Pregenerated sensors for TPSG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033200Ensembl transcript IDs: ENSMUST00000024999.15, ENSMUST00000160377.8, ENSMUST00000160485.8, ENSMUST00000162021.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGGGGGCAAAGCAAAGCTaGATAAACACTAACTTATTT | + |
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Preference number: 2 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGGAKQS*INTNLF Trigger: AAATAAGTTAGTGTTTATTCAGCTTTGCTTTGCCCC...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 41% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS-3UTR GCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGCCTGCCACGGCCATGTaGCTGCTGGGGCAGCATGCC | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGPATAM*LLGQHA Trigger: GGCATGCTGCCCCAGCAGGCACATGGCCGTGGCAGG...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS-3UTR CCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGCGGCCATGTGCCTGCTaGGGCAGCATGCCCTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGRPCAC*GSMPSH Trigger: GTGGGAGGGCATGCTGCCCCAGCAGGCACATGGCCG...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS-3UTR CCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGCACACAGGCTGGACCTaGCTGGAAAGGGCCACCGGG | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGHTGWT*LERATG Trigger: CCCGGTGGCCCTTTCCAGCCAGGTCCAGCCTGTGTG...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 |
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| CDS-3UTR GCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGACCGGGGAGGACAGCTaGACCAGGGCAATGTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGTGEDS*TRAMSP Trigger: TGGGGACATTGCCCTGGTGCAGCTGTCCTCCCCGGT...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 |
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| CDS-3UTR GCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGGCCCAGGGAAGCCCTTaGATTCCTGAGCCCCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGAQGSP*IPEPPA Trigger: AGCAGGGGGCTCAGGAATGCAAGGGCTTCCCTGGGC...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS-3UTR TCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGGCACCCATTCTGGACTaGGCAGGGAGCCTCCACACA | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGAPILD*AGSLHT Trigger: TGTGTGGAGGCTCCCTGCTCAGTCCAGAATGGGTGC...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS-3UTR CCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGCAGGTTCCAGCCACCTaGCAGACTAGTGGCCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGQVPAT*QTSGPP Trigger: TGGAGGGCCACTAGTCTGCCAGGTGGCTGGAACCTG...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS-3UTR TCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGAAGCCCTTGCATTCCTaGGCCCCCTGCTTCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGKPLHS*APCFWD Trigger: ATCCCAGAAGCAGGGGGCTCAGGAATGCAAGGGCTT...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS-3UTR TCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGTCGACTTCCCGAGTTTaGAACCTGGGGATGGCCACA | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGSTSRV*NLGMAT Trigger: TGTGGCCATCCCCAGGTTTCAAACTCGGGAAGTCGA...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS-3UTR TCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGGAGACTTTGGCCTCCTaGAGGTTGTATGGGGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGETLAS*RLYGGF Trigger: GAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTC...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS-3UTR GCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGCCAGAAACAGTAGGATaGCACAGTAGGGCCCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGPETVG*HSRAPE Trigger: CTCTGGGGCCCTACTGTGGCATCCTACTGTTTCTGG...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000024999.15 ENSMUST00000162021.8 |
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| CDS-3UTR CCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGCCCGAGTTTGAAACCTaGGGATGGCCACACCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGPEFET*GWPHPE Trigger: TTCTGGGTGTGGCCATCCCCAGGTTTCAAACTCGGG...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS-3UTR CCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGTTTGAAACCTGGGGATaGCCACACCCAGAAACAGCC | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGFETWG*PHPETA Trigger: GGCTGTTTCTGGGTGTGGCCATCCCCAGGTTTCAAA...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS-3UTR CCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGCATAGCATGTCTGGCTaGATGAGGCTGCCATTGGGA | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGHSMSG*MRLPLG Trigger: TCCCAATGGCAGCCTCATCCAGCCAGACATGCTATG...