Pregenerated sensors for TPI1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023456Ensembl transcript IDs: ENSMUST00000172132.10, ENSMUST00000239432.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGTCTCATGTATACCGAATTCAGACCCGAAAGCTCTGAATTTCTaGATCAGACATCCAGTAGAACTTGGGAGTGAAGCTAGAGCCAAG | + |
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Preference number: 1 (lower is better) Translates to: RVSCIPNSDPKALNF*IRHPVELGSEARAK Trigger: CTTGGCTCTAGCTTCACTCCCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTCGGTATACATGAGACCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR TCA 90 bp | ACATGTAGGATGGTTCACAAACACAATACAGGGGCTTTGGCACCGTGGGGGAGGCAGACCCGAAAGCTCTaGATTTCTGCATCAGACATC | + |
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Preference number: 2 (lower is better) Translates to: TCRMVHKHNTGALAPWGRQTRKL*ISASDI Trigger: GATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTG...CCTCCCCCACGGTGCCAAAGCCCCTGTATTGTGTTTGTGAACCATCCTACATGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR CCA 90 bp | CCCACAAAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATGGTTCACACAGGAGGGTACAGCGTaGATTAGGCCACAAGATGGG | + |
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Preference number: 2 (lower is better) Translates to: PTKLRPRCLFPLHVGWFTQEGTA*IRPQDG Trigger: CCCATCTTGTGGCCTAATCCACGCTGTACCCTCCTG...TGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTTTGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR TCA 90 bp | CACAAAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATGGTTCACAAAAGTGACAGGCCAAAGTaGCACGAAGCCCACTTCCTG | + |
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Preference number: 2 (lower is better) Translates to: HKAQAQVFISLTCRMVHKSDRPK*HEAHFL Trigger: CAGGAAGTGGGCTTCGTGTCACTTTGGCCTGTCACT...TTTGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR TCA 90 bp | CCCACAAAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATGGTTCACAACAAGATGGGGCAGATaGTGTCATCAGAAGCATGTG | + |
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Preference number: 2 (lower is better) Translates to: PTKLRPRCLFPLHVGWFTTRWGR*CHQKHV Trigger: CACATGCTTCTGATGACATCATCTGCCCCATCTTGT...TGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTTTGTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGGAGTGAAGCTAGAAGTGACAGGCCAAAGTaGCACGAAGCCCACTTCCTG | + |
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Preference number: 2 (lower is better) Translates to: KALNFCIRHPVELGSEARSDRPK*HEAHFL Trigger: CAGGAAGTGGGCTTCGTGTCACTTTGGCCTGTCACT...TCTAGCTTCACTCCCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR TCA 90 bp | ATTATGACAACCCACAAAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGCCAAGGCCATCTAAGTaGCAGGCCAAAGTGACACGA | + |
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Preference number: 2 (lower is better) Translates to: IMTTHKAQAQVFISLTCRPRPSK*QAKVTR Trigger: TCGTGTCACTTTGGCCTGTCACTTAGATGGCCTTGG...CCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTTTGTGGGTTGTCATAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGGAGTGAAGCTAGACAGGAGGGTACAGCGTaGATTAGGCCACAAGATGGG | + |
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Preference number: 2 (lower is better) Translates to: KALNFCIRHPVELGSEARQEGTA*IRPQDG Trigger: CCCATCTTGTGGCCTAATCCACGCTGTACCCTCCTG...TCTAGCTTCACTCCCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR GCA 90 bp | ATTATGACAACCCACAAAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGGAAGCCCACTTCCTGTaGTCCAACCATGAGTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: IMTTHKAQAQVFISLTCREAHFL*SNHEFP Trigger: TGGAAACTCATGGTTGGAGCACAGGAAGTGGGCTTC...CCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTTTGTGGGTTGTCATAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR GCA 90 bp | GAATTCAGACCCGAAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGGAAGCCCACTTCCTGTaGTCCAACCATGAGTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: EFRPESSEFLHQTSSRTWEAHFL*SNHEFP Trigger: TGGAAACTCATGGTTGGAGCACAGGAAGTGGGCTTC...CCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR TCA 90 bp | GAATTCAGACCCGAAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGACAAGATGGGGCAGATaGTGTCATCAGAAGCATGTG | + |
