RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TPCN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048677

Ensembl transcript IDs: ENSMUST00000058022.6, ENSMUST00000208148.2, ENSMUST00000208328.2, ENSMUST00000208841.2, ENSMUST00000209047.2, ENSMUST00000209156.2

Found 295 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GACCACCGTATACACTTCAGGGTCTTCTTCATCATGGAGGAATTCTaGAGCAGGAAGAAGGGGCGGAGCAGCCGGCGCATCCGCAGGGGC +
Preference number: 1 (lower is better)
Translates to: DHRIHFRVFFIMEEF*SRKKGRSSRRIRRG
Trigger: GCCCCTGCGGATGCGCCGGCTGCTCCGCCCCTTCTTCCTGCTGCAGAATTCCTCCATGATGAAGAAGACCCTGAAGTGTATACGGTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR GCA 90 bp TGCCAGCTCAGCAGCAGTCCAGATGACTGGGTGGAAGAGGATCCCTaGCAGAAAGCCTTCCTCCACCCACACCCCTCTCCATTAGTCCCA +
Preference number: 1 (lower is better)
Translates to: CQLSSSPDDWVEEDP*QKAFLHPHPSPLVP
Trigger: TGGGACTAATGGAGAGGGGTGTGGGTGGAGGAAGGCTTTCTGGCAGGGATCCTCTTCCACCCAGTCATCTGGACTGCTGCTGAGCTGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR CCA 90 bp GTGTGGAGCAGGGGTCAGGAAGCATGCATTCATGCCAAGGCAGCTTaGGACCTCAGGGGTGGCATTTGGCCTCTCTGGTCTGGTTCCTCA +
Preference number: 1 (lower is better)
Translates to: VWSRGQEACIHAKAA*DLRGGIWPLWSGSS
Trigger: TGAGGAACCAGACCAGAGAGGCCAAATGCCACCCCTGAGGTCCCAAGCTGCCTTGGCATGAATGCATGCTTCCTGACCCCTGCTCCACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR TCA 90 bp CTCACAGTGTCACGGAAGTGGCATCTGGACGGGTTTGCTACAGACTaGCTCTGGCTCCTCTCATCTCCTGCCTACATGGGGCAGCTTGCC +
Preference number: 1 (lower is better)
Translates to: LTVSRKWHLDGFATD*LWLLSSPAYMGQLA
Trigger: GGCAAGCTGCCCCATGTAGGCAGGAGATGAGAGGAGCCAGAGTCAGTCTGTAGCAAACCCGTCCAGATGCCACTTCCGTGACACTGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR CCA 90 bp TGCTGGGTGAGTTTGGCAGCTACTCCAGGAAGTCAATCCAGGAGATaGGGTCCTGCCCATCCTGCTCTCCTGATGTCCCACCATCACACC +
Preference number: 1 (lower is better)
Translates to: CWVSLAATPGSQSRR*GPAHPALLMSHHHT
Trigger: GGTGTGATGGTGGGACATCAGGAGAGCAGGATGGGCAGGACCCCATCTCCTGGATTGACTTCCTGGAGTAGCTGCCAAACTCACCCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 90 bp GCATGCATTCATGCCAAGGCAGCTTGGGACCTCAGGGGTGGCATTTaGCCTCTCTGGTCTGGTTCCTCATTGGTGACAGGGGTTCCCATT +
Preference number: 1 (lower is better)
Translates to: ACIHAKAAWDLRGGI*PLWSGSSLVTGVPI
Trigger: AATGGGAACCCCTGTCACCAATGAGGAACCAGACCAGAGAGGCCAAATGCCACCCCTGAGGTCCCAAGCTGCCTTGGCATGAATGCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR TCA 90 bp GTGGTGCCGACTAATGGTCTGCCAAAGCTACACCTTGGCTACTGCTaGGCAACCACAGAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTC +
Preference number: 1 (lower is better)
Translates to: VVPTNGLPKLHLGYC*ATTEDESLSQPLSV
Trigger: GACAGACAGAGGCTGGGACAAGGACTCATCCTCTGTGGTTGCTCAGCAGTAGCCAAGGTGTAGCTTTGGCAGACCATTAGTCGGCACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 90 bp CCAGGCCAGCATCTCTGTCCTGTCACCCCAGCAAGGAAGCCACTCTaGTGTCACCTGCACAGATGCAAGTGTGGGTGTTTGTGTAGCTTC +
Preference number: 1 (lower is better)
Translates to: PGQHLCPVTPARKPL*CHLHRCKCGCLCSF
Trigger: GAAGCTACACAAACACCCACACTTGCATCTGTGCAGGTGACATCAGAGTGGCTTCCTTGCTGGGGTGACAGGACAGAGATGCTGGCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR GCA 90 bp GTGTTCATCAGTCGTGTCATGTCCCAGAGCGACAGTGGGCCATACTaGTCTGGCTTCCAGCAGGATGATGGTGAGGAGGCCATCAAACAC +
Preference number: 1 (lower is better)
Translates to: VFISRVMSQSDSGPY*SGFQQDDGEEAIKH
Trigger: GTGTTTGATGGCCTCCTCACCATCATCCTGCTGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACTGATGAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR CCA 90 bp ACCACAGAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTaGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGT +
Preference number: 1 (lower is better)
Translates to: TTEDESLSQPLSVSE*SDPGTIFSCSASTS
Trigger: ACTGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTCATCCTCTGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 90 bp TCTTCTGGGAACATGAGAAAGGAGACAGGAAAGGTGATGAACCTTTaGTGGGAAGGTGTCAAGCAGGCAGGAGGGCCAGGGAGCCTCAGC +
Preference number: 1 (lower is better)
Translates to: SSGNMRKETGKVMNL*WEGVKQAGGPGSLS
Trigger: GCTGAGGCTCCCTGGCCCTCCTGCCTGCTTGACACCTTCCCATCAAAGGTTCATCACCTTTCCTGTCTCCTTTCTCATGTTCCCAGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR GCA 90 bp AAAAGAGATGGGAGGGGTGAACAGCAAGCCAGGCAGACATGGGCCTaGAGCCAGGCAGAAGGCATCCATCTATACACACACAAGGGTGTA +
Preference number: 1 (lower is better)
Translates to: KRDGRGEQQARQTWA*SQAEGIHLYTHKGV
Trigger: TACACCCTTGTGTGTGTATAGATGGATGCCTTCTGCCTGGCTGCAGGCCCATGTCTGCCTGGCTTGCTGTTCACCCCTCCCATCTCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR GCA 90 bp AATGGAGTCACTCACAGTGTCACGGAAGTGGCATCTGGACGGGTTTaGTACAGACTGACTCTGGCTCCTCTCATCTCCTGCCTACATGGG +
Preference number: 1 (lower is better)
Translates to: NGVTHSVTEVASGRV*YRLTLAPLISCLHG
Trigger: CCCATGTAGGCAGGAGATGAGAGGAGCCAGAGTCAGTCTGTAGCAAACCCGTCCAGATGCCACTTCCGTGACACTGTGAGTGACTCCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR GCA 90 bp TCCTTGGGCTCTTCTAGGATATCCCATCATGCTGTGAGCATCTCTTaGCAGCTCAGCAGCAGTCCAGATGACTGGGTGGAAGAGGATCCC +
Preference number: 1 (lower is better)
Translates to: SLGSSRISHHAVSIS*QLSSSPDDWVEEDP
Trigger: GGGATCCTCTTCCACCCAGTCATCTGGACTGCTGCTGAGCTGGCAAGAGATGCTCACAGCATGATGGGATATCCTAGAAGAGCCCAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR TCA 90 bp AAGGTGTCAAGCAGGCAGGAGGGCCAGGGAGCCTCAGCCGTACACTaGAACAAAGCCCTTCTCTCTGAAGCTCCTTGTATCAGGCATTTT +
Preference number: 1 (lower is better)
Translates to: KVSSRQEGQGASAVH*NKALLSEAPCIRHF
Trigger: AAAATGCCTGATACAAGGAGCTTCAGAGAGAAGGGCTTTGTTTCAGTGTACGGCTGAGGCTCCCTGGCCCTCCTGCCTGCTTGACACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR CCA 90 bp CTTGGAAGTCACTCTCTCTCCTTAGCAAGTCTCACCAAGACAGCTTaGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCCGACTA +
Preference number: 1 (lower is better)
Translates to: LGSHSLSLASLTKTA*GSNKWRNVALWCRL
Trigger: TAGTCGGCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAGACTTGCTAAGGAGAGAGAGTGACTTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CCA 90 bp GGAGAGCTGAGGCCTTCTTGCTTCCTGGCTTTGAGGAAGGACCCTTaGAAGTCACTCTCTCTCCTTAGCAAGTCTCACCAAGACAGCTTG +
Preference number: 1 (lower is better)
Translates to: GELRPSCFLALRKDP*KSLSLLSKSHQDSL
Trigger: CAAGCTGTCTTGGTGAGACTTGCTAAGGAGAGAGAGTGACTTCCAAGGGTCCTTCCTCAAAGCCAGGAAGCAAGAAGGCCTCAGCTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 90 bp GGTTTGAGTTTGCTGTCTCCTCAGGCCAGGGGTAGATATGCAGTCTaGACTTCTCCCACATTTCAGCACAGCAGAGTGACCCCGACTTCA +
Preference number: 1 (lower is better)
Translates to: GLSLLSPQARGRYAV*TSPTFQHSRVTPTS
Trigger: TGAAGTCGGGGTCACTCTGCTGTGCTGAAATGTGGGAGAAGTTCAGACTGCATATCTACCCCTGGCCTGAGGAGACAGCAAACTCAAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR GCA 90 bp GTGACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTaGCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTG +
Preference number: 1 (lower is better)
Translates to: VTFSTHDTNPNVLET*QLLSCTGLGSQMPL
Trigger: CAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR GCA 90 bp ATCTCTGTCCTGTCACCCCAGCAAGGAAGCCACTCTGATGTCACCTaGACAGATGCAAGTGTGGGTGTTTGTGTAGCTTCTCCATCAGTT +
Preference number: 1 (lower is better)
Translates to: ISVLSPQQGSHSDVT*TDASVGVCVASPSV
Trigger: AACTGATGGAGAAGCTACACAAACACCCACACTTGCATCTGTGCAGGTGACATCAGAGTGGCTTCCTTGCTGGGGTGACAGGACAGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR GCA 90 bp CAGGAGGATAGACAGGAGGATAAACAGGAGGATAAACAGGACACGTaGTGGGTGAGTTTGGCAGCTACTCCAGGAAGTCAATCCAGGAGA +
Preference number: 1 (lower is better)
Translates to: QEDRQEDKQEDKQDT*WVSLAATPGSQSRR
Trigger: TCTCCTGGATTGACTTCCTGGAGTAGCTGCCAAACTCACCCAGCACGTGTCCTGTTTATCCTCCTGTTTATCCTCCTGTCTATCCTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR TCA 90 bp CCAGGATCACCTGCCAATTGTTCACCACCATCACGTTCCACAGTGTaGTCAAAGCAGCAGCAAAGTCGTCAAAGTTGTTGGGCCAGTAAC +
Preference number: 1 (lower is better)
Translates to: PGSPANCSPPSRSTV*SKQQQSRQSCWASN
Trigger: GTTACTGGCCCAACAACTTTGACGACTTTGCTGCTGCTTTGATCACACTGTGGAACGTGATGGTGGTGAACAATTGGCAGGTGATCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
3UTR CCA 90 bp TTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTaGGTATCAAGGAGAGCTGAGGCCTTCTTGCTTCCTGGCTTTGAG +
Preference number: 1 (lower is better)
Translates to: LGSQMPLRLKAQISL*VSRRAEAFLLPGFE
Trigger: CTCAAAGCCAGGAAGCAAGAAGGCCTCAGCTCTCCTTGATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CCA 90 bp CTTCTCACACACAGGCAGGCACACAAGCAAAGTCGTCAAAGTTGTTaGGCCAGTAACCTAGCTGCTCAAAGCTTCCACATACAGCTGAGT +
Preference number: 1 (lower is better)
Translates to: LLTHRQAHKQSRQSC*ASNLAAQSFHIQLS
Trigger: ACTCAGCTGTATGTGGAAGCTTTGAGCAGCTAGGTTACTGGCCCAACAACTTTGACGACTTTGCTTGTGTGCCTGCCTGTGTGTGAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR-3UTR TCA 90 bp CATGGGCCCAGGCCAGCATCTCTGTCCTGTCACCCCAGCAAGGAAGCCACTCTGCACCTTGGCTACTGCTaGGCAACCACAGAGGATGAG +
Preference number: 2 (lower is better)
Translates to: HGPRPASLSCHPSKEATLHLGYC*ATTEDE
Trigger: CTCATCCTCTGTGGTTGCTCAGCAGTAGCCAAGGTG...CAGAGTGGCTTCCTTGCTGGGGTGACAGGACAGAGATGCTGGCCTGGGCCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp GGCCTGCCCAACCAAGTAGCCCTAAAAGAGATGGGAGGGGTGAACAGCAAGCCATCCCACCATCACACCTaGCTCCAGAGGTCAAGGCCC +
Preference number: 2 (lower is better)
Translates to: GLPNQVALKEMGGVNSKPSHHHT*LQRSRP
Trigger: GGGCCTTGACCTCTGGAGGCAGGTGTGATGGTGGGA...TGGCTTGCTGTTCACCCCTCCCATCTCTTTTAGGGCTACTTGGTTGGGCAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR GCA 90 bp TTGCTCTGCCTCGACCAGTTGCTTCCTCCACAGCATGGGCCCAGGCCAGCATCTGTGGAAGAGGATCCCTaGCAGAAAGCCTTCCTCCAC +
Preference number: 2 (lower is better)
Translates to: LLCLDQLLPPQHGPRPASVEEDP*QKAFLH
Trigger: GTGGAGGAAGGCTTTCTGGCAGGGATCCTCTTCCAC...AGATGCTGGCCTGGGCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR-3UTR CCA 90 bp CCTAAAAGAGATGGGAGGGGTGAACAGCAAGCCAGGCAGACATGGGCCTGCAGCCATGCCAAGGCAGCTTaGGACCTCAGGGGTGGCATT +
Preference number: 2 (lower is better)
Translates to: PKRDGRGEQQARQTWACSHAKAA*DLRGGI
Trigger: AATGCCACCCCTGAGGTCCCAAGCTGCCTTGGCATG...GCTGCAGGCCCATGTCTGCCTGGCTTGCTGTTCACCCCTCCCATCTCTTTTAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR CCA 90 bp GGCAGACATGGGCCTGCAGCCAGGCAGAAGGCATCCATCTATACACACACAAGGGTGGGGAGCCTAGTGTaGAGCAGGGGTCAGGAAGCA +
Preference number: 2 (lower is better)
Translates to: GRHGPAARQKASIYTHTRVGSLV*SRGQEA
Trigger: TGCTTCCTGACCCCTGCTCCACACTAGGCTCCCCAC...CCTTGTGTGTGTATAGATGGATGCCTTCTGCCTGGCTGCAGGCCCATGTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR TCA 90 bp GAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCGCAAGGAAGCCACTCTaGTGTCACCTGCACAGATGC +
Preference number: 2 (lower is better)
Translates to: ESLSQPLSVSEWSDPGTIARKPL*CHLHRC
Trigger: GCATCTGTGCAGGTGACATCAGAGTGGCTTCCTTGC...GATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR TCA 90 bp GGGGCTCCTCACAAGCAAGGCTCAGCGAAACGATCCAGTCCACCACAGACACAAAGGACACGTGCTGGGTaGGTTTGGCAGCTACTCCAG +
Preference number: 2 (lower is better)
Translates to: GAPHKQGSAKRSSPPQTQRTRAG*VWQLLQ
Trigger: CTGGAGTAGCTGCCAAACTCACCCAGCACGTGTCCT...TTGTGTCTGTGGTGGACTGGATCGTTTCGCTGAGCCTTGCTTGTGAGGAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR GCA 90 bp CTCACCAAGACAGCTTGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCTCTGCCTCGACCAGTTaGTTCCTCCACAGCATGGGC +
Preference number: 2 (lower is better)
Translates to: LTKTAWGSNKWRNVALWCSASTS*FLHSMG
Trigger: GCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGA...GCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp TCACCAAGACAGCTTGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCCTGTCGGGAACCAGGCTaGTGTTTCCAGGAGGCACGA +
Preference number: 2 (lower is better)
Translates to: SPRQLGGATNGGMWPCGACREPG*CFQEAR
Trigger: TCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACA...GGCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CCA 90 bp GGCAGACATGGGCCTGCAGCCAGGCAGAAGGCATCCATCTATACACACACAAGGCTCAGGGGTGGCATTTaGCCTCTCTGGTCTGGTTCC +
Preference number: 2 (lower is better)
Translates to: GRHGPAARQKASIYTHTRLRGGI*PLWSGS
Trigger: GGAACCAGACCAGAGAGGCCAAATGCCACCCCTGAG...CCTTGTGTGTGTATAGATGGATGCCTTCTGCCTGGCTGCAGGCCCATGTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR TCA 90 bp AGCAGCAGTCCAGATGACTGGGTGGAAGAGGATCCCTGCCAGAAAGCCTTCCTCGGTATCAAGGAGAGCTaGGGCCTTCTTGCTTCCTGG +
Preference number: 2 (lower is better)
