RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TPCN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032741

Ensembl transcript IDs: ENSMUST00000046426.10

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTTGGTGTGTGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTaGGGGCCCTGTCTTGCTCAGGCACCTGGCTGGTATGTGCTAGAC +
Preference number: 1 (lower is better)
Translates to: LGVCSKVTLWGYSLA*GPCLAQAPGWYVLD
Trigger: GTCTAGCACATACCAGCCAGGTGCCTGAGCAAGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACACCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 90 bp GCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTGCTCAAAGGTaGCTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCTGTCTTGCTC +
Preference number: 1 (lower is better)
Translates to: AWLASLRVSLVCAQR*LCGATVWPEGPVLL
Trigger: GAGCAAGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 90 bp TGGGGGTGGGGGAGTTGTGGTAGGGTTCCAGCAACAAGAAAGGACTaGGAGCCTGAGAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACC +
Preference number: 1 (lower is better)
Translates to: WGWGSCGRVPATRKD*EPERVSSSVSLKGT
Trigger: GGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTCTCAGGCTCCCAGTCCTTTCTTGTTGCTGGAACCCTACCACAACTCCCCCACCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 90 bp GGAGGCCAAGAGCTCTTTGAAGTGGAAGGGACTTGGCCAGTCTCCTaGCTCTCTGTGGAAACCAGAGGTTTTTCCTGGGGGATAGTGTAT +
Preference number: 1 (lower is better)
Translates to: GGQELFEVEGTWPVS*LSVETRGFSWGIVY
Trigger: ATACACTATCCCCCAGGAAAAACCTCTGGTTTCCACAGAGAGTCAGGAGACTGGCCAAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 90 bp CAGCCTAAGCTGGTTATTTCTGGAGCTCAGGAAGACAGAGCGAGGTaGCTGGAACGGACCCTGGCTATAGTCTCTTTTCTGTCTCTGTGT +
Preference number: 1 (lower is better)
Translates to: QPKLVISGAQEDRAR*LERTLAIVSFLSLC
Trigger: ACACAGAGACAGAAAAGAGACTATAGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTCCTGAGCTCCAGAAATAACCAGCTTAGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR TCA 90 bp CAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCATCCGCTTTCCAGCTTaGCCCCTGGTTCTGCGGCTG +
Preference number: 2 (lower is better)
Translates to: QSALSPLGRSSVVVPTECIRFPA*PLVLRL
Trigger: CAGCCGCAGAACCAGGGGTCAAGCTGGAAAGCGGAT...GCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp GGGCCGGACACTGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTTGTGGGGCTACAGTTTaGCCTGAGGGCCCTGTCTTG +
Preference number: 2 (lower is better)
Translates to: GPDTVPTECPIPTREKQRCGATV*PEGPVL
Trigger: CAAGACAGGGCCCTCAGGCCAAACTGTAGCCCCACA...ACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACAGTGTCCGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp CAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCTCTTGCTCAGGCACCTaGCTGGTATGTGCTAGACCC +
Preference number: 2 (lower is better)
Translates to: QSALSPLGRSSVVVPTECSCSGT*LVCARP
Trigger: GGGTCTAGCACATACCAGCCAGGTGCCTGAGCAAGA...GCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR GCA 90 bp TGTGTGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCTGTCTCTTGACCCCTGGTTCTaGGGCTGGGAGAACAGGAGG +
Preference number: 2 (lower is better)
Translates to: CVLKGDSVGLQFGLRALSLDPWF*GWENRR
Trigger: CCTCCTGTTCTCCCAGCCGCAGAACCAGGGGTCAAG...AGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCAAGGCCAGGTTAGCCTaGAGGGAGTGCGCAGGGGTG +
Preference number: 2 (lower is better)
Translates to: SSHSAEWREGASSLDRDPKARLA*RECAGV
Trigger: CACCCCTGCGCACTCCCTCCAGGCTAACCTGGCCTT...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR TCA 90 bp GCCACTAGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGACAAGTCACCTGACCTaGCTCGCCACCCCTACCCAC +
Preference number: 2 (lower is better)
Translates to: ATSSHSAEWREGASSLDRTSHLT*LATPTH
Trigger: GTGGGTAGGGGTGGCGAGTCAGGTCAGGTGACTTGT...CCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACTAGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGAATTCCCAGGGCCTCTaGTTGGCTTTCTCCTGCATG +
Preference number: 2 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRNSQGL*LAFSCM
Trigger: CATGCAGGAGAAAGCCAACCAGAGGCCCTGGGAATT...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp GGGCCGGACACTGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTACCAGAGGTTTTTCCTaGGGGATAGTGTATGTATTG +
Preference number: 2 (lower is better)
Translates to: GPDTVPTECPIPTREKQRTRGFS*GIVYVL
Trigger: CAATACATACACTATCCCCCAGGAAAAACCTCTGGT...ACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACAGTGTCCGGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp CGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAATCTCCTGACTCTCTGTaGAAACCAGAGGTTTTTCCT +
Preference number: 2 (lower is better)
Translates to: REKQRGGSHRVPYPHSGESPDSL*KPEVFP
Trigger: AGGAAAAACCTCTGGTTTCCACAGAGAGTCAGGAGA...TTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR TCA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCAGGCCAAGAGCTCTTTaGAGTGGAAGGGACTTGGCC +
Preference number: 2 (lower is better)
Translates to: SSHSAEWREGASSLDRDPRPRAL*SGRDLA
Trigger: GGCCAAGTCCCTTCCACTTCAAAGAGCTCTTGGCCT...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp GAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACCTTCTAACACTTTTGTCATTGGAGCTCCGCCAGGCCTaGGCCTCCAGCCTAAGCTGG +
Preference number: 2 (lower is better)
Translates to: ESKLFCLPQGNLLTLLSLELRQA*ASSLSW
Trigger: CCAGCTTAGGCTGGAGGCCCAGGCCTGGCGGAGCTC...CAATGACAAAAGTGTTAGAAGGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp CGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTACTGCTTCTCAGGGTTaGGAACTGGAGTCCAAGTGG +
Preference number: 2 (lower is better)
Translates to: RHSLFPAWLASLRVSLVCTASQG*ELESKW
Trigger: CCACTTGGACTCCAGTTCCCAACCCTGAGAAGCAGT...ACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CAA 90 bp TTCTCAGGGTTGGGAACTGGAGTCCAAGTGGAGGCCAAGAGCTCTTaGAAGTGGAAGGGACTTGGCCAGTCTCCTGACTCTCTGTGGAAA +
Preference number: 2 (lower is better)
Translates to: FSGLGTGVQVEAKSS*KWKGLGQSPDSLWK
Trigger: TTTCCACAGAGAGTCAGGAGACTGGCCAAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTCCACTTGGACTCCAGTTCCCAACCCTGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR TCA 90 bp GGACTTGGCCAGTCTCCTGACTCTCTGTGGAAACCAGAGGTTTTTCCTGGGGGATACCCACCTAGCTTATaGGAATCTTGGAGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: GLGQSPDSLWKPEVFPGGYPPSL*ESWRRQ
Trigger: CTGCCTCCTCCAAGATTCTCATAAGCTAGGTGGGTA...TCCCCCAGGAAAAACCTCTGGTTTCCACAGAGAGTCAGGAGACTGGCCAAGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp GCCACTAGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGCAACAAGAAAGGACTaGGAGCCTGAGAGAGTAAGC +
Preference number: 2 (lower is better)
Translates to: ATSSHSAEWREGASSLDRATRKD*EPERVS
Trigger: GCTTACTCTCTCAGGCTCCCAGTCCTTTCTTGTTGC...CCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACTAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCTTTAGTACCTCTACATaGGGCCCAAGACCAGTCCCT +
Preference number: 2 (lower is better)
Translates to: SSHSAEWREGASSLDRDPFSTST*GPRPVP
