RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TPMT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021376

Ensembl transcript IDs: ENSMUST00000021806.11, ENSMUST00000110118.8, ENSMUST00000124948.2, ENSMUST00000136864.8, ENSMUST00000151509.9, ENSMUST00000154802.2, ENSMUST00000224970.2

Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGAGGGGATGGGATGGGATGTCACCAAACAGGAGTCGGAGCTGCATaGCAAGGACATGGAGAAGCAGCCGGCGAGTGTATGGCTCAGACA +
Preference number: 1 (lower is better)
Translates to: RGDGMGCHQTGVGAA*QGHGEAAGECMAQT
Trigger: TGTCTGAGCCATACACTCGCCGGCTGCTTCTCCATGTCCTTGTCATGCAGCTCCGACTCCTGTTTGGTGACATCCCATCCCATCCCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR GCA 90 bp GCAACTGGGGACTGGAGAGATGGCTCAGCAAGTAAGAGCACTCACTaGTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT +
Preference number: 1 (lower is better)
Translates to: ATGDWRDGSASKSTH*SSEGPEFKSQQPHG
Trigger: ACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTGAGTGCTCTTACTTGCTGAGCCATCTCTCCAGTCCCCAGTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR GCA 90 bp GAAGGCCTGGCGTTTCAGAGCAAATTCTCCCACATCTTCTACTTCTaGTCTCAAGATGTGAAGCAACTGAAGACAGCAAGCCTAGCTGGG +
Preference number: 1 (lower is better)
Translates to: EGLAFQSKFSHIFYF*SQDVKQLKTASLAG
Trigger: CCCAGCTAGGCTTGCTGTCTTCAGTTGCTTCACATCTTGAGAGCAGAAGTAGAAGATGTGGGAGAATTTGCTCTGAAACGCCAGGCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 90 bp CAACCTGCAAAACTATTTAGCACTGACAGCTTAGAGGGGATGGGATaGGATGTCACCAAACAGGAGTCGGAGCTGCATGACAAGGACATG +
Preference number: 1 (lower is better)
Translates to: QPAKLFSTDSLEGMG*DVTKQESELHDKDM
Trigger: CATGTCCTTGTCATGCAGCTCCGACTCCTGTTTGGTGACATCCCATCCCATCCCCTCTAAGCTGTCAGTGCTAAATAGTTTTGCAGGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 90 bp AACCTTCTTGTACCAAAGGGAACTGAAAAGAAGCCACACGTGGGCTaGAATCGGCAAGACTATTATGTTGAAAAATTGAACGCCTGTCTG +
Preference number: 1 (lower is better)
Translates to: NLLVPKGTEKKPHVG*NRQDYYVEKLNACL
Trigger: CAGACAGGCGTTCAATTTTTCAACATAATAGTCTTGCCGATTCCAGCCCACGTGTGGCTTCTTTTCAGTTCCCTTTGGTACAAGAAGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 90 bp CATGGTGGCTCACAACCACCTGTAACGAGATCTGATGCCCTCTTCTaGTGCTGTCTGAAGACAGATTATAGAGTACTTATTTATAATAAT +
Preference number: 1 (lower is better)
Translates to: HGGSQPPVTRSDALF*CCLKTDYRVLIYNN
Trigger: ATTATTATAAATAAGTACTCTATAATCTGTCTTCAGACAGCACCAGAAGAGGGCATCAGATCTCGTTACAGGTGGTTGTGAGCCACCATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR GCA 90 bp GGTGGCTCACAACCACCTGTAACGAGATCTGATGCCCTCTTCTGGTaGTGTCTGAAGACAGATTATAGAGTACTTATTTATAATAATAAA +
Preference number: 1 (lower is better)
Translates to: GGSQPPVTRSDALFW*CLKTDYRVLIYNNK
