Pregenerated sensors for TPM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027940Ensembl transcript IDs: ENSMUST00000029549.16, ENSMUST00000118566.8, ENSMUST00000119158.8, ENSMUST00000119570.8, ENSMUST00000121503.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCACAGTGGAGCCTGCCTaGGCTCTGCTGGCTCTCAGG | + |
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Preference number: 2 (lower is better) Translates to: SGRSVGGEYKQARNLQGATVEPA*ALLALR Trigger: CCTGAGAGCCAGCAGAGCCCAGGCAGGCTCCACTGT...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCACATGCATGAGGCCCTaGGAGGTGGGGCTGTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: SGRSVGGEYKQARNLQGATCMRP*EVGLSQ Trigger: CTGAGACAGCCCCACCTCCCAGGGCCTCATGCATGT...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGCCCTGGGAGGTGGGGCTGTCTCAGACGTCTCATTGTCTTATTTGGTCACAACAGTGGAGCCTGCCTaGGCTCTGCTGGCTCTCAGG | + |
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Preference number: 2 (lower is better) Translates to: EALGGGAVSDVSLSYLVTTVEPA*ALLALR Trigger: CCTGAGAGCCAGCAGAGCCCAGGCAGGCTCCACTGT...TGTGACCAAATAAGACAATGAGACGTCTGAGACAGCCCCACCTCCCAGGGCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | AAACAGTTGCACTGCGGGGTTCTCTTTCTCCGGTCGGTCGGTCGGAGGAGAGTAACATGCATGAGGCCCTaGGAGGTGGGGCTGTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: KQLHCGVLFLRSVGRRRVTCMRP*EVGLSQ Trigger: CTGAGACAGCCCCACCTCCCAGGGCCTCATGCATGT...TACTCTCCTCCGACCGACCGACCGGAGAAAGAGAACCCCGCAGTGCAACTGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGGGTAGTAAAAGGGGGTaGCAGGAGGGAAAGCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: SPVGRSEESTNKPGICRVGSKRG*QEGKQP Trigger: AGGCTGCTTTCCCTCCTGCCACCCCCTTTTACTACC...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCTTCAGCCCCTCCAACTaGAACTCTGGGAAAAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: SGRSVGGEYKQARNLQGAFSPSN*NSGKRL Trigger: CAGCCTTTTCCCAGAGTTCCAGTTGGAGGGGCTGAA...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGCCCTGGGAGGTGGGGCTGTCTCAGACGTCTCATTGTCTTATTTGGTCACAGGTAGTAAAAGGGGGTaGCAGGAGGGAAAGCAGCCT | + |
|
Preference number: 2 (lower is better) Translates to: EALGGGAVSDVSLSYLVTGSKRG*QEGKQP Trigger: AGGCTGCTTTCCCTCCTGCCACCCCCTTTTACTACC...TGTGACCAAATAAGACAATGAGACGTCTGAGACAGCCCCACCTCCCAGGGCCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR GCA 90 bp | GTGAGAAGGCTGCAGCTAAGGGCTTCCAAGTTCCGCACTAAATCTCCCAGGCCCAGGCAATCAGCTTTTTaGTGGGTCCAGGTCAGTGGT | + |
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Preference number: 2 (lower is better) Translates to: VRRLQLRASKFRTKSPRPRQSAF*WVQVSG Trigger: ACCACTGACCTGGACCCAGCAAAAAGCTGATTGCCT...GGGCCTGGGAGATTTAGTGCGGAACTTGGAAGCCCTTAGCTGCAGCCTTCTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGTGTTTGGCTAAGAGTTaGTGCAGAGCACTGAGGTCT | + |
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Preference number: 2 (lower is better) Translates to: SPVGRSEESTNKPGICRVCLAKS*CRALRS Trigger: AGACCTCAGTGCTCTGCACCAACTCTTAGCCAAACA...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCAACATGGCAATTGGGTaGGGACACTTGAAAGATCAG | + |
|
Preference number: 2 (lower is better) Translates to: SGRSVGGEYKQARNLQGANMAIG*GHLKDQ Trigger: CTGATCTTTCAAGTGTCCCCACCCAATTGCCATGTT...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCAGCGGCAGAAGTGCTTaGAATGTTAAAAATGGTTGC | + |
|