Trigger: AGGGACTGGTCTTGGGCCCCATGTAGAGGTACTAAA...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR TCA 90 bp TTGGGAACTGGAGTCCAAGTGGAGGCCAAGAGCTCTTTGAAGTGGAAGGGACTTAAAGGACTGGGAGCCTaGGAGAGTAAGCTCTTCTGT +
Preference number: 2 (lower is better)
Translates to: LGTGVQVEAKSSLKWKGLKGLGA*ESKLFC
Trigger: ACAGAAGAGCTTACTCTCTCAGGCTCCCAGTCCTTT...AAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTCCACTTGGACTCCAGTTCCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp GAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACCTTCTAACACTTTTGTCATTGGAAGACAGAGCGAGGTaGCTGGAACGGACCCTGGCT +
Preference number: 2 (lower is better)
Translates to: ESKLFCLPQGNLLTLLSLEDRAR*LERTLA
Trigger: AGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTC...CAATGACAAAAGTGTTAGAAGGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp GTGGCTCTTAACCCATACAAAATGATTGTCTGCACGGTGTGGAGTAAGGCTGGGGCCTCCAGCCTAAGCTaGTTATTTCTGGAGCTCAGG +
Preference number: 2 (lower is better)
Translates to: VALNPYKMIVCTVWSKAGASSLS*LFLELR
Trigger: CCTGAGCTCCAGAAATAACCAGCTTAGGCTGGAGGC...CCCAGCCTTACTCCACACCGTGCAGACAATCATTTTGTATGGGTTAAGAGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CCA 90 bp GTGGCTCTTAACCCATACAAAATGATTGTCTGCACGGTGTGGAGTAAGGCTGGGAGTCTGTTCCCTGCCTaGCTAGCAAGTTTGAGGGTC +
Preference number: 2 (lower is better)
Translates to: VALNPYKMIVCTVWSKAGSLFPA*LASLRV
Trigger: GACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACT...CCCAGCCTTACTCCACACCGTGCAGACAATCATTTTGTATGGGTTAAGAGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR TCA 90 bp GTGGCTCTTAACCCATACAAAATGATTGTCTGCACGGTGTGGAGTAAGGCTGGGAACCGGCTATGGAAATaGAACTGCTTCTCAGGGTTG +
Preference number: 2 (lower is better)
Translates to: VALNPYKMIVCTVWSKAGNRLWK*NCFSGL
Trigger: CAACCCTGAGAAGCAGTTTCATTTCCATAGCCGGTT...CCCAGCCTTACTCCACACCGTGCAGACAATCATTTTGTATGGGTTAAGAGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR GCA 90 bp GCCACTAGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGATACTATGGTGTTATTaGATAGAAGAGGCTGGCTTG +
Preference number: 2 (lower is better)
Translates to: ATSSHSAEWREGASSLDRILWCY*IEEAGL
Trigger: CAAGCCAGCCTCTTCTATGCAATAACACCATAGTAT...CCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACTAGTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR GCA 72 bp AGCGAGAGGGAGGGGCCGGACACTGTTCCCACAGAGTaGCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGT +
Preference number: 3 (lower is better)
Translates to: SEREGPDTVPTE*PIPTREKQRGG
Trigger: ACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACAGTGTCCGGCCCCTCCCTCTCGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR GCA 72 bp AAGTCAAATTCCCAGGGCCTCTGGTTGGCTTTCTCCTaGATGGAGGGATCCTGCCGGGGGTGGGGGTGGGGG +
Preference number: 3 (lower is better)
Translates to: KSNSQGLWLAFS*MEGSCRGWGWG
Trigger: CCCCCACCCCCACCCCCGGCAGGATCCCTCCATGCAGGAGAAAGCCAACCAGAGGCCCTGGGAATTTGACTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR GCA 72 bp CCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTaGCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGT +
Preference number: 3 (lower is better)
Translates to: PLGRSSVVVPTE*PIPTREKQRGG
Trigger: ACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp AGGCAACTTCGGGCCCTGCCCACCTTCAGCCCCTTGTaGACAACACAGCAGGGCTCCATCGCTCTGCCACCA +
Preference number: 3 (lower is better)
Translates to: RQLRALPTFSPL*TTQQGSIALPP
Trigger: TGGTGGCAGAGCGATGGAGCCCTGCTGTGTTGTCCACAAGGGGCTGAAGGTGGGCAGGGCCCGAAGTTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp CACAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTaGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGG +
Preference number: 3 (lower is better)
Translates to: HRVPYPHSGEAA*WFPQSALSPLG
Trigger: CCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp TGCCTGCCCACTCCAACTCCCAAGCAACAGCAGGTTTaGAAGGCCAGGTTAGCCTGGAGGGAGTGCGCAGGG +
Preference number: 3 (lower is better)
Translates to: CLPTPTPKQQQV*KARLAWRECAG
Trigger: CCCTGCGCACTCCCTCCAGGCTAACCTGGCCTTCCAAACCTGCTGTTGCTTGGGAGTTGGAGTGGGCAGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp AGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTaGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGA +
Preference number: 3 (lower is better)
Translates to: RVPYPHSGEAAW*FPQSALSPLGR
Trigger: TCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp CGAGAGCTCCGCCAGGCCTGGGCCTCCAGCCTAAGCTaGTTATTTCTGGAGCTCAGGAAGACAGAGCGAGGT +
Preference number: 3 (lower is better)
Translates to: RELRQAWASSLS*LFLELRKTERG
Trigger: ACCTCGCTCTGTCTTCCTGAGCTCCAGAAATAACCAGCTTAGGCTGGAGGCCCAGGCCTGGCGGAGCTCTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 72 bp CAGCGTGGTGGTTCCGTAGCTGCCCCTGCTAGGCTGTaGCACGGAGCCACTAGTTCTCACTCTGCTGAATGG +
Preference number: 3 (lower is better)
Translates to: QRGGSVAAPARL*HGATSSHSAEW
Trigger: CCATTCAGCAGAGTGAGAACTAGTGGCTCCGTGTCACAGCCTAGCAGGGGCAGCTACGGAACCACCACGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CAA 90 bp GCCACTAGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGCCTGAGGGCCCTGTCTaGCTCAGGCACCTGGCTGGT +
Preference number: 3 (lower is better)
Translates to: ATSSHSAEWREGASSLDRPEGPV*LRHLAG
Trigger: ACCAGCCAGGTGCCTGAGCAAGACAGGGCCCTCAGG...CCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACTAGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CAA 90 bp TGTGTGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCTGTCTACACAGACACCTGTGTaGGCTGGGGTTCAGGTAGGG +
Preference number: 3 (lower is better)
Translates to: CVLKGDSVGLQFGLRALSTQTPV*AGVQVG
Trigger: CCCTACCTGAACCCCAGCCAACACAGGTGTCTGTGT...AGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 72 bp TGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTaGGGGCCCTGTCTTGCTCAGGCACCTGGCTGGTAT +
Preference number: 3 (lower is better)
Translates to: CSKVTLWGYSLA*GPCLAQAPGWY
Trigger: ATACCAGCCAGGTGCCTGAGCAAGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR GCA 72 bp CTCAGCTTACAGCCCTGGGCGACACAGTCTGTTCCCTaGCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTG +
Preference number: 3 (lower is better)
Translates to: LSLQPWATQSVP*LASKFEGQLGV
Trigger: CACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp CAGTTTGGCCTGAGGGCCCTGTCTTGCTCAGGCACCTaGCTGGTATGTGCTAGACCCAGGGGTTTTAGTACC +
Preference number: 3 (lower is better)
Translates to: QFGLRALSCSGT*LVCARPRGFST
Trigger: GGTACTAAAACCCCTGGGTCTAGCACATACCAGCCAGGTGCCTGAGCAAGACAGGGCCCTCAGGCCAAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTaGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTGCT +
Preference number: 3 (lower is better)
Translates to: AYSPGRHSLFPA*LASLRVSLVCA
Trigger: AGCACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 72 bp GCAAGTTTGAGGGTCAGCTTGGTGTGTGCTCAAAGGTaGCTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCT +
Preference number: 3 (lower is better)
Translates to: ASLRVSLVCAQR*LCGATVWPEGP