Trigger: TTTATTATTATAAATAAGTACTCTATAATCTGTCTTCAGACAGCACCAGAAGAGGGCATCAGATCTCGTTACAGGTGGTTGTGAGCCACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR TCA 90 bp AGACAGATTATAGAGTACTTATTTATAATAATAAATCTTTGGGCCTaGGCAAGGAGGCTGACTGGAGTGAGCAGAGGTCCTAAAGTCAAT +
Preference number: 1 (lower is better)
Translates to: RQIIEYLFIIINLWA*ARRLTGVSRGPKVN
Trigger: ATTGACTTTAGGACCTCTGCTCACTCCAGTCAGCCTCCTTGCTCAGGCCCAAAGATTTATTATTATAAATAAGTACTCTATAATCTGTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR-3UTR CCA 90 bp TCCAGAGAGCAGCCCAGTCCCTCAGCTCCCACAGAGGAGATCCCATCCCAACCTAGCCTGTCTCATCACTaGAGGCTGCTAGGACCTGGC +
Preference number: 2 (lower is better)
Translates to: SREQPSPSAPTEEIPSQPSLSHH*RLLGPG
Trigger: GCCAGGTCCTAGCAGCCTCCAGTGATGAGACAGGCT...AGGTTGGGATGGGATCTCCTCTGTGGGAGCTGAGGGACTGGGCTGCTCTCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR-3UTR TCA 90 bp CCATCCCAACCTGCAAAACTATTTAGCACTGACAGCTTAGAGGGGATGGGATGGGGAGTCGGAGCTGCATaGCAAGGACATGGAGAAGCA +
Preference number: 2 (lower is better)
Translates to: PSQPAKLFSTDSLEGMGWGVGAA*QGHGEA
Trigger: TGCTTCTCCATGTCCTTGTCATGCAGCTCCGACTCC...CCATCCCATCCCCTCTAAGCTGTCAGTGCTAAATAGTTTTGCAGGTTGGGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR-3UTR GCA 90 bp GAGAGGGCAACTGGGGACTGGAGAGATGGCTCAGCAAGTAAGAGCACTCACTGCCACATCTTCTACTTCTaGTCTCAAGATGTGAAGCAA +
Preference number: 2 (lower is better)
Translates to: ERATGDWRDGSASKSTHCHIFYF*SQDVKQ
Trigger: TTGCTTCACATCTTGAGAGCAGAAGTAGAAGATGTG...GCAGTGAGTGCTCTTACTTGCTGAGCCATCTCTCCAGTCCCCAGTTGCCCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR TCA 72 bp GGGATGGGATGTCACCAAACAGGAGTCGGAGCTGCATaGCAAGGACATGGAGAAGCAGCCGGCGAGTGTATG +
Preference number: 3 (lower is better)
Translates to: GMGCHQTGVGAA*QGHGEAAGECM
Trigger: CATACACTCGCCGGCTGCTTCTCCATGTCCTTGTCATGCAGCTCCGACTCCTGTTTGGTGACATCCCATCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR-3UTR CAA 90 bp GAGAGGGCAACTGGGGACTGGAGAGATGGCTCAGCAAGTAAGAGCACTCACTGCGTCTCTCTGGCTGTCTaGGAACTCACTGGTAGACCA +
Preference number: 3 (lower is better)
Translates to: ERATGDWRDGSASKSTHCVSLAV*ELTGRP
Trigger: TGGTCTACCAGTGAGTTCCAAGACAGCCAGAGAGAC...GCAGTGAGTGCTCTTACTTGCTGAGCCATCTCTCCAGTCCCCAGTTGCCCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR TCA 72 bp CCTCATCCTTCAGAAGACCAATGGGAAGGATCTTACTaGGAGGGCAACTGGGGACTGGAGAGATGGCTCAGC +
Preference number: 3 (lower is better)
Translates to: PHPSEDQWEGSY*EGNWGLERWLS
Trigger: GCTGAGCCATCTCTCCAGTCCCCAGTTGCCCTCTCAGTAAGATCCTTCCCATTGGTCTTCTGAAGGATGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 72 bp CATGACAAGGACATGGAGAAGCAGCCGGCGAGTGTATaGCTCAGACAGTGCACTTGTGTCACTAAGGGTGAG +
Preference number: 3 (lower is better)
Translates to: HDKDMEKQPASV*LRQCTCVTKGE
