCTCTTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: KGSGTYSTASSHQNPPLLWFNLH*FICSSW Trigger: CCAGGAAGAGCAAATGAACAAATGCAAGTTAAACCA...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CAA 90 bp | AAGGGGAGCGGCACTTACTCAACAGCTAGTTCTCACCAAAATCCACCTCTACTGCTTTTGATGAGCCAGTaGCAGAATCCTTATCAGAAT | + |
|
Preference number: 5 (lower is better) Translates to: KGSGTYSTASSHQNPPLLLLMSQ*QNPYQN Trigger: ATTCTGATAAGGATTCTGCAACTGGCTCATCAAAAG...CAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS GCA 90 bp | ATCATCCGTTTTTCTGGAGGGCTGAGAATACATCTTGTAAATATTTaGAGGCATGTCATACCCATAGTGTTCCATCCAGAGATACAAATG | + |
|
Preference number: 5 (lower is better) Translates to: IIRFSGGLRIHLVNI*RHVIPIVFHPEIQM Trigger: CATTTGTATCTCTGGATGGAACACTATGGGTATGACATGCCTGCAAATATTTACAAGATGTATTCTCAGCCCTCCAGAAAAACGGATGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077194.2 ENSMUST00000211497.2 ENSMUST00000211747.2 |
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| CDS-3UTR CAA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGAGACTTGATAGTGGTTaGGGTGCTTGGTATCCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVRLDSG*GAWYPG Trigger: TCCTGGATACCAAGCACCCAAACCACTATCAAGTCT...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS CCA 90 bp | TTGAAGCACTCACTGACACCTTTTTATTTGCATCATCCGTTTTTCTaGAGGGCTGAGAATACATCTTGTAAATATTTGCAGGCATGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: LKHSLTPFYLHHPFF*RAENTSCKYLQACH Trigger: ATGACATGCCTGCAAATATTTACAAGATGTATTCTCAGCCCTCCAGAAAAACGGATGATGCAAATAAAAAGGTGTCAGTGAGTGCTTCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000077194.2 ENSMUST00000211747.2 |
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| CDS-3UTR CAA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGATCACGAGTACTTTTTaGGGAGGGAGAGTTAGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVITSTF*GGRVSW Trigger: CCAACTAACTCTCCCTCCCAAAAAAGTACTCGTGAT...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CAA 90 bp | TTTCAGGGTCATGAAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACATTCGAGTTGTCTCTTTaGATGAGCCAGTTGCAGAAT | + |
|
Preference number: 5 (lower is better) Translates to: FQGHEISYFLPTAFHSETFELSL*MSQLQN Trigger: ATTCTGCAACTGGCTCATCAAAAGAGACAACTCGAA...TGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTTCATGACCCTGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS-3UTR CAA 90 bp | AAATATCTTATTTTCTACCTACAGCTTTTCACAGTGAGACAGTATTTCAGGGTGGACATCTGGTTTAACTaGCATTTGTTCATTTGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: KYLIFYLQLFTVRQYFRVDIWFN*HLFICS Trigger: AGAGCAAATGAACAAATGCAAGTTAAACCAGATGTC...CACCCTGAAATACTGTCTCACTGTGAAAAGCTGTAGGTAGAAAATAAGATATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211747.2 |
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| CDS CAA 72 bp | TTTTTCTGGAGGGCTGAGAATACATCTTGTAAATATTaGCAGGCATGTCATACCCATAGTGTTCCATCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: FFWRAENTSCKY*QACHTHSVPSR Trigger: TCTGGATGGAACACTATGGGTATGACATGCCTGCAAATATTTACAAGATGTATTCTCAGCCCTCCAGAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077194.2 ENSMUST00000211497.2 ENSMUST00000211747.2 |
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