Trigger: AGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACACCAAGCTGACCCTCAAACTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CAA 90 bp CGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTGAGGCCAAGAGCTCTTaGAAGTGGAAGGGACTTGGC +
Preference number: 3 (lower is better)
Translates to: RHSLFPAWLASLRVSLVCEAKSS*KWKGLG
Trigger: GCCAAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTC...ACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 72 bp GGGGCTGCCTTCAGCACCAGTTCAAATGAACTCCCCTaGGCAAGTCAAATTCCCAGGGCCTCTGGTTGGCTT +
Preference number: 3 (lower is better)
Translates to: GAAFSTSSNELP*ASQIPRASGWL
Trigger: AAGCCAACCAGAGGCCCTGGGAATTTGACTTGCTCAGGGGAGTTCATTTGAACTGGTGCTGAAGGCAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 72 bp TGGGAACTGGAGTCCAAGTGGAGGCCAAGAGCTCTTTaGAGTGGAAGGGACTTGGCCAGTCTCCTGACTCTC +
Preference number: 3 (lower is better)
Translates to: WELESKWRPRAL*SGRDLASLLTL
Trigger: GAGAGTCAGGAGACTGGCCAAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTCCACTTGGACTCCAGTTCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR GCA 72 bp TGCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTaGTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCC +
Preference number: 3 (lower is better)
Translates to: CLASKFEGQLGV*SKVTLWGYSLA
Trigger: GGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp ACTGGAGTCCAAGTGGAGGCCAAGAGCTCTTTGAAGTaGAAGGGACTTGGCCAGTCTCCTGACTCTCTGTGG +
Preference number: 3 (lower is better)
Translates to: TGVQVEAKSSLK*KGLGQSPDSLW
Trigger: CCACAGAGAGTCAGGAGACTGGCCAAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTCCACTTGGACTCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CAA 90 bp CTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAATACTATGGTGTTATaGCATAGAAGAGGCTGGCTT +
Preference number: 3 (lower is better)
Translates to: LGRSSVVVPTECPIPTRENTMVL*HRRGWL
Trigger: AAGCCAGCCTCTTCTATGCAATAACACCATAGTATT...CTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CAA 90 bp TGTGTGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCTGTCTTATTTAAGGGGCTTCTaGAGCAGAGGGCTTCCAGAG +
Preference number: 3 (lower is better)
Translates to: CVLKGDSVGLQFGLRALSYLRGF*SRGLPE
Trigger: CTCTGGAAGCCCTCTGCTCAAGAAGCCCCTTAAATA...AGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CAA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCCAAGCAACAGCAGGTTaGGAAGGCCAGGTTAGCCTG +
Preference number: 3 (lower is better)
Translates to: SSHSAEWREGASSLDRDPQATAG*EGQVSL
Trigger: CAGGCTAACCTGGCCTTCCAAACCTGCTGTTGCTTG...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 72 bp CCTGACCTGACTCGCCACCCCTACCCACCTAGCTTATaGGAATCTTGGAGGAGGCAGTGTGAAAGTGTGGTT +
Preference number: 3 (lower is better)
Translates to: PDLTRHPYPPSL*ESWRRQCESVV
Trigger: AACCACACTTTCACACTGCCTCCTCCAAGATTCTCATAAGCTAGGTGGGTAGGGGTGGCGAGTCAGGTCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 72 bp GAGCTCTTTGAAGTGGAAGGGACTTGGCCAGTCTCCTaGCTCTCTGTGGAAACCAGAGGTTTTTCCTGGGGG +
Preference number: 3 (lower is better)
Translates to: ELFEVEGTWPVS*LSVETRGFSWG
Trigger: CCCCCAGGAAAAACCTCTGGTTTCCACAGAGAGTCAGGAGACTGGCCAAGTCCCTTCCACTTCAAAGAGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp GGGAGTTGTGGTAGGGTTCCAGCAACAAGAAAGGACTaGGAGCCTGAGAGAGTAAGCTCTTCTGTCTCCCTC +
Preference number: 3 (lower is better)
Translates to: GSCGRVPATRKD*EPERVSSSVSL
Trigger: GAGGGAGACAGAAGAGCTTACTCTCTCAGGCTCCCAGTCCTTTCTTGTTGCTGGAACCCTACCACAACTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp AGCAGGGCTCCATCGCTCTGCCACCATATACTATGGTaGCCTCAAAAGAACTCCCACAAGTCACCTGACCTG +
Preference number: 3 (lower is better)
Translates to: SRAPSLCHHILW*PQKNSHKSPDL
Trigger: CAGGTCAGGTGACTTGTGGGAGTTCTTTTGAGGCCACCATAGTATATGGTGGCAGAGCGATGGAGCCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR TCA 72 bp AACCTTCCGACGACGTGGCTCTTAACCCATACAAAATaGTTGTCTGCACGGTGTGGAGTAAGGCTGGGGTGG +
Preference number: 3 (lower is better)
Translates to: NLPTTWLLTHTK*LSARCGVRLGW
Trigger: CCACCCCAGCCTTACTCCACACCGTGCAGACAATCATTTTGTATGGGTTAAGAGCCACGTCGTCGGAAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp CTGGTTATTTCTGGAGCTCAGGAAGACAGAGCGAGGTaGCTGGAACGGACCCTGGCTATAGTCTCTTTTCTG +
Preference number: 3 (lower is better)
Translates to: LVISGAQEDRAR*LERTLAIVSFL
Trigger: CAGAAAAGAGACTATAGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTCCTGAGCTCCAGAAATAACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR GCA 72 bp CCTCTTTATAGGCCTCCCCTCTTTCTGCTTCCAAAATaGCCCTCACACACAAAGAAGCTAAGGCAACCGGCT +
Preference number: 3 (lower is better)
Translates to: PLYRPPLFLLPK*PSHTKKLRQPA
Trigger: AGCCGGTTGCCTTAGCTTCTTTGTGTGTGAGGGGCATTTTGGAAGCAGAAAGAGGGGAGGCCTATAAAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR-3UTR CAA 90 bp GGACTTGGCCAGTCTCCTGACTCTCTGTGGAAACCAGAGGTTTTTCCTGGGGGATTCTTCCTAGTGGTTTaGATCCTCATACCAGACACA +
Preference number: 3 (lower is better)
Translates to: GLGQSPDSLWKPEVFPGGFFLVV*ILIPDT
Trigger: TGTGTCTGGTATGAGGATCAAAACCACTAGGAAGAA...TCCCCCAGGAAAAACCTCTGGTTTCCACAGAGAGTCAGGAGACTGGCCAAGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CCA 72 bp GCTATGGAAATGAAACTGCTTCTCAGGGTTGGGAACTaGAGTCCAAGTGGAGGCCAAGAGCTCTTTGAAGTG +
Preference number: 3 (lower is better)
Translates to: AMEMKLLLRVGN*SPSGGQELFEV
Trigger: CACTTCAAAGAGCTCTTGGCCTCCACTTGGACTCCAGTTCCCAACCCTGAGAAGCAGTTTCATTTCCATAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp CGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAACGGGTCACCCGCACGTaGGACGTCTGCCGAACCAGC +
Preference number: 4 (lower is better)
Translates to: REKQRGGSHRVPYPHSGERVTRT*DVCRTS
Trigger: GCTGGTTCGGCAGACGTCCCACGTGCGGGTGACCCG...TTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GTTTTCCATGGTAGGACGAGAGCTCCGCCAGGCCTGGGCCTCCAGCCTAAGCTGACAGTCTGGGAGCGCTaGCGACTGCCAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: VFHGRTRAPPGLGLQPKLTVWER*RLPGGC
Trigger: GCAGCCCCCTGGCAGTCGCCAGCGCTCCCAGACTGT...CAGCTTAGGCTGGAGGCCCAGGCCTGGCGGAGCTCTCGTCCTACCATGGAAAAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCGGGCACGCTGCCCCTaGGCTTCTGCTGCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: QSALSPLGRSSVVVPTECRARCP*ASAAPV
Trigger: AACAGGAGCAGCAGAAGCTCAGGGGCAGCGTGCCCG...GCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CAA 72 bp GCTAGGCAACTTCGGGCCCTGCCCACCTTCAGCCCCTaGTGGACAACACAGCAGGGCTCCATCGCTCTGCCA +
Preference number: 4 (lower is better)
Translates to: ARQLRALPTFSP*WTTQQGSIALP
Trigger: TGGCAGAGCGATGGAGCCCTGCTGTGTTGTCCACAAGGGGCTGAAGGTGGGCAGGGCCCGAAGTTGCCTAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp CAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCTACAGGCGGCTCCAGTaGGACGTCTGCGAGGTGACG +
Preference number: 4 (lower is better)
Translates to: QSALSPLGRSSVVVPTECYRRLQ*DVCEVT
Trigger: CGTCACCTCGCAGACGTCCCACTGGAGCCGCCTGTA...GCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAAGCAGGAGCAGGGCCGTaGGCAGCTCCATCATGTAGA +