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Preference number: 2 (lower is better) Translates to: EFRPESSEFLHQTSSRTWTRWGR*CHQKHV Trigger: CACATGCTTCTGATGACATCATCTGCCCCATCTTGT...CCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATGGTTCACAAACACACAGACCCGAAAGCTCTaGATTTCTGCATCAGACATC | + |
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Preference number: 2 (lower is better) Translates to: KLRPRCLFPLHVGWFTNTQTRKL*ISASDI Trigger: GATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTG...TGTGTTTGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR GCA 90 bp | AAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATGGTTCACAAACACAAAAGCTCTGAATTTCTaGATCAGACATCCAGTAGAA | + |
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Preference number: 2 (lower is better) Translates to: KLRPRCLFPLHVGWFTNTKALNF*IRHPVE Trigger: TTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTT...TGTGTTTGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR TCA 72 bp | AACTTGGGAGTGAAGCTAGAGCCAAGGCCATCTAAGTaGCAGGCCAAAGTGACACGAAGCCCACTTCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: NLGVKLEPRPSK*QAKVTRSPLPV Trigger: CACAGGAAGTGGGCTTCGTGTCACTTTGGCCTGTCACTTAGATGGCCTTGGCTCTAGCTTCACTCCCAAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR-3UTR CAA 90 bp | CCCACAAAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATGGTTCACATCACTAGGAGCCACCTaGGTGACAGTTGATTCTACC | + |
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Preference number: 3 (lower is better) Translates to: PTKLRPRCLFPLHVGWFTSLGAT*VTVDST Trigger: GGTAGAATCAACTGTCACCAAGGTGGCTCCTAGTGA...TGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTTTGTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR TCA 72 bp | AAAGTGACACGAAGCCCACTTCCTGTGCTCCAACCATaGGTTTCCAGCCCAAACCAATGGAAGGTGATTTCA | + |
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Preference number: 3 (lower is better) Translates to: KVTRSPLPVLQP*VSSPNQWKVIS Trigger: TGAAATCACCTTCCATTGGTTTGGGCTGGAAACTCATGGTTGGAGCACAGGAAGTGGGCTTCGTGTCACTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR CCA 72 bp | CTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATaGTTCACAAACACAATACAGGGGCTTTGGCACCGT | + |
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Preference number: 3 (lower is better) Translates to: LRPRCLFPLHVG*FTNTIQGLWHR Trigger: ACGGTGCCAAAGCCCCTGTATTGTGTTTGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| 3UTR GCA 72 bp | TGTATACCGAATTCAGACCCGAAAGCTCTGAATTTCTaGATCAGACATCCAGTAGAACTTGGGAGTGAAGCT | + |
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Preference number: 3 (lower is better) Translates to: CIPNSDPKALNF*IRHPVELGSEA Trigger: AGCTTCACTCCCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTCGGTATACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | CAGGGCCCAAAGGGACAGTCAGTTCTACTCCCTCCCCTCACTAGGAGCCACCTTGTAAGCGGTGGGCGGTaGACAAACCACCTCGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: QGPKGQSVLLPPLTRSHLVSGGR*TNHLGA Trigger: GGCACCGAGGTGGTTTGTGCACCGCCCACCGCTTAC...AAGGTGGCTCCTAGTGAGGGGAGGGAGTAGAACTGACTGTCCCTTTGGGCCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | CAGGGCCCAAAGGGACAGTCAGTTCTACTCCCTCCCCTCACTAGGAGCCACCTTTGTCTTCTTTCTGAGTaGCCCAGCACGACCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: QGPKGQSVLLPPLTRSHLCLLSE*PSTTQV Trigger: CACCTGGGTCGTGCTGGGGCACTCAGAAAGAAGACA...AAGGTGGCTCCTAGTGAGGGGAGGGAGTAGAACTGACTGTCCCTTTGGGCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | ACATGTAGGATGGTTCACAAACACAATACAGGGGCTTTGGCACCGTGGGGGAGGTGCCGGCACGTTGGCTaGGTTCAGGGTGCAGATGAG | + |