Translates to: SSSPDDWVEEDPCQKAFLGIKES*GLLASW
Trigger: CCAGGAAGCAAGAAGGCCTCAGCTCTCCTTGATACC...GAGGAAGGCTTTCTGGCAGGGATCCTCTTCCACCCAGTCATCTGGACTGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp ACGGGCCTGCGTAGCGCTTATAGGCTTCCAGGATCACCTGCCAATTGTTCACCATCTGCCTCGACCAGTTaGTTCCTCCACAGCATGGGC +
Preference number: 2 (lower is better)
Translates to: TGLRSAYRLPGSPANCSPSASTS*FLHSMG
Trigger: GCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGA...TGGTGAACAATTGGCAGGTGATCCTGGAAGCCTATAAGCGCTACGCAGGCCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CCA 90 bp ACTGCTCTGGCTTCCAGCAGGATGATGGTGAGGAGGCCATCAAACACATTGCTAGTAGGACAGGTAGCCTaGCAGGCCCAGCGCGAACAC +
Preference number: 2 (lower is better)
Translates to: TALASSRMMVRRPSNTLLVGQVA*QAQREH
Trigger: GTGTTCGCGCTGGGCCTGCCAGGCTACCTGTCCTAC...TAGCAATGTGTTTGATGGCCTCCTCACCATCATCCTGCTGGAAGCCAGAGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR-3UTR CCA 90 bp CCTAAAAGAGATGGGAGGGGTGAACAGCAAGCCAGGCAGACATGGGCCTGCAGCTTGGCCTCTCTGGTCTaGTTCCTCATTGGTGACAGG +
Preference number: 2 (lower is better)
Translates to: PKRDGRGEQQARQTWACSLASLV*FLIGDR
Trigger: CCTGTCACCAATGAGGAACCAGACCAGAGAGGCCAA...GCTGCAGGCCCATGTCTGCCTGGCTTGCTGTTCACCCCTCCCATCTCTTTTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR TCA 90 bp CTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGGTATCAAGGAGAGCTaGGGCCTTCTTGCTTCCTGG +
Preference number: 2 (lower is better)
Translates to: LSLSGLTQAPSFLALPRPGIKES*GLLASW
Trigger: CCAGGAAGCAAGAAGGCCTCAGCTCTCCTTGATACC...TGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp CTGGAGACCTGCCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTGTCTGCCTCGACCAGTTaGTTCCTCCACAGCATGGGC +
Preference number: 2 (lower is better)
Translates to: LETCQLLSCTGLGSQMPLSASTS*FLHSMG
Trigger: GCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGA...CAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp AACAGCAAGCCAGGCAGACATGGGCCTGCAGCCAGGCAGAAGGCATCCATCTATAGGGGTCAGGAAGCATaGATTCATGCCAAGGCAGCT +
Preference number: 2 (lower is better)
Translates to: NSKPGRHGPAARQKASIYRGQEA*IHAKAA
Trigger: AGCTGCCTTGGCATGAATGCATGCTTCCTGACCCCT...ATAGATGGATGCCTTCTGCCTGGCTGCAGGCCCATGTCTGCCTGGCTTGCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR CCA 90 bp GGGGCTCCTCACAAGCAAGGCTCAGCGAAACGATCCAGTCCACCACAGACACAAGGCATTTGGCCTCTCTaGTCTGGTTCCTCATTGGTG +
Preference number: 2 (lower is better)
Translates to: GAPHKQGSAKRSSPPQTQGIWPL*SGSSLV
Trigger: CACCAATGAGGAACCAGACCAGAGAGGCCAAATGCC...TTGTGTCTGTGGTGGACTGGATCGTTTCGCTGAGCCTTGCTTGTGAGGAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR CCA 90 bp TCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCGTCCAGATGACTGGGTaGAAGAGGATCCCTGCCAGA +
Preference number: 2 (lower is better)
Translates to: SQPLSVSEWSDPGTIFSCVQMTG*KRIPAR
Trigger: TCTGGCAGGGATCCTCTTCCACCCAGTCATCTGGAC...GCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR CAA 90 bp CCTTGGAAGTCACTCTCTCTCCTTAGCAAGTCTCACCAAGACAGCTaGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCCGACT +
Preference number: 2 (lower is better)
Translates to: PWKSLSLLSKSHQDS*GEQQMEECGPVVPT
Trigger: AGTCGGCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAGACTTGCTAAGGAGAGAGAGTGACTTCCAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CAA 90 bp TGGGACCTCAGGGGTGGCATTTGGCCTCTCTGGTCTGGTTCCTCATaGGTGACAGGGGTTCCCATTAGCTTTGTCTATCTAAGCCACCTG +
Preference number: 2 (lower is better)
Translates to: WDLRGGIWPLWSGSS*VTGVPISFVYLSHL
Trigger: CAGGTGGCTTAGATAGACAAAGCTAATGGGAACCCCTGTCACCAATGAGGAACCAGACCAGAGAGGCCAAATGCCACCCCTGAGGTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CAA 90 bp GAATGGAGTCACTCACAGTGTCACGGAAGTGGCATCTGGACGGGTTaGCTACAGACTGACTCTGGCTCCTCTCATCTCCTGCCTACATGG +
Preference number: 2 (lower is better)
Translates to: EWSHSQCHGSGIWTG*LQTDSGSSHLLPTW
Trigger: CCATGTAGGCAGGAGATGAGAGGAGCCAGAGTCAGTCTGTAGCAAACCCGTCCAGATGCCACTTCCGTGACACTGTGAGTGACTCCATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR-3UTR TCA 90 bp TCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCCTTGCTTCCTGGCTTTaGGGAAGGACCCTTGGAAGT +
Preference number: 2 (lower is better)
Translates to: SQPLSVSEWSDPGTIFSCLASWL*GRTLGS
Trigger: ACTTCCAAGGGTCCTTCCTCAAAGCCAGGAAGCAAG...GCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp GACCTGCCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTGCTGTGAGCATCTCTTaGCAGCTCAGCAGCAGTCCA +
Preference number: 2 (lower is better)
Translates to: DLPVTVLYRLGFTNATEAAVSIS*QLSSSP
Trigger: TGGACTGCTGCTGAGCTGGCAAGAGATGCTCACAGC...AGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR-3UTR TCA 90 bp TCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCCAGTTACTGTCCTGTAGCAACCACAGAGGATaGGTCCTTGTCCCAGCCTCT +
Preference number: 2 (lower is better)
Translates to: STHDTNPNVLETCQLLSCSNHRG*VLVPAS
Trigger: AGAGGCTGGGACAAGGACTCATCCTCTGTGGTTGCT...ACAGGACAGTAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp TCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTGCCGACTAATGGTCTaGCAAAGCTACACCTTGGCT +
Preference number: 2 (lower is better)
Translates to: SLSQPLSVSEWSDPGTIFCRLMV*QSYTLA
Trigger: AGCCAAGGTGTAGCTTTGGCAGACCATTAGTCGGCA...AAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp GACCTGCCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTGAGCTGAGGCCTTCTTaGTTCCTGGCTTTGAGGAAG +
Preference number: 2 (lower is better)
Translates to: DLPVTVLYRLGFTNATEAELRPS*FLALRK
Trigger: CTTCCTCAAAGCCAGGAAGCAAGAAGGCCTCAGCTC...AGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp GGCAGAAGGCATCCATCTATACACACACAAGGGTGTATACACAGAGTGAGGAGTGGGTCCTGCCCATCCTaGTCTCCTGATGTCCCACCA +
Preference number: 2 (lower is better)
Translates to: GRRHPSIHTQGCIHRVRSGSCPS*SPDVPP
Trigger: TGGTGGGACATCAGGAGAGCAGGATGGGCAGGACCC...ACTCCTCACTCTGTGTATACACCCTTGTGTGTGTATAGATGGATGCCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR TCA 90 bp GTGACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCCAGTTAAGCAACCACAGAGGATaGGTCCTTGTCCCAGCCTCT +
Preference number: 2 (lower is better)
Translates to: VTFSTHDTNPNVLETCQLSNHRG*VLVPAS
Trigger: AGAGGCTGGGACAAGGACTCATCCTCTGTGGTTGCT...TAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR TCA 90 bp ACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGTTGCTTCCTCCACAGCAGACATTCTCTACACATaGCACCAACCCCAATGTCCT +
Preference number: 2 (lower is better)
Translates to: TQAPSFLALPRPVASSTADILYT*HQPQCP
Trigger: AGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTC...TGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR TCA 90 bp CTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGACATTCTCTACACATaGCACCAACCCCAATGTCCT +
Preference number: 2 (lower is better)
Translates to: LSLSGLTQAPSFLALPRPDILYT*HQPQCP
Trigger: AGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTC...TGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp CTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCTGTCGGGAACCAGGCTaGTGTTTCCAGGAGGCACGA +
Preference number: 2 (lower is better)
Translates to: LGFTNATEAEGTDKFVGICREPG*CFQEAR
Trigger: TCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACA...GATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CCA 90 bp AAAGAGGTGACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCTGGGGGAGCAACAAATaGAGGAATGTGGCCCTGTGG +
Preference number: 2 (lower is better)
Translates to: KEVTFSTHDTNPNVLETCWGSNK*RNVALW
Trigger: CCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCA...GCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCACCTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CCA 90 bp GTGACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCCAGTTATGGGGGAGCAACAAATaGAGGAATGTGGCCCTGTGG +
Preference number: 2 (lower is better)
Translates to: VTFSTHDTNPNVLETCQLWGSNK*RNVALW
Trigger: CCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCA...TAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CAA 90 bp GTTTGTGGGTATCAAGGAGAGCTGAGGCCTTCTTGCTTCCTGGCTTaGAGGAAGGACCCTTGGAAGTCACTCTCTCTCCTTAGCAAGTCT +
Preference number: 2 (lower is better)
Translates to: VCGYQGELRPSCFLA*RKDPWKSLSLLSKS
Trigger: AGACTTGCTAAGGAGAGAGAGTGACTTCCAAGGGTCCTTCCTCAAAGCCAGGAAGCAAGAAGGCCTCAGCTCTCCTTGATACCCACAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR TCA 90 bp ATGACCTTGAGGGTCCCATCTGTGGAGAAAGTTCTCCAGAAGAAGAGCCAGAAACACCTTGGCTACTGCTaGGCAACCACAGAGGATGAG +
Preference number: 2 (lower is better)
Translates to: MTLRVPSVEKVLQKKSQKHLGYC*ATTEDE
Trigger: CTCATCCTCTGTGGTTGCTCAGCAGTAGCCAAGGTG...TTTCTGGCTCTTCTTCTGGAGAACTTTCTCCACAGATGGGACCCTCAAGGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp AAAGAGGTGACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCGAGCTGAGGCCTTCTTaGTTCCTGGCTTTGAGGAAG +
Preference number: 2 (lower is better)
Translates to: KEVTFSTHDTNPNVLETCELRPS*FLALRK
Trigger: CTTCCTCAAAGCCAGGAAGCAAGAAGGCCTCAGCTC...GCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCACCTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp TTCACCACCATCACGTTCCACAGTGTGATCAAAGCAGCAGCAAAGTCGTCAAAGGACAGTGGGCCATACTaGTCTGGCTTCCAGCAGGAT +
Preference number: 2 (lower is better)
Translates to: FTTITFHSVIKAAAKSSKDSGPY*SGFQQD
Trigger: ATCCTGCTGGAAGCCAGAGCAGTATGGCCCACTGTC...CTTTGACGACTTTGCTGCTGCTTTGATCACACTGTGGAACGTGATGGTGGTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR-3UTR GCA 90 bp GGAAGTGGCATCTGGACGGGTTTGCTACAGACTGACTCTGGCTCCTCTCATCTCCAGAAATCATGTGGATaGACTTCTCACACACAGGCA +
Preference number: 2 (lower is better)
Translates to: GSGIWTGLLQTDSGSSHLQKSCG*TSHTQA
Trigger: TGCCTGTGTGTGAGAAGTGCATCCACATGATTTCTG...GAGATGAGAGGAGCCAGAGTCAGTCTGTAGCAAACCCGTCCAGATGCCACTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR-3UTR CCA 90 bp AAAGAGGTGACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCCTCACCAAGACAGCTTaGGGGAGCAACAAATGGAGG +
Preference number: 2 (lower is better)
Translates to: KEVTFSTHDTNPNVLETCLTKTA*GSNKWR
Trigger: CCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAG...GCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCACCTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CCA 90 bp AGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTCTCACCAAGACAGCTTaGGGGAGCAACAAATGGAGG +
Preference number: 2 (lower is better)
Translates to: RLGFTNATEAEGTDKFVGLTKTA*GSNKWR
Trigger: CCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAG...ACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CCA 90 bp TCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTGCACAGATAAGTTTGTaGGTATCAAGGAGAGCTGAG +
Preference number: 2 (lower is better)
Translates to: SLSQPLSVSEWSDPGTIFAQISL*VSRRAE
Trigger: CTCAGCTCTCCTTGATACCCACAAACTTATCTGTGC...AAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CCA 90 bp TTTATGTTGGGGATGATGCGCAGGAAGCGAAACACAATCAGTGTGTTCATCAGTGTCCCAGAGCGACAGTaGGCCATACTGCTCTGGCTT +
Preference number: 2 (lower is better)
Translates to: FMLGMMRRKRNTISVFISVPERQ*AILLWL
Trigger: AAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGAC...ACTGATGAACACACTGATTGTGTTTCGCTTCCTGCGCATCATCCCCAACATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000209047.2
3UTR-3UTR TCA 90 bp ACACATGACACCAACCCCAATGTCCTGGAGACCTGCCAGTTACTGTCCTGTACATCACATCCACAGCACTaGAACAAAGAGGTGACATTC +
Preference number: 2 (lower is better)
Translates to: THDTNPNVLETCQLLSCTSHPQH*NKEVTF
Trigger: GAATGTCACCTCTTTGTTTCAGTGCTGTGGATGTGA...TGTACAGGACAGTAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp CTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCTGCCGACTAATGGTCTaGCAAAGCTACACCTTGGCT +
Preference number: 2 (lower is better)
Translates to: LGFTNATEAEGTDKFVGICRLMV*QSYTLA
Trigger: AGCCAAGGTGTAGCTTTGGCAGACCATTAGTCGGCA...GATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp ATGACCTTGAGGGTCCCATCTGTGGAGAAAGTTCTCCAGAAGAAGAGCCAGAAAGCTTCCAGGATCACCTaGCAATTGTTCACCACCATC +
Preference number: 2 (lower is better)
Translates to: MTLRVPSVEKVLQKKSQKASRIT*QLFTTI
Trigger: GATGGTGGTGAACAATTGGCAGGTGATCCTGGAAGC...TTTCTGGCTCTTCTTCTGGAGAACTTTCTCCACAGATGGGACCCTCAAGGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
3UTR-3UTR CCA 90 bp AGGCTGAAGGCACAGATAAGTTTGTGGGTATCAAGGAGAGCTGAGGCCTTCTTGTTGAGGAAGGACCCTTaGAAGTCACTCTCTCTCCTT +
Preference number: 2 (lower is better)
Translates to: RLKAQISLWVSRRAEAFLLRKDP*KSLSLL