Preference number: 4 (lower is better)
Translates to: REKQRGGSHRVPYPHSGEAGAGP*AAPSCR
Trigger: TCTACATGATGGAGCTGCTCACGGCCCTGCTCCTGC...TTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GTTTTCCATGGTAGGACGAGAGCTCCGCCAGGCCTGGGCCTCCAGCCTAAGCTGCTCCAGTGGGACGTCTaGGAGGTGACGCCTTCCATG +
Preference number: 4 (lower is better)
Translates to: VFHGRTRAPPGLGLQPKLLQWDV*EVTPSM
Trigger: CATGGAAGGCGTCACCTCGCAGACGTCCCACTGGAG...CAGCTTAGGCTGGAGGCCCAGGCCTGGCGGAGCTCTCGTCCTACCATGGAAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp CTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGCCGAGTCCTGGCTCTTaGGGCTGTAGTTCATGCGGA +
Preference number: 4 (lower is better)
Translates to: LGRSSVVVPTECPIPTREPSPGS*GCSSCG
Trigger: TCCGCATGAACTACAGCCGCAAGAGCCAGGACTCGG...CTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp CAAGCAACAGCAGGTTTGGAAGGCCAGGTTAGCCTGGAGGGAGTGCGCAGGGGTCTGCCCCTGAGCTTCTaGTGCTCCTGTTCCCGGGCA +
Preference number: 4 (lower is better)
Translates to: QATAGLEGQVSLEGVRRGLPLSF*CSCSRA
Trigger: TGCCCGGGAACAGGAGCAGCAGAAGCTCAGGGGCAG...ACCCCTGCGCACTCCCTCCAGGCTAACCTGGCCTTCCAAACCTGCTGTTGCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GTTTTCCATGGTAGGACGAGAGCTCCGCCAGGCCTGGGCCTCCAGCCTAAGCTGCTGGGCAGCTGCTCTTaGCCCAGGCTGTTCGAAGGA +
Preference number: 4 (lower is better)
Translates to: VFHGRTRAPPGLGLQPKLLGSCS*PRLFEG
Trigger: TCCTTCGAACAGCCTGGGCCAAGAGCAGCTGCCCAG...CAGCTTAGGCTGGAGGCCCAGGCCTGGCGGAGCTCTCGTCCTACCATGGAAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGACTGCCTGTAGGAGATaGCAGCCGGCCTCCGTTGGC +
Preference number: 4 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRTACRR*QPASVG
Trigger: GCCAACGGAGGCCGGCTGGCATCTCCTACAGGCAGT...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GTGCTAGGCAACTTCGGGCCCTGCCCACCTTCAGCCCCTTGTGGACAACACAGCTGCCCCCATTTTTGCTaGGCAGCTGCTCTTGGCCCA +
Preference number: 4 (lower is better)
Translates to: VLGNFGPCPPSAPCGQHSCPHFC*AAALGP
Trigger: TGGGCCAAGAGCAGCTGCCCAGCAAAAATGGGGGCA...GCTGTGTTGTCCACAAGGGGCTGAAGGTGGGCAGGGCCCGAAGTTGCCTAGCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGCAAATACCACCACCATaGGGGCAAAGAGTTCCAGCG +
Preference number: 4 (lower is better)
Translates to: LGRSSVVVPTECPIPTREQIPPP*GQRVPA
Trigger: CGCTGGAACTCTTTGCCCTCATGGTGGTGGTATTTG...CTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp CAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCTGTGGATGCTGTGGCTaGCCCCATTTTTGCTGGGCA +
Preference number: 4 (lower is better)
Translates to: QSALSPLGRSSVVVPTECCGCCG*PHFCWA
Trigger: TGCCCAGCAAAAATGGGGGCAGCCACAGCATCCACA...GCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp CAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTGGGAGTTGTGGATaGTGTGGCTGCCCCCATTTT +
Preference number: 4 (lower is better)
Translates to: QSALSPLGRSSVVVPTECPGSCG*CGCPHF
Trigger: AAAATGGGGGCAGCCACAGCATCCACAACTCCCAGG...GCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGTCCTGTTCCCGGGCATaGTCCTCGTACCACTCCTGG +
Preference number: 4 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRSCSRA*SSYHSW
Trigger: CCAGGAGTGGTACGAGGAGCATGCCCGGGAACAGGA...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp TTCTGGAGCTCAGGAAGACAGAGCGAGGTGGCTGGAACGGACCCTGGCTATAGTCCCCTGAGCTTCTGCTaGTCCTGTTCCCGGGCATGC +
Preference number: 4 (lower is better)
Translates to: FWSSGRQSEVAGTDPGYSPLSFC*SCSRAC
Trigger: GCATGCCCGGGAACAGGAGCAGCAGAAGCTCAGGGG...ACTATAGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTCCTGAGCTCCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGTGCCGGACGAACGTGTaGAAGCCCAGCCACCGCAAT +
Preference number: 4 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRCRTNV*KPSHRN
Trigger: ATTGCGGTGGCTGGGCTTCCACACGTTCGTCCGGCA...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CAAGCAACAGCAGGTTTGGAAGGCCAGGTTAGCCTGGAGGGAGTGCGCAGGGGTAATAACCTCAGCAGCTaGAGGGGACGCAGGACCACA +
Preference number: 4 (lower is better)
Translates to: QATAGLEGQVSLEGVRRGNNLSS*RGRRTT
Trigger: TGTGGTCCTGCGTCCCCTTCAGCTGCTGAGGTTATT...ACCCCTGCGCACTCCCTCCAGGCTAACCTGGCCTTCCAAACCTGCTGTTGCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp CAAGCAACAGCAGGTTTGGAAGGCCAGGTTAGCCTGGAGGGAGTGCGCAGGGGTAGTCCACCAGGAAAATaGAGCGTAGTGCCCGGGTCA +
Preference number: 4 (lower is better)
Translates to: QATAGLEGQVSLEGVRRGSPPGK*SVVPGS
Trigger: TGACCCGGGCACTACGCTGCATTTTCCTGGTGGACT...ACCCCTGCGCACTCCCTCCAGGCTAACCTGGCCTTCCAAACCTGCTGTTGCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GGGGGAGTTGTGGTAGGGTTCCAGCAACAAGAAAGGACTGGGAGCCTGAGAGAGCCACTGTGCTGGTGTTaGAGCAGTTGGGGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: GGVVVGFQQQERTGSLREPLCWC*SSWGSA
Trigger: GGCTGACCCCCAACTGCTGCAACACCAGCACAGTGG...CTCTCTCAGGCTCCCAGTCCTTTCTTGTTGCTGGAACCCTACCACAACTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGCGTAGGCATGCTGGATaGCGGTCCGTTTGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRRRHAG*RSVCAA
Trigger: TGCTGCACAAACGGACCGCCATCCAGCATGCCTACG...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp CAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCGCAGCAGCTCAAACATaGTGTCCAACACGTTGCGGT +
Preference number: 4 (lower is better)
Translates to: QSALSPLGRSSVVVPTECAAAQT*CPTRCG
Trigger: ACCGCAACGTGTTGGACACCATGTTTGAGCTGCTGC...GCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GTGCTAGGCAACTTCGGGCCCTGCCCACCTTCAGCCCCTTGTGGACAACACAGCTCCTCGTACCACTCCTaGATCTCCTCCTGGTACATC +
Preference number: 4 (lower is better)
Translates to: VLGNFGPCPPSAPCGQHSSSYHS*ISSWYI
Trigger: GATGTACCAGGAGGAGATCCAGGAGTGGTACGAGGA...GCTGTGTTGTCCACAAGGGGCTGAAGGTGGGCAGGGCCCGAAGTTGCCTAGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp GTTTTCCATGGTAGGACGAGAGCTCCGCCAGGCCTGGGCCTCCAGCCTAAGCTGCATCCTTGGGGTGGGTaGAGAACTTGTCGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: VFHGRTRAPPGLGLQPKLHPWGG*RTCRCS
Trigger: AGAACAACGACAAGTTCTTCACCCACCCCAAGGATG...CAGCTTAGGCTGGAGGCCCAGGCCTGGCGGAGCTCTCGTCCTACCATGGAAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAAAGTAGGAGGGCATCATaGCATCTGGAAAGTTGGCTG +
Preference number: 4 (lower is better)
Translates to: REKQRGGSHRVPYPHSGESRRAS*HLESWL
Trigger: CAGCCAACTTTCCAGATGTCATGATGCCCTCCTACT...TTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAACCAGGGCACATGCTTTaGGGTGAAATTCCCACCTTT +
Preference number: 4 (lower is better)
Translates to: REKQRGGSHRVPYPHSGEPGHML*GEIPTF
Trigger: AAAGGTGGGAATTTCACCTCAAAGCATGTGCCCTGG...TTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGAGAGACTGGAAGATCTaGCGCAGGTTGCGCCGTACA +
Preference number: 4 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRRDWKI*RRLRRT
Trigger: TGTACGGCGCAACCTGCGGCAGATCTTCCAGTCTCT...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp TGTGTGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCTGTCTACAGGAGGATGTCCATaGAGGGTGGGAGAGACTGGA +
Preference number: 4 (lower is better)
Translates to: CVLKGDSVGLQFGLRALSTGGCP*RVGETG