Preference number: 2 (lower is better) Translates to: SGRSVGGEYKQARNLQGASGRSA*NVKNGC Trigger: GCAACCATTTTTAACATTCCAAGCACTTCTGCCGCT...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | GGACACTTGAAAGATCAGCACACCACTAGCTCACAGACTGCAAAGAATTCTCACACATGCATGAGGCCCTaGGAGGTGGGGCTGTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: GHLKDQHTTSSQTAKNSHTCMRP*EVGLSQ Trigger: CTGAGACAGCCCCACCTCCCAGGGCCTCATGCATGT...GTGAGAATTCTTTGCAGTCTGTGAGCTAGTGGTGTGCTGATCTTTCAAGTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGCCCTGGGAGGTGGGGCTGTCTCAGACGTCTCATTGTCTTATTTGGTCACAAGCGGCAGAAGTGCTTaGAATGTTAAAAATGGTTGC | + |
|
Preference number: 2 (lower is better) Translates to: EALGGGAVSDVSLSYLVTSGRSA*NVKNGC Trigger: GCAACCATTTTTAACATTCCAAGCACTTCTGCCGCT...TGTGACCAAATAAGACAATGAGACGTCTGAGACAGCCCCACCTCCCAGGGCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | AATTGTTCAAAGACACCAAAGCTGAAAACCTTCACAGCCCAGAACAGTTTTTGTCTGCCTGGGCTCTGCTaGCTCTCAGGAAGGCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: NCSKTPKLKTFTAQNSFCLPGLC*LSGRQA Trigger: GGCCTGCCTTCCTGAGAGCCAGCAGAGCCCAGGCAG...ACAAAAACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | TTGTTCAAAGACACCAAAGCTGAAAACCTTCACAGCCCAGAACAGTTTTTGTTTCTGCCTGGGCTCTGCTaGCTCTCAGGAAGGCAGGCC | + |
|
Preference number: 2 (lower is better) Translates to: LFKDTKAENLHSPEQFLFLPGLC*LSGRQA Trigger: GGCCTGCCTTCCTGAGAGCCAGCAGAGCCCAGGCAG...AAACAAAAACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | AATGTGCTGCTCCAAGCGGCAGAAGTGCTTGGAATGTTAAAAATGGTTGCTAAGGGTAGTAAAAGGGGGTaGCAGGAGGGAAAGCAGCCT | + |
|
Preference number: 2 (lower is better) Translates to: NVLLQAAEVLGMLKMVAKGSKRG*QEGKQP Trigger: AGGCTGCTTTCCCTCCTGCCACCCCCTTTTACTACC...CTTAGCAACCATTTTTAACATTCCAAGCACTTCTGCCGCTTGGAGCAGCACATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | TCCATTAGGCTAAAATGTGCTGCTCCAAGCGGCAGAAGTGCTTGGAATGTTAAATTCAGCCCCTCCAACTaGAACTCTGGGAAAAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: SIRLKCAAPSGRSAWNVKFSPSN*NSGKRL Trigger: CAGCCTTTTCCCAGAGTTCCAGTTGGAGGGGCTGAA...TTTAACATTCCAAGCACTTCTGCCGCTTGGAGCAGCACATTTTAGCCTAATGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | GGACACTTGAAAGATCAGCACACCACTAGCTCACAGACTGCAAAGAATTCTCACTGTTTGGCTAAGAGTTaGTGCAGAGCACTGAGGTCT | + |
|
Preference number: 2 (lower is better) Translates to: GHLKDQHTTSSQTAKNSHCLAKS*CRALRS Trigger: AGACCTCAGTGCTCTGCACCAACTCTTAGCCAAACA...GTGAGAATTCTTTGCAGTCTGTGAGCTAGTGGTGTGCTGATCTTTCAAGTGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CCA 90 bp | TTTATTGTTAGAAAATATCCATGCACGAGAGCAAGCCCTACAGTCAGTGTACAGCAATCAGCTTTTTGCTaGGTCCAGGTCAGTGGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: FIVRKYPCTRASPTVSVQQSAFC*VQVSGV Trigger: CACACCACTGACCTGGACCCAGCAAAAAGCTGATTG...CTGTACACTGACTGTAGGGCTTGCTCTCGTGCATGGATATTTTCTAACAATAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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| 3UTR-3UTR CCA 90 bp | TTGTTCAAAGACACCAAAGCTGAAAACCTTCACAGCCCAGAACAGTTTTTGTTTAGCGGCAGAAGTGCTTaGAATGTTAAAAATGGTTGC | + |
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Preference number: 2 (lower is better) Translates to: LFKDTKAENLHSPEQFLFSGRSA*NVKNGC Trigger: GCAACCATTTTTAACATTCCAAGCACTTCTGCCGCT...AAACAAAAACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CAA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCATTGGGTGGGGACACTaGAAAGATCAGCACACCACT | + |
