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Pregenerated sensors for TPRG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048399

Ensembl transcript IDs: ENSMUST00000056087.4

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CTCTGTCAGGAGCCAGAAGCCTTGAACAGTCTCCCCAGAAGTCTGTaGTATGTGGCCTTTCAAGTCTTCCACAGCAGTCTCAATGGCCCC +
Preference number: 5 (lower is better)
Translates to: LCQEPEALNSLPRSL*YVAFQVFHSSLNGP
Trigger: GGGGCCATTGAGACTGCTGTGGAAGACTTGAAAGGCCACATAGCACAGACTTCTGGGGAGACTGTTCAAGGCTTCTGGCTCCTGACAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS GCA 90 bp CCCAGACAGATGCAGCAGATGGCATTCAGGGGAACCTGCTGCACCTaGACACAGCTGAGCATGATGAAGTCGTATTTGCAGATCAAGAGG +
Preference number: 5 (lower is better)
Translates to: PRQMQQMAFRGTCCT*TQLSMMKSYLQIKR
Trigger: CCTCTTGATCTGCAAATACGACTTCATCATGCTCAGCTGTGTGCAGGTGCAGCAGGTTCCCCTGAATGCCATCTGCTGCATCTGTCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS TCA 90 bp CACAGCAGTCTCAATGGCCCCTGGCCGTGTAACAAAGTACTTCCGTaGAACATAGGGCTGGCGATAAGGATTGGGGTACAGTGTCGCTTT +
Preference number: 5 (lower is better)
Translates to: HSSLNGPWPCNKVLP*NIGLAIRIGVQCRF
Trigger: AAAGCGACACTGTACCCCAATCCTTATCGCCAGCCCTATGTTTCACGGAAGTACTTTGTTACACGGCCAGGGGCCATTGAGACTGCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS GCA 90 bp AACTTGCCCAGACAGATGCAGCAGATGGCATTCAGGGGAACCTGCTaGACCTGCACACAGCTGAGCATGATGAAGTCGTATTTGCAGATC +
Preference number: 5 (lower is better)
Translates to: NLPRQMQQMAFRGTC*TCTQLSMMKSYLQI
Trigger: GATCTGCAAATACGACTTCATCATGCTCAGCTGTGTGCAGGTGCAGCAGGTTCCCCTGAATGCCATCTGCTGCATCTGTCTGGGCAAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CCA 90 bp CCTGAATTCCCCTCCTTTGTGGACAAGTGGTCATTTTCAGAGGGTTaGTCCTCTTCCTCTTGCTTCAAAGACACGGGCTGGAATCCGTCA +
Preference number: 5 (lower is better)
Translates to: PEFPSFVDKWSFSEG*SSSSCFKDTGWNPS
Trigger: TGACGGATTCCAGCCCGTGTCTTTGAAGCAAGAGGAAGAGGACCAACCCTCTGAAAATGACCACTTGTCCACAAAGGAGGGGAATTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CCA 90 bp CTTGATCCTGGGTCCTTGCCTGAATTCCCCTCCTTTGTGGACAAGTaGTCATTTTCAGAGGGTTGGTCCTCTTCCTCTTGCTTCAAAGAC +
Preference number: 5 (lower is better)
Translates to: LDPGSLPEFPSFVDK*SFSEGWSSSSCFKD
Trigger: GTCTTTGAAGCAAGAGGAAGAGGACCAACCCTCTGAAAATGACCACTTGTCCACAAAGGAGGGGAATTCAGGCAAGGACCCAGGATCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS TCA 72 bp CTCAATGGCCCCTGGCCGTGTAACAAAGTACTTCCGTaGAACATAGGGCTGGCGATAAGGATTGGGGTACAG +
Preference number: 6 (lower is better)
Translates to: LNGPWPCNKVLP*NIGLAIRIGVQ
Trigger: CTGTACCCCAATCCTTATCGCCAGCCCTATGTTTCACGGAAGTACTTTGTTACACGGCCAGGGGCCATTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS GCA 72 bp ATGCAGCAGATGGCATTCAGGGGAACCTGCTGCACCTaGACACAGCTGAGCATGATGAAGTCGTATTTGCAG +