Trigger: AAGGAGAGAGAGTGACTTCCAAGGGTCCTTCCTCAA...CAAGAAGGCCTCAGCTCTCCTTGATACCCACAAACTTATCTGTGCCTTCAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR TCA 90 bp GACCTGCCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTACTGAAACAAAGAGGTaGCATTCTCTACACATGACA +
Preference number: 2 (lower is better)
Translates to: DLPVTVLYRLGFTNATEATETKR*HSLHMT
Trigger: TGTCATGTGTAGAGAATGTCACCTCTTTGTTTCAGT...AGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR TCA 90 bp ATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCAAGGAGAGCTGAGTCACATCCACAGCACTaGAACAAAGAGGTGACATTC +
Preference number: 2 (lower is better)
Translates to: MPLRLKAQISLWVSRRAESHPQH*NKEVTF
Trigger: GAATGTCACCTCTTTGTTTCAGTGCTGTGGATGTGA...CTCAGCTCTCCTTGATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CAA 90 bp TCCCATCTGTGGAGAAAGTTCTCCAGAAGAAGAGCCAGAAACAGGTaGATCCAGATAACAGAGGACACCAGCCACCATAGCACAAAATAC +
Preference number: 2 (lower is better)
Translates to: SHLWRKFSRRRARNR*IQITEDTSHHSTKY
Trigger: GTATTTTGTGCTATGGTGGCTGGTGTCCTCTGTTATCTGGATCAACCTGTTTCTGGCTCTTCTTCTGGAGAACTTTCTCCACAGATGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
3UTR-3UTR TCA 90 bp TCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCCAGTTACTGTCCTGTACTGAAACAAAGAGGTaGCATTCTCTACACATGACA +
Preference number: 2 (lower is better)
Translates to: STHDTNPNVLETCQLLSCTETKR*HSLHMT
Trigger: TGTCATGTGTAGAGAATGTCACCTCTTTGTTTCAGT...ACAGGACAGTAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR GCA 90 bp TCTGTGGAGAAAGTTCTCCAGAAGAAGAGCCAGAAACAGGTTGATCCAGATAACGGCCATCAAACACATTaGTATGGTAGGACAGGTAGC +
Preference number: 2 (lower is better)
Translates to: SVEKVLQKKSQKQVDPDNGHQTH*YGRTGS
Trigger: GCTACCTGTCCTACCATAGCAATGTGTTTGATGGCC...GTTATCTGGATCAACCTGTTTCTGGCTCTTCTTCTGGAGAACTTTCTCCACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR-3UTR TCA 90 bp TCTGTGGAGAAAGTTCTCCAGAAGAAGAGCCAGAAACAGGTTGATCCAGATAACGCAGGTAGTACAAGATaGAGATGTAGTCAAGAATCT +
Preference number: 2 (lower is better)
Translates to: SVEKVLQKKSQKQVDPDNAGSTR*RCSQES
Trigger: AGATTCTTGACTACATCTTCATCTTGTACTACCTGC...GTTATCTGGATCAACCTGTTTCTGGCTCTTCTTCTGGAGAACTTTCTCCACAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR GCA 72 bp AGTCGTGTCATGTCCCAGAGCGACAGTGGGCCATACTaGTCTGGCTTCCAGCAGGATGATGGTGAGGAGGCC +
Preference number: 3 (lower is better)
Translates to: SRVMSQSDSGPY*SGFQQDDGEEA
Trigger: GGCCTCCTCACCATCATCCTGCTGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR GCA 72 bp AGCAGCAGTCCAGATGACTGGGTGGAAGAGGATCCCTaGCAGAAAGCCTTCCTCCACCCACACCCCTCTCCA +
Preference number: 3 (lower is better)
Translates to: SSSPDDWVEEDP*QKAFLHPHPSP
Trigger: TGGAGAGGGGTGTGGGTGGAGGAAGGCTTTCTGGCAGGGATCCTCTTCCACCCAGTCATCTGGACTGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR CCA 72 bp CATGCCAAGGCAGCTTGGGACCTCAGGGGTGGCATTTaGCCTCTCTGGTCTGGTTCCTCATTGGTGACAGGG +
Preference number: 3 (lower is better)
Translates to: HAKAAWDLRGGI*PLWSGSSLVTG
Trigger: CCCTGTCACCAATGAGGAACCAGACCAGAGAGGCCAAATGCCACCCCTGAGGTCCCAAGCTGCCTTGGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 72 bp CAGACTGACTCTGGCTCCTCTCATCTCCTGCCTACATaGGGCAGCTTGCCGCTGTCTGTAACTCCAGCTCCG +
Preference number: 3 (lower is better)
Translates to: QTDSGSSHLLPT*GSLPLSVTPAP
Trigger: CGGAGCTGGAGTTACAGACAGCGGCAAGCTGCCCCATGTAGGCAGGAGATGAGAGGAGCCAGAGTCAGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR-3UTR CAA 90 bp CACCCACACCCCTCTCCATTAGTCCCATGGACTGGAGACACGCCCAAGCCCACAACAGAGGATGAGTCCTaGTCCCAGCCTCTGTCTGTC +
Preference number: 3 (lower is better)
Translates to: HPHPSPLVPWTGDTPKPTTEDES*SQPLSV
Trigger: GACAGACAGAGGCTGGGACAAGGACTCATCCTCTGT...TGTGGGCTTGGGCGTGTCTCCAGTCCATGGGACTAATGGAGAGGGGTGTGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp GTCAAGCAGGCAGGAGGGCCAGGGAGCCTCAGCCGTACACTGAAACAAAGCCCTGCCATTGGCTTTATGTaGGGGATGATGCGCAGGAAG +
Preference number: 3 (lower is better)
Translates to: VKQAGGPGSLSRTLKQSPAIGFM*GMMRRK
Trigger: CTTCCTGCGCATCATCCCCAACATAAAGCCAATGGC...AGGGCTTTGTTTCAGTGTACGGCTGAGGCTCCCTGGCCCTCCTGCCTGCTTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR GCA 72 bp AGGAAGTCAATCCAGGAGATGGGGTCCTGCCCATCCTaGTCTCCTGATGTCCCACCATCACACCTGCCTCCA +
Preference number: 3 (lower is better)
Translates to: RKSIQEMGSCPS*SPDVPPSHLPP
Trigger: TGGAGGCAGGTGTGATGGTGGGACATCAGGAGAGCAGGATGGGCAGGACCCCATCTCCTGGATTGACTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR GCA 72 bp CCTAGTGTGGAGCAGGGGTCAGGAAGCATGCATTCATaGCAAGGCAGCTTGGGACCTCAGGGGTGGCATTTG +
Preference number: 3 (lower is better)
Translates to: PSVEQGSGSMHS*QGSLGPQGWHL
Trigger: CAAATGCCACCCCTGAGGTCCCAAGCTGCCTTGGCATGAATGCATGCTTCCTGACCCCTGCTCCACACTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 72 bp GCAGCTTGGGACCTCAGGGGTGGCATTTGGCCTCTCTaGTCTGGTTCCTCATTGGTGACAGGGGTTCCCATT +
Preference number: 3 (lower is better)
Translates to: AAWDLRGGIWPL*SGSSLVTGVPI
Trigger: AATGGGAACCCCTGTCACCAATGAGGAACCAGACCAGAGAGGCCAAATGCCACCCCTGAGGTCCCAAGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 72 bp AGGGGTCAGGAAGCATGCATTCATGCCAAGGCAGCTTaGGACCTCAGGGGTGGCATTTGGCCTCTCTGGTCT +
Preference number: 3 (lower is better)
Translates to: RGQEACIHAKAA*DLRGGIWPLWS
Trigger: AGACCAGAGAGGCCAAATGCCACCCCTGAGGTCCCAAGCTGCCTTGGCATGAATGCATGCTTCCTGACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 72 bp TCTCTTGCCAGCTCAGCAGCAGTCCAGATGACTGGGTaGAAGAGGATCCCTGCCAGAAAGCCTTCCTCCACC +
Preference number: 3 (lower is better)
Translates to: SLASSAAVQMTG*KRIPARKPSST
Trigger: GGTGGAGGAAGGCTTTCTGGCAGGGATCCTCTTCCACCCAGTCATCTGGACTGCTGCTGAGCTGGCAAGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp CATCTTTTCTTGCTCTGCCTCGACCAGTTGCTTCCTCCACAGCATGGGCCCAGGACAGAGGATGAGTCCTaGTCCCAGCCTCTGTCTGTC +
Preference number: 3 (lower is better)
Translates to: HLFLLCLDQLLPPQHGPRTEDES*SQPLSV
Trigger: GACAGACAGAGGCTGGGACAAGGACTCATCCTCTGT...CCTGGGCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAAGAAAAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp GGCAGACATGGGCCTGCAGCCAGGCAGAAGGCATCCATCTATACACACACAAGGACGTGCTGGGTGAGTTaGGCAGCTACTCCAGGAAGT +
Preference number: 3 (lower is better)
Translates to: GRHGPAARQKASIYTHTRTCWVS*AATPGS
Trigger: ACTTCCTGGAGTAGCTGCCAAACTCACCCAGCACGT...CCTTGTGTGTGTATAGATGGATGCCTTCTGCCTGGCTGCAGGCCCATGTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR TCA 72 bp AGCAGGCAGGAGGGCCAGGGAGCCTCAGCCGTACACTaGAACAAAGCCCTTCTCTCTGAAGCTCCTTGTATC +
Preference number: 3 (lower is better)
Translates to: SRQEGQGASAVH*NKALLSEAPCI
Trigger: GATACAAGGAGCTTCAGAGAGAAGGGCTTTGTTTCAGTGTACGGCTGAGGCTCCCTGGCCCTCCTGCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR GCA 72 bp AGCTACTCCAGGAAGTCAATCCAGGAGATGGGGTCCTaGCCATCCTGCTCTCCTGATGTCCCACCATCACAC +
Preference number: 3 (lower is better)
Translates to: SYSRKSIQEMGS*PSCSPDVPPSH
Trigger: GTGTGATGGTGGGACATCAGGAGAGCAGGATGGGCAGGACCCCATCTCCTGGATTGACTTCCTGGAGTAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 72 bp TGTGTTCATCAGTCGTGTCATGTCCCAGAGCGACAGTaGGCCATACTGCTCTGGCTTCCTGGGCACAGTGAG +
Preference number: 3 (lower is better)
Translates to: CVHQSCHVPERQ*AILLWLPGHSE
Trigger: CTCACTGTGCCCAGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACTGATGAACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
3UTR CCA 72 bp AGTTTGGCAGCTACTCCAGGAAGTCAATCCAGGAGATaGGGTCCTGCCCATCCTGCTCTCCTGATGTCCCAC +
Preference number: 3 (lower is better)
Translates to: SLAATPGSQSRR*GPAHPALLMSH
Trigger: GTGGGACATCAGGAGAGCAGGATGGGCAGGACCCCATCTCCTGGATTGACTTCCTGGAGTAGCTGCCAAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 72 bp AGCATCTCTTGCCAGCTCAGCAGCAGTCCAGATGACTaGGTGGAAGAGGATCCCTGCCAGAAAGCCTTCCTC +
Preference number: 3 (lower is better)
Translates to: SISCQLSSSPDD*VEEDPCQKAFL
Trigger: GAGGAAGGCTTTCTGGCAGGGATCCTCTTCCACCCAGTCATCTGGACTGCTGCTGAGCTGGCAAGAGATGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp ACGGGCCTGCGTAGCGCTTATAGGCTTCCAGGATCACCTGCCAATTGTTCACCAACAGAGGATGAGTCCTaGTCCCAGCCTCTGTCTGTC +
Preference number: 3 (lower is better)
Translates to: TGLRSAYRLPGSPANCSPTEDES*SQPLSV
Trigger: GACAGACAGAGGCTGGGACAAGGACTCATCCTCTGT...TGGTGAACAATTGGCAGGTGATCCTGGAAGCCTATAAGCGCTACGCAGGCCCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp TCACCAAGACAGCTTGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCCTCTCACCAAGACAGCTaGGGGGAGCAACAAATGGAG +
Preference number: 3 (lower is better)
Translates to: SPRQLGGATNGGMWPCGASHQDS*GEQQME
Trigger: CTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAGA...GGCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp GAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCTTTGAGGAAGGACCCTaGGAAGTCACTCTCTCTCCT +
Preference number: 3 (lower is better)
Translates to: EDESLSQPLSVSEWSDPGFEEGP*EVTLSP
Trigger: AGGAGAGAGAGTGACTTCCAAGGGTCCTTCCTCAAA...GCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTCATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp AGGAATGGAGTCACTCACAGTGTCACGGAAGTGGCATCTGGACGGGTTTGCTACCCTACATGGGGCAGCTaGCCGCTGTCTGTAACTCCA +
Preference number: 3 (lower is better)
Translates to: RNGVTHSVTEVASGRVCYPTWGS*PLSVTP
Trigger: TGGAGTTACAGACAGCGGCAAGCTGCCCCATGTAGG...GTAGCAAACCCGTCCAGATGCCACTTCCGTGACACTGTGAGTGACTCCATTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR TCA 72 bp CCCACCCCCGGGACACCCCCATCACATCCACAGCACTaGAACAAAGAGGTGACATTCTCTACACATGACACC +
Preference number: 3 (lower is better)
Translates to: PTPGTPPSHPQH*NKEVTFSTHDT
Trigger: GGTGTCATGTGTAGAGAATGTCACCTCTTTGTTTCAGTGCTGTGGATGTGATGGGGGTGTCCCGGGGGTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR GCA 72 bp GTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTaGTCTGCCTCGACCAGTTGCTTCCTCCACAGCATG +
Preference number: 3 (lower is better)
Translates to: VSEWSDPGTIFS*SASTSCFLHSM
Trigger: CATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR GCA 72 bp ATACACTTCAGGGTCTTCTTCATCATGGAGGAATTCTaGAGCAGGAAGAAGGGGCGGAGCAGCCGGCGCATC +
Preference number: 3 (lower is better)
Translates to: IHFRVFFIMEEF*SRKKGRSSRRI
Trigger: GATGCGCCGGCTGCTCCGCCCCTTCTTCCTGCTGCAGAATTCCTCCATGATGAAGAAGACCCTGAAGTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 72 bp GATGAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTaGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCC +
Preference number: 3 (lower is better)
Translates to: DESLSQPLSVSE*SDPGTIFSCSA
Trigger: GGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CCA 72 bp GCAAGTCTCACCAAGACAGCTTGGGGGAGCAACAAATaGAGGAATGTGGCCCTGTGGTGCCGACTAATGGTC +
Preference number: 3 (lower is better)
Translates to: ASLTKTAWGSNK*RNVALWCRLMV
Trigger: GACCATTAGTCGGCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAGACTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CCA 72 bp GCCATCAAACACATTGCTATGGTAGGACAGGTAGCCTaGCAGGCCCAGCGCGAACACCTTAAACAGCAGCTC +
Preference number: 3 (lower is better)
Translates to: AIKHIAMVGQVA*QAQREHLKQQL
Trigger: GAGCTGCTGTTTAAGGTGTTCGCGCTGGGCCTGCCAGGCTACCTGTCCTACCATAGCAATGTGTTTGATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
3UTR-3UTR CAA 90 bp TCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCTTCCTGGCTTaGAGGAAGGACCCTTGGAAG +
Preference number: 3 (lower is better)
Translates to: SLSQPLSVSEWSDPGTIFSCFLA*RKDPWK
Trigger: CTTCCAAGGGTCCTTCCTCAAAGCCAGGAAGCAAGA...AAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 72 bp CATCTCTGTCCTGTCACCCCAGCAAGGAAGCCACTCTaGTGTCACCTGCACAGATGCAAGTGTGGGTGTTTG +
Preference number: 3 (lower is better)
Translates to: HLCPVTPARKPL*CHLHRCKCGCL
Trigger: CAAACACCCACACTTGCATCTGTGCAGGTGACATCAGAGTGGCTTCCTTGCTGGGGTGACAGGACAGAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CCA 72 bp CACTCTCTCTCCTTAGCAAGTCTCACCAAGACAGCTTaGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGG +
Preference number: 3 (lower is better)
Translates to: HSLSLASLTKTA*GSNKWRNVALW
Trigger: CCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAGACTTGCTAAGGAGAGAGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp TCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCTTTGAGGAAGGACCCTaGGAAGTCACTCTCTCTCCT +
Preference number: 3 (lower is better)
Translates to: SQPLSVSEWSDPGTIFSCFEEGP*EVTLSP
Trigger: AGGAGAGAGAGTGACTTCCAAGGGTCCTTCCTCAAA...GCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 72 bp ACTAATGGTCTGCCAAAGCTACACCTTGGCTACTGCTaGGCAACCACAGAGGATGAGTCCTTGTCCCAGCCT +