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Preference number: 3 (lower is better) Translates to: SGRSVGGEYKQARNLQGAIGWGH*KDQHTT Trigger: AGTGGTGTGCTGATCTTTCAAGTGTCCCCACCCAAT...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CAA 90 bp | TCTCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGATTGGGTGGGGACACTaGAAAGATCAGCACACCACT | + |
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Preference number: 3 (lower is better) Translates to: SPVGRSEESTNKPGICRVIGWGH*KDQHTT Trigger: AGTGGTGTGCTGATCTTTCAAGTGTCCCCACCCAAT...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR GCA 72 bp | TTCCTAGAATCCCCCTGTTGTTTGGCTAAGAGTTGGTaGAGAGCACTGAGGTCTCCCACAGTGGAGCCTGCC | + |
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Preference number: 3 (lower is better) Translates to: FLESPCCLAKSW*RALRSPTVEPA Trigger: GGCAGGCTCCACTGTGGGAGACCTCAGTGCTCTGCACCAACTCTTAGCCAAACAACAGGGGGATTCTAGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CAA 90 bp | AAACAGTTGCACTGCGGGGTTCTCTTTCTCCGGTCGGTCGGTCGGAGGAGAGTAATTGGGTGGGGACACTaGAAAGATCAGCACACCACT | + |
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Preference number: 3 (lower is better) Translates to: KQLHCGVLFLRSVGRRRVIGWGH*KDQHTT Trigger: AGTGGTGTGCTGATCTTTCAAGTGTCCCCACCCAAT...TACTCTCCTCCGACCGACCGACCGGAGAAAGAGAACCCCGCAGTGCAACTGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR CCA 72 bp | AACTTCCTAGAATCCCCCTGTTGTTTGGCTAAGAGTTaGTGCAGAGCACTGAGGTCTCCCACAGTGGAGCCT | + |
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Preference number: 3 (lower is better) Translates to: NFLESPCCLAKS*CRALRSPTVEP Trigger: AGGCTCCACTGTGGGAGACCTCAGTGCTCTGCACCAACTCTTAGCCAAACAACAGGGGGATTCTAGGAAGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CAA 90 bp | GAGGCCCTGGGAGGTGGGGCTGTCTCAGACGTCTCATTGTCTTATTTGGTCACACGTATCACAACTGCATaGAAGACACTGCGTTGTGCT | + |
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Preference number: 3 (lower is better) Translates to: EALGGGAVSDVSLSYLVTRITTA*KTLRCA Trigger: AGCACAACGCAGTGTCTTCAATGCAGTTGTGATACG...TGTGACCAAATAAGACAATGAGACGTCTGAGACAGCCCCACCTCCCAGGGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CAA 90 bp | GGACACTTGAAAGATCAGCACACCACTAGCTCACAGACTGCAAAGAATTCTCACAGAGCTGCGATAAGTTaGGGCTCAGGGCTGGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: GHLKDQHTTSSQTAKNSHRAAIS*GSGLGL Trigger: CAGCCCCAGCCCTGAGCCCAAACTTATCGCAGCTCT...GTGAGAATTCTTTGCAGTCTGTGAGCTAGTGGTGTGCTGATCTTTCAAGTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CAA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCGAACAGTTTTTGTTTTaGGCTAACTTCCTAGAATCC | + |
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Preference number: 3 (lower is better) Translates to: SGRSVGGEYKQARNLQGAEQFLF*ANFLES Trigger: GGATTCTAGGAAGTTAGCCAAAAACAAAAACTGTTC...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CAA 90 bp | TCTCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGGTCTCATTGTCTTATTaGGTCACATCTGATGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: SPVGRSEESTNKPGICRVVSLSY*VTSDGK Trigger: TTTTCCATCAGATGTGACCAAATAAGACAATGAGAC...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR-3UTR CAA 90 bp | TCCATTAGGCTAAAATGTGCTGCTCCAAGCGGCAGAAGTGCTTGGAATGTTAAACGTATCACAACTGCATaGAAGACACTGCGTTGTGCT | + |