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS-3UTR CCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGCCACCACAGAGACTTTaGCCTCCTGAAGGTTGTATG | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGPPQRL*PPEGCM Trigger: CATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGG...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS-3UTR CCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGTTTACAGTGGAGAAGTaGGGAGACAGTGTGACCGTA | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGFTVEK*GDSVTV Trigger: TACGGTCACACTGTCTCCCCACTTCTCCACTGTAAA...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS-3UTR GCA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGTATTGTAAGCCTGGCTaGAGGTCTTTACATCCACCA | + |
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Preference number: 4 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGYCKPG*RSLHPP Trigger: TGGTGGATGTAAAGACCTGCAGCCAGGCTTACAATA...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS TCA 90 bp | GGCAGGCATCCCCAGGGCCCCGGGCGCATAGCATGTCTGGCTGGATaGGGCTGCCATTGGGACTATTGTAAGCCTGGCTGCAGGTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: GRHPQGPGRIACLAG*GCHWDYCKPGCRSL Trigger: TAAAGACCTGCAGCCAGGCTTACAATAGTCCCAATGGCAGCCTCATCCAGCCAGACATGCTATGCGCCCGGGGCCCTGGGGATGCCTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000160485.8 ENSMUST00000162021.8 |
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| CDS TCA 90 bp | GAAGAGGGCAGCCAGGAGAGGAGCCCAGGGAAGCCCTTGCATTCCTaGGCCCCCTGCTTCTGGGATGTGGTGGTGGATCCAGTTTACATA | + |
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Preference number: 5 (lower is better) Translates to: EEGSQERSPGKPLHS*APCFWDVVVDPVYI Trigger: TATGTAAACTGGATCCACCACCACATCCCAGAAGCAGGGGGCTCAGGAATGCAAGGGCTTCCCTGGGCTCCTCTCCTGGCTGCCCTCTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS TCA 90 bp | GCCTGGCTGCAGGTCTTTACATCCACCACAGAGACTTTGGCCTCCTaGAGGTTGTATGGGGGCTTCAGAGGCTCAGAAACAGCCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: AWLQVFTSTTETLAS*RLYGGFRGSETARN Trigger: GTTTCTGGCTGTTTCTGAGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGATGTAAAGACCTGCAGCCAGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162021.8 |
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| CDS CCA 90 bp | TATTGTAAGCCTGGCTGCAGGTCTTTACATCCACCACAGAGACTTTaGCCTCCTGAAGGTTGTATGGGGGCTTCAGAGGCTCTCCCTCCC | + |
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Preference number: 5 (lower is better) Translates to: YCKPGCRSLHPPQRL*PPEGCMGASEALPP Trigger: GGGAGGGAGAGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGATGTAAAGACCTGCAGCCAGGCTTACAATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000160485.8 |
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| CDS-3UTR CAA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGGCAGCAGGAAGAGGCTaGGCCAGAAGAGGGCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGAAGRG*ARRGQP Trigger: TGGCTGCCCTCTTCTGGCCAAGCCTCTTCCTGCTGC...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS-3UTR CAA 90 bp | TGCAATAATCTGATGCAGAAAACTTGGCTTCCTAAGTCAAAGCTAAGGGGAGGGTTCGACTTCCCGAGTTaGAAACCTGGGGATGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: CNNLMQKTWLPKSKLRGGFDFPS*KPGDGH Trigger: GTGGCCATCCCCAGGTTTCAAACTCGGGAAGTCGAA...CCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS CCA 72 bp | CTGAGGCCTCTGGGAGGCACACAGGCTGGACCTGGCTaGAAAGGGCCACCGGGGAGGACAGCTGCACCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LRPLGGTQAGPG*KGPPGRTAAPG Trigger: CCCTGGTGCAGCTGTCCTCCCCGGTGGCCCTTTCCAGCCAGGTCCAGCCTGTGTGCCTCCCAGAGGCCTCAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000160485.8 |
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| CDS CCA 72 bp | TCAGCTGAGGCCTCTGGGAGGCACACAGGCTGGACCTaGCTGGAAAGGGCCACCGGGGAGGACAGCTGCACC | + |
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Preference number: 6 (lower is better) Translates to: SAEASGRHTGWT*LERATGEDSCT Trigger: GGTGCAGCTGTCCTCCCCGGTGGCCCTTTCCAGCCAGGTCCAGCCTGTGTGCCTCCCAGAGGCCTCAGCTGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000160485.8 |
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| CDS GCA 72 bp | CCACACACGTGCACCTTGTGCAGACGGAGGCTAGCCTaGCACGGCCATGTGCCTGCTGGGGCAGCATGCCCT | + |
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Preference number: 6 (lower is better) Translates to: PHTCTLCRRRLA*HGHVPAGAACP Trigger: AGGGCATGCTGCCCCAGCAGGCACATGGCCGTGGCAGGCTAGCCTCCGTCTGCACAAGGTGCACGTGTGTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS CCA 72 bp | CAGACGGAGGCTAGCCTGCCACGGCCATGTGCCTGCTaGGGCAGCATGCCCTCCCACGATTCGACTTCCCGA | + |