Preference number: 3 (lower is better)
Translates to: TNGLPKLHLGYC*ATTEDESLSQP
Trigger: AGGCTGGGACAAGGACTCATCCTCTGTGGTTGCTCAGCAGTAGCCAAGGTGTAGCTTTGGCAGACCATTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 72 bp TTTAGCCTGAAGTGGGCTTCCGGGAGGGGATCCCATTaGGAGTCGAGGAGTATCTGTATATTCCAGGAAGGG +
Preference number: 3 (lower is better)
Translates to: FSLKWASGRGSH*ESRSICIFQEG
Trigger: CCCTTCCTGGAATATACAGATACTCCTCGACTCTCAATGGGATCCCCTCCCGGAAGCCCACTTCAGGCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR TCA 72 bp TTGCTGTCTCCTCAGGCCAGGGGTAGATATGCAGTCTaGACTTCTCCCACATTTCAGCACAGCAGAGTGACC +
Preference number: 3 (lower is better)
Translates to: LLSPQARGRYAV*TSPTFQHSRVT
Trigger: GGTCACTCTGCTGTGCTGAAATGTGGGAGAAGTTCAGACTGCATATCTACCCCTGGCCTGAGGAGACAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR GCA 72 bp CTGTCACCCCAGCAAGGAAGCCACTCTGATGTCACCTaGACAGATGCAAGTGTGGGTGTTTGTGTAGCTTCT +
Preference number: 3 (lower is better)
Translates to: LSPQQGSHSDVT*TDASVGVCVAS
Trigger: AGAAGCTACACAAACACCCACACTTGCATCTGTGCAGGTGACATCAGAGTGGCTTCCTTGCTGGGGTGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp ACCTGCCAATTGTTCACCACCATCACGTTCCACAGTGTGATCAAAGCAGCAGCATCTCACCAAGACAGCTaGGGGGAGCAACAAATGGAG +
Preference number: 3 (lower is better)
Translates to: TCQLFTTITFHSVIKAAASHQDS*GEQQME
Trigger: CTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAGA...TGCTGCTGCTTTGATCACACTGTGGAACGTGATGGTGGTGAACAATTGGCAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp ACCTGCCAATTGTTCACCACCATCACGTTCCACAGTGTGATCAAAGCAGCAGCAGCCATTGGCTTTATGTaGGGGATGATGCGCAGGAAG +
Preference number: 3 (lower is better)
Translates to: TCQLFTTITFHSVIKAAAAIGFM*GMMRRK
Trigger: CTTCCTGCGCATCATCCCCAACATAAAGCCAATGGC...TGCTGCTGCTTTGATCACACTGTGGAACGTGATGGTGGTGAACAATTGGCAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000209047.2
3UTR GCA 72 bp TCTACACATGACACCAACCCCAATGTCCTGGAGACCTaGCAGTTACTGTCCTGTACAGGCTTGGGTTCACAA +
Preference number: 3 (lower is better)
Translates to: STHDTNPNVLET*QLLSCTGLGSQ
Trigger: TTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR GCA 72 bp TCTTCTAGGATATCCCATCATGCTGTGAGCATCTCTTaGCAGCTCAGCAGCAGTCCAGATGACTGGGTGGAA +
Preference number: 3 (lower is better)
Translates to: SSRISHHAVSIS*QLSSSPDDWVE
Trigger: TTCCACCCAGTCATCTGGACTGCTGCTGAGCTGGCAAGAGATGCTCACAGCATGATGGGATATCCTAGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR CCA 72 bp CAGGAGGATAAACAGGAGGATAAACAGGACACGTGCTaGGTGAGTTTGGCAGCTACTCCAGGAAGTCAATCC +
Preference number: 3 (lower is better)
Translates to: QEDKQEDKQDTC*VSLAATPGSQS
Trigger: GGATTGACTTCCTGGAGTAGCTGCCAAACTCACCCAGCACGTGTCCTGTTTATCCTCCTGTTTATCCTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR-3UTR CAA 90 bp CTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCTCTTGCTTCCTGGCTTaGAGGAAGGACCCTTGGAAG +
Preference number: 3 (lower is better)
Translates to: LGFTNATEAEGTDKFVGISCFLA*RKDPWK
Trigger: CTTCCAAGGGTCCTTCCTCAAAGCCAGGAAGCAAGA...GATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp TCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCCAGTTACTGTCCTGTAGAGCCAGAAACAGGTaGATCCAGATAACAGAGGAC +
Preference number: 3 (lower is better)
Translates to: STHDTNPNVLETCQLLSCRARNR*IQITED
Trigger: GTCCTCTGTTATCTGGATCAACCTGTTTCTGGCTCT...ACAGGACAGTAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 72 bp CACCCCCATCACATCCACAGCACTGAAACAAAGAGGTaGCATTCTCTACACATGACACCAACCCCAATGTCC +
Preference number: 3 (lower is better)
Translates to: HPHHIHSTETKR*HSLHMTPTPMS
Trigger: GGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCACCTCTTTGTTTCAGTGCTGTGGATGTGATGGGGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 72 bp AGGATAAACAGGAGGATAAACAGGACACGTGCTGGGTaGGTTTGGCAGCTACTCCAGGAAGTCAATCCAGGA +
Preference number: 3 (lower is better)
Translates to: RINRRINRTRAG*VWQLLQEVNPG
Trigger: TCCTGGATTGACTTCCTGGAGTAGCTGCCAAACTCACCCAGCACGTGTCCTGTTTATCCTCCTGTTTATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR TCA 72 bp ATCCATCTATACACACACAAGGGTGTATACACAGAGTaGGGAGTTCCAACAGTCCGGTCCCCACGCACTACT +
Preference number: 3 (lower is better)
Translates to: IHLYTHKGVYTE*GVPTVRSPRTT
Trigger: AGTAGTGCGTGGGGACCGGACTGTTGGAACTCCTCACTCTGTGTATACACCCTTGTGTGTGTATAGATGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR GCA 72 bp GAACAGGTTGATCCCGATCATGGCAAACACATAGTATaGCACCACCAGGATCCCACCAAATGCCCTCAAGTT +
Preference number: 3 (lower is better)
Translates to: EQVDPDHGKHIV*HHQDPTKCPQV
Trigger: AACTTGAGGGCATTTGGTGGGATCCTGGTGGTGGCATACTATGTGTTTGCCATGATCGGGATCAACCTGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
3UTR GCA 72 bp AGACAGGAGGATAAACAGGAGGATAAACAGGACACGTaGTGGGTGAGTTTGGCAGCTACTCCAGGAAGTCAA +
Preference number: 3 (lower is better)
Translates to: RQEDKQEDKQDT*WVSLAATPGSQ
Trigger: TTGACTTCCTGGAGTAGCTGCCAAACTCACCCAGCACGTGTCCTGTTTATCCTCCTGTTTATCCTCCTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CCA 72 bp CAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTaGGTATCAAGGAGAGCTGAGGCCTTCTTGCTTCCT +
Preference number: 3 (lower is better)
Translates to: QMPLRLKAQISL*VSRRAEAFLLP
Trigger: AGGAAGCAAGAAGGCCTCAGCTCTCCTTGATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CCA 72 bp GTATCTGTATATTCCAGGAAGGGGGAATTCCCATTCTaGCCAGGCTTCAGGAATGGAGTCACTCACAGTGTC +
Preference number: 3 (lower is better)
Translates to: VSVYSRKGEFPF*PGFRNGVTHSV
Trigger: GACACTGTGAGTGACTCCATTCCTGAAGCCTGGCCAGAATGGGAATTCCCCCTTCCTGGAATATACAGATAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR-3UTR CAA 90 bp TGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGAGGATCACCTGCCAATaGTTCACCACCATCACGTTC +
Preference number: 3 (lower is better)
Translates to: CTGLGSQMPLRLKAQISLRITCQ*FTTITF
Trigger: GAACGTGATGGTGGTGAACAATTGGCAGGTGATCCT...CAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR-3UTR CAA 90 bp ATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCAAGGAGAGCTGAGAGAGCCAGAAACAGGTaGATCCAGATAACAGAGGAC +
Preference number: 3 (lower is better)
Translates to: MPLRLKAQISLWVSRRAERARNR*IQITED
Trigger: GTCCTCTGTTATCTGGATCAACCTGTTTCTGGCTCT...CTCAGCTCTCCTTGATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 72 bp ACAGCACTGAAACAAAGAGGTGACATTCTCTACACATaGCACCAACCCCAATGTCCTGGAGACCTGCCAGTT +
Preference number: 3 (lower is better)
Translates to: TALKQRGDILYT*HQPQCPGDLPV
Trigger: AACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCACCTCTTTGTTTCAGTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR TCA 72 bp CCTGCCAATTGTTCACCACCATCACGTTCCACAGTGTaGTCAAAGCAGCAGCAAAGTCGTCAAAGTTGTTGG +
Preference number: 3 (lower is better)
Translates to: PANCSPPSRSTV*SKQQQSRQSCW
Trigger: CCAACAACTTTGACGACTTTGCTGCTGCTTTGATCACACTGTGGAACGTGATGGTGGTGAACAATTGGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
3UTR TCA 72 bp AGCCTCAGCCGTACACTGAAACAAAGCCCTTCTCTCTaGAGCTCCTTGTATCAGGCATTTTGTCTGAACATG +
Preference number: 3 (lower is better)
Translates to: SLSRTLKQSPSL*SSLYQAFCLNM
Trigger: CATGTTCAGACAAAATGCCTGATACAAGGAGCTTCAGAGAGAAGGGCTTTGTTTCAGTGTACGGCTGAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp AGCAGGAAGAAGGGGCGGAGCAGCCGGCGCATCCGCAGGGGCTCCTCACAAGCATCTATGCAGAGCTCCTaGTCGGCTGCAGCACCGGAG +
Preference number: 4 (lower is better)
Translates to: SRKKGRSSRRIRRGSSQASMQSS*SAAAPE
Trigger: CTCCGGTGCTGCAGCCGATCAGGAGCTCTGCATAGA...TGCTTGTGAGGAGCCCCTGCGGATGCGCCGGCTGCTCCGCCCCTTCTTCCTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
CDS-3UTR CCA 90 bp TGGGCCCAGGCCAGCATCTCTGTCCTGTCACCCCAGCAAGGAAGCCACTCTGATCAGCTGGCCCGGCCCTaGAGGCGAGGACTTCGTAGG +
Preference number: 4 (lower is better)
Translates to: WAQASISVLSPQQGSHSDQLARP*RRGLRR
Trigger: CCTACGAAGTCCTCGCCTCCAGGGCCGGGCCAGCTG...ATCAGAGTGGCTTCCTTGCTGGGGTGACAGGACAGAGATGCTGGCCTGGGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp GAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCCAGCTGGCCCGGCCCTaGAGGCGAGGACTTCGTAGG +
Preference number: 4 (lower is better)
Translates to: EDESLSQPLSVSEWSDPGQLARP*RRGLRR
Trigger: CCTACGAAGTCCTCGCCTCCAGGGCCGGGCCAGCTG...GCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTCATCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp ACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATCCCGAGTGGACCTGGCCACTaGCTCGGTCCCGGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: TRLLFPGGTMTPRNRLIPSGPGH*LGPGPE
Trigger: TTCTGGGCCGGGACCGAGGCAGTGGCCAGGTCCACT...CGGGATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp CACGCACTACTGGTGGGGAGCCTAGTGTGGAGCAGGGGTCAGGAAGCATGCATTAGTGGACCTGGCCACTaGCTCGGTCCCGGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: HALLVGSLVWSRGQEACISGPGH*LGPGPE
Trigger: TTCTGGGCCGGGACCGAGGCAGTGGCCAGGTCCACT...AATGCATGCTTCCTGACCCCTGCTCCACACTAGGCTCCCCACCAGTAGTGCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
CDS-3UTR CCA 90 bp CATGGGCCCAGGCCAGCATCTCTGTCCTGTCACCCCAGCAAGGAAGCCACTCTGAGAGACACAGGTGGATaGCCAGCAGCAGCCCGACAC +
Preference number: 4 (lower is better)
Translates to: HGPRPASLSCHPSKEATLRDTGG*PAAARH
Trigger: GTGTCGGGCTGCTGCTGGCCATCCACCTGTGTCTCT...CAGAGTGGCTTCCTTGCTGGGGTGACAGGACAGAGATGCTGGCCTGGGCCCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp TTTCTTGCTCTGCCTCGACCAGTTGCTTCCTCCACAGCATGGGCCCAGGCCAGCGTAGGACAGGTAGCCTaGCAGGCCCAGCGCGAACAC +
Preference number: 4 (lower is better)
Translates to: FLALPRPVASSTAWAQASVGQVA*QAQREH
Trigger: GTGTTCGCGCTGGGCCTGCCAGGCTACCTGTCCTAC...GCTGGCCTGGGCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAAGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp TTGCTCTGCCTCGACCAGTTGCTTCCTCCACAGCATGGGCCCAGGCCAGCATCTGTAGGACAGGTAGCCTaGCAGGCCCAGCGCGAACAC +
Preference number: 4 (lower is better)
Translates to: LLCLDQLLPPQHGPRPASVGQVA*QAQREH
Trigger: GTGTTCGCGCTGGGCCTGCCAGGCTACCTGTCCTAC...AGATGCTGGCCTGGGCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp GGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATAGTGGACCTGGCCACTaGCTCGGTCCCGGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: GNQAAVSRRHDDTSEQVDSGPGH*LGPGPE
Trigger: TTCTGGGCCGGGACCGAGGCAGTGGCCAGGTCCACT...ATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp GAGTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGTCTATGCAGAGCTCCTaGTCGGCTGCAGCACCGGAG +
Preference number: 4 (lower is better)
Translates to: ELLSGTRLLFPGGTMTPRSMQSS*SAAAPE
Trigger: CTCCGGTGCTGCAGCCGATCAGGAGCTCTGCATAGA...CCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp CTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGTTGCTTCCTCCACAAGTGGACCTGGCCACTaGCTCGGTCCCGGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: LTQAPSFLALPRPVASSTSGPGH*LGPGPE
Trigger: TTCTGGGCCGGGACCGAGGCAGTGGCCAGGTCCACT...TGTGGAGGAAGCAACTGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058022.6
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp GAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCAGAGACACAGGTGGATaGCCAGCAGCAGCCCGACAC +
Preference number: 4 (lower is better)
Translates to: EDESLSQPLSVSEWSDPGRDTGG*PAAARH
Trigger: GTGTCGGGCTGCTGCTGGCCATCCACCTGTGTCTCT...GCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTCATCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp CGTGTCATGTCCCAGAGCGACAGTGGGCCATACTGCTCTGGCTTCCAGCAGGATAGAGACACAGGTGGATaGCCAGCAGCAGCCCGACAC +
Preference number: 4 (lower is better)
Translates to: RVMSQSDSGPYCSGFQQDRDTGG*PAAARH
Trigger: GTGTCGGGCTGCTGCTGGCCATCCACCTGTGTCTCT...ATCCTGCTGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp TTCCACATACAGCTGAGTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACAGCTGGCCCGGCCCTaGAGGCGAGGACTTCGTAGG +
Preference number: 4 (lower is better)
Translates to: FHIQLSCCREPGCCFQEAQLARP*RRGLRR
Trigger: CCTACGAAGTCCTCGCCTCCAGGGCCGGGCCAGCTG...TGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAACTCAGCTGTATGTGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp TGGGCCCAGGCCAGCATCTCTGTCCTGTCACCCCAGCAAGGAAGCCACTCTGATGTCCCAGAGCGACAGTaGGCCATACTGCTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: WAQASISVLSPQQGSHSDVPERQ*AILLWL
Trigger: AAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGAC...ATCAGAGTGGCTTCCTTGCTGGGGTGACAGGACAGAGATGCTGGCCTGGGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058022.6
ENSMUST00000208841.2