Trigger: CTCACCCTTAGTGACACAAGTGCACTGTCTGAGCCATACACTCGCCGGCTGCTTCTCCATGTCCTTGTCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 72 bp AATGGGAAGGATCTTACTGAGAGGGCAACTGGGGACTaGAGAGATGGCTCAGCAAGTAAGAGCACTCACTGC +
Preference number: 3 (lower is better)
Translates to: NGKDLTERATGD*RDGSASKSTHC
Trigger: GCAGTGAGTGCTCTTACTTGCTGAGCCATCTCTCCAGTCCCCAGTTGCCCTCTCAGTAAGATCCTTCCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 72 bp TGTGGCCTTGTCGGAGTAGGTGTGTCACTGTGGGTGTaGGTTATAAGACCCTCATCCTTCAGAAGACCAATG +
Preference number: 3 (lower is better)
Translates to: CGLVGVGVSLWV*VIRPSSFRRPM
Trigger: CATTGGTCTTCTGAAGGATGAGGGTCTTATAACCCACACCCACAGTGACACACCTACTCCGACAAGGCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 72 bp AAACTATTTAGCACTGACAGCTTAGAGGGGATGGGATaGGATGTCACCAAACAGGAGTCGGAGCTGCATGAC +
Preference number: 3 (lower is better)
Translates to: KLFSTDSLEGMG*DVTKQESELHD
Trigger: GTCATGCAGCTCCGACTCCTGTTTGGTGACATCCCATCCCATCCCCTCTAAGCTGTCAGTGCTAAATAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 72 bp TGGTTTTCTATTTGGTTTTTCCAGATAGGGTCTCTCTaGCTGTCTTGGAACTCACTGGTAGACCAGGCTAGC +
Preference number: 3 (lower is better)
Translates to: WFSIWFFQIGSL*LSWNSLVDQAS
Trigger: GCTAGCCTGGTCTACCAGTGAGTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAACCAAATAGAAAACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
3UTR GCA 72 bp GCGTTTCAGAGCAAATTCTCCCACATCTTCTACTTCTaGTCTCAAGATGTGAAGCAACTGAAGACAGCAAGC +
Preference number: 3 (lower is better)
Translates to: AFQSKFSHIFYF*SQDVKQLKTAS
Trigger: GCTTGCTGTCTTCAGTTGCTTCACATCTTGAGAGCAGAAGTAGAAGATGTGGGAGAATTTGCTCTGAAACGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR GCA 72 bp CTGGCTGACATCCTCAGGAACAATCAGAACCTGAGTTaGCTAAACGTTTCAGAGAACATTCTAGAAGACTCT +
Preference number: 3 (lower is better)
Translates to: LADILRNNQNLS*LNVSENILEDS
Trigger: AGAGTCTTCTAGAATGTTCTCTGAAACGTTTAGGCAACTCAGGTTCTGATTGTTCCTGAGGATGTCAGCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 72 bp TCACAACCACCTGTAACGAGATCTGATGCCCTCTTCTaGTGCTGTCTGAAGACAGATTATAGAGTACTTATT +
Preference number: 3 (lower is better)
Translates to: SQPPVTRSDALF*CCLKTDYRVLI
Trigger: AATAAGTACTCTATAATCTGTCTTCAGACAGCACCAGAAGAGGGCATCAGATCTCGTTACAGGTGGTTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR TCA 72 bp ATAGAGTACTTATTTATAATAATAAATCTTTGGGCCTaGGCAAGGAGGCTGACTGGAGTGAGCAGAGGTCCT +
Preference number: 3 (lower is better)
Translates to: IEYLFIIINLWA*ARRLTGVSRGP
Trigger: AGGACCTCTGCTCACTCCAGTCAGCCTCCTTGCTCAGGCCCAAAGATTTATTATTATAAATAAGTACTCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CCA 72 bp TTCTTGTACCAAAGGGAACTGAAAAGAAGCCACACGTaGGCTGGAATCGGCAAGACTATTATGTTGAAAAAT +
Preference number: 3 (lower is better)
Translates to: FLYQRELKRSHT*AGIGKTIMLKN