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Preference number: 3 (lower is better) Translates to: SIRLKCAAPSGRSAWNVKRITTA*KTLRCA Trigger: AGCACAACGCAGTGTCTTCAATGCAGTTGTGATACG...TTTAACATTCCAAGCACTTCTGCCGCTTGGAGCAGCACATTTTAGCCTAATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| CDS-3UTR TCA 90 bp | CCAAGGCCCTCCAGCCCTAAGGCTGTAGGAACCAGCCAGGCTGACCCAAATGGAGAGTACTTCTCCGCCTaGGCCTCAAGAGACTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: PRPSSPKAVGTSQADPNGEYFSA*ASRDLR Trigger: CCTCAAGTCTCTTGAGGCTCAGGCGGAGAAGTACTC...TCCATTTGGGTCAGCCTGGCTGGTTCCTACAGCCTTAGGGCTGGAGGGCCTTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR GCA 90 bp | TCTCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGGCTTCCTCCAGCTTCTaGAAAGCAGTGGCAAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: SPVGRSEESTNKPGICRVASSSF*KAVARR Trigger: GCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGC...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| CDS-3UTR GCA 90 bp | GCTGTAGGAACCAGCCAGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGCTTCCTCCAGCTTCTaGAAAGCAGTGGCAAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: AVGTSQADPNGIQSEWGVASSSF*KAVARR Trigger: GCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGC...AACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGGTTCCTACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR GCA 90 bp | GGAACCAGCCAGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGGGTTCTGCTCAGCTTCAGCTTaGTCAGCTCGGTCCAGAACA | + |
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Preference number: 4 (lower is better) Translates to: GTSQADPNGIQSEWGVGFCSASA*SARSRT Trigger: TGTTCTGGACCGAGCTGAGCAAGCTGAAGCTGAGCA...GAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR TCA 90 bp | GCAATCAGCTTTTTGCTGGGTCCAGGTCAGTGGTGTGGGTTTACTGGGCATCAGGAGTACTTCTCCGCCTaGGCCTCAAGAGACTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: AISFLLGPGQWCGFTGHQEYFSA*ASRDLR Trigger: CCTCAAGTCTCTTGAGGCTCAGGCGGAGAAGTACTC...CTGATGCCCAGTAAACCCACACCACTGACCTGGACCCAGCAAAAAGCTGATTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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| CDS-3UTR GCA 90 bp | CCAAAGGTGTTCAGCCCCTCCAACTGGAACTCTGGGAAAAGGCTGACACAGTTTGCTTCCTCCAGCTTCTaGAAAGCAGTGGCAAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: PKVFSPSNWNSGKRLTQFASSSF*KAVARR Trigger: GCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGC...AAACTGTGTCAGCCTTTTCCCAGAGTTCCAGTTGGAGGGGCTGAACACCTTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| CDS-3UTR GCA 90 bp | GTCAGTGTACAGGTGAGAAGGCTGCAGCTAAGGGCTTCCAAGTTCCGCACTAAAGCTTCCTCCAGCTTCTaGAAAGCAGTGGCAAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: VSVQVRRLQLRASKFRTKASSSF*KAVARR Trigger: GCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGC...TTTAGTGCGGAACTTGGAAGCCCTTAGCTGCAGCCTTCTCACCTGTACACTGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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| CDS-3UTR GCA 90 bp | TCTCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGTCTTCTGCCTGTTTCTaGTCAGCTTCAGCTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SPVGRSEESTNKPGICRVSSACF*SASACS Trigger: TGAGCAAGCTGAAGCTGAGCAGAAACAGGCAGAAGA...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119570.8 |
