Pregenerated sensors for TPM3-RS7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058126

Ensembl transcript IDs: ENSMUST00000072359.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	TTTTTGGCTAACTTCCTAGAATCCCCCTGTTGTTTGGCTAAGAGTTaGTGCAGAGCACTGAGGTCTCCCACAGTGGAGCCTGCCTGGGCT	+
Preference number: 1 (lower is better) Translates to: FLANFLESPCCLAKS*CRALRSPTVEPAWA Trigger: AGCCCAGGCAGGCTCCACTGTGGGAGACCTCAGTGCTCTGCACCAACTCTTAGCCAAACAACAGGGGGATTCTAGGAAGTTAGCCAAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000072359.8
3UTR-3UTR TCA 90 bp	ACAAGCCAGGAATCTGCAGGGTGCCCACCTAACAGGCCGAGAAGAAACCACCTGGCTCAGGGCTGGGGCTaGACGGTAGCACGCTTGCCT	+
Preference number: 2 (lower is better) Translates to: TSQESAGCPPNRPRRNHLAQGWG*TVARLP Trigger: AGGCAAGCGTGCTACCGTTCAGCCCCAGCCCTGAGC...CAGGTGGTTTCTTCTCGGCCTGTTAGGTGGGCACCCTGCAGATTCCTGGCTTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072359.8
3UTR-3UTR GCA 90 bp	TCTCCAGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGAGCCTGCCTGGGCTCTaGTGGCTCTCAGGAAGGCAG	+
Preference number: 2 (lower is better) Translates to: SPVGRSEESTNKPGICRVSLPGL*WLSGRQ Trigger: CTGCCTTCCTGAGAGCCAGCAGAGCCCAGGCAGGCT...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACTGGAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072359.8
3UTR CAA 90 bp	AGGCCGAGAAGAAACCACCTGAACATGGCAATTGGGTGGGGACACTaGAAAGATCAGCACACCACTAGCTCACAGACTGCAAAGAATTCT	+
Preference number: 2 (lower is better) Translates to: RPRRNHLNMAIGWGH*KDQHTTSSQTAKNS Trigger: AGAATTCTTTGCAGTCTGTGAGCTAGTGGTGTGCTGATCTTTCAAGTGTCCCCACCCAATTGCCATGTTCAGGTGGTTTCTTCTCGGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072359.8
3UTR-3UTR CAA 90 bp	ACAAGCCAGGAATCTGCAGGGTGCCCACCTAACAGGCCGAGAAGAAACCACCTGAGAGCTGCGACAAGTTaGGGCTCAGGGCTGGGGCTG	+
Preference number: 3 (lower is better) Translates to: TSQESAGCPPNRPRRNHLRAATS*GSGLGL Trigger: CAGCCCCAGCCCTGAGCCCAAACTTGTCGCAGCTCT...CAGGTGGTTTCTTCTCGGCCTGTTAGGTGGGCACCCTGCAGATTCCTGGCTTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072359.8
CDS-3UTR GCA 90 bp	TCTCCAGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCTCGGCCCTTTCCTCTaGATCATCAGCTTGCTGCTG	+
Preference number: 4 (lower is better) Translates to: SPVGRSEESTNKPGICRVLGPFL*IISLLL Trigger: CAGCAGCAAGCTGATGATGCAGAGGAAAGGGCCGAG...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACTGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072359.8