3UTR CAA 72 bp CCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGTaGCTTCCTCCACAGCATGGGCCCAGGCCAGCATCT +
Preference number: 4 (lower is better)
Translates to: PRHHLFLLCLDQ*LPPQHGPRPAS
Trigger: AGATGCTGGCCTGGGCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp TCACCAAGACAGCTTGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCCTCTATGCAGAGCTCCTaGTCGGCTGCAGCACCGGAG +
Preference number: 4 (lower is better)
Translates to: SPRQLGGATNGGMWPCGASMQSS*SAAAPE
Trigger: CTCCGGTGCTGCAGCCGATCAGGAGCTCTGCATAGA...GGCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058022.6
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp CTCACCAAGACAGCTTGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCTCTATGCAGAGCTCCTaGTCGGCTGCAGCACCGGAG +
Preference number: 4 (lower is better)
Translates to: LTKTAWGSNKWRNVALWCSMQSS*SAAAPE
Trigger: CTCCGGTGCTGCAGCCGATCAGGAGCTCTGCATAGA...GCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058022.6
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp TGTTCATCAGTCGTGTCATGTCCCAGAGCGACAGTGGGCCATACTGCTCTGGCTCCCAGGCAGCAGGTCTaGGTCCAGCACCAGGAACAC +
Preference number: 4 (lower is better)
Translates to: CSSVVSCPRATVGHTALAPRQQV*VQHQEH
Trigger: GTGTTCCTGGTGCTGGACTCAGACCTGCTGCCTGGG...AGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACTGATGAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp TGGGCCCAGGCCAGCATCTCTGTCCTGTCACCCCAGCAAGGAAGCCACTCTGATCTCTGGCTTCCATCCTaGGTGCGGCAATCGGTATAC +
Preference number: 4 (lower is better)
Translates to: WAQASISVLSPQQGSHSDLWLPS*VRQSVY
Trigger: GTATACCGATTGCCGCACTCAGGATGGAAGCCAGAG...ATCAGAGTGGCTTCCTTGCTGGGGTGACAGGACAGAGATGCTGGCCTGGGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS-3UTR CCA 90 bp TCACCAAGACAGCTTGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCCGTGAAGAGACACAGGTaGATGGCCAGCAGCAGCCCG +
Preference number: 4 (lower is better)
Translates to: SPRQLGGATNGGMWPCGAVKRHR*MASSSP
Trigger: CGGGCTGCTGCTGGCCATCCACCTGTGTCTCTTCAC...GGCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp GTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGCAAAGGCCCGGTTCTaGGTATACGCAGGGATCATC +
Preference number: 4 (lower is better)
Translates to: VVGNQAAVSRRHDDTSEQAKARF*VYAGII
Trigger: GATGATCCCTGCGTATACTCAGAACCGGGCCTTTGC...CTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp TTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTCCCAGGCAGCAGGTCTaGGTCCAGCACCAGGAACAC +
Preference number: 4 (lower is better)
Translates to: LSQPLSVSEWSDPGTIFSPRQQV*VQHQEH
Trigger: GTGTTCCTGGTGCTGGACTCAGACCTGCTGCCTGGG...AGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp AGGAATGGAGTCACTCACAGTGTCACGGAAGTGGCATCTGGACGGGTTTGCTACCCCAGGCAGCAGGTCTaGGTCCAGCACCAGGAACAC +
Preference number: 4 (lower is better)
Translates to: RNGVTHSVTEVASGRVCYPRQQV*VQHQEH
Trigger: GTGTTCCTGGTGCTGGACTCAGACCTGCTGCCTGGG...GTAGCAAACCCGTCCAGATGCCACTTCCGTGACACTGTGAGTGACTCCATTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS-3UTR CCA 90 bp GAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCAATGGAGACTGGTATTaGGGCTTCAGCGGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: EDESLSQPLSVSEWSDPGNGDWY*GFSGRS
Trigger: AGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATT...GCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTCATCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp GTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGAATGGAGACTGGTATTaGGGCTTCAGCGGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: VVGNQAAVSRRHDDTSEQNGDWY*GFSGRS
Trigger: AGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATT...CTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp GCTGAGTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTGTCCCAGAGCGACAGTaGGCCATACTGCTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: AELLSGTRLLFPGGTMTPVPERQ*AILLWL
Trigger: AAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGAC...AGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAACTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208328.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp ACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATCCCGTGGGCCATACTGCTCTaGCTTCCCCCAGGACAAAGT +
Preference number: 4 (lower is better)
Translates to: TRLLFPGGTMTPRNRLIPWAILL*LPPGQS
Trigger: ACTTTGTCCTGGGGGAAGCCAGAGCAGTATGGCCCA...CGGGATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR CAA 72 bp TCATGCCAAGGCAGCTTGGGACCTCAGGGGTGGCATTaGGCCTCTCTGGTCTGGTTCCTCATTGGTGACAGG +
Preference number: 4 (lower is better)
Translates to: SCQGSLGPQGWH*ASLVWFLIGDR
Trigger: CCTGTCACCAATGAGGAACCAGACCAGAGAGGCCAAATGCCACCCCTGAGGTCCCAAGCTGCCTTGGCATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
CDS-3UTR TCA 90 bp GTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAAGCAAAGGCCCGGTTCTaGGTATACGCAGGGATCATC +
Preference number: 4 (lower is better)
Translates to: VVVGNQAAVSRRHDDTSEAKARF*VYAGII
Trigger: GATGATCCCTGCGTATACTCAGAACCGGGCCTTTGC...TTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp TCTTCTAGGATATCCCATCATGCTGTGAGCATCTCTTGCCAGCTCAGCAGCAGTAGTGGACCTGGCCACTaGCTCGGTCCCGGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: SSRISHHAVSISCQLSSSSGPGH*LGPGPE
Trigger: TTCTGGGCCGGGACCGAGGCAGTGGCCAGGTCCACT...ACTGCTGCTGAGCTGGCAAGAGATGCTCACAGCATGATGGGATATCCTAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp ACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATCCCGATCATGGAGGAATTCTaGAGCAGGAAGAAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: TRLLFPGGTMTPRNRLIPIMEEF*SRKKGR
Trigger: CCGCCCCTTCTTCCTGCTGCAGAATTCCTCCATGAT...CGGGATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp TTGCTCTGCCTCGACCAGTTGCTTCCTCCACAGCATGGGCCCAGGCCAGCATCTCCTCTCCTGGTCCTGTaGTTCATCCTTCTCACCAAT +
Preference number: 4 (lower is better)
Translates to: LLCLDQLLPPQHGPRPASPLLVL*FILLTN
Trigger: ATTGGTGAGAAGGATGAAGCACAGGACCAGGAGAGG...AGATGCTGGCCTGGGCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp TTCCACATACAGCTGAGTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCAAGAGACACAGGTGGATaGCCAGCAGCAGCCCGACAC +
Preference number: 4 (lower is better)
Translates to: FHIQLSCCREPGCCFQEARDTGG*PAAARH
Trigger: GTGTCGGGCTGCTGCTGGCCATCCACCTGTGTCTCT...TGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAACTCAGCTGTATGTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp AGGAATGGAGTCACTCACAGTGTCACGGAAGTGGCATCTGGACGGGTTTGCTACAGAGACACAGGTGGATaGCCAGCAGCAGCCCGACAC +
Preference number: 4 (lower is better)
Translates to: RNGVTHSVTEVASGRVCYRDTGG*PAAARH
Trigger: GTGTCGGGCTGCTGCTGGCCATCCACCTGTGTCTCT...GTAGCAAACCCGTCCAGATGCCACTTCCGTGACACTGTGAGTGACTCCATTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS-3UTR CCA 90 bp TGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGCAGCTGGCCCGGCCCTaGAGGCGAGGACTTCGTAGG +
Preference number: 4 (lower is better)
Translates to: CTGLGSQMPLRLKAQISLQLARP*RRGLRR
Trigger: CCTACGAAGTCCTCGCCTCCAGGGCCGGGCCAGCTG...CAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp GCCAGAAACAGGTTGATCCAGATAACAGAGGACACCAGCCACCATAGCACAAAACAGCTGGCCCGGCCCTaGAGGCGAGGACTTCGTAGG +
Preference number: 4 (lower is better)
Translates to: ARNRLIQITEDTSHHSTKQLARP*RRGLRR
Trigger: CCTACGAAGTCCTCGCCTCCAGGGCCGGGCCAGCTG...TTTTGTGCTATGGTGGCTGGTGTCCTCTGTTATCTGGATCAACCTGTTTCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp CTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGTCCCAGAGCGACAGTaGGCCATACTGCTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: LSLSGLTQAPSFLALPRPVPERQ*AILLWL
Trigger: AAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGAC...TGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058022.6
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp GGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATATCATGGAGGAATTCTaGAGCAGGAAGAAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: GNQAAVSRRHDDTSEQVDIMEEF*SRKKGR
Trigger: CCGCCCCTTCTTCCTGCTGCAGAATTCCTCCATGAT...ATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp CTGGAGACCTGCCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTGTGTCGGGAACCAGGCTaGTGTTTCCAGGAGGCACGA +
Preference number: 4 (lower is better)
Translates to: LETCQLLSCTGLGSQMPLCREPG*CFQEAR
Trigger: TCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACA...CAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS-3UTR GCA 90 bp GTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAAACTGCCCAAGTTGGGTaGCCAGGTTCTCTGCAATCA +
Preference number: 4 (lower is better)
Translates to: VVVGNQAAVSRRHDDTSETAQVG*PGSLQS
Trigger: TGATTGCAGAGAACCTGGGCACCCAACTTGGGCAGT...TTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
CDS-3UTR CCA 90 bp ACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATCCCGGGCAGTCTGCAGAAATaGAGACTGGTATTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: TRLLFPGGTMTPRNRLIPGSLQK*RLVLGL
Trigger: AAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCC...CGGGATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp AGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTGTAGGACAGGTAGCCTaGCAGGCCCAGCGCGAACAC +
Preference number: 4 (lower is better)
Translates to: RLGFTNATEAEGTDKFVGVGQVA*QAQREH
Trigger: GTGTTCGCGCTGGGCCTGCCAGGCTACCTGTCCTAC...ACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CAA 72 bp GTCCTGGAGACCTGCCAGTTACTGTCCTGTACAGGCTaGGGTTCACAAATGCCACTGAGGCTGAAGGCACAG +
Preference number: 4 (lower is better)
Translates to: VLETCQLLSCTG*GSQMPLRLKAQ
Trigger: CTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTCTCCAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CAA 72 bp CCTAGCTGCTCAAAGCTTCCACATACAGCTGAGTTGTaGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACG +
Preference number: 4 (lower is better)
Translates to: PSCSKLPHTAEL*SGTRLLFPGGT
Trigger: CGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAACTCAGCTGTATGTGGAAGCTTTGAGCAGCTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp TGTTGGGCCAGTAACCTAGCTGCTCAAAGCTTCCACATACAGCTGAGTTGTTGTCCCAGGCAGCAGGTCTaGGTCCAGCACCAGGAACAC +
Preference number: 4 (lower is better)
Translates to: CWASNLAAQSFHIQLSCCPRQQV*VQHQEH
Trigger: GTGTTCCTGGTGCTGGACTCAGACCTGCTGCCTGGG...ACAACAACTCAGCTGTATGTGGAAGCTTTGAGCAGCTAGGTTACTGGCCCAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp AAGCGAAACACAATCAGTGTGTTCATCAGTCGTGTCATGTCCCAGAGCGACAGTCCCAGGCAGCAGGTCTaGGTCCAGCACCAGGAACAC +
Preference number: 4 (lower is better)
Translates to: KRNTISVFISRVMSQSDSPRQQV*VQHQEH
Trigger: GTGTTCCTGGTGCTGGACTCAGACCTGCTGCCTGGG...ACTGTCGCTCTGGGACATGACACGACTGATGAACACACTGATTGTGTTTCGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp GCTCTGCCTCGACCAGTTGCTTCCTCCACAGCATGGGCCCAGGCCAGCATCTCTGCAGGTAGTACAAGATaGAGATGTAGTCAAGAATCC +
Preference number: 4 (lower is better)
Translates to: ALPRPVASSTAWAQASISAGSTR*RCSQES
Trigger: GGATTCTTGACTACATCTTCATCTTGTACTACCTGC...AGAGATGCTGGCCTGGGCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp CTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAATCATGGAGGAATTCTaGAGCAGGAAGAAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: LSLSGLTQAPSFLALPRPIMEEF*SRKKGR
Trigger: CCGCCCCTTCTTCCTGCTGCAGAATTCCTCCATGAT...TGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp TTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACCCTCTCCTGGTCCTGTaGTTCATCCTTCTCACCAAT +
Preference number: 4 (lower is better)
Translates to: LLSGTRLLFPGGTMTPRNPLLVL*FILLTN
Trigger: ATTGGTGAGAAGGATGAAGCACAGGACCAGGAGAGG...GTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp TTCTCACACACAGGCAGGCACACAAGCAAAGTCGTCAAAGTTGTTGGGCCAGTAGACAGTGGGCCATACTaGTCTGGCTTCCCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: FSHTGRHTSKVVKVVGPVDSGPY*SGFPQD
Trigger: GTCCTGGGGGAAGCCAGAGCAGTATGGCCCACTGTC...TACTGGCCCAACAACTTTGACGACTTTGCTTGTGTGCCTGCCTGTGTGTGAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS-3UTR CCA 90 bp CAGAAGAAGAGCCAGAAACAGGTTGATCCAGATAACAGAGGACACCAGCCACCAGTGAAGAGACACAGGTaGATGGCCAGCAGCAGCCCG +
Preference number: 4 (lower is better)
Translates to: QKKSQKQVDPDNRGHQPPVKRHR*MASSSP
Trigger: CGGGCTGCTGCTGGCCATCCACCTGTGTCTCTTCAC...TGGTGGCTGGTGTCCTCTGTTATCTGGATCAACCTGTTTCTGGCTCTTCTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp AGGGTGAGAGATTTTGACTCACTTTCCAGTCCTGGTGCGTTTAGCCTGAAGTGGGTGAAGAGACACAGGTaGATGGCCAGCAGCAGCCCG +