Trigger: ATTTTTCAACATAATAGTCTTGCCGATTCCAGCCCACGTGTGGCTTCTTTTCAGTTCCCTTTGGTACAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
CDS-3UTR TCA 90 bp TGGACAGTGAGGGGAGGTGAACTAGTCTTGCTTATAGAGCTAGCTGTGCAATGCCCGGGTCCCTCCTGCTaGCTCTTGCAGAGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: WTVRGGELVLLIELAVQCPGPSC*LLQRLR
Trigger: CCTCAGCCTCTGCAAGAGTCAGCAGGAGGGACCCGG...GCATTGCACAGCTAGCTCTATAAGCAAGACTAGTTCACCTCCCCTCACTGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS-3UTR TCA 90 bp TGGACAGTGAGGGGAGGTGAACTAGTCTTGCTTATAGAGCTAGCTGTGCAATGCGACTCTTGCAGAGGCTaGGGTCTGGCTGTCTCTGCT +
Preference number: 4 (lower is better)
Translates to: WTVRGGELVLLIELAVQCDSCRG*GLAVSA
Trigger: AGCAGAGACAGCCAGACCTCAGCCTCTGCAAGAGTC...GCATTGCACAGCTAGCTCTATAAGCAAGACTAGTTCACCTCCCCTCACTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS-3UTR CCA 90 bp TGGACAGTGAGGGGAGGTGAACTAGTCTTGCTTATAGAGCTAGCTGTGCAATGCGCAGAGGCTGAGGTCTaGCTGTCTCTGCTAGGTAGT +
Preference number: 4 (lower is better)
Translates to: WTVRGGELVLLIELAVQCAEAEV*LSLLGS
Trigger: ACTACCTAGCAGAGACAGCCAGACCTCAGCCTCTGC...GCATTGCACAGCTAGCTCTATAAGCAAGACTAGTTCACCTCCCCTCACTGTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS-3UTR CCA 90 bp GAGAGGGCAACTGGGGACTGGAGAGATGGCTCAGCAAGTAAGAGCACTCACTGCTCCAGGGTTAGTACTTaGTTCTTTTGTACCTCAGCA +
Preference number: 4 (lower is better)
Translates to: ERATGDWRDGSASKSTHCSRVST*FFCTSA
Trigger: TGCTGAGGTACAAAAGAACCAAGTACTAACCCTGGA...GCAGTGAGTGCTCTTACTTGCTGAGCCATCTCTCCAGTCCCCAGTTGCCCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
CDS-3UTR CCA 90 bp ACAGTGAGGGGAGGTGAACTAGTCTTGCTTATAGAGCTAGCTGTGCAATGCTGTGCTGAGAACTTTTCCTaGTGTCTCTCCGGGTCCCTC +
Preference number: 4 (lower is better)
Translates to: TVRGGELVLLIELAVQCCAENFS*CLSGSL
Trigger: GAGGGACCCGGAGAGACACCAGGAAAAGTTCTCAGC...ACAGCATTGCACAGCTAGCTCTATAAGCAAGACTAGTTCACCTCCCCTCACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS-3UTR TCA 90 bp ACAGTGAGGGGAGGTGAACTAGTCTTGCTTATAGAGCTAGCTGTGCAATGCTGTGATTCCACCTCCATATaGATGCTGGGACCCAAACCT +
Preference number: 4 (lower is better)
Translates to: TVRGGELVLLIELAVQCCDSTSI*MLGPKP
Trigger: AGGTTTGGGTCCCAGCATTCATATGGAGGTGGAATC...ACAGCATTGCACAGCTAGCTCTATAAGCAAGACTAGTTCACCTCCCCTCACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS-3UTR GCA 90 bp CCATCCCAACCTGCAAAACTATTTAGCACTGACAGCTTAGAGGGGATGGGATGGACCTCAGCATCAGGGTaGTCTTTCATATCAAGGGAC +
Preference number: 4 (lower is better)
Translates to: PSQPAKLFSTDSLEGMGWTSASG*SFISRD
Trigger: GTCCCTTGATATGAAAGAGCACCCTGATGCTGAGGT...CCATCCCATCCCCTCTAAGCTGTCAGTGCTAAATAGTTTTGCAGGTTGGGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
CDS-3UTR GCA 90 bp TGGTTTTTCCAGATAGGGTCTCTCTGGCTGTCTTGGAACTCACTGGTAGACCAGACCTCAGCATCAGGGTaGTCTTTCATATCAAGGGAC +