Preference number: 6 (lower is better)
Translates to: MQQMAFRGTCCT*TQLSMMKSYLQ
Trigger: CTGCAAATACGACTTCATCATGCTCAGCTGTGTGCAGGTGCAGCAGGTTCCCCTGAATGCCATCTGCTGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CCA 72 bp CCCTCCTTTGTGGACAAGTGGTCATTTTCAGAGGGTTaGTCCTCTTCCTCTTGCTTCAAAGACACGGGCTGG +
Preference number: 6 (lower is better)
Translates to: PSFVDKWSFSEG*SSSSCFKDTGW
Trigger: CCAGCCCGTGTCTTTGAAGCAAGAGGAAGAGGACCAACCCTCTGAAAATGACCACTTGTCCACAAAGGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CCA 72 bp GGGTCCTTGCCTGAATTCCCCTCCTTTGTGGACAAGTaGTCATTTTCAGAGGGTTGGTCCTCTTCCTCTTGC +
Preference number: 6 (lower is better)
Translates to: GSLPEFPSFVDK*SFSEGWSSSSC
Trigger: GCAAGAGGAAGAGGACCAACCCTCTGAAAATGACCACTTGTCCACAAAGGAGGGGAATTCAGGCAAGGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CAA 72 bp GGTCTCTTGTCCAGAGACATCCCTGGGAAAACAAACTaGCCCAGACAGATGCAGCAGATGGCATTCAGGGGA +
Preference number: 6 (lower is better)
Translates to: GLLSRDIPGKTN*PRQMQQMAFRG
Trigger: TCCCCTGAATGCCATCTGCTGCATCTGTCTGGGCAAGTTTGTTTTCCCAGGGATGTCTCTGGACAAGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CAA 90 bp GGAACCTGCTGCACCTGCACACAGCTGAGCATGATGAAGTCGTATTaGCAGATCAAGAGGGTCTTGTCTGTGAGTAGCAGGATCTTCTCC +
Preference number: 6 (lower is better)
Translates to: GTCCTCTQLSMMKSY*QIKRVLSVSSRIFS
Trigger: GGAGAAGATCCTGCTACTCACAGACAAGACCCTCTTGATCTGCAAATACGACTTCATCATGCTCAGCTGTGTGCAGGTGCAGCAGGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CAA 72 bp TCCTTGATCCTGGGTCCTTGCCTGAATTCCCCTCCTTaGTGGACAAGTGGTCATTTTCAGAGGGTTGGTCCT +
Preference number: 6 (lower is better)
Translates to: SLILGPCLNSPP*WTSGHFQRVGP
Trigger: AGGACCAACCCTCTGAAAATGACCACTTGTCCACAAAGGAGGGGAATTCAGGCAAGGACCCAGGATCAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CAA 72 bp CTCTGCTGTCTTGAAATCCTCCTTGATCCTGGGTCCTaGCCTGAATTCCCCTCCTTTGTGGACAAGTGGTCA +
Preference number: 6 (lower is better)
Translates to: LCCLEILLDPGS*PEFPSFVDKWS
Trigger: TGACCACTTGTCCACAAAGGAGGGGAATTCAGGCAAGGACCCAGGATCAAGGAGGATTTCAAGACAGCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS GCA 72 bp AAGTGGTCATTTTCAGAGGGTTGGTCCTCTTCCTCTTaGTTCAAAGACACGGGCTGGAATCCGTCAAAGCTC +
Preference number: 6 (lower is better)
Translates to: KWSFSEGWSSSS*FKDTGWNPSKL
Trigger: GAGCTTTGACGGATTCCAGCCCGTGTCTTTGAAGCAAGAGGAAGAGGACCAACCCTCTGAAAATGACCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4
CDS CAA 90 bp CTTCTCATTGTTCCAGTGATCAATCTCTGTCAGGAGCCAGAAGCCTaGAACAGTCTCCCCAGAAGTCTGTGCTATGTGGCCTTTCAAGTC +
Preference number: 6 (lower is better)
Translates to: LLIVPVINLCQEPEA*NSLPRSLCYVAFQV
Trigger: GACTTGAAAGGCCACATAGCACAGACTTCTGGGGAGACTGTTCAAGGCTTCTGGCTCCTGACAGAGATTGATCACTGGAACAATGAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056087.4