Preference number: 4 (lower is better)
Translates to: RVRDFDSLSSPGAFSLKWVKRHR*MASSSP
Trigger: CGGGCTGCTGCTGGCCATCCACCTGTGTCTCTTCAC...CCACTTCAGGCTAAACGCACCAGGACTGGAAAGTGAGTCAAAATCTCTCACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS-3UTR CCA 90 bp ACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATCCCGTCACATCAGGGTTGTTaGAAGTCGTCAGCAGCACTA +
Preference number: 4 (lower is better)
Translates to: TRLLFPGGTMTPRNRLIPSHQGC*KSSAAL
Trigger: TAGTGCTGCTGACGACTTCCAACAACCCTGATGTGA...CGGGATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp CTCTCATCTCCTGCCTACATGGGGCAGCTTGCCGCTGTCTGTAACTCCAGCTCCCGTTTTCTGAAGCACTaGCAGGAAGGTCTCAGGATT +
Preference number: 4 (lower is better)
Translates to: LSSPAYMGQLAAVCNSSSRFLKH*QEGLRI
Trigger: AATCCTGAGACCTTCCTGCCAGTGCTTCAGAAAACG...GGAGCTGGAGTTACAGACAGCGGCAAGCTGCCCCATGTAGGCAGGAGATGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
3UTR CAA 72 bp CAGAGGACACCAGCCACCATAGCACAAAATACACCATaGACCACGGGCCTGCGTAGCGCTTATAGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: QRTPATIAQNTP*TTGLRSAYRLP
Trigger: TGGAAGCCTATAAGCGCTACGCAGGCCCGTGGTCAATGGTGTATTTTGTGCTATGGTGGCTGGTGTCCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp ATGGTGTTGGCTACCTCAGCCATTGGCTTTATGTTGGGGATGATGCGCAGGAAGGCAAAGGCCCGGTTCTaGGTATACGCAGGGATCATC +
Preference number: 4 (lower is better)
Translates to: MVLATSAIGFMLGMMRRKAKARF*VYAGII
Trigger: GATGATCCCTGCGTATACTCAGAACCGGGCCTTTGC...CTTCCTGCGCATCATCCCCAACATAAAGCCAATGGCTGAGGTAGCCAACACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp GAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCGGAACTGATTATAGATaGTGGCTGTCAGCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: ESLSQPLSVSEWSDPGTIGTDYR*WLSAGS
Trigger: TGAACCTGCTGACAGCCATCATCTATAATCAGTTCC...GATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp CCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCCCTCTCCTGGTCCTGTaGTTCATCCTTCTCACCAAT +
Preference number: 4 (lower is better)
Translates to: PLSVSEWSDPGTIFSCSAPLLVL*FILLTN
Trigger: ATTGGTGAGAAGGATGAAGCACAGGACCAGGAGAGG...GGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp ACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATCCCGATGAACTGGGCAGTCTaGAGAAATGGAGACTGGTAT +
Preference number: 4 (lower is better)
Translates to: TRLLFPGGTMTPRNRLIPMNWAV*RNGDWY
Trigger: ATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCAT...CGGGATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp CCACAGAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCGGCCATCAAACACATTaGTATGGTAGGACAGGTAGC +
Preference number: 4 (lower is better)
Translates to: PQRMSPCPSLCLSLSGLTGHQTH*YGRTGS
Trigger: GCTACCTGTCCTACCATAGCAATGTGTTTGATGGCC...GGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTCATCCTCTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp TGGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGTTGCTTCCTCGCTTCCAGGATCACCTaGCAATTGTTCACCACCATC +
Preference number: 4 (lower is better)
Translates to: WSDPGTIFSCSASTSCFLASRIT*QLFTTI
Trigger: GATGGTGGTGAACAATTGGCAGGTGATCCTGGAAGC...GAGGAAGCAACTGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS-3UTR CCA 90 bp ATCACCTGCCAATTGTTCACCACCATCACGTTCCACAGTGTGATCAAAGCAGCAGTGAAGAGACACAGGTaGATGGCCAGCAGCAGCCCG +
Preference number: 4 (lower is better)
Translates to: ITCQLFTTITFHSVIKAAVKRHR*MASSSP
Trigger: CGGGCTGCTGCTGGCCATCCACCTGTGTCTCTTCAC...TGCTGCTTTGATCACACTGTGGAACGTGATGGTGGTGAACAATTGGCAGGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp CACCCCAGCAAGGAAGCCACTCTGATGTCACCTGCACAGATGCAAGTGTGGGTGTCACATCAGGGTTGTTaGAAGTCGTCAGCAGCACTA +
Preference number: 4 (lower is better)
Translates to: HPSKEATLMSPAQMQVWVSHQGC*KSSAAL
Trigger: TAGTGCTGCTGACGACTTCCAACAACCCTGATGTGA...CACCCACACTTGCATCTGTGCAGGTGACATCAGAGTGGCTTCCTTGCTGGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp GCTGAGTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTTCACATCAGGGTTGTTaGAAGTCGTCAGCAGCACTA +
Preference number: 4 (lower is better)
Translates to: AELLSGTRLLFPGGTMTPSHQGC*KSSAAL
Trigger: TAGTGCTGCTGACGACTTCCAACAACCCTGATGTGA...AGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAACTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp CTCACCAAGACAGCTTGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCCGTTTTCTGAAGCACTaGCAGGAAGGTCTCAGGATT +
Preference number: 4 (lower is better)
Translates to: LTKTAWGSNKWRNVALWCRFLKH*QEGLRI
Trigger: AATCCTGAGACCTTCCTGCCAGTGCTTCAGAAAACG...GCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp CCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTGGCAGTCTGCAGAAATaGAGACTGGTATTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: PCPSLCLSLSGLTQAPSFGSLQK*RLVLGL
Trigger: AAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCC...AAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp GCTACTGCTGAGCAACCACAGAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTGGCAGTCTGCAGAAATaGAGACTGGTATTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: ATAEQPQRMSPCPSLCLSGSLQK*RLVLGL
Trigger: AAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCC...AGACAGACAGAGGCTGGGACAAGGACTCATCCTCTGTGGTTGCTCAGCAGTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CAA 72 bp TCACTCTCTCTCCTTAGCAAGTCTCACCAAGACAGCTaGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTG +
Preference number: 4 (lower is better)
Translates to: SLSLLSKSHQDS*GEQQMEECGPV
Trigger: CACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGAGACTTGCTAAGGAGAGAGAGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp TCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCACGTTCCACAGTGTaGTCAAAGCAGCAGCAAAGT +
Preference number: 4 (lower is better)
Translates to: SLSQPLSVSEWSDPGTIFSRSTV*SKQQQS
Trigger: ACTTTGCTGCTGCTTTGATCACACTGTGGAACGTGA...AAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS-3UTR GCA 90 bp GGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATATGAACTGGGCAGTCTaGAGAAATGGAGACTGGTAT +
Preference number: 4 (lower is better)
Translates to: GNQAAVSRRHDDTSEQVDMNWAV*RNGDWY
Trigger: ATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCAT...ATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp TCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTGGCCATCAAACACATTaGTATGGTAGGACAGGTAGC +
Preference number: 4 (lower is better)
Translates to: SLSQPLSVSEWSDPGTIFGHQTH*YGRTGS
Trigger: GCTACCTGTCCTACCATAGCAATGTGTTTGATGGCC...AAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp TCCTGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTGACAGTGGGCCATACTaGTCTGGCTTCCATCCTGAG +
Preference number: 4 (lower is better)
Translates to: SCTGLGSQMPLRLKAQISDSGPY*SGFHPE
Trigger: CTCAGGATGGAAGCCAGAGCAGTATGGCCCACTGTC...ACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS-3UTR CCA 90 bp CCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCACATCAGGGTTGTTaGAAGTCGTCAGCAGCACTA +
Preference number: 4 (lower is better)
Translates to: PLSVSEWSDPGTIFSCSASHQGC*KSSAAL
Trigger: TAGTGCTGCTGACGACTTCCAACAACCCTGATGTGA...GGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp CCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCACCATCTTTTCGTTTTCTGAAGCACTaGCAGGAAGGTCTCAGGATT +
Preference number: 4 (lower is better)
Translates to: PCPSLCLSLSGLTQAPSFRFLKH*QEGLRI
Trigger: AATCCTGAGACCTTCCTGCCAGTGCTTCAGAAAACG...AAAAGATGGTGCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp AGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTAATGGAGACTGGTATTaGGGCTTCAGCGGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: RLGFTNATEAEGTDKFVGNGDWY*GFSGRS
Trigger: AGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATT...ACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp TCCTGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTAATGGAGACTGGTATTaGGGCTTCAGCGGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: SCTGLGSQMPLRLKAQISNGDWY*GFSGRS
Trigger: AGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATT...ACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp GAGAAAGTTCTCCAGAAGAAGAGCCAGAAACAGGTTGATCCAGATAACAGAGGATCTATGCAGAGCTCCTaGTCGGCTGCAGCACCGGAG +
Preference number: 4 (lower is better)
Translates to: EKVLQKKSQKQVDPDNRGSMQSS*SAAAPE
Trigger: CTCCGGTGCTGCAGCCGATCAGGAGCTCTGCATAGA...TCCTCTGTTATCTGGATCAACCTGTTTCTGGCTCTTCTTCTGGAGAACTTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp CTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCGCAAAGGCCCGGTTCTaGGTATACGCAGGGATCATC +
Preference number: 4 (lower is better)
Translates to: LGFTNATEAEGTDKFVGIAKARF*VYAGII
Trigger: GATGATCCCTGCGTATACTCAGAACCGGGCCTTTGC...GATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp CTGCCAATTGTTCACCACCATCACGTTCCACAGTGTGATCAAAGCAGCAGCAAAGCAAAGGCCCGGTTCTaGGTATACGCAGGGATCATC +
Preference number: 4 (lower is better)
Translates to: LPIVHHHHVPQCDQSSSKAKARF*VYAGII
Trigger: GATGATCCCTGCGTATACTCAGAACCGGGCCTTTGC...TTTGCTGCTGCTTTGATCACACTGTGGAACGTGATGGTGGTGAACAATTGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp GCTACTGCTGAGCAACCACAGAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTGGAACTGATTATAGATaGTGGCTGTCAGCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: ATAEQPQRMSPCPSLCLSGTDYR*WLSAGS
Trigger: TGAACCTGCTGACAGCCATCATCTATAATCAGTTCC...AGACAGACAGAGGCTGGGACAAGGACTCATCCTCTGTGGTTGCTCAGCAGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp GGAAGTGGCATCTGGACGGGTTTGCTACAGACTGACTCTGGCTCCTCTCATCTCGGAACTGATTATAGATaGTGGCTGTCAGCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: GSGIWTGLLQTDSGSSHLGTDYR*WLSAGS
Trigger: TGAACCTGCTGACAGCCATCATCTATAATCAGTTCC...GAGATGAGAGGAGCCAGAGTCAGTCTGTAGCAAACCCGTCCAGATGCCACTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS-3UTR GCA 90 bp AAAGAGGTGACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCATCATGGAGGAATTCTaGAGCAGGAAGAAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: KEVTFSTHDTNPNVLETCIMEEF*SRKKGR
Trigger: CCGCCCCTTCTTCCTGCTGCAGAATTCCTCCATGAT...GCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGTCACCTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp AACACAATCAGTGTGTTCATCAGTCGTGTCATGTCCCAGAGCGACAGTGGGCCACCTCTCCTGGTCCTGTaGTTCATCCTTCTCACCAAT +
Preference number: 4 (lower is better)
Translates to: NTISVFISRVMSQSDSGPPLLVL*FILLTN
Trigger: ATTGGTGAGAAGGATGAAGCACAGGACCAGGAGAGG...TGGCCCACTGTCGCTCTGGGACATGACACGACTGATGAACACACTGATTGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp AGTGGTCTGACCCAGGCACCATCTTTTCTTGCTCTGCCTCGACCAGTTGCTTCCATGAACTGGGCAGTCTaGAGAAATGGAGACTGGTAT +
Preference number: 4 (lower is better)
Translates to: SGLTQAPSFLALPRPVASMNWAV*RNGDWY
Trigger: ATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCAT...GGAAGCAACTGGTCGAGGCAGAGCAAGAAAAGATGGTGCCTGGGTCAGACCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp AGTCGTCAAAGTTGTTGGGCCAGTAACCTAGCTGCTCAAAGCTTCCACATACAGAATGGAGACTGGTATTaGGGCTTCAGCGGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: SRQSCWASNLAAQSFHIQNGDWY*GFSGRS
Trigger: AGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATT...CTGTATGTGGAAGCTTTGAGCAGCTAGGTTACTGGCCCAACAACTTTGACGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp AGGACCCTTGGAAGTCACTCTCTCTCCTTAGCAAGTCTCACCAAGACAGCTTGGGGCAGTCTGCAGAAATaGAGACTGGTATTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: RTLGSHSLSLASLTKTAWGSLQK*RLVLGL
Trigger: AAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCC...CCAAGCTGTCTTGGTGAGACTTGCTAAGGAGAGAGAGTGACTTCCAAGGGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp CTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCAAGGAGAGCTGAGGCCTTCTCAGTTCCTCCTCCTTaGGCTCTTCTAGGATATCCC +
Preference number: 4 (lower is better)
Translates to: LRLKAQISLWVSRRAEAFSVPPP*ALLGYP
Trigger: GGGATATCCTAGAAGAGCCCAAGGAGGAGGAACTGA...GAAGGCCTCAGCTCTCCTTGATACCCACAAACTTATCTGTGCCTTCAGCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
3UTR CAA 72 bp TATCAAGGAGAGCTGAGGCCTTCTTGCTTCCTGGCTTaGAGGAAGGACCCTTGGAAGTCACTCTCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: YQGELRPSCFLA*RKDPWKSLSLL
Trigger: AAGGAGAGAGAGTGACTTCCAAGGGTCCTTCCTCAAAGCCAGGAAGCAAGAAGGCCTCAGCTCTCCTTGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
3UTR CAA 72 bp AATGCCCTCAAGTTAGGGATTAGGCCCAGGATGGTGTaGGCTACCTCAGCCATTGGCTTTATGTTGGGGATG +
Preference number: 4 (lower is better)