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Preference number: 4 (lower is better) Translates to: TCRMVHKHNTGALAPWGRCRHVG*VQGADE Trigger: CTCATCTGCACCCTGAACGCAGCCAACGTGCCGGCA...CCTCCCCCACGGTGCCAAAGCCCCTGTATTGTGTTTGTGAACCATCCTACATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | TTCCAGCCCAAACCAATGGAAGGTGATTTCACTTGTCAGGGCCCAAAGGGACAGGTAAGCGGTGGGCGGTaGACAAACCACCTCGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: FQPKPMEGDFTCQGPKGQVSGGR*TNHLGA Trigger: GGCACCGAGGTGGTTTGTGCACCGCCCACCGCTTAC...CTGTCCCTTTGGGCCCTGACAAGTGAAATCACCTTCCATTGGTTTGGGCTGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR CCA 90 bp | ACATGTAGGATGGTTCACAAACACAATACAGGGGCTTTGGCACCGTGGGGGAGGCCGTCCACGTCAGGCTaGCTTGCCAGCTCTTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: TCRMVHKHNTGALAPWGRPSTSG*LASSLQ Trigger: CTGCAAAGAGCTGGCAAGCCAGCCTGACGTGGACGG...CCTCCCCCACGGTGCCAAAGCCCCTGTATTGTGTTTGTGAACCATCCTACATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR CCA 90 bp | TACTCCCTCCCCTCACTAGGAGCCACCTTGGTGACAGTTGATTCTACCCACTGTCCGTCCACGTCAGGCTaGCTTGCCAGCTCTTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: YSLPSLGATLVTVDSTHCPSTSG*LASSLQ Trigger: CTGCAAAGAGCTGGCAAGCCAGCCTGACGTGGACGG...ACAGTGGGTAGAATCAACTGTCACCAAGGTGGCTCCTAGTGAGGGGAGGGAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR TCA 90 bp | ACATGTAGGATGGTTCACAAACACAATACAGGGGCTTTGGCACCGTGGGGGAGGGACATGTCTTCTTTCTaGGTGCCCCAGCACGACCCA | + |
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Preference number: 4 (lower is better) Translates to: TCRMVHKHNTGALAPWGRDMSSF*VPQHDP Trigger: TGGGTCGTGCTGGGGCACTCAGAAAGAAGACATGTC...CCTCCCCCACGGTGCCAAAGCCCCTGTATTGTGTTTGTGAACCATCCTACATGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | GAATTCAGACCCGAAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGGTTAGCCCGGCCCCTTaGTGCTCCGCCTTCCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: EFRPESSEFLHQTSSRTWVSPAP*CSAFPS Trigger: GGAGGGGAAGGCGGAGCAGCAAGGGGCCGGGCTAAC...CCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239432.2 |
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| CDS-3UTR CCA 90 bp | ATAATAGGGCGGTGGAAACGGCTCAGGAGGGTACAGCGTGGATTAGGCCACAAGGCGTGGCTCACTTTCTaGCCAATCAGCTCATCTGAT | + |
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Preference number: 4 (lower is better) Translates to: IIGRWKRLRRVQRGLGHKAWLTF*PISSSD Trigger: ATCAGATGAGCTGATTGGCCAGAAAGTGAGCCACGC...CTTGTGGCCTAATCCACGCTGTACCCTCCTGAGCCGTTTCCACCGCCCTATTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | GAATTCAGACCCGAAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGAACCACCTCGGTGCCTaGCGGCACGTTGGCTGCGTT | + |
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Preference number: 4 (lower is better) Translates to: EFRPESSEFLHQTSSRTWNHLGA*RHVGCV Trigger: AACGCAGCCAACGTGCCGGCAGGCACCGAGGTGGTT...CCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | CCGAATTCAGACCCGAAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTAACCACCTCGGTGCCTaGCGGCACGTTGGCTGCGTT | + |
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Preference number: 4 (lower is better) Translates to: PNSDPKALNFCIRHPVELNHLGA*RHVGCV Trigger: AACGCAGCCAACGTGCCGGCAGGCACCGAGGTGGTT...AAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTCGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | ATTATGACAACCCACAAAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGCACAAACCACCTCGGTaGCTGCCGGCACGTTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: IMTTHKAQAQVFISLTCRHKPPR*LPARWL Trigger: CAGCCAACGTGCCGGCAGGCACCGAGGTGGTTTGTG...CCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTTTGTGGGTTGTCATAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR TCA 90 bp | AAACCAATGGAAGGTGATTTCACTTGTCAGGGCCCAAAGGGACAGTCAGTTCTAGACATGTCTTCTTTCTaGGTGCCCCAGCACGACCCA | + |
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Preference number: 4 (lower is better) Translates to: KPMEGDFTCQGPKGQSVLDMSSF*VPQHDP Trigger: TGGGTCGTGCTGGGGCACTCAGAAAGAAGACATGTC...TAGAACTGACTGTCCCTTTGGGCCCTGACAAGTGAAATCACCTTCCATTGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | AAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGGAGTGAAGCTAGATGCCGGCACGTTGGCTaGGTTCAGGGTGCAGATGAG | + |
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Preference number: 4 (lower is better) Translates to: KALNFCIRHPVELGSEARCRHVG*VQGADE Trigger: CTCATCTGCACCCTGAACGCAGCCAACGTGCCGGCA...TCTAGCTTCACTCCCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | AAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATGGTTCACAAACACATGTCTTCTTTCTGAGTaGCCCAGCACGACCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: KLRPRCLFPLHVGWFTNTCLLSE*PSTTQV Trigger: CACCTGGGTCGTGCTGGGGCACTCAGAAAGAAGACA...TGTGTTTGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | GGAGCAGTTACTAAACTTCTGGGCAACCTAGTCCATGCTATGCAGGCAGGTAGAAGGCCAGGACCACCTTaGTCCAGTCTTTCACATTAT | + |