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| CDS-3UTR GCA 90 bp | AGGCCCTCCAGCCCTAAGGCTGTAGGAACCAGCCAGGCTGACCCAAATGGAATCTCTTCTGCCTGTTTCTaGTCAGCTTCAGCTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: RPSSPKAVGTSQADPNGISSACF*SASACS Trigger: TGAGCAAGCTGAAGCTGAGCAGAAACAGGCAGAAGA...GATTCCATTTGGGTCAGCCTGGCTGGTTCCTACAGCCTTAGGGCTGGAGGGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR GCA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCCATCCTCTAGCTGCTTaGTTCTTTCTTCTGCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: SGRSVGGEYKQARNLQGAHPLAA*FFLLPV Trigger: AACAGGCAGAAGAAAGAAGCAAGCAGCTAGAGGATG...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119570.8 |
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| CDS-3UTR GCA 90 bp | CCAGCCAGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGGGTTCCCCACATCCTCTAGCTGCTTaGTTCTTTCTTCTGCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: PARLTQMESRASGVLGSPHPLAA*FFLLPV Trigger: AACAGGCAGAAGAAAGAAGCAAGCAGCTAGAGGATG...TGGGGAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR GCA 90 bp | CCAGCCAGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGGGTTCCCCACCTTTCAGCTTCTTCTaGATGGTTGCTAGTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: PARLTQMESRASGVLGSPPFSFF*MVASSS Trigger: GGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGG...TGGGGAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR GCA 90 bp | TCTCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCTTTCAGCTTCTTCTaGATGGTTGCTAGTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: SPVGRSEESTNKPGICRVPFSFF*MVASSS Trigger: GGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGG...CACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119570.8 |
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| CDS-3UTR CCA 90 bp | GGAACCAGCCAGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGGGTTCTCAGCTTCTTCTGCATaGTTGCTAGTTCATCCTCTA | + |
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Preference number: 4 (lower is better) Translates to: GTSQADPNGIQSEWGVGFSASSA*LLVHPL Trigger: TAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGA...GAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGGTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR GCA 90 bp | CAACTTGGTGGGGGCTGCCAGGAAATCAACGGTAGTCTAGCTGCCCTCATTAAACAGTCACAAAGACCATaGAGCGTTAGCTTCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: QLGGGCQEINGSLAALIKQSQRP*SVSFSS Trigger: TGAGCTGAAGCTAACGCTGCATGGTCTTTGTGACTG...TTTAATGAGGGCAGCTAGACTACCGTTGATTTCCTGGCAGCCCCCACCAAGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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| 3UTR CAA 72 bp | TTGTTTTTGGCTAACTTCCTAGAATCCCCCTGTTGTTaGGCTAAGAGTTGGTGCAGAGCACTGAGGTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: LFLANFLESPCC*AKSWCRALRSP Trigger: GGGAGACCTCAGTGCTCTGCACCAACTCTTAGCCAAACAACAGGGGGATTCTAGGAAGTTAGCCAAAAACAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| 3UTR CAA 72 bp | GAGGCCCTGGGAGGTGGGGCTGTCTCAGACGTCTCATaGTCTTATTTGGTCACATCTGATGGAAAAAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: EALGGGAVSDVS*SYLVTSDGKSK Trigger: TTTACTTTTTCCATCAGATGTGACCAAATAAGACAATGAGACGTCTGAGACAGCCCCACCTCCCAGGGCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| CDS-3UTR GCA 90 bp | AATTGTTCAAAGACACCAAAGCTGAAAACCTTCACAGCCCAGAACAGTTTTTGTGCTTCCTCCAGCTTCTaGAAAGCAGTGGCAAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: NCSKTPKLKTFTAQNSFCASSSF*KAVARR Trigger: GCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGC...ACAAAAACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029549.16 ENSMUST00000118566.8 ENSMUST00000119570.8 |