Translates to: NALKLGIRPRMV*ATSAIGFMLGM
Trigger: CATCCCCAACATAAAGCCAATGGCTGAGGTAGCCAACACCATCCTGGGCCTAATCCCTAACTTGAGGGCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000209047.2
3UTR CAA 72 bp GGGTGTTTGTGTAGCTTCTCCATCAGTTCCTCCTCCTaGGGCTCTTCTAGGATATCCCTGAACATGAGCTCC +
Preference number: 4 (lower is better)
Translates to: GCLCSFSISSSS*GSSRISLNMSS
Trigger: GGAGCTCATGTTCAGGGATATCCTAGAAGAGCCCAAGGAGGAGGAACTGATGGAGAAGCTACACAAACACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
3UTR CAA 72 bp AGGGGTGGCATTTGGCCTCTCTGGTCTGGTTCCTCATaGGTGACAGGGGTTCCCATTAGCTTTGTCTATCTA +
Preference number: 4 (lower is better)
Translates to: RGGIWPLWSGSS*VTGVPISFVYL
Trigger: TAGATAGACAAAGCTAATGGGAACCCCTGTCACCAATGAGGAACCAGACCAGAGAGGCCAAATGCCACCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209156.2
3UTR CAA 72 bp GGGTGTTTGTGTAGCTTCTCCATCAGTTCCTCCTCCTaGGGCTCTTCTAGGATATCCCATCATGCTGTGAGC +
Preference number: 4 (lower is better)
Translates to: GCLCSFSISSSS*GSSRISHHAVS
Trigger: GCTCACAGCATGATGGGATATCCTAGAAGAGCCCAAGGAGGAGGAACTGATGGAGAAGCTACACAAACACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp CTGGAGACCTGCCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTGGGAACTGATTATAGATaGTGGCTGTCAGCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: LETCQLLSCTGLGSQMPLGTDYR*WLSAGS
Trigger: TGAACCTGCTGACAGCCATCATCTATAATCAGTTCC...CAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTCTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp GTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGAATTCCCAAGGAACTTaGCAGAACATGTTGATATCA +
Preference number: 4 (lower is better)
Translates to: VVGNQAAVSRRHDDTSEQNSQGT*QNMLIS
Trigger: TGATATCAACATGTTCTGTCAAGTTCCTTGGGAATT...CTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp TTCTCACACACAGGCAGGCACACAAGCAAAGTCGTCAAAGTTGTTGGGCCAGTACCTCTCCTGGTCCTGTaGTTCATCCTTCTCACCAAT +
Preference number: 4 (lower is better)
Translates to: FSHTGRHTSKVVKVVGPVPLLVL*FILLTN
Trigger: ATTGGTGAGAAGGATGAAGCACAGGACCAGGAGAGG...TACTGGCCCAACAACTTTGACGACTTTGCTTGTGTGCCTGCCTGTGTGTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS-3UTR GCA 90 bp GACCTGCCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTATGAACTGGGCAGTCTaGAGAAATGGAGACTGGTAT +
Preference number: 4 (lower is better)
Translates to: DLPVTVLYRLGFTNATEAMNWAV*RNGDWY
Trigger: ATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCAT...AGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp TTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCAGACAGTGGGCCATACTaGTCTGGCTTCCAGCAGGAT +
Preference number: 4 (lower is better)
Translates to: LGSQMPLRLKAQISLWVSDSGPY*SGFQQD
Trigger: ATCCTGCTGGAAGCCAGAGCAGTATGGCCCACTGTC...TGATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
3UTR CAA 72 bp ATAAGTTTGTGGGTATCAAGGAGAGCTGAGGCCTTCTaGCTTCCTGGCTTTGAGGAAGGACCCTTGGAAGTC +
Preference number: 4 (lower is better)
Translates to: ISLWVSRRAEAF*LPGFEEGPLEV
Trigger: GACTTCCAAGGGTCCTTCCTCAAAGCCAGGAAGCAAGAAGGCCTCAGCTCTCCTTGATACCCACAAACTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp ACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCCAGTTACTGGGCCATCAAACACATTaGTATGGTAGGACAGGTAGC +
Preference number: 4 (lower is better)
Translates to: TFSTHDTNPNVLETCQLLGHQTH*YGRTGS
Trigger: GCTACCTGTCCTACCATAGCAATGTGTTTGATGGCC...CAGTAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR GCA 90 bp ATGACCTTGAGGGTCCCATCTGTGGAGAAAGTTCTCCAGAAGAAGAGCCAGAAAACATACCATCCTGAGTaGGGCAATCGGTATACAGCC +
Preference number: 4 (lower is better)
Translates to: MTLRVPSVEKVLQKKSQKTYHPE*GNRYTA
Trigger: GGCTGTATACCGATTGCCGCACTCAGGATGGTATGT...TTTCTGGCTCTTCTTCTGGAGAACTTTCTCCACAGATGGGACCCTCAAGGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
CDS-3UTR CCA 90 bp AGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTTCACATCAGGGTTGTTaGAAGTCGTCAGCAGCACTA +
Preference number: 4 (lower is better)
Translates to: RLGFTNATEAEGTDKFVGSHQGC*KSSAAL
Trigger: TAGTGCTGCTGACGACTTCCAACAACCCTGATGTGA...ACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp AGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTCGTTTTCTGAAGCACTaGCAGGAAGGTCTCAGGATT +
Preference number: 4 (lower is better)
Translates to: RLGFTNATEAEGTDKFVGRFLKH*QEGLRI
Trigger: AATCCTGAGACCTTCCTGCCAGTGCTTCAGAAAACG...ACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp TGTTGGGCCAGTAACCTAGCTGCTCAAAGCTTCCACATACAGCTGAGTTGTTGTGGCAGTCTGCAGAAATaGAGACTGGTATTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: CWASNLAAQSFHIQLSCCGSLQK*RLVLGL
Trigger: AAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCC...ACAACAACTCAGCTGTATGTGGAAGCTTTGAGCAGCTAGGTTACTGGCCCAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp TTCCACATACAGCTGAGTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACTTGACAGAACATGTTaGTATCAGAGAAGAGATCGT +
Preference number: 4 (lower is better)
Translates to: FHIQLSCCREPGCCFQEALDRTC*YQRRDR
Trigger: ACGATCTCTTCTCTGATATCAACATGTTCTGTCAAG...TGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAACTCAGCTGTATGTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
CDS-3UTR GCA 90 bp AGAAAGTTCTCCAGAAGAAGAGCCAGAAACAGGTTGATCCAGATAACAGAGGACATCATGGAGGAATTCTaGAGCAGGAAGAAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: RKFSRRRARNRLIQITEDIMEEF*SRKKGR
Trigger: CCGCCCCTTCTTCCTGCTGCAGAATTCCTCCATGAT...GTCCTCTGTTATCTGGATCAACCTGTTTCTGGCTCTTCTTCTGGAGAACTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp ATCACCTGCCAATTGTTCACCACCATCACGTTCCACAGTGTGATCAAAGCAGCAGGAACTGATTATAGATaGTGGCTGTCAGCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: ITCQLFTTITFHSVIKAAGTDYR*WLSAGS
Trigger: TGAACCTGCTGACAGCCATCATCTATAATCAGTTCC...TGCTGCTTTGATCACACTGTGGAACGTGATGGTGGTGAACAATTGGCAGGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp ACATTCTCTACACATGACACCAACCCCAATGTCCTGGAGACCTGCCAGTTACTGGCAGGTAGTACAAGATaGAGATGTAGTCAAGAATCC +
Preference number: 4 (lower is better)
Translates to: TFSTHDTNPNVLETCQLLAGSTR*RCSQES
Trigger: GGATTCTTGACTACATCTTCATCTTGTACTACCTGC...CAGTAACTGGCAGGTCTCCAGGACATTGGGGTTGGTGTCATGTGTAGAGAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR TCA 90 bp TTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGTGGGTATCAAATCACATACCATCCTaGGTGCGGCAATCGGTATAC +
Preference number: 4 (lower is better)
Translates to: LGSQMPLRLKAQISLWVSNHIPS*VRQSVY
Trigger: GTATACCGATTGCCGCACTCAGGATGGTATGTGATT...TGATACCCACAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
CDS-3UTR GCA 90 bp CTGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTATGAACTGGGCAGTCTaGAGAAATGGAGACTGGTAT +
Preference number: 4 (lower is better)
Translates to: LYRLGFTNATEAEGTDKFMNWAV*RNGDWY
Trigger: ATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCAT...AAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CCA 90 bp GTACAAGATGAAGATGTAGTCAAGAATCTGAGGACTGACAGAATGCTCAAAATTGTGAAGAGACACAGGTaGATGGCCAGCAGCAGCCCG +
Preference number: 4 (lower is better)
Translates to: VQDEDVVKNLRTDRMLKIVKRHR*MASSSP
Trigger: CGGGCTGCTGCTGGCCATCCACCTGTGTCTCTTCAC...AATTTTGAGCATTCTGTCAGTCCTCAGATTCTTGACTACATCTTCATCTTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
CDS-3UTR CCA 90 bp GAGAAAGTTCTCCAGAAGAAGAGCCAGAAACAGGTTGATCCAGATAACAGAGGACGTTTTCTGAAGCACTaGCAGGAAGGTCTCAGGATT +
Preference number: 4 (lower is better)
Translates to: EKVLQKKSQKQVDPDNRGRFLKH*QEGLRI
Trigger: AATCCTGAGACCTTCCTGCCAGTGCTTCAGAAAACG...TCCTCTGTTATCTGGATCAACCTGTTTCTGGCTCTTCTTCTGGAGAACTTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR TCA 90 bp TCTGTGGAGAAAGTTCTCCAGAAGAAGAGCCAGAAACAGGTTGATCCAGATAACGCAGGTAGTACAAGATaGAGATGTAGTCAAGAATCC +
Preference number: 4 (lower is better)
Translates to: SVEKVLQKKSQKQVDPDNAGSTR*RCSQES
Trigger: GGATTCTTGACTACATCTTCATCTTGTACTACCTGC...GTTATCTGGATCAACCTGTTTCTGGCTCTTCTTCTGGAGAACTTTCTCCACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS GCA 90 bp TTCAATGAAGACCACAGCCTGGTCTATGCAGAGCTCCTGATCGGCTaGAGCACCGGAGTGGACCTGGCCACTGCCTCGGTCCCGGCCCAG +
Preference number: 5 (lower is better)
Translates to: FNEDHSLVYAELLIG*STGVDLATASVPAQ
Trigger: CTGGGCCGGGACCGAGGCAGTGGCCAGGTCCACTCCGGTGCTGCAGCCGATCAGGAGCTCTGCATAGACCAGGCTGTGGTCTTCATTGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS CCA 90 bp GCACTGGCAGGAAGGTCTCAGGATTCACCCCAACTAACTCAGGGGTaGTTCCAGCTGGCCCGGCCCTGGAGGCGAGGACTTCGTAGGCTG +
Preference number: 5 (lower is better)
Translates to: ALAGRSQDSPQLTQG*FQLARPWRRGLRRL
Trigger: CAGCCTACGAAGTCCTCGCCTCCAGGGCCGGGCCAGCTGGAACCACCCCTGAGTTAGTTGGGGTGAATCCTGAGACCTTCCTGCCAGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS TCA 90 bp ATGGCGTCTTCAATGAAGACCACAGCCTGGTCTATGCAGAGCTCCTaGTCGGCTGCAGCACCGGAGTGGACCTGGCCACTGCCTCGGTCC +
Preference number: 5 (lower is better)
Translates to: MASSMKTTAWSMQSS*SAAAPEWTWPLPRS
Trigger: GGACCGAGGCAGTGGCCAGGTCCACTCCGGTGCTGCAGCCGATCAGGAGCTCTGCATAGACCAGGCTGTGGTCTTCATTGAAGACGCCAT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS GCA 90 bp CAGGCCACAGGGCGGCTGCCAGGGCTGGGAACGGTAGCGCACATCTaGAGTCTTTGTGAAGGAAGATGGGACCTCCACAAAAGCCAAGAT +
Preference number: 5 (lower is better)
Translates to: QATGRLPGLGTVAHI*SLCEGRWDLHKSQD
Trigger: ATCTTGGCTTTTGTGGAGGTCCCATCTTCCTTCACAAAGACTGCAGATGTGCGCTACCGTTCCCAGCCCTGGCAGCCGCCCTGTGGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS CCA 90 bp CATCAGTCGTGTCATGTCCCAGAGCGACAGTGGGCCATACTGCTCTaGCTTCCCCCAGGACAAAGTCATCACGTTCCCCAGGCAGCAGGT +
Preference number: 5 (lower is better)
Translates to: HQSCHVPERQWAILL*LPPGQSHHVPQAAG
Trigger: ACCTGCTGCCTGGGGAACGTGATGACTTTGTCCTGGGGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACTGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS GCA 90 bp TCCCAGAGCGACAGTGGGCCATACTGCTCTGGCTTCCATCCTGAGTaGGGCAATCGGTATACAGCCAGGGTGCAAATCTCCGAAACCAGC +
Preference number: 5 (lower is better)
Translates to: SQSDSGPYCSGFHPE*GNRYTARVQISETS
Trigger: GCTGGTTTCGGAGATTTGCACCCTGGCTGTATACCGATTGCCGCACTCAGGATGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS TCA 90 bp CATGTCCCAGAGCGACAGTGGGCCATACTGCTCTGGCTTCCATCCTaGGTGCGGCAATCGGTATACAGCCAGGGTGCAAATCTCCGAAAC +
Preference number: 5 (lower is better)
Translates to: HVPERQWAILLWLPS*VRQSVYSQGANLRN
Trigger: GTTTCGGAGATTTGCACCCTGGCTGTATACCGATTGCCGCACTCAGGATGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS-3UTR CAA 90 bp GTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGCCATTGGCTTTATGTaGGGGATGATGCGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: VVGNQAAVSRRHDDTSEQAIGFM*GMMRRK
Trigger: CTTCCTGCGCATCATCCCCAACATAAAGCCAATGGC...CTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208328.2
ENSMUST00000208841.2
CDS-3UTR CAA 90 bp ACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAACAGGTTGATCCCGATCATCACATCAGGGTaGTTGGAAGTCGTCAGCAGC +
Preference number: 5 (lower is better)
Translates to: TRLLFPGGTMTPRNRLIPIITSG*LEVVSS
Trigger: GCTGCTGACGACTTCCAACAACCCTGATGTGATGAT...CGGGATCAACCTGTTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CAA 90 bp TCACCAAGACAGCTTGGGGGAGCAACAAATGGAGGAATGTGGCCCTGTGGTGCCGCCATTGGCTTTATGTaGGGGATGATGCGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: SPRQLGGATNGGMWPCGAAIGFM*GMMRRK
Trigger: CTTCCTGCGCATCATCCCCAACATAAAGCCAATGGC...GGCACCACAGGGCCACATTCCTCCATTTGTTGCTCCCCCAAGCTGTCTTGGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058022.6
ENSMUST00000208841.2
CDS-3UTR CAA 90 bp GAGGATGAGTCCTTGTCCCAGCCTCTGTCTGTCTCTGAGTGGTCTGACCCAGGCATCAGTTCCTCCTCCTaGGGCTCTTCTAGGATATCC +
Preference number: 5 (lower is better)
Translates to: EDESLSQPLSVSEWSDPGISSSS*GSSRIS
Trigger: GGATATCCTAGAAGAGCCCAAGGAGGAGGAACTGAT...GCCTGGGTCAGACCACTCAGAGACAGACAGAGGCTGGGACAAGGACTCATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS TCA 90 bp CTGCCCAAGTTGGGTGCCCAGGTTCTCTGCAATCACATACCATCCTaGGTGCGGCAATCGGTATACAGCCAGGGTGCAAATCTCCGAAAC +
Preference number: 5 (lower is better)
Translates to: LPKLGAQVLCNHIPS*VRQSVYSQGANLRN
Trigger: GTTTCGGAGATTTGCACCCTGGCTGTATACCGATTGCCGCACTCAGGATGGTATGTGATTGCAGAGAACCTGGGCACCCAACTTGGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
CDS GCA 90 bp CCAAGTTGGGTGCCCAGGTTCTCTGCAATCACATACCATCCTGAGTaGGGCAATCGGTATACAGCCAGGGTGCAAATCTCCGAAACCAGC +
Preference number: 5 (lower is better)
Translates to: PSWVPRFSAITYHPE*GNRYTARVQISETS