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Preference number: 6 (lower is better) Translates to: QTEASLPRPCAC*GSMPSHDSTSR Trigger: TCGGGAAGTCGAATCGTGGGAGGGCATGCTGCCCCAGCAGGCACATGGCCGTGGCAGGCTAGCCTCCGTCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS TCA 72 bp | CCCCAGGGCCCCGGGCGCATAGCATGTCTGGCTGGATaGGGCTGCCATTGGGACTATTGTAAGCCTGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: PQGPGRIACLAG*GCHWDYCKPGC Trigger: GCAGCCAGGCTTACAATAGTCCCAATGGCAGCCTCATCCAGCCAGACATGCTATGCGCCCGGGGCCCTGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000160485.8 ENSMUST00000162021.8 |
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| CDS TCA 72 bp | AGCCAGGAGAGGAGCCCAGGGAAGCCCTTGCATTCCTaGGCCCCCTGCTTCTGGGATGTGGTGGTGGATCCA | + |
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Preference number: 6 (lower is better) Translates to: SQERSPGKPLHS*APCFWDVVVDP Trigger: TGGATCCACCACCACATCCCAGAAGCAGGGGGCTCAGGAATGCAAGGGCTTCCCTGGGCTCCTCTCCTGGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000162021.8 |
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| CDS TCA 72 bp | GGCAGCATGCCCTCCCACGATTCGACTTCCCGAGTTTaGAACCTGGGGATGGCCACACCCAGAAACAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: GSMPSHDSTSRV*NLGMATPRNSQ Trigger: CTGGCTGTTTCTGGGTGTGGCCATCCCCAGGTTTCAAACTCGGGAAGTCGAATCGTGGGAGGGCATGCTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS CAA 72 bp | GGGCAGCATGCCCTCCCACGATTCGACTTCCCGAGTTaGAAACCTGGGGATGGCCACACCCAGAAACAGCCA | + |
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Preference number: 6 (lower is better) Translates to: GQHALPRFDFPS*KPGDGHTQKQP Trigger: TGGCTGTTTCTGGGTGTGGCCATCCCCAGGTTTCAAACTCGGGAAGTCGAATCGTGGGAGGGCATGCTGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS CAA 90 bp | TGCCTGCTGGGGCAGCATGCCCTCCCACGATTCGACTTCCCGAGTTaGAAACCTGGGGATGGCCACACCCAGAAACAGCCAGAAACAGTA | + |
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Preference number: 6 (lower is better) Translates to: CLLGQHALPRFDFPS*KPGDGHTQKQPETV Trigger: TACTGTTTCTGGCTGTTTCTGGGTGTGGCCATCCCCAGGTTTCAAACTCGGGAAGTCGAATCGTGGGAGGGCATGCTGCCCCAGCAGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS CCA 72 bp | ATCCACCACAGAGACTTTGGCCTCCTGAAGGTTGTATaGGGGCTTCAGAGGCTCTCCCTCCCCTGTATAGCC | + |
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Preference number: 6 (lower is better) Translates to: IHHRDFGLLKVV*GLQRLSLPCIA Trigger: GGCTATACAGGGGAGGGAGAGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000160485.8 |
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| CDS TCA 72 bp | CAGGTCTTTACATCCACCACAGAGACTTTGGCCTCCTaGAGGTTGTATGGGGGCTTCAGAGGCTCTCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: QVFTSTTETLAS*RLYGGFRGSPS Trigger: GGAGGGAGAGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGATGTAAAGACCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024999.15 ENSMUST00000160377.8 ENSMUST00000160485.8 |
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| CDS CCA 72 bp | TGCCCTCCCACGATTCGACTTCCCGAGTTTGAAACCTaGGGATGGCCACACCCAGAAACAGCCAGAAACAGT | + |
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Preference number: 6 (lower is better) Translates to: CPPTIRLPEFET*GWPHPETARNS Trigger: ACTGTTTCTGGCTGTTTCTGGGTGTGGCCATCCCCAGGTTTCAAACTCGGGAAGTCGAATCGTGGGAGGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS CCA 72 bp | CCCACGATTCGACTTCCCGAGTTTGAAACCTGGGGATaGCCACACCCAGAAACAGCCAGAAACAGTAGGATG | + |
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Preference number: 6 (lower is better) Translates to: PTIRLPEFETWG*PHPETARNSRM Trigger: CATCCTACTGTTTCTGGCTGTTTCTGGGTGTGGCCATCCCCAGGTTTCAAACTCGGGAAGTCGAATCGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024999.15 |
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| CDS CCA 72 bp | ATCCACCACAGAGACTTTGGCCTCCTGAAGGTTGTATaGGGGCTTCAGAGGCTCAGAAACAGCCAGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: IHHRDFGLLKVV*GLQRLRNSQKQ Trigger: CTGTTTCTGGCTGTTTCTGAGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162021.8 |
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| CDS TCA 72 bp | CAGGTCTTTACATCCACCACAGAGACTTTGGCCTCCTaGAGGTTGTATGGGGGCTTCAGAGGCTCAGAAACA | + |
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Preference number: 6 (lower is better) Translates to: QVFTSTTETLAS*RLYGGFRGSET Trigger: TGTTTCTGAGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGATGTAAAGACCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162021.8 |
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