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| CDS-3UTR TCA 90 bp | AATTGTTCAAAGACACCAAAGCTGAAAACCTTCACAGCCCAGAACAGTTTTTGTGAGTACTTCTCCGCCTaGGCCTCAAGAGACTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: NCSKTPKLKTFTAQNSFCEYFSA*ASRDLR Trigger: CCTCAAGTCTCTTGAGGCTCAGGCGGAGAAGTACTC...ACAAAAACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118566.8 |
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| CDS-3UTR GCA 90 bp | AATTGTTCAAAGACACCAAAGCTGAAAACCTTCACAGCCCAGAACAGTTTTTGTTGCTCAGCTTCAGCTTaGTCAGCTCGGTCCAGAACA | + |
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Preference number: 4 (lower is better) Translates to: NCSKTPKLKTFTAQNSFCCSASA*SARSRT Trigger: TGTTCTGGACCGAGCTGAGCAAGCTGAAGCTGAGCA...ACAAAAACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119570.8 |
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| CDS-3UTR CCA 90 bp | TTGTTCAAAGACACCAAAGCTGAAAACCTTCACAGCCCAGAACAGTTTTTGTTTTCAGCTTCTTCTGCATaGTTGCTAGTTCATCCTCTA | + |
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Preference number: 4 (lower is better) Translates to: LFKDTKAENLHSPEQFLFSASSA*LLVHPL Trigger: TAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGA...AAACAAAAACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119570.8 |
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| CDS-3UTR CAA 90 bp | AGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGGGTTCCCCAAGGAAACTGCTCAGCTTCAGCTaGCTCAGCTCGGTCCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: RLTQMESRASGVLGSPRKLLSFS*LSSVQN Trigger: GTTCTGGACCGAGCTGAGCAAGCTGAAGCTGAGCAG...TTTCCTTGGGGAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR CAA 90 bp | TCCGGTCGGTCGGTCGGAGGAGAGTACAAACAAGCCAGGAATCTGCAGGGTGCCTCATCCTCTAGCTGCTaGCTTCTTTCTTCTGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: SGRSVGGEYKQARNLQGASSSSC*LLSSAC Trigger: ACAGGCAGAAGAAAGAAGCAAGCAGCTAGAGGATGA...GGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119570.8 |
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| CDS-3UTR CAA 90 bp | CCAGCCAGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGGGTTCCCCATCATCCTCTAGCTGCTaGCTTCTTTCTTCTGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: PARLTQMESRASGVLGSPSSSSC*LLSSAC Trigger: ACAGGCAGAAGAAAGAAGCAAGCAGCTAGAGGATGA...TGGGGAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR CAA 90 bp | GGAACCAGCCAGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGGGTTCTCAAGAGACTTGAGGTaGTTGGTGACATTCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: GTSQADPNGIQSEWGVGFSRDLR*LVTFFS Trigger: GCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGA...GAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGGTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR CAA 90 bp | GAGGCCCTGGGAGGTGGGGCTGTCTCAGACGTCTCATTGTCTTATTTGGTCACAGCTTCTTCTGCATGGTaGCTAGTTCATCCTCTAGCT | + |
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Preference number: 5 (lower is better) Translates to: EALGGGAVSDVSLSYLVTASSAW*LVHPLA Trigger: AGCTAGAGGATGAACTAGCAACCATGCAGAAGAAGC...TGTGACCAAATAAGACAATGAGACGTCTGAGACAGCCCCACCTCCCAGGGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119570.8 |
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| CDS-3UTR CAA 90 bp | AGGCTGACCCAAATGGAATCCAGAGCGAGTGGGGTGTTGGGTTCCCCAAGGAAAAGAGACTTGAGGTTGTaGGTGACATTCTTCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RLTQMESRASGVLGSPRKRDLRL*VTFFSS Trigger: GGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCT...TTTCCTTGGGGAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000121503.8 |
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| CDS-3UTR CAA 90 bp | GTGAGAAGGCTGCAGCTAAGGGCTTCCAAGTTCCGCACTAAATCTCCCAGGCCCTCAAGAGACTTGAGGTaGTTGGTGACATTCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: VRRLQLRASKFRTKSPRPSRDLR*LVTFFS Trigger: GCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGA...GGGCCTGGGAGATTTAGTGCGGAACTTGGAAGCCCTTAGCTGCAGCCTTCTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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| CDS-3UTR CAA 90 bp | AATGTGCTGCTCCAAGCGGCAGAAGTGCTTGGAATGTTAAAAATGGTTGCTAAGCTGCTCAGCTTCAGCTaGCTCAGCTCGGTCCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: NVLLQAAEVLGMLKMVAKLLSFS*LSSVQN Trigger: GTTCTGGACCGAGCTGAGCAAGCTGAAGCTGAGCAG...CTTAGCAACCATTTTTAACATTCCAAGCACTTCTGCCGCTTGGAGCAGCACATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119570.8 |
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| CDS-3UTR CAA 90 bp | CCAAAGGTGTTCAGCCCCTCCAACTGGAACTCTGGGAAAAGGCTGACACAGTTTAGAGACTTGAGGTTGTaGGTGACATTCTTCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: PKVFSPSNWNSGKRLTQFRDLRL*VTFFSS Trigger: GGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCT...AAACTGTGTCAGCCTTTTCCCAGAGTTCCAGTTGGAGGGGCTGAACACCTTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118566.8 |
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| CDS-3UTR CAA 90 bp | TTAAAAGGCAATCAGCTTTTTGCTGGGTCCAGGTCAGTGGTGTGGGTTTACTGGAGAGACTTGAGGTTGTaGGTGACATTCTTCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: LKGNQLFAGSRSVVWVYWRDLRL*VTFFSS Trigger: GGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCT...CCAGTAAACCCACACCACTGACCTGGACCCAGCAAAAAGCTGATTGCCTTTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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| CDS-3UTR CAA 90 bp | AAAAGCAACTTGCTTAGGGCGAACAGTAACGGTTTAAAAGGCAATCAGCTTTTTGCGGTTTCGCTCAAGTaGGCTGTAGAGACGCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: KSNLLRANSNGLKGNQLFAVSLK*AVETLF Trigger: GAAGAGCGTCTCTACAGCCAACTTGAGCGAAACCGC...AAAAAGCTGATTGCCTTTTAAACCGTTACTGTTCGCCCTAAGCAAGTTGCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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| CDS-3UTR CAA 90 bp | TTGTTCAAAGACACCAAAGCTGAAAACCTTCACAGCCCAGAACAGTTTTTGTTTTCAAGAGACTTGAGGTaGTTGGTGACATTCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: LFKDTKAENLHSPEQFLFSRDLR*LVTFFS Trigger: GCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGA...AAACAAAAACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000118566.8 |
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| CDS CAA 72 bp | CTTCAGCTCATTAGAAAGCAGGCGGTTTCGCTCAAGTaGGCTGTAGAGACGCTCTTCCAGGTCATCAATGGT | + |
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Preference number: 6 (lower is better) Translates to: LQLIRKQAVSLK*AVETLFQVING Trigger: ACCATTGATGACCTGGAAGAGCGTCTCTACAGCCAACTTGAGCGAAACCGCCTGCTTTCTAATGAGCTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119158.8 |
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