Trigger: GCTGGTTTCGGAGATTTGCACCCTGGCTGTATACCGATTGCCGCACTCAGGATGGTATGTGATTGCAGAGAACCTGGGCACCCAACTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
CDS-3UTR CAA 90 bp CCATCTTTTCTTGCTCTGCCTCGACCAGTTGCTTCCTCCACAGCATGGGCCCAGATCATCACATCAGGGTaGTTGGAAGTCGTCAGCAGC +
Preference number: 5 (lower is better)
Translates to: PSFLALPRPVASSTAWAQIITSG*LEVVSS
Trigger: GCTGCTGACGACTTCCAACAACCCTGATGTGATGAT...CTGGGCCCATGCTGTGGAGGAAGCAACTGGTCGAGGCAGAGCAAGAAAAGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS-3UTR CAA 90 bp GTTGTTGTCGGGAACCAGGCTGCTGTTTCCAGGAGGCACGATGACACCTCGGAAATCATCACATCAGGGTaGTTGGAAGTCGTCAGCAGC +
Preference number: 5 (lower is better)
Translates to: VVVGNQAAVSRRHDDTSEIITSG*LEVVSS
Trigger: GCTGCTGACGACTTCCAACAACCCTGATGTGATGAT...TTCCGAGGTGTCATCGTGCCTCCTGGAAACAGCAGCCTGGTTCCCGACAACAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CAA 90 bp ACACCAGCCACCATAGCACAAAATACACCATTGACCACGGGCCTGCGTAGCGCTGCCATTGGCTTTATGTaGGGGATGATGCGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: TPATIAQNTPLTTGLRSAAIGFM*GMMRRK
Trigger: CTTCCTGCGCATCATCCCCAACATAAAGCCAATGGC...AGCGCTACGCAGGCCCGTGGTCAATGGTGTATTTTGTGCTATGGTGGCTGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208841.2
CDS CCA 90 bp CACAATCAGTGTGTTCATCAGTCGTGTCATGTCCCAGAGCGACAGTaGGCCATACTGCTCTGGCTTCCCCCAGGACAAAGTCATCACGTT +
Preference number: 5 (lower is better)
Translates to: HNQCVHQSCHVPERQ*AILLWLPPGQSHHV
Trigger: AACGTGATGACTTTGTCCTGGGGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACTGATGAACACACTGATTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS TCA 90 bp CACACGTTGGCAGACGTTCGAGTAATACCAGCGGTAAAGCCACAATaGACCAGCATCCATGCGGTGGTAGATGGAGCGGTACTTTATGGC +
Preference number: 5 (lower is better)
Translates to: HTLADVRVIPAVKPQ*TSIHAVVDGAVLYG
Trigger: GCCATAAAGTACCGCTCCATCTACCACCGCATGGATGCTGGTTCATTGTGGCTTTACCGCTGGTATTACTCGAACGTCTGCCAACGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS CCA 90 bp TGGCTAAAGATGAACTGGGCAGTCTGCAGAAATGGAGACTGGTATTaGGGCTTCAGCGGGCGCTCTTTGGCCAAACCTTTGTCAACCTCA +
Preference number: 5 (lower is better)
Translates to: WLKMNWAVCRNGDWY*GFSGRSLAKPLSTS
Trigger: TGAGGTTGACAAAGGTTTGGCCAAAGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCATCTTTAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CAA 90 bp CTGGAGACCTGCCAGTTACTGTCCTGTACAGGCTTGGGTTCACAAATGCCACTGAGGATCACCTGCCAATaGTTCACCACCATCACGTTC +
Preference number: 5 (lower is better)
Translates to: LETCQLLSCTGLGSQMPLRITCQ*FTTITF
Trigger: GAACGTGATGGTGGTGAACAATTGGCAGGTGATCCT...CAGTGGCATTTGTGAACCCAAGCCTGTACAGGACAGTAACTGGCAGGTCTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS CCA 90 bp TCTGCAGAAATGGAGACTGGTATTGGGGCTTCAGCGGGCGCTCTTTaGCCAAACCTTTGTCAACCTCATCGAAGAGTTTCTGGAACTCAT +
Preference number: 5 (lower is better)
Translates to: SAEMETGIGASAGAL*PNLCQPHRRVSGTH
Trigger: ATGAGTTCCAGAAACTCTTCGATGAGGTTGACAAAGGTTTGGCCAAAGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATTTCTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CAA 90 bp GATGCGCAGGAAGCGAAACACAATCAGTGTGTTCATCAGTCGTGTCATGTCCCAATCATCACATCAGGGTaGTTGGAAGTCGTCAGCAGC +
Preference number: 5 (lower is better)
Translates to: DAQEAKHNQCVHQSCHVPIITSG*LEVVSS
Trigger: GCTGCTGACGACTTCCAACAACCCTGATGTGATGAT...TGGGACATGACACGACTGATGAACACACTGATTGTGTTTCGCTTCCTGCGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208148.2
ENSMUST00000209047.2
CDS TCA 90 bp CCTATCAAGGTGAAGACTATGAAGAAGAGAGCAAAGGCCCGGTTCTaGGTATACGCAGGGATCATCACATCAGGGTTGTTGGAAGTCGTC +
Preference number: 5 (lower is better)
Translates to: PIKVKTMKKRAKARF*VYAGIITSGLLEVV
Trigger: GACGACTTCCAACAACCCTGATGTGATGATCCCTGCGTATACTCAGAACCGGGCCTTTGCTCTCTTCTTCATAGTCTTCACCTTGATAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CAA 90 bp TGTACAGGCTTGGGTTCACAAATGCCACTGAGGCTGAAGGCACAGATAAGTTTGATCATCACATCAGGGTaGTTGGAAGTCGTCAGCAGC +
Preference number: 5 (lower is better)
Translates to: CTGLGSQMPLRLKAQISLIITSG*LEVVSS
Trigger: GCTGCTGACGACTTCCAACAACCCTGATGTGATGAT...CAAACTTATCTGTGCCTTCAGCCTCAGTGGCATTTGTGAACCCAAGCCTGTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208841.2
CDS CCA 90 bp TTTGTCAACCTCATCGAAGAGTTTCTGGAACTCATCAGCCAGCATTaGGCGGCCTTCATAGGACTGCACCTTCTGCATAATGGCTTGTTT +
Preference number: 5 (lower is better)
Translates to: FVNLIEEFLELISQH*AAFIGLHLLHNGLF
Trigger: AAACAAGCCATTATGCAGAAGGTGCAGTCCTATGAAGGCCGCCCAATGCTGGCTGATGAGTTCCAGAAACTCTTCGATGAGGTTGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS-3UTR CAA 90 bp TGTTGGGCCAGTAACCTAGCTGCTCAAAGCTTCCACATACAGCTGAGTTGTTGTCAATTCCCAAGGAACTaGACAGAACATGTTGATATC +
Preference number: 5 (lower is better)
Translates to: CWASNLAAQSFHIQLSCCQFPRN*TEHVDI
Trigger: GATATCAACATGTTCTGTCAAGTTCCTTGGGAATTG...ACAACAACTCAGCTGTATGTGGAAGCTTTGAGCAGCTAGGTTACTGGCCCAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209047.2
CDS TCA 90 bp AGGTCTGTAGAGATTTCATTAGGTAGCCACGGAACTGATTATAGATaGTGGCTGTCAGCAGGTTCATCAGAAACAAGCTTCCTATCAAGG +
Preference number: 5 (lower is better)
Translates to: RSVEISLGSHGTDYR*WLSAGSSETSFLSR
Trigger: CCTTGATAGGAAGCTTGTTTCTGATGAACCTGCTGACAGCCATCATCTATAATCAGTTCCGTGGCTACCTAATGAAATCTCTACAGACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS GCA 72 bp GACCACAGCCTGGTCTATGCAGAGCTCCTGATCGGCTaGAGCACCGGAGTGGACCTGGCCACTGCCTCGGTC +
Preference number: 6 (lower is better)
Translates to: DHSLVYAELLIG*STGVDLATASV
Trigger: GACCGAGGCAGTGGCCAGGTCCACTCCGGTGCTGCAGCCGATCAGGAGCTCTGCATAGACCAGGCTGTGGTC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS CCA 72 bp GGAAGGTCTCAGGATTCACCCCAACTAACTCAGGGGTaGTTCCAGCTGGCCCGGCCCTGGAGGCGAGGACTT +
Preference number: 6 (lower is better)
Translates to: GRSQDSPQLTQG*FQLARPWRRGL
Trigger: AAGTCCTCGCCTCCAGGGCCGGGCCAGCTGGAACCACCCCTGAGTTAGTTGGGGTGAATCCTGAGACCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS GCA 72 bp GGGCGGCTGCCAGGGCTGGGAACGGTAGCGCACATCTaGAGTCTTTGTGAAGGAAGATGGGACCTCCACAAA +
Preference number: 6 (lower is better)
Translates to: GRLPGLGTVAHI*SLCEGRWDLHK
Trigger: TTTGTGGAGGTCCCATCTTCCTTCACAAAGACTGCAGATGTGCGCTACCGTTCCCAGCCCTGGCAGCCGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS GCA 72 bp GACAGTGGGCCATACTGCTCTGGCTTCCATCCTGAGTaGGGCAATCGGTATACAGCCAGGGTGCAAATCTCC +
Preference number: 6 (lower is better)
Translates to: DSGPYCSGFHPE*GNRYTARVQIS
Trigger: GGAGATTTGCACCCTGGCTGTATACCGATTGCCGCACTCAGGATGGAAGCCAGAGCAGTATGGCCCACTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS GCA 72 bp AGTCGTGTCATGTCCCAGAGCGACAGTGGGCCATACTaGTCTGGCTTCCATCCTGAGTGCGGCAATCGGTAT +
Preference number: 6 (lower is better)
Translates to: SRVMSQSDSGPY*SGFHPECGNRY
Trigger: ATACCGATTGCCGCACTCAGGATGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058022.6
CDS GCA 72 bp AGTCGTGTCATGTCCCAGAGCGACAGTGGGCCATACTaGTCTGGCTTCCCCCAGGACAAAGTCATCACGTTC +
Preference number: 6 (lower is better)
Translates to: SRVMSQSDSGPY*SGFPQDKVITF
Trigger: GAACGTGATGACTTTGTCCTGGGGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS CCA 72 bp TGTGTTCATCAGTCGTGTCATGTCCCAGAGCGACAGTaGGCCATACTGCTCTGGCTTCCCCCAGGACAAAGT +
Preference number: 6 (lower is better)
Translates to: CVHQSCHVPERQ*AILLWLPPGQS
Trigger: ACTTTGTCCTGGGGGAAGCCAGAGCAGTATGGCCCACTGTCGCTCTGGGACATGACACGACTGATGAACACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208328.2
CDS GCA 72 bp AAGGTTCCGGAAGTAGGCCAGCCTCTCCTGGTCCTGTaGTTCATCCTTCTCACCAATGGTGAACAGCAGCAT +
Preference number: 6 (lower is better)
Translates to: KVPEVGQPLLVL*FILLTNGEQQH
Trigger: ATGCTGCTGTTCACCATTGGTGAGAAGGATGAAGCACAGGACCAGGAGAGGCTGGCCTACTTCCGGAACCTT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS GCA 72 bp GTGCCCAGGTTCTCTGCAATCACATACCATCCTGAGTaGGGCAATCGGTATACAGCCAGGGTGCAAATCTCC +
Preference number: 6 (lower is better)
Translates to: VPRFSAITYHPE*GNRYTARVQIS
Trigger: GGAGATTTGCACCCTGGCTGTATACCGATTGCCGCACTCAGGATGGTATGTGATTGCAGAGAACCTGGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
CDS CCA 72 bp ATGAACTGGGCAGTCTGCAGAAATGGAGACTGGTATTaGGGCTTCAGCGGGCGCTCTTTGGCCAAACCTTTG +
Preference number: 6 (lower is better)
Translates to: MNWAVCRNGDWY*GFSGRSLAKPL
Trigger: CAAAGGTTTGGCCAAAGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS CCA 72 bp GTGGTGGCTAAAGATGAACTGGGCAGTCTGCAGAAATaGAGACTGGTATTGGGGCTTCAGCGGGCGCTCTTT +
Preference number: 6 (lower is better)
Translates to: VVAKDELGSLQK*RLVLGLQRALF
Trigger: AAAGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCATCTTTAGCCACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS CAA 72 bp GATGAACTGGGCAGTCTGCAGAAATGGAGACTGGTATaGGGGCTTCAGCGGGCGCTCTTTGGCCAAACCTTT +
Preference number: 6 (lower is better)
Translates to: DELGSLQKWRLV*GLQRALFGQTF
Trigger: AAAGGTTTGGCCAAAGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS CAA 90 bp GTGGCTAAAGATGAACTGGGCAGTCTGCAGAAATGGAGACTGGTATaGGGGCTTCAGCGGGCGCTCTTTGGCCAAACCTTTGTCAACCTC +
Preference number: 6 (lower is better)
Translates to: VAKDELGSLQKWRLV*GLQRALFGQTFVNL
Trigger: GAGGTTGACAAAGGTTTGGCCAAAGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATTTCTGCAGACTGCCCAGTTCATCTTTAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS TCA 72 bp GCAGACGTTCGAGTAATACCAGCGGTAAAGCCACAATaGACCAGCATCCATGCGGTGGTAGATGGAGCGGTA +
Preference number: 6 (lower is better)
Translates to: ADVRVIPAVKPQ*TSIHAVVDGAV
Trigger: TACCGCTCCATCTACCACCGCATGGATGCTGGTTCATTGTGGCTTTACCGCTGGTATTACTCGAACGTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS TCA 72 bp TTGGGTGCCCAGGTTCTCTGCAATCACATACCATCCTaGGTGCGGCAATCGGTATACAGCCAGGGTGCAAAT +
Preference number: 6 (lower is better)
Translates to: LGAQVLCNHIPS*VRQSVYSQGAN
Trigger: ATTTGCACCCTGGCTGTATACCGATTGCCGCACTCAGGATGGTATGTGATTGCAGAGAACCTGGGCACCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208148.2
CDS CAA 90 bp CAGCATTGGGCGGCCTTCATAGGACTGCACCTTCTGCATAATGGCTaGTTTGTGGGTTTTGTTCAGCTGCGTTTTCTGAAGCACTGGCAG +
Preference number: 6 (lower is better)
Translates to: QHWAAFIGLHLLHNG*FVGFVQLRFLKHWQ
Trigger: CTGCCAGTGCTTCAGAAAACGCAGCTGAACAAAACCCACAAACAAGCCATTATGCAGAAGGTGCAGTCCTATGAAGGCCGCCCAATGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS CCA 72 bp TCTGAGTATACGCAGGGATCATCACATCAGGGTTGTTaGAAGTCGTCAGCAGCACTAGGAGTGAGGTCAGTG +
Preference number: 6 (lower is better)
Translates to: SEYTQGSSHQGC*KSSAALGVRSV
Trigger: CACTGACCTCACTCCTAGTGCTGCTGACGACTTCCAACAACCCTGATGTGATGATCCCTGCGTATACTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS CAA 72 bp AATGGAGACTGGTATTGGGGCTTCAGCGGGCGCTCTTaGGCCAAACCTTTGTCAACCTCATCGAAGAGTTTC +
Preference number: 6 (lower is better)
Translates to: NGDWYWGFSGRS*AKPLSTSSKSF
Trigger: GAAACTCTTCGATGAGGTTGACAAAGGTTTGGCCAAAGAGCGCCCGCTGAAGCCCCAATACCAGTCTCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS GCA 72 bp AATACCAGCGGTAAAGCCACAATGAACCAGCATCCATaGGGTGGTAGATGGAGCGGTACTTTATGGCGTCTT +
Preference number: 6 (lower is better)
Translates to: NTSGKATMNQHP*GGRWSGTLWRL
Trigger: AAGACGCCATAAAGTACCGCTCCATCTACCACCGCATGGATGCTGGTTCATTGTGGCTTTACCGCTGGTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS CCA 72 bp CTCATCGAAGAGTTTCTGGAACTCATCAGCCAGCATTaGGCGGCCTTCATAGGACTGCACCTTCTGCATAAT +
Preference number: 6 (lower is better)
Translates to: LIEEFLELISQH*AAFIGLHLLHN
Trigger: ATTATGCAGAAGGTGCAGTCCTATGAAGGCCGCCCAATGCTGGCTGATGAGTTCCAGAAACTCTTCGATGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS CAA 72 bp GATCAGGATCAGGAAAATGATGAAGCCCAGCACACGTaGGCAGACGTTCGAGTAATACCAGCGGTAAAGCCA +
Preference number: 6 (lower is better)
Translates to: DQDQENDEAQHT*ADVRVIPAVKP
Trigger: TGGCTTTACCGCTGGTATTACTCGAACGTCTGCCAACGTGTGCTGGGCTTCATCATTTTCCTGATCCTGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
ENSMUST00000209156.2
CDS TCA 72 bp GTGAAGACTATGAAGAAGAGAGCAAAGGCCCGGTTCTaGGTATACGCAGGGATCATCACATCAGGGTTGTTG +
Preference number: 6 (lower is better)
Translates to: VKTMKKRAKARF*VYAGIITSGLL
Trigger: CAACAACCCTGATGTGATGATCCCTGCGTATACTCAGAACCGGGCCTTTGCTCTCTTCTTCATAGTCTTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2
CDS TCA 72 bp GAGATTTCATTAGGTAGCCACGGAACTGATTATAGATaGTGGCTGTCAGCAGGTTCATCAGAAACAAGCTTC +
Preference number: 6 (lower is better)
Translates to: EISLGSHGTDYR*WLSAGSSETSF
Trigger: GAAGCTTGTTTCTGATGAACCTGCTGACAGCCATCATCTATAATCAGTTCCGTGGCTACCTAATGAAATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000058022.6
ENSMUST00000208148.2
ENSMUST00000208328.2
ENSMUST00000208841.2
ENSMUST00000209047.2