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Preference number: 4 (lower is better) Translates to: GAVTKLLGNLVHAMQAGRRPGPP*SSLSHY Trigger: ATAATGTGAAAGACTGGAGCAAGGTGGTCCTGGCCT...TCTACCTGCCTGCATAGCATGGACTAGGTTGCCCAGAAGTTTAGTAACTGCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR CCA 90 bp | ATTTCCCTTACATGTAGGATGGTTCACAAACACAATACAGGGGCTTTGGCACCGGCGTGGCTCACTTTCTaGCCAATCAGCTCATCTGAT | + |
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Preference number: 4 (lower is better) Translates to: ISLTCRMVHKHNTGALAPAWLTF*PISSSD Trigger: ATCAGATGAGCTGATTGGCCAGAAAGTGAGCCACGC...CGGTGCCAAAGCCCCTGTATTGTGTTTGTGAACCATCCTACATGTAAGGGAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | CCGAATTCAGACCCGAAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTAGGCCAGGACCACCTTaGTCCAGTCTTTCACATTAT | + |
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Preference number: 4 (lower is better) Translates to: PNSDPKALNFCIRHPVELRPGPP*SSLSHY Trigger: ATAATGTGAAAGACTGGAGCAAGGTGGTCCTGGCCT...AAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTCGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR GCA 90 bp | GAATTCAGACCCGAAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGGTCTTTCACATTATCTaGGATGACCTTGGTTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: EFRPESSEFLHQTSSRTWVFHII*DDLGLL Trigger: GAGCAAACCAAGGTCATCGCAGATAATGTGAAAGAC...CCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS TCA 90 bp | ACGAAGAACTTCCTGGTAGGCGCCATTGTACCAGGCTCAAGTCTCTaGAGGTCAGTACAAACGCACGGCTCTCTCCACTGGCCACTTATA | + |
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Preference number: 5 (lower is better) Translates to: TKNFLVGAIVPGSSL*RSVQTHGSLHWPLI Trigger: TATAAGTGGCCAGTGGAGAGAGCCGTGCGTTTGTACTGACCTTCAGAGACTTGAGCCTGGTACAATGGCGCCTACCAGGAAGTTCTTCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239432.2 |
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| CDS-3UTR CAA 90 bp | CACAAAGCTCAGGCCCAGGTGTTTATTTCCCTTACATGTAGGATGGTTCACAAAGTGCCTGCTGAGGGGTaGCCGTCTTGCCAGTCCCAA | + |
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Preference number: 5 (lower is better) Translates to: HKAQAQVFISLTCRMVHKVPAEG*PSCQSQ Trigger: TTGGGACTGGCAAGACGGCAACCCCTCAGCAGGCAC...TTTGTGAACCATCCTACATGTAAGGGAAATAAACACCTGGGCCTGAGCTTTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR CAA 90 bp | AAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTGGGAGTGAAGCTAGAGTGCCTGCTGAGGGGTaGCCGTCTTGCCAGTCCCAA | + |
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Preference number: 5 (lower is better) Translates to: KALNFCIRHPVELGSEARVPAEG*PSCQSQ Trigger: TTGGGACTGGCAAGACGGCAACCCCTCAGCAGGCAC...TCTAGCTTCACTCCCAAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR CAA 90 bp | ACTTCCTGTGCTCCAACCATGAGTTTCCAGCCCAAACCAATGGAAGGTGATTTCACCCCATCATTGACATaGGATTTCAGCCATCCCCGG | + |
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Preference number: 5 (lower is better) Translates to: TSCAPTMSFQPKPMEGDFTPSLT*DFSHPR Trigger: CCGGGGATGGCTGAAATCCAATGTCAATGATGGGGT...GAAATCACCTTCCATTGGTTTGGGCTGGAAACTCATGGTTGGAGCACAGGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS-3UTR CAA 90 bp | CCGAATTCAGACCCGAAAGCTCTGAATTTCTGCATCAGACATCCAGTAGAACTTACCCCATCATTGACATaGGATTTCAGCCATCCCCGG | + |
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Preference number: 5 (lower is better) Translates to: PNSDPKALNFCIRHPVELTPSLT*DFSHPR Trigger: CCGGGGATGGCTGAAATCCAATGTCAATGATGGGGT...AAGTTCTACTGGATGTCTGATGCAGAAATTCAGAGCTTTCGGGTCTGAATTCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000172132.10 ENSMUST00000239432.2 |
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| CDS TCA 72 bp | TTCCTGGTAGGCGCCATTGTACCAGGCTCAAGTCTCTaGAGGTCAGTACAAACGCACGGCTCTCTCCACTGG | + |
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Preference number: 6 (lower is better) Translates to: FLVGAIVPGSSL*RSVQTHGSLHW Trigger: CCAGTGGAGAGAGCCGTGCGTTTGTACTGACCTTCAGAGACTTGAGCCTGGTACAATGGCGCCTACCAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239432.2 |
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