Preference number: 4 (lower is better)
Translates to: WFFQIGSLWLSWNSLVDQTSASG*SFISRD
Trigger: GTCCCTTGATATGAAAGAGCACCCTGATGCTGAGGT...CTGGTCTACCAGTGAGTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
CDS-3UTR GCA 90 bp ACAGTGAGGGGAGGTGAACTAGTCTTGCTTATAGAGCTAGCTGTGCAATGCTGTCCACCTCCATATGAATaGTGGGACCCAAACCTGTGT +
Preference number: 4 (lower is better)
Translates to: TVRGGELVLLIELAVQCCPPPYE*WDPNLC
Trigger: ACACAGGTTTGGGTCCCAGCATTCATATGGAGGTGG...ACAGCATTGCACAGCTAGCTCTATAAGCAAGACTAGTTCACCTCCCCTCACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS-3UTR TCA 90 bp CCATCCCAACCTGCAAAACTATTTAGCACTGACAGCTTAGAGGGGATGGGATGGACAGCCACAAGGTACTaGAACTCTTTTCTCAGTAGG +
Preference number: 4 (lower is better)
Translates to: PSQPAKLFSTDSLEGMGWTATRY*NSFLSR
Trigger: CCTACTGAGAAAAGAGTTTCAGTACCTTGTGGCTGT...CCATCCCATCCCCTCTAAGCTGTCAGTGCTAAATAGTTTTGCAGGTTGGGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
CDS-3UTR CCA 90 bp TTTTTCCAGATAGGGTCTCTCTGGCTGTCTTGGAACTCACTGGTAGACCAGGCTTGGAACATAAAATGGTaGGCCTGCGTGTTTTGTTGG +
Preference number: 4 (lower is better)
Translates to: FFQIGSLWLSWNSLVDQAWNIKW*ACVFCW
Trigger: CCAACAAAACACGCAGGCCCACCATTTTATGTTCCA...AGCCTGGTCTACCAGTGAGTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
CDS-3UTR TCA 90 bp TTGGTTTTTCCAGATAGGGTCTCTCTGGCTGTCTTGGAACTCACTGGTAGACCAACAGCCACAAGGTACTaGAACTCTTTTCTCAGTAGG +
Preference number: 4 (lower is better)
Translates to: LVFPDRVSLAVLELTGRPTATRY*NSFLSR
Trigger: CCTACTGAGAAAAGAGTTTCAGTACCTTGTGGCTGT...TGGTCTACCAGTGAGTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAACCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
CDS-3UTR CCA 90 bp ACAGTGAGGGGAGGTGAACTAGTCTTGCTTATAGAGCTAGCTGTGCAATGCTGTTGGAACATAAAATGGTaGGCCTGCGTGTTTTGTTGG +
Preference number: 4 (lower is better)
Translates to: TVRGGELVLLIELAVQCCWNIKW*ACVFCW
Trigger: CCAACAAAACACGCAGGCCCACCATTTTATGTTCCA...ACAGCATTGCACAGCTAGCTCTATAAGCAAGACTAGTTCACCTCCCCTCACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS-3UTR CCA 90 bp ATTTGGTTTTTCCAGATAGGGTCTCTCTGGCTGTCTTGGAACTCACTGGTAGACTGGAACATAAAATGGTaGGCCTGCGTGTTTTGTTGG +
Preference number: 4 (lower is better)
Translates to: IWFFQIGSLWLSWNSLVDWNIKW*ACVFCW
Trigger: CCAACAAAACACGCAGGCCCACCATTTTATGTTCCA...GTCTACCAGTGAGTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAACCAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
CDS-3UTR GCA 90 bp TTTTTCCAGATAGGGTCTCTCTGGCTGTCTTGGAACTCACTGGTAGACCAGGCTGAAGATCAAATATGCTaGAGCAGTATAAGGAAATGC +
Preference number: 4 (lower is better)
Translates to: FFQIGSLWLSWNSLVDQAEDQIC*SSIRKC
Trigger: GCATTTCCTTATACTGCTGCAGCATATTTGATCTTC...AGCCTGGTCTACCAGTGAGTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
CDS-3UTR CCA 90 bp TTCTATTTGGTTTTTCCAGATAGGGTCTCTCTGGCTGTCTTGGAACTCACTGGTTCCAGGGTTAGTACTTaGTTCTTTTGTACCTCAGCA +
Preference number: 4 (lower is better)
Translates to: FYLVFPDRVSLAVLELTGSRVST*FFCTSA
Trigger: TGCTGAGGTACAAAAGAACCAAGTACTAACCCTGGA...ACCAGTGAGTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAACCAAATAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
CDS-3UTR GCA 90 bp GGTTGGTTTTCTATTTGGTTTTTCCAGATAGGGTCTCTCTGGCTGTCTTGGAACGAAGATCAAATATGCTaGAGCAGTATAAGGAAATGC +
Preference number: 4 (lower is better)
Translates to: GWFSIWFFQIGSLWLSWNEDQIC*SSIRKC
Trigger: GCATTTCCTTATACTGCTGCAGCATATTTGATCTTC...GTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAACCAAATAGAAAACCAACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
CDS-3UTR GCA 90 bp GACATCCTCAGGAACAATCAGAACCTGAGTTGCCTAAACGTTTCAGAGAACATTCTTCAAGGCATTGCATaGTGCATTTTGTACCAAATA +
Preference number: 4 (lower is better)
Translates to: DILRNNQNLSCLNVSENILQGIA*CILYQI
Trigger: TATTTGGTACAAAATGCAGCATGCAATGCCTTGAAG...AATGTTCTCTGAAACGTTTAGGCAACTCAGGTTCTGATTGTTCCTGAGGATGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CAA 72 bp TTTTCGAGGATGAATATAATCATCTTGAGAACCTTCTaGTACCAAAGGGAACTGAAAAGAAGCCACACGTGG +
Preference number: 4 (lower is better)
Translates to: FSRMNIIILRTF*YQRELKRSHTW
Trigger: CCACGTGTGGCTTCTTTTCAGTTCCCTTTGGTACAAGAAGGTTCTCAAGATGATTATATTCATCCTCGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
3UTR CAA 72 bp GAAAAATTAAGTGATTGTATTTTTAACTGTGATGGTTaGTATATGCTCAGCCAAGGGAGTGGCACTATTAGA +
Preference number: 4 (lower is better)
Translates to: EKLSDCIFNCDG*YMLSQGSGTIR
Trigger: TCTAATAGTGCCACTCCCTTGGCTGAGCATATACAAACCATCACAGTTAAAAATACAATCACTTAATTTTTC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
CDS CCA 90 bp TGTCTCTCCGGGTCCCTCCTGCTGACTCTTGCAGAGGCTGAGGTCTaGCTGTCTCTGCTAGGTAGTGCCACCGCTGCTGATTCCACCTCC +
Preference number: 5 (lower is better)
Translates to: CLSGSLLLTLAEAEV*LSLLGSATAADSTS
Trigger: GGAGGTGGAATCAGCAGCGGTGGCACTACCTAGCAGAGACAGCCAGACCTCAGCCTCTGCAAGAGTCAGCAGGAGGGACCCGGAGAGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS-3UTR CAA 90 bp TTCTATTTGGTTTTTCCAGATAGGGTCTCTCTGGCTGTCTTGGAACTCACTGGTTACCTCTTCAAGGCATaGCATGCTGCATTTTGTACC +
Preference number: 5 (lower is better)
Translates to: FYLVFPDRVSLAVLELTGYLFKA*HAAFCT
Trigger: GGTACAAAATGCAGCATGCAATGCCTTGAAGAGGTA...ACCAGTGAGTTCCAAGACAGCCAGAGAGACCCTATCTGGAAAAACCAAATAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
CDS GCA 90 bp CAGGCTTTATGCCTTTCTTCCAAAGCATCTACCTCTTCAAGGCATTaGATGCTGCATTTTGTACCAAATAACCTTTTAAGTTCAGCAGAT +
Preference number: 5 (lower is better)
Translates to: QALCLSSKASTSSRH*MLHFVPNNLLSSAD
Trigger: ATCTGCTGAACTTAAAAGGTTATTTGGTACAAAATGCAGCATGCAATGCCTTGAAGAGGTAGATGCTTTGGAAGAAAGGCATAAAGCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11
CDS CCA 72 bp GGGTCCCTCCTGCTGACTCTTGCAGAGGCTGAGGTCTaGCTGTCTCTGCTAGGTAGTGCCACCGCTGCTGAT +
Preference number: 6 (lower is better)
Translates to: GSLLLTLAEAEV*LSLLGSATAAD
Trigger: ATCAGCAGCGGTGGCACTACCTAGCAGAGACAGCCAGACCTCAGCCTCTGCAAGAGTCAGCAGGAGGGACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS TCA 72 bp AGAACTTTTCCTGGTGTCTCTCCGGGTCCCTCCTGCTaGCTCTTGCAGAGGCTGAGGTCTGGCTGTCTCTGC +
Preference number: 6 (lower is better)
Translates to: RTFPGVSPGPSC*LLQRLRSGCLC
Trigger: GCAGAGACAGCCAGACCTCAGCCTCTGCAAGAGTCAGCAGGAGGGACCCGGAGAGACACCAGGAAAAGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS TCA 72 bp CTAGGTAGTGCCACCGCTGCTGATTCCACCTCCATATaGATGCTGGGACCCAAACCTGTGTGTTCAAATAAC +
Preference number: 6 (lower is better)
Translates to: LGSATAADSTSI*MLGPKPVCSNN
Trigger: GTTATTTGAACACACAGGTTTGGGTCCCAGCATTCATATGGAGGTGGAATCAGCAGCGGTGGCACTACCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS GCA 72 bp GTAGTGCCACCGCTGCTGATTCCACCTCCATATGAATaGTGGGACCCAAACCTGTGTGTTCAAATAACCTTT +
Preference number: 6 (lower is better)
Translates to: VVPPLLIPPPYE*WDPNLCVQITF
Trigger: AAAGGTTATTTGAACACACAGGTTTGGGTCCCAGCATTCATATGGAGGTGGAATCAGCAGCGGTGGCACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224970.2
CDS TCA 72 bp TGGTACCATCCACGGGTTGTAGACAATTTTTGTCTCTaGGGTTGGTGTCTCCAGTGCCTAAGTGGAAAGACA +
Preference number: 6 (lower is better)
Translates to: WYHPRVVDNFCL*GWCLQCLSGKT
Trigger: TGTCTTTCCACTTAGGCACTGGAGACACCAACCTCAGAGACAAAAATTGTCTACAACCCGTGGATGGTACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124948.2
CDS CCA 72 bp ACCCACTTCTCTTTCCAGTCTTCCAGGGTTAGTACTTaGTTCTTTTGTACCTCAGCATCAGGGTGCTCTTTC +
Preference number: 6 (lower is better)
Translates to: THFSFQSSRVST*FFCTSASGCSF
Trigger: GAAAGAGCACCCTGATGCTGAGGTACAAAAGAACCAAGTACTAACCCTGGAAGACTGGAAAGAGAAGTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021806.11
ENSMUST00000110118.8
ENSMUST00000124948.2
ENSMUST00000136864.8
ENSMUST00000151509.9
ENSMUST00000154802.2
CDS CCA 72 bp CCTCAGCATCAGGGTGCTCTTTCATATCAAGGGACATaGTACCATCCACGGGTTGTAGACAATTTTTGTCTC +
Preference number: 6 (lower is better)
Translates to: PQHQGALSYQGT*YHPRVVDNFCL
Trigger: GAGACAAAAATTGTCTACAACCCGTGGATGGTACCATGTCCCTTGATATGAAAGAGCACCCTGATGCTGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000124948.2
ENSMUST00000151509.9
CDS GCA 72 bp TGCCTTTCTTCCAAAGCATCTACCTCTTCAAGGCATTaGATGCTGCATTTTGTACCAAATAACCTTTTAAGT +
Preference number: 6 (lower is better)
Translates to: CLSSKASTSSRH*MLHFVPNNLLS
Trigger: ACTTAAAAGGTTATTTGGTACAAAATGCAGCATGCAATGCCTTGAAGAGGTAGATGCTTTGGAAGAAAGGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021806.11