Trigger: TCCAGTCTCTCCCACCCTTCATGGACATCCTCCTGT...AGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp GGGGGAGTTGTGGTAGGGTTCCAGCAACAAGAAAGGACTGGGAGCCTGAGAGAGGGAGAACGAACAGGTTaGCGATGCTGTTCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: GGVVVGFQQQERTGSLREGERTG*RCCSPG
Trigger: CCCTGGAGAACAGCATCGTCAACCTGTTCGTTCTCC...CTCTCTCAGGCTCCCAGTCCTTTCTTGTTGCTGGAACCCTACCACAACTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CAAGCAACAGCAGGTTTGGAAGGCCAGGTTAGCCTGGAGGGAGTGCGCAGGGGTGCTTTTCAATGTCGTTaGAGGTGTCGAACACCACGG +
Preference number: 4 (lower is better)
Translates to: QATAGLEGQVSLEGVRRGAFQCR*RCRTPR
Trigger: CCGTGGTGTTCGACACCTTCAACGACATTGAAAAGC...ACCCCTGCGCACTCCCTCCAGGCTAACCTGGCCTTCCAAACCTGCTGTTGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCGACGCAGGACCACAATaGAATAGAAGGGTTCCATGT +
Preference number: 4 (lower is better)
Translates to: QSALSPLGRSSVVVPTECDAGPQ*NRRVPC
Trigger: ACATGGAACCCTTCTATTTCATTGTGGTCCTGCGTC...GCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAGGTCACGAAGCTGTTaGGGATGTTGTCAAAGTTGT +
Preference number: 4 (lower is better)
Translates to: LGRSSVVVPTECPIPTRERSRSC*GCCQSC
Trigger: ACAACTTTGACAACATCCTCAACAGCTTCGTGACCT...CTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCGGCTGCCCCCATTTTTaGTGGGCAGCTGCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: SSHSAEWREGASSLDRDPGCPHF*WAAALG
Trigger: GCCAAGAGCAGCTGCCCAGCAAAAATGGGGGCAGCC...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GGGGGAGTTGTGGTAGGGTTCCAGCAACAAGAAAGGACTGGGAGCCTGAGAGAGCAGGAAGCGTTCCCTTaGACTCATCCGGGGCTTGTA +
Preference number: 4 (lower is better)
Translates to: GGVVVGFQQQERTGSLREQEAFP*THPGLV
Trigger: TACAAGCCCCGGATGAGTGCAAGGGAACGCTTCCTG...CTCTCTCAGGCTCCCAGTCCTTTCTTGTTGCTGGAACCCTACCACAACTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACCTTCTAACACTTTTGTCATTGGGGAGCGCTGGCGACTaGCAGGGGGCTGCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: ESKLFCLPQGNLLTLLSLGSAGD*QGAAGL
Trigger: CAGCCCAGCAGCCCCCTGGCAGTCGCCAGCGCTCCC...CAATGACAAAAGTGTTAGAAGGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGCTGTCTGTTTCTCTTTaGCTTCCACTGCAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRLSVSL*LPLQSS
Trigger: GCTGCTCTGCAGTGGAAGGCAAAGAGAAACAGACAG...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp TTGGGAACTGGAGTCCAAGTGGAGGCCAAGAGCTCTTTGAAGTGGAAGGGACTTAGGCGTCGGCCACTGTaGTGGTGTTGCAGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: LGTGVQVEAKSSLKWKGLRRRPL*WCCSSW
Trigger: CCAACTGCTGCAACACCAGCACAGTGGCCGACGCCT...AAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTCCACTTGGACTCCAGTTCCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp GCCACTAGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGCGTCCAAGGTCAGGATaGGCGGCACATCGTCATCTA +
Preference number: 4 (lower is better)
Translates to: ATSSHSAEWREGASSLDRRPRSG*AAHRHL
Trigger: TAGATGACGATGTGCCGCTCATCCTGACCTTGGACG...CCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACTAGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp TTCTGGAGCTCAGGAAGACAGAGCGAGGTGGCTGGAACGGACCCTGGCTATAGTCCACCACCAAGTACATaGAATACTGGAAGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: FWSSGRQSEVAGTDPGYSPPPST*NTGRPW
Trigger: CCAAGGCCTTCCAGTATTTCATGTACTTGGTGGTGG...ACTATAGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTCCTGAGCTCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCGGATCCAGACACCGTTaGCAGCCACCACCAAGTACA +
Preference number: 4 (lower is better)
Translates to: SSHSAEWREGASSLDRDPGSRHR*QPPPST
Trigger: TGTACTTGGTGGTGGCTGTCAACGGTGTCTGGATCC...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp GGGGGAGTTGTGGTAGGGTTCCAGCAACAAGAAAGGACTGGGAGCCTGAGAGAGATGGCGGTCCGTTTGTaGAGCAGCAAAGACTTGAAC +
Preference number: 4 (lower is better)
Translates to: GGVVVGFQQQERTGSLREMAVRL*SSKDLN
Trigger: GTTCAAGTCTTTGCTGCTGCACAAACGGACCGCCAT...CTCTCTCAGGCTCCCAGTCCTTTCTTGTTGCTGGAACCCTACCACAACTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp TCAGGAAGACAGAGCGAGGTGGCTGGAACGGACCCTGGCTATAGTCTCTTTTCTTGCGGCTGTAGTTCATaGGGAAGACGAAGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: SGRQSEVAGTDPGYSLFSCGCSS*GRRRPP
Trigger: TGGAGGCCTTCGTCTTCCGCATGAACTACAGCCGCA...AGAAAAGAGACTATAGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp TTGGGAACTGGAGTCCAAGTGGAGGCCAAGAGCTCTTTGAAGTGGAAGGGACTTACCAGACTGGGGACCTaGGAGTTGTGGATGCTGTGG +
Preference number: 4 (lower is better)
Translates to: LGTGVQVEAKSSLKWKGLTRLGT*ELWMLW
Trigger: CCACAGCATCCACAACTCCCAGGTCCCCAGTCTGGT...AAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTCCACTTGGACTCCAGTTCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GCCACTAGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGAAGGGTGGGAGAGACTaGAAGATCTGCCGCAGGTTG +
Preference number: 4 (lower is better)
Translates to: ATSSHSAEWREGASSLDRKGGRD*KICRRL
Trigger: CAACCTGCGGCAGATCTTCCAGTCTCTCCCACCCTT...CCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACTAGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp TTCTGGAGCTCAGGAAGACAGAGCGAGGTGGCTGGAACGGACCCTGGCTATAGTGATGTCCATGAAGGGTaGGAGAGACTGGAAGATCTG +
Preference number: 4 (lower is better)
Translates to: FWSSGRQSEVAGTDPGYSDVHEG*ERLEDL
Trigger: CAGATCTTCCAGTCTCTCCCACCCTTCATGGACATC...ACTATAGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTCCTGAGCTCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GGGGGAGTTGTGGTAGGGTTCCAGCAACAAGAAAGGACTGGGAGCCTGAGAGAGCTGGAAAGTTGGCTGTaGTCAGGAGAACGAACAGGT +
Preference number: 4 (lower is better)
Translates to: GGVVVGFQQQERTGSLRELESWL*SGERTG
Trigger: ACCTGTTCGTTCTCCTGACCACAGCCAACTTTCCAG...CTCTCTCAGGCTCCCAGTCCTTTCTTGTTGCTGGAACCCTACCACAACTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp CGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTGACTCAGGTCACTTTTaGTTCTCGATCGCCGTCCCA +
Preference number: 4 (lower is better)
Translates to: RHSLFPAWLASLRVSLVCDSGHF*FSIAVP
Trigger: TGGGACGGCGATCGAGAACCAAAAGTGACCTGAGTC...ACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp CAAGCAACAGCAGGTTTGGAAGGCCAGGTTAGCCTGGAGGGAGTGCGCAGGGGTGGTCGGAAGGATTTGTaGAGAATAAGTAGAAACCGA +
Preference number: 4 (lower is better)
Translates to: QATAGLEGQVSLEGVRRGGRKDL*RISRNR
Trigger: TCGGTTTCTACTTATTCTCCACAAATCCTTCCGACC...ACCCCTGCGCACTCCCTCCAGGCTAACCTGGCCTTCCAAACCTGCTGTTGCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCTGGAGAGGTATACAATaGAGAAGACGCAGGACCAGG +
Preference number: 4 (lower is better)
Translates to: SSHSAEWREGASSLDRDPWRGIQ*RRRRTR
Trigger: CCTGGTCCTGCGTCTTCTTCATTGTATACCTCTCCA...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp CGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTCTATGTAAAAGGTCATaGAGTACAGGCGGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: RHSLFPAWLASLRVSLVCLCKRS*STGGSS
Trigger: ACTGGAGCCGCCTGTACTTCATGACCTTTTACATAG...ACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp TTCTGGAGCTCAGGAAGACAGAGCGAGGTGGCTGGAACGGACCCTGGCTATAGTGCAGCAGCAAAGACTTaGACTTGTGCTTTTCAATGT +
Preference number: 4 (lower is better)
Translates to: FWSSGRQSEVAGTDPGYSAAAKT*TCAFQC
Trigger: ACATTGAAAAGCACAAGTTCAAGTCTTTGCTGCTGC...ACTATAGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTCCTGAGCTCCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp TTGGGAACTGGAGTCCAAGTGGAGGCCAAGAGCTCTTTGAAGTGGAAGGGACTTACTCCATGCCCACGATaGCGAAGGAATAGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: LGTGVQVEAKSSLKWKGLTPCPR*RRNSRR
Trigger: CCTTCTACTATTCCTTCGCCATCGTGGGCATGGAGT...AAGTCCCTTCCACTTCAAAGAGCTCTTGGCCTCCACTTGGACTCCAGTTCCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp TGTGTGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCTGTCTTGGTCATCACCACCATaGTCACTATGTAAAAGGTCA +
Preference number: 4 (lower is better)
Translates to: CVLKGDSVGLQFGLRALSWSSPP*SLCKRS
Trigger: TGACCTTTTACATAGTGACCATGGTGGTGATGACCA...AGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
3UTR CAA 72 bp TCATCCTGCAGGGTGTGGGGTTTCTTCCTAGTGGTTTaGATCCTCATACCAGACACAGACACCTGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: SSCRVWGFFLVV*ILIPDTDTCVG
Trigger: GCCAACACAGGTGTCTGTGTCTGGTATGAGGATCAAAACCACTAGGAAGAAACCCCACACCCTGCAGGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp GGGGGAGTTGTGGTAGGGTTCCAGCAACAAGAAAGGACTGGGAGCCTGAGAGAGTGTTGTCAAAGTTGTTaGGATAGTAGTAGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: GGVVVGFQQQERTGSLRECCQSC*DSSSLP
Trigger: AGGAAGGCTACTACTATCTCAACAACTTTGACAACA...CTCTCTCAGGCTCCCAGTCCTTTCTTGTTGCTGGAACCCTACCACAACTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GTGGCTCTTAACCCATACAAAATGATTGTCTGCACGGTGTGGAGTAAGGCTGGGAGAGGCGTGTTGCTCTaGTTCAAGGCCTTGAAAGTC +
Preference number: 4 (lower is better)
Translates to: VALNPYKMIVCTVWSKAGRGVLL*FKALKV
Trigger: GACTTTCAAGGCCTTGAACCAGAGCAACACGCCTCT...CCCAGCCTTACTCCACACCGTGCAGACAATCATTTTGTATGGGTTAAGAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCTTCCTGGAGGTAGATTaGCGCCTCTTGATAATTCAT +
Preference number: 4 (lower is better)
Translates to: SSHSAEWREGASSLDRDPFLEVD*RLLIIH
Trigger: ATGAATTATCAAGAGGCGGCAATCTACCTCCAGGAA...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp GAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACCTTCTAACACTTTTGTCATTGGAGTTGTGGATGCTGTaGCTGCCCCCATTTTTGCTG +
Preference number: 4 (lower is better)
Translates to: ESKLFCLPQGNLLTLLSLELWML*LPPFLL
Trigger: CAGCAAAAATGGGGGCAGCCACAGCATCCACAACTC...CAATGACAAAAGTGTTAGAAGGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CCA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCGTCCCAGAAACACCATaGAATTTTGCTGGTATTTCT +
Preference number: 4 (lower is better)
Translates to: SSHSAEWREGASSLDRDPVPETP*NFAGIS
Trigger: AGAAATACCAGCAAAATTCCATGGTGTTTCTGGGAC...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR TCA 90 bp GAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACCTTCTAACACTTTTGTCATTGGGCCAGCCACCTTCATaGACAGTTCAACTCCATAGA +
Preference number: 4 (lower is better)
Translates to: ESKLFCLPQGNLLTLLSLGQPPS*TVQLHR
Trigger: TCTATGGAGTTGAACTGTTCATGAAGGTGGCTGGCC...CAATGACAAAAGTGTTAGAAGGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR GCA 90 bp CGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTAAAGACTTGAACTTGTaGTTTTCAATGTCGTTGAAG +
Preference number: 4 (lower is better)
Translates to: RHSLFPAWLASLRVSLVCKDLNL*FSMSLK
Trigger: CTTCAACGACATTGAAAAGCACAAGTTCAAGTCTTT...ACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 90 bp GGGGGCTGCTGGGCTGCAGGGCCGGGCACGCTGCCCCTGAGCTTCTaGTGCTCCTGTTCCCGGGCATGCTCCTCGTACCACTCCTGGATC +
Preference number: 5 (lower is better)
Translates to: GGCWAAGPGTLPLSF*CSCSRACSSYHSWI
Trigger: GATCCAGGAGTGGTACGAGGAGCATGCCCGGGAACAGGAGCAGCAGAAGCTCAGGGGCAGCGTGCCCGGCCCTGCAGCCCAGCAGCCCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 90 bp GGCTGCTGGGCTGCAGGGCCGGGCACGCTGCCCCTGAGCTTCTGCTaGTCCTGTTCCCGGGCATGCTCCTCGTACCACTCCTGGATCTCC +
Preference number: 5 (lower is better)
Translates to: GCWAAGPGTLPLSFC*SCSRACSSYHSWIS
Trigger: GGAGATCCAGGAGTGGTACGAGGAGCATGCCCGGGAACAGGAGCAGCAGAAGCTCAGGGGCAGCGTGCCCGGCCCTGCAGCCCAGCAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 90 bp AGGAAAATGCAGCGTAGTGCCCGGGTCACCCGCACGTGGGACGTCTaGCGAACCAGCACCACAATGGCCTCGATGAACTGCACCACGAGG +
Preference number: 5 (lower is better)
Translates to: RKMQRSARVTRTWDV*RTSTTMASMNCTTR
Trigger: CCTCGTGGTGCAGTTCATCGAGGCCATTGTGGTGCTGGTTCGGCAGACGTCCCACGTGCGGGTGACCCGGGCACTACGCTGCATTTTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 90 bp TTGTGGATGCTGTGGCTGCCCCCATTTTTGCTGGGCAGCTGCTCTTaGCCCAGGCTGTTCGAAGGAGGCAGCGGAGCACTCTCAGCCTCG +
Preference number: 5 (lower is better)
Translates to: LWMLWLPPFLLGSCS*PRLFEGGSGALSAS
Trigger: CGAGGCTGAGAGTGCTCCGCTGCCTCCTTCGAACAGCCTGGGCCAAGAGCAGCTGCCCAGCAAAAATGGGGGCAGCCACAGCATCCACAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 90 bp CAGTCCACCAGGAAAATGCAGCGTAGTGCCCGGGTCACCCGCACGTaGGACGTCTGCCGAACCAGCACCACAATGGCCTCGATGAACTGC +
Preference number: 5 (lower is better)
Translates to: QSTRKMQRSARVTRT*DVCRTSTTMASMNC
Trigger: GCAGTTCATCGAGGCCATTGTGGTGCTGGTTCGGCAGACGTCCCACGTGCGGGTGACCCGGGCACTACGCTGCATTTTCCTGGTGGACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GGGCCGGACACTGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTCTGAGCAGAGGCGTGTaGCTCTGGTTCAAGGCCTTG +
Preference number: 5 (lower is better)
Translates to: GPDTVPTECPIPTREKQRLSRGV*LWFKAL
Trigger: CAAGGCCTTGAACCAGAGCAACACGCCTCTGCTCAG...ACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACAGTGTCCGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 90 bp GGGGCTTGTAGAAGCGCATTAAGCCTTCGAACTGCCTGTAGGAGATaGCAGCCGGCCTCCGTTGGCTGGCAAGCAGGCCGTAGGCATGCT +
Preference number: 5 (lower is better)
Translates to: GACRSALSLRTACRR*QPASVGWQAGRRHA
Trigger: AGCATGCCTACGGCCTGCTTGCCAGCCAACGGAGGCCGGCTGGCATCTCCTACAGGCAGTTCGAAGGCTTAATGCGCTTCTACAAGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp TGTGTGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCTGTCTGCTGGGCAGCTGCTCTaGGCCCAGGCTGTTCGAAGG +
Preference number: 5 (lower is better)
Translates to: CVLKGDSVGLQFGLRALSAGQLL*AQAVRR
Trigger: CCTTCGAACAGCCTGGGCCAAGAGCAGCTGCCCAGC...AGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GGGCCGGACACTGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTTTGACCATGGTACGTTaGTGCCGGACGAACGTGTGG +
Preference number: 5 (lower is better)
Translates to: GPDTVPTECPIPTREKQRLTMVR*CRTNVW
Trigger: CCACACGTTCGTCCGGCACAAACGTACCATGGTCAA...ACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACAGTGTCCGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GTTTTCCATGGTAGGACGAGAGCTCCGCCAGGCCTGGGCCTCCAGCCTAAGCTGTGGATGGCGGTCCGTTaGTGCAGCAGCAAAGACTTG +
Preference number: 5 (lower is better)
Translates to: VFHGRTRAPPGLGLQPKLWMAVR*CSSKDL
Trigger: CAAGTCTTTGCTGCTGCACAAACGGACCGCCATCCA...CAGCTTAGGCTGGAGGCCCAGGCCTGGCGGAGCTCTCGTCCTACCATGGAAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 90 bp GGACGAAGAGGTAGGCCGCCAGCGCTCTGGCATCCTTGGGGTGGGTaGAGAACTTGTCGTTGTTCTGACCTTCCTGGAGGTAGATTGCCG +
Preference number: 5 (lower is better)
Translates to: GRRGRPPALWHPWGG*RTCRCSDLPGGRLP
Trigger: CGGCAATCTACCTCCAGGAAGGTCAGAACAACGACAAGTTCTTCACCCACCCCAAGGATGCCAGAGCGCTGGCGGCCTACCTCTTCGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp TCAGGAAGACAGAGCGAGGTGGCTGGAACGGACCCTGGCTATAGTCTCTTTTCTCTGGGGACCTGGGAGTaGTGGATGCTGTGGCTGCCC +
Preference number: 5 (lower is better)
Translates to: SGRQSEVAGTDPGYSLFSLGTWE*WMLWLP
Trigger: GGGCAGCCACAGCATCCACAACTCCCAGGTCCCCAG...AGAAAAGAGACTATAGCCAGGGTCCGTTCCAGCCACCTCGCTCTGTCTTCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GGGCCGGACACTGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAAGCAGCGTATGACATCTGGAAAGTaGGCTGTGGTCAGGAGAACG +
Preference number: 5 (lower is better)
Translates to: GPDTVPTECPIPTREKQRMTSGK*AVVRRT
Trigger: CGTTCTCCTGACCACAGCCAACTTTCCAGATGTCAT...ACGCTGCTTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACAGTGTCCGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp CGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAACTCTGGTTCAAGGCCTaGAAAGTCAGGAAGCGTTCC +
Preference number: 5 (lower is better)
Translates to: REKQRGGSHRVPYPHSGELWFKA*KVRKRS
Trigger: GGAACGCTTCCTGACTTTCAAGGCCTTGAACCAGAG...TTCTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCGGGGTCAGCCGCCCGTaGAAGAACTCCATGCCCACG +
Preference number: 5 (lower is better)
Translates to: SSHSAEWREGASSLDRDPGVSRP*KNSMPT
Trigger: CGTGGGCATGGAGTTCTTCAACGGGCGGCTGACCCC...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGAGACTCAGGTCACTTTaGGTTCTCGATCGCCGTCCC +
Preference number: 5 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRRLRSL*VLDRRP
Trigger: GGGACGGCGATCGAGAACCAAAAGTGACCTGAGTCT...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 90 bp CGCCGTCCCAGAAACACCATGGAATTTTGCTGGTATTTCTCCATCTaGGAGAGGGTGTCCAGCAGCCGGGTCACGTCAGAGGAGGTGCCT +
Preference number: 5 (lower is better)
Translates to: RRPRNTMEFCWYFSI*ERVSSSRVTSEEVP
Trigger: AGGCACCTCCTCTGACGTGACCCGGCTGCTGGACACCCTCTCTCAGATGGAGAAATACCAGCAAAATTCCATGGTGTTTCTGGGACGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 90 bp ATGAACTGCACCACGAGGACGGACGTCTTGACCATGGTACGTTTGTaGCGGACGAACGTGTGGAAGCCCAGCCACCGCAATTTCATGCAG +
Preference number: 5 (lower is better)
Translates to: MNCTTRTDVLTMVRL*RTNVWKPSHRNFMQ
Trigger: CTGCATGAAATTGCGGTGGCTGGGCTTCCACACGTTCGTCCGGCACAAACGTACCATGGTCAAGACGTCCGTCCTCGTGGTGCAGTTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 90 bp GGGTTCCATGTTGAGCGTCAGTGCGAGCAGTCCCAGGAAGGCGAATaGCGTGACCGAGAAATCGAACAGGTTCCATCCAGAGGACAGGTA +
Preference number: 5 (lower is better)
Translates to: GFHVERQCEQSQEGE*RDREIEQVPSRGQV
Trigger: TACCTGTCCTCTGGATGGAACCTGTTCGATTTCTCGGTCACGGCATTCGCCTTCCTGGGACTGCTCGCACTGACGCTCAACATGGAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCTGGCTGCCCCCATTTTaGCTGGGCAGCTGCTCTTGG +
Preference number: 5 (lower is better)
Translates to: SSHSAEWREGASSLDRDPWLPPF*LGSCSW
Trigger: CCAAGAGCAGCTGCCCAGCAAAAATGGGGGCAGCCA...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp CTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGGTAGATTGCCGCCTCTaGATAATTCATCTCCCAGTT +
Preference number: 5 (lower is better)
Translates to: LGRSSVVVPTECPIPTREVDCRL*IIHLPV
Trigger: AACTGGGAGATGAATTATCAAGAGGCGGCAATCTAC...CTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp CTCGGGAGAAGCAGCGTGGTGGTTCCCACAGAGTGCCCTATCCCCACTCGGGAGAAGGTCACGAAGCTGTaGAGGATGTTGTCAAAGTTG +
Preference number: 5 (lower is better)
Translates to: LGRSSVVVPTECPIPTREKVTKL*RMLSKL
Trigger: CAACTTTGACAACATCCTCAACAGCTTCGTGACCTT...CTCCCGAGTGGGGATAGGGCACTCTGTGGGAACCACCACGCTGCTTCTCCCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp CGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTAGGATCCAGACACCGTaGACAGCCACCACCAAGTAC +
Preference number: 5 (lower is better)
Translates to: RHSLFPAWLASLRVSLVCRIQTP*TATTKY
Trigger: GTACTTGGTGGTGGCTGTCAACGGTGTCTGGATCCT...ACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 90 bp AGCCCAGCCACCGCAATTTCATGCAGAGTTCAAATACCACCACCATaGGGGCAAAGAGTTCCAGCGTGGCGTGGACGTAAGTGTGCAGCT +
Preference number: 5 (lower is better)
Translates to: SPATAISCRVQIPPP*GQRVPAWRGRKCAA
Trigger: AGCTGCACACTTACGTCCACGCCACGCTGGAACTCTTTGCCCTCATGGTGGTGGTATTTGAACTCTGCATGAAATTGCGGTGGCTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 90 bp AGGACGGACGTCTTGACCATGGTACGTTTGTGCCGGACGAACGTGTaGAAGCCCAGCCACCGCAATTTCATGCAGAGTTCAAATACCACC +
Preference number: 5 (lower is better)
Translates to: RTDVLTMVRLCRTNV*KPSHRNFMQSSNTT
Trigger: GGTGGTATTTGAACTCTGCATGAAATTGCGGTGGCTGGGCTTCCACACGTTCGTCCGGCACAAACGTACCATGGTCAAGACGTCCGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GCTTACAGCCCTGGGCGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGTGCTTTTCAATGTCGTaGAAGGTGTCGAACACCACG +
Preference number: 5 (lower is better)
Translates to: AYSPGRHSLFPAWLASLRCFSMS*KVSNTT
Trigger: CGTGGTGTTCGACACCTTCAACGACATTGAAAAGCA...CCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCGCCCAGGGCTGTAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GTTTTCCATGGTAGGACGAGAGCTCCGCCAGGCCTGGGCCTCCAGCCTAAGCTGTGCAGCAGCAAAGACTaGAACTTGTGCTTTTCAATG +
Preference number: 5 (lower is better)
Translates to: VFHGRTRAPPGLGLQPKLCSSKD*NLCFSM
Trigger: CATTGAAAAGCACAAGTTCAAGTCTTTGCTGCTGCA...CAGCTTAGGCTGGAGGCCCAGGCCTGGCGGAGCTCTCGTCCTACCATGGAAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 90 bp ACGCAGGACCACAATGAAATAGAAGGGTTCCATGTTGAGCGTCAGTaGGAGCAGTCCCAGGAAGGCGAATGCCGTGACCGAGAAATCGAA +
Preference number: 5 (lower is better)
Translates to: TQDHNEIEGFHVERQ*EQSQEGECRDREIE
Trigger: TTCGATTTCTCGGTCACGGCATTCGCCTTCCTGGGACTGCTCGCACTGACGCTCAACATGGAACCCTTCTATTTCATTGTGGTCCTGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GCCACTAGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGCTGTCTGTTTCTCTTaGCCTTCCACTGCAGAGCAG +
Preference number: 5 (lower is better)
Translates to: ATSSHSAEWREGASSLDRAVCFS*PSTAEQ
Trigger: CTGCTCTGCAGTGGAAGGCAAAGAGAAACAGACAGC...CCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACTAGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp CGACACAGTCTGTTCCCTGCCTGGCTAGCAAGTTTGAGGGTCAGCTTGGTGTGTAGGATGTTAATCCCTTaGAAGATGAGGAAGGCTGTC +
Preference number: 5 (lower is better)
Translates to: RHSLFPAWLASLRVSLVCRMLIP*KMRKAV
Trigger: GACAGCCTTCCTCATCTTCAAAGGGATTAACATCCT...ACACACCAAGCTGACCCTCAAACTTGCTAGCCAGGCAGGGAACAGACTGTGTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp TGTGTGCTCAAAGGTGACTCTGTGGGGCTACAGTTTGGCCTGAGGGCCCTGTCTATGATGATGTACCAATaGTTGACAACGGTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: CVLKGDSVGLQFGLRALSMMMYQ*LTTVSS
Trigger: TGAGCTCACCGTTGTCAACAATTGGTACATCATCAT...AGACAGGGCCCTCAGGCCAAACTGTAGCCCCACAGAGTCACCTTTGAGCACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 90 bp GGCTGTCCGGGGGAGCTCATCAAACCAATGCTGTCTGTTTCTCTTTaGCTTCCACTGCAGAGCAGCGACTTCGTAAATATCATAGAAGTC +
Preference number: 5 (lower is better)
Translates to: GCPGELIKPMLSVSL*LPLQSSDFVNIIEV
Trigger: GACTTCTATGATATTTACGAAGTCGCTGCTCTGCAGTGGAAGGCAAAGAGAAACAGACAGCATTGGTTTGATGAGCTCCCCCGGACAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 90 bp GACTCAGGTCACTTTTGGTTCTCGATCGCCGTCCCAGAAACACCATaGAATTTTGCTGGTATTTCTCCATCTGAGAGAGGGTGTCCAGCA +
Preference number: 5 (lower is better)
Translates to: DSGHFWFSIAVPETP*NFAGISPSERGCPA
Trigger: TGCTGGACACCCTCTCTCAGATGGAGAAATACCAGCAAAATTCCATGGTGTTTCTGGGACGGCGATCGAGAACCAAAAGTGACCTGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACCTTCTAACACTTTTGTCATTGTCAGGAAGCGTTCCCTaGCACTCATCCGGGGCTTGT +
Preference number: 5 (lower is better)
Translates to: ESKLFCLPQGNLLTLLSLSGSVP*HSSGAC
Trigger: ACAAGCCCCGGATGAGTGCAAGGGAACGCTTCCTGA...CAATGACAAAAGTGTTAGAAGGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GTGGCTCTTAACCCATACAAAATGATTGTCTGCACGGTGTGGAGTAAGGCTGGGCTTCCTGGAGGTAGATaGCCGCCTCTTGATAATTCA +
Preference number: 5 (lower is better)
Translates to: VALNPYKMIVCTVWSKAGLPGGR*PPLDNS
Trigger: TGAATTATCAAGAGGCGGCAATCTACCTCCAGGAAG...CCCAGCCTTACTCCACACCGTGCAGACAATCATTTTGTATGGGTTAAGAGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACCTTCTAACACTTTTGTCATTGAGGAGAACGAACAGGTaGACGATGCTGTTCTCCAGG +
Preference number: 5 (lower is better)
Translates to: ESKLFCLPQGNLLTLLSLRRTNR*TMLFSR
Trigger: CCTGGAGAACAGCATCGTCAACCTGTTCGTTCTCCT...CAATGACAAAAGTGTTAGAAGGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp AGTTCTCACTCTGCTGAATGGAGGGAAGGGGCATCTAGCTTAGACAGGGATCCCAAACACCATGGAATTTaGCTGGTATTTCTCCATCTG +
Preference number: 5 (lower is better)
Translates to: SSHSAEWREGASSLDRDPKHHGI*LVFLHL
Trigger: CAGATGGAGAAATACCAGCAAAATTCCATGGTGTTT...GGGATCCCTGTCTAAGCTAGATGCCCCTTCCCTCCATTCAGCAGAGTGAGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS-3UTR CAA 90 bp GAGAGTAAGCTCTTCTGTCTCCCTCAAGGGAACCTTCTAACACTTTTGTCATTGATGATGTACCAATTGTaGACAACGGTGAGCTCAAAC +
Preference number: 5 (lower is better)
Translates to: ESKLFCLPQGNLLTLLSLMMYQL*TTVSSN
Trigger: GTTTGAGCTCACCGTTGTCAACAATTGGTACATCAT...CAATGACAAAAGTGTTAGAAGGTTCCCTTGAGGGAGACAGAAGAGCTTACTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp CTGGGAGCGCTGGCGACTGCCAGGGGGCTGCTGGGCTaGAGGGCCGGGCACGCTGCCCCTGAGCTTCTGCTG +
Preference number: 6 (lower is better)
Translates to: LGALATARGLLG*RAGHAAPELLL
Trigger: CAGCAGAAGCTCAGGGGCAGCGTGCCCGGCCCTGCAGCCCAGCAGCCCCCTGGCAGTCGCCAGCGCTCCCAG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp GCTGCAGGGCCGGGCACGCTGCCCCTGAGCTTCTGCTaGTCCTGTTCCCGGGCATGCTCCTCGTACCACTCC +
Preference number: 6 (lower is better)
Translates to: AAGPGTLPLSFC*SCSRACSSYHS
Trigger: GGAGTGGTACGAGGAGCATGCCCGGGAACAGGAGCAGCAGAAGCTCAGGGGCAGCGTGCCCGGCCCTGCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp TGGGCTGCAGGGCCGGGCACGCTGCCCCTGAGCTTCTaGTGCTCCTGTTCCCGGGCATGCTCCTCGTACCAC +
Preference number: 6 (lower is better)
Translates to: WAAGPGTLPLSF*CSCSRACSSYH
Trigger: GTGGTACGAGGAGCATGCCCGGGAACAGGAGCAGCAGAAGCTCAGGGGCAGCGTGCCCGGCCCTGCAGCCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp CAGCGTAGTGCCCGGGTCACCCGCACGTGGGACGTCTaGCGAACCAGCACCACAATGGCCTCGATGAACTGC +
Preference number: 6 (lower is better)
Translates to: QRSARVTRTWDV*RTSTTMASMNC
Trigger: GCAGTTCATCGAGGCCATTGTGGTGCTGGTTCGGCAGACGTCCCACGTGCGGGTGACCCGGGCACTACGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp GTACACCGCCACAGTAGCGACAGTCCACCAGGAAAATaGAGCGTAGTGCCCGGGTCACCCGCACGTGGGACG +
Preference number: 6 (lower is better)
Translates to: VHRHSSDSPPGK*SVVPGSPARGT
Trigger: CGTCCCACGTGCGGGTGACCCGGGCACTACGCTGCATTTTCCTGGTGGACTGTCGCTACTGTGGCGGTGTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp AGAGGGTGTCCAGCAGCCGGGTCACGTCAGAGGAGGTaGCTCGCTCCTCACGATAAAGCTCCAGGACGGCCA +
Preference number: 6 (lower is better)
Translates to: RGCPAAGSRQRR*LAPHDKAPGRP
Trigger: TGGCCGTCCTGGAGCTTTATCGTGAGGAGCGAGGCACCTCCTCTGACGTGACCCGGCTGCTGGACACCCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 72 bp AGGAAAATGCAGCGTAGTGCCCGGGTCACCCGCACGTaGGACGTCTGCCGAACCAGCACCACAATGGCCTCG +
Preference number: 6 (lower is better)
Translates to: RKMQRSARVTRT*DVCRTSTTMAS
Trigger: CGAGGCCATTGTGGTGCTGGTTCGGCAGACGTCCCACGTGCGGGTGACCCGGGCACTACGCTGCATTTTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp GCTGTGGCTGCCCCCATTTTTGCTGGGCAGCTGCTCTaGGCCCAGGCTGTTCGAAGGAGGCAGCGGAGCACT +
Preference number: 6 (lower is better)
Translates to: AVAAPIFAGQLL*AQAVRRRQRST
Trigger: AGTGCTCCGCTGCCTCCTTCGAACAGCCTGGGCCAAGAGCAGCTGCCCAGCAAAAATGGGGGCAGCCACAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 90 bp GTTGTGGATGCTGTGGCTGCCCCCATTTTTGCTGGGCAGCTGCTCTaGGCCCAGGCTGTTCGAAGGAGGCAGCGGAGCACTCTCAGCCTC +
Preference number: 6 (lower is better)
Translates to: VVDAVAAPIFAGQLL*AQAVRRRQRSTLSL
Trigger: GAGGCTGAGAGTGCTCCGCTGCCTCCTTCGAACAGCCTGGGCCAAGAGCAGCTGCCCAGCAAAAATGGGGGCAGCCACAGCATCCACAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp TGGATGCTGTGGCTGCCCCCATTTTTGCTGGGCAGCTaGTCTTGGCCCAGGCTGTTCGAAGGAGGCAGCGGA +
Preference number: 6 (lower is better)
Translates to: WMLWLPPFLLGS*SWPRLFEGGSG
Trigger: TCCGCTGCCTCCTTCGAACAGCCTGGGCCAAGAGCAGCTGCCCAGCAAAAATGGGGGCAGCCACAGCATCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp TGCACCACGAGGACGGACGTCTTGACCATGGTACGTTaGTGCCGGACGAACGTGTGGAAGCCCAGCCACCGC +
Preference number: 6 (lower is better)
Translates to: CTTRTDVLTMVR*CRTNVWKPSHR
Trigger: GCGGTGGCTGGGCTTCCACACGTTCGTCCGGCACAAACGTACCATGGTCAAGACGTCCGTCCTCGTGGTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp CCTGGGAGTTGTGGATGCTGTGGCTGCCCCCATTTTTaGTGGGCAGCTGCTCTTGGCCCAGGCTGTTCGAAG +
Preference number: 6 (lower is better)
Translates to: PGSCGCCGCPHF*WAAALGPGCSK
Trigger: CTTCGAACAGCCTGGGCCAAGAGCAGCTGCCCAGCAAAAATGGGGGCAGCCACAGCATCCACAACTCCCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp AGAAGCGCATTAAGCCTTCGAACTGCCTGTAGGAGATaGCAGCCGGCCTCCGTTGGCTGGCAAGCAGGCCGT +
Preference number: 6 (lower is better)
Translates to: RSALSLRTACRR*QPASVGWQAGR
Trigger: ACGGCCTGCTTGCCAGCCAACGGAGGCCGGCTGGCATCTCCTACAGGCAGTTCGAAGGCTTAATGCGCTTCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 72 bp GGTAGGCCGCCAGCGCTCTGGCATCCTTGGGGTGGGTaGAGAACTTGTCGTTGTTCTGACCTTCCTGGAGGT +
Preference number: 6 (lower is better)
Translates to: GRPPALWHPWGG*RTCRCSDLPGG
Trigger: ACCTCCAGGAAGGTCAGAACAACGACAAGTTCTTCACCCACCCCAAGGATGCCAGAGCGCTGGCGGCCTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp ACCACGAGGACGGACGTCTTGACCATGGTACGTTTGTaGCGGACGAACGTGTGGAAGCCCAGCCACCGCAAT +
Preference number: 6 (lower is better)
Translates to: TTRTDVLTMVRL*RTNVWKPSHRN
Trigger: ATTGCGGTGGCTGGGCTTCCACACGTTCGTCCGGCACAAACGTACCATGGTCAAGACGTCCGTCCTCGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 72 bp AGCAACAGGAGGATGTCCATGAAGGGTGGGAGAGACTaGAAGATCTGCCGCAGGTTGCGCCGTACACCGCCA +
Preference number: