Pregenerated sensors for TPM4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031799Ensembl transcript IDs: ENSMUST00000003575.11, ENSMUST00000238492.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTATTTGAGACAGAGTTTCGCCGTATAGCCCTGGCTGAAAAGGGTTaGACTCTGCCATATTCCCTGCTGGGTATATCATTAGACCACAGC | + |
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Preference number: 1 (lower is better) Translates to: LFETEFRRIALAEKG*TLPYSLLGISLDHS Trigger: GCTGTGGTCTAATGATATACCCAGCAGGGAATATGGCAGAGTCCAACCCTTTTCAGCCAGGGCTATACGGCGAAACTCTGTCTCAAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR TCA 90 bp | CATGGAACAGCATTAAAGCTCAGTCAGAAGGCACATGGGCAACAATaGTCACCCCAGCATTCTCGCTTGGAATGCTTAAAGACAATCTGT | + |
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Preference number: 1 (lower is better) Translates to: HGTALKLSQKAHGQQ*SPQHSRLECLKTIC Trigger: ACAGATTGTCTTTAAGCATTCCAAGCGAGAATGCTGGGGTGATCATTGTTGCCCATGTGCCTTCTGACTGAGCTTTAATGCTGTTCCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR CCA 90 bp | AAAGATGTAACATGGAACAGCATTAAAGCTCAGTCAGAAGGCACATaGGCAACAATGATCACCCCAGCATTCTCGCTTGGAATGCTTAAA | + |
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Preference number: 1 (lower is better) Translates to: KDVTWNSIKAQSEGT*ATMITPAFSLGMLK Trigger: TTTAAGCATTCCAAGCGAGAATGCTGGGGTGATCATTGTTGCCCATGTGCCTTCTGACTGAGCTTTAATGCTGTTCCATGTTACATCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGCATTCTCGCTTGGAATGCTTAAAGACAATCTGTTCTGCACAGGGCCGTGTACAGGGCACACTCTCTaGAGTGGAGTTGGTGTTAAA | + |
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Preference number: 2 (lower is better) Translates to: PAFSLGMLKDNLFCTGPCTGHTL*SGVGVK Trigger: TTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGT...ACACGGCCCTGTGCAGAACAGATTGTCTTTAAGCATTCCAAGCGAGAATGCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCTCACAAAACTTCCCCAACAGCAACCAGCTAAGATTAGATACTTGAGCCTGACAGGGCACACTCTCTaGAGTGGAGTTGGTGTTAAA | + |
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Preference number: 2 (lower is better) Translates to: SLTKLPQQQPAKIRYLSLTGHTL*SGVGVK Trigger: TTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGT...CAGGCTCAAGTATCTAATCTTAGCTGGTTGCTGTTGGGGAAGTTTTGTGAGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCTCACAAAACTTCCCCAACAGCAACCAGCTAAGATTAGATACTTGAGCCTGAATTCATTATCTGCTTaGCATTTCCTGCAAGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: SLTKLPQQQPAKIRYLSLNSLSA*HFLQGG Trigger: TCCACCTTGCAGGAAATGCCAAGCAGATAATGAATT...CAGGCTCAAGTATCTAATCTTAGCTGGTTGCTGTTGGGGAAGTTTTGTGAGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR GCA 90 bp | ACAAAACTTCCCCAACAGCAACCAGCTAAGATTAGATACTTGAGCCTGTGCTTCAATCAGAGAAGCTGGTaGCATTTGAATGGAAAAGGA | + |
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Preference number: 2 (lower is better) Translates to: TKLPQQQPAKIRYLSLCFNQRSW*HLNGKG Trigger: TCCTTTTCCATTCAAATGGCACCAGCTTCTCTGATT...GAAGCACAGGCTCAAGTATCTAATCTTAGCTGGTTGCTGTTGGGGAAGTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR GCA 90 bp | TTTTCTATCACTACTTTGCTGCTGGAGAGACCTTTTGTTGCCCAACACTTGGTACATGAATTCATTATCTaGTTGGCATTTCCTGCAAGG | + |
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Preference number: 2 (lower is better) Translates to: FSITTLLLERPFVAQHLVHEFII*LAFPAR Trigger: CCTTGCAGGAAATGCCAAGCAGATAATGAATTCATG...TACCAAGTGTTGGGCAACAAAAGGTCTCTCCAGCAGCAAAGTAGTGATAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR CCA 90 bp | TATATCATTAGACCACAGCAGAAAAGTCCTGGAATAAGACGCTTGCTCCTCAGAAATTCATTATCTGCTTaGCATTTCCTGCAAGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: YIIRPQQKSPGIRRLLLRNSLSA*HFLQGG Trigger: TCCACCTTGCAGGAAATGCCAAGCAGATAATGAATT...TCTGAGGAGCAAGCGTCTTATTCCAGGACTTTTCTGCTGTGGTCTAATGATATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR GCA 90 bp | TGGCAAAGTCAAGCTTCCATTTGTTGTTCCCTGAACAATGGAGATGAAGTTAAGTTTCTATCACTACTTTaGTGCTGGAGAGACCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: WQSQASICCSLNNGDEVKFLSLL*CWRDLL Trigger: CAAAAGGTCTCTCCAGCAGCAAAGTAGTGATAGAAA...CTTAACTTCATCTCCATTGTTCAGGGAACAACAAATGGAAGCTTGACTTTGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAAACTTCCCCAACAGCAACCAGCTAAGATTAGATACTTGAGCCTGTGCTTCAATAATCAGAGAAGCTaGTGCCATTTGAATGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: TKLPQQQPAKIRYLSLCFNNQRS*CHLNGK Trigger: TTTTCCATTCAAATGGCACCAGCTTCTCTGATTATT...GAAGCACAGGCTCAAGTATCTAATCTTAGCTGGTTGCTGTTGGGGAAGTTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR CAA 90 bp | ACCTTTTGTTGCCCAACACTTGGTATTAGTACAATGCTCAATGTATaGAAGGCAACTAAGCCTTTTTATTATTTGAGACAGAGTTTCGCC | + |
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Preference number: 2 (lower is better) Translates to: TFCCPTLGISTMLNV*KATKPFYYLRQSFA Trigger: GGCGAAACTCTGTCTCAAATAATAAAAAGGCTTAGTTGCCTTCAATACATTGAGCATTGTACTAATACCAAGTGTTGGGCAACAAAAGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR CCA 72 bp | ACATGGAACAGCATTAAAGCTCAGTCAGAAGGCACATaGGCAACAATGATCACCCCAGCATTCTCGCTTGGA | + |
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Preference number: 3 (lower is better) Translates to: TWNSIKAQSEGT*ATMITPAFSLG Trigger: TCCAAGCGAGAATGCTGGGGTGATCATTGTTGCCCATGTGCCTTCTGACTGAGCTTTAATGCTGTTCCATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR CCA 72 bp | ACAGAGTTTCGCCGTATAGCCCTGGCTGAAAAGGGTTaGACTCTGCCATATTCCCTGCTGGGTATATCATTA | + |
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Preference number: 3 (lower is better) Translates to: TEFRRIALAEKG*TLPYSLLGISL Trigger: TAATGATATACCCAGCAGGGAATATGGCAGAGTCCAACCCTTTTCAGCCAGGGCTATACGGCGAAACTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR CAA 90 bp | ACATGGAACAGCATTAAAGCTCAGTCAGAAGGCACATGGGCAACAATGATCACCGAATTCATTATCTGCTaGGCATTTCCTGCAAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: TWNSIKAQSEGTWATMITEFIIC*AFPARW Trigger: CCACCTTGCAGGAAATGCCAAGCAGATAATGAATTC...GGTGATCATTGTTGCCCATGTGCCTTCTGACTGAGCTTTAATGCTGTTCCATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR CCA 72 bp | AACTTCTTACAAAAGAGGAAGACAGGGCACACTCTCTaGAGTGGAGTTGGTGTTAAAACAGTACTCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: NFLQKRKTGHTL*SGVGVKTVLFW Trigger: CCAGAAGAGTACTGTTTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGTCTTCCTCTTTTGTAAGAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR CCA 72 bp | ACAGAGCACTCCACATCCAGTTCAATCAGGAGGTCTTaGTCTTTTATTAGTGTCATTCCCGAAGGAATTCAA | + |
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Preference number: 3 (lower is better) Translates to: TEHSTSSSIRRS*SFISVIPEGIQ Trigger: TTGAATTCCTTCGGGAATGACACTAATAAAAGACCAAGACCTCCTGATTGAACTGGATGTGGAGTGCTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR-3UTR CAA 90 bp | TGGCAAAGTCAAGCTTCCATTTGTTGTTCCCTGAACAATGGAGATGAAGTTAAGGAATTCATTATCTGCTaGGCATTTCCTGCAAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: WQSQASICCSLNNGDEVKEFIIC*AFPARW Trigger: CCACCTTGCAGGAAATGCCAAGCAGATAATGAATTC...CTTAACTTCATCTCCATTGTTCAGGGAACAACAAATGGAAGCTTGACTTTGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR GCA 72 bp | TTCTATCACTACTTTGCTGCTGGAGAGACCTTTTGTTaGCCAACACTTGGTATTAGTACAATGCTCAATGTA | + |
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Preference number: 3 (lower is better) Translates to: FYHYFAAGETFC*PTLGISTMLNV Trigger: TACATTGAGCATTGTACTAATACCAAGTGTTGGGCAACAAAAGGTCTCTCCAGCAGCAAAGTAGTGATAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR GCA 72 bp | AGCAAGAACATAAAGAACAGAGTAGATTTTATCAATTaGAGTTTGCTCAAAGTTCATCTCCCTGGTAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: SKNIKNRVDFIN*SLLKVHLPGSV Trigger: CACACTACCAGGGAGATGAACTTTGAGCAAACTGCAATTGATAAAATCTACTCTGTTCTTTATGTTCTTGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS-3UTR GCA 90 bp | ACAAAACTTCCCCAACAGCAACCAGCTAAGATTAGATACTTGAGCCTGTGCTTCTTGCGCGCGATCCTCTaGGTCGTCTGCCTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TKLPQQQPAKIRYLSLCFLRAIL*VVCLLL Trigger: CAGCAGCAGGCAGACGACGCAGAGGATCGCGCGCAA...GAAGCACAGGCTCAAGTATCTAATCTTAGCTGGTTGCTGTTGGGGAAGTTTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003575.11 |
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| CDS-3UTR GCA 90 bp | AGCCTCACAAAACTTCCCCAACAGCAACCAGCTAAGATTAGATACTTGAGCCTGCTCCGCCCTCTCCTCTaGTCTCTTCAGCTCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: SLTKLPQQQPAKIRYLSLLRPLL*SLQLTL Trigger: GAGGGTGAGCTGAAGAGAGCAGAGGAGAGGGCGGAG...CAGGCTCAAGTATCTAATCTTAGCTGGTTGCTGTTGGGGAAGTTTTGTGAGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS-3UTR GCA 90 bp | TTCTTACAAAAGAGGAAGACAGGGCACACTCTCTGGAGTGGAGTTGGTGTTAAAGCCTCTTCCAGATTCTaGAGGGCTGTGGCCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FLQKRKTGHTLWSGVGVKASSRF*RAVASC Trigger: GCAGCTGGCCACAGCCCTGCAGAATCTGGAAGAGGC...TTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGTCTTCCTCTTTTGTAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003575.11 |
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| CDS-3UTR GCA 90 bp | TTCTTACAAAAGAGGAAGACAGGGCACACTCTCTGGAGTGGAGTTGGTGTTAAAGCGGTTGAGAGCGGCTaGATCTCCTTCAGCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: FLQKRKTGHTLWSGVGVKAVESG*ISFSFL Trigger: GAGAAAGCTGAAGGAGATGCAGCCGCTCTCAACCGC...TTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGTCTTCCTCTTTTGTAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003575.11 |
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| CDS-3UTR GCA 90 bp | TGGCAAAGTCAAGCTTCCATTTGTTGTTCCCTGAACAATGGAGATGAAGTTAAGCTCCGCCCTCTCCTCTaGTCTCTTCAGCTCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: WQSQASICCSLNNGDEVKLRPLL*SLQLTL Trigger: GAGGGTGAGCTGAAGAGAGCAGAGGAGAGGGCGGAG...CTTAACTTCATCTCCATTGTTCAGGGAACAACAAATGGAAGCTTGACTTTGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS-3UTR GCA 90 bp | AAAAGAGGAAGACAGGGCACACTCTCTGGAGTGGAGTTGGTGTTAAAACAGTACATCAGCAGCCTTCTCTaGCTCTTCCAGATTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: KRGRQGTLSGVELVLKQYISSLL*LFQILQ Trigger: CTGCAGAATCTGGAAGAGGCAGAGAAGGCTGCTGAT...GTACTGTTTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGTCTTCCTCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003575.11 |
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| CDS-3UTR GCA 90 bp | AGCCTCACAAAACTTCCCCAACAGCAACCAGCTAAGATTAGATACTTGAGCCTGAGAAACTGTCCTTTCTaGAAACTCAGCTCGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SLTKLPQQQPAKIRYLSLRNCPF*KLSSGL Trigger: GAGACCCGAGCTGAGTTTGCAGAAAGGACAGTTTCT...CAGGCTCAAGTATCTAATCTTAGCTGGTTGCTGTTGGGGAAGTTTTGTGAGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS-3UTR GCA 90 bp | TTCTTACAAAAGAGGAAGACAGGGCACACTCTCTGGAGTGGAGTTGGTGTTAAAAGAAACTGTCCTTTCTaGAAACTCAGCTCGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: FLQKRKTGHTLWSGVGVKRNCPF*KLSSGL Trigger: GAGACCCGAGCTGAGTTTGCAGAAAGGACAGTTTCT...TTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGTCTTCCTCTTTTGTAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS-3UTR GCA 90 bp | TTTTCTATCACTACTTTGCTGCTGGAGAGACCTTTTGTTGCCCAACACTTGGTATTGGCTTCTTTGAGCTaGATCTCCAGGATCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: FSITTLLLERPFVAQHLVLASLS*ISRISI Trigger: GATGGAGATCCTGGAGATGCAGCTCAAAGAAGCCAA...TACCAAGTGTTGGGCAACAAAAGGTCTCTCCAGCAGCAAAGTAGTGATAGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS-3UTR CCA 90 bp | AAAAGAGGAAGACAGGGCACACTCTCTGGAGTGGAGTTGGTGTTAAAACAGTACTTTCCTCATCTTTCATaGCTCGGTTCTCTATTACCT | + |
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Preference number: 4 (lower is better) Translates to: KRGRQGTLSGVELVLKQYFPHLS*LGSLLP Trigger: AGGTAATAGAGAACCGAGCCATGAAAGATGAGGAAA...GTACTGTTTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGTCTTCCTCTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS-3UTR CCA 90 bp | TATATCATTAGACCACAGCAGAAAAGTCCTGGAATAAGACGCTTGCTCCTCAGATTTCCTCATCTTTCATaGCTCGGTTCTCTATTACCT | + |
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Preference number: 4 (lower is better) Translates to: YIIRPQQKSPGIRRLLLRFPHLS*LGSLLP Trigger: AGGTAATAGAGAACCGAGCCATGAAAGATGAGGAAA...TCTGAGGAGCAAGCGTCTTATTCCAGGACTTTTCTGCTGTGGTCTAATGATATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| 3UTR CAA 72 bp | TGCCCAACACTTGGTATTAGTACAATGCTCAATGTATaGAAGGCAACTAAGCCTTTTTATTATTTGAGACAG | + |
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Preference number: 4 (lower is better) Translates to: CPTLGISTMLNV*KATKPFYYLRQ Trigger: CTGTCTCAAATAATAAAAAGGCTTAGTTGCCTTCAATACATTGAGCATTGTACTAATACCAAGTGTTGGGCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS-3UTR CAA 90 bp | TCTTACAAAAGAGGAAGACAGGGCACACTCTCTGGAGTGGAGTTGGTGTTAAAATTCCTCCTCCAGCAGTaGGATGCGGCGGTTGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: SYKRGRQGTLSGVELVLKFLLQQ*DAAVES Trigger: GCTCTCAACCGCCGCATCCAACTGCTGGAGGAGGAA...TTTTAACACCAACTCCACTCCAGAGAGTGTGCCCTGTCTTCCTCTTTTGTAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003575.11 |
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| CDS-3UTR CAA 90 bp | TATATCATTAGACCACAGCAGAAAAGTCCTGGAATAAGACGCTTGCTCCTCAGATTGTTAGTTACATTCTaGAGCTCTTCTTCCAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: YIIRPQQKSPGIRRLLLRLLVTF*SSSSRS Trigger: TGACCTGGAAGAAGAGCTCAAGAATGTAACTAACAA...TCTGAGGAGCAAGCGTCTTATTCCAGGACTTTTCTGCTGTGGTCTAATGATATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003575.11 ENSMUST00000238492.2 |
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| CDS GCA 72 bp | TTCTCGCGCCGCTCGCGCTCGCCATCCAGTTCGCGCTaGAGGCCTTGCGCGCGATCCTCTGCGTCGTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: FSRRSRSPSSSR*RPCARSSASSA Trigger: GGCAGACGACGCAGAGGATCGCGCGCAAGGCCTGCAGCGCGAACTGGATGGCGAGCGCGAGCGGCGCGAGAA 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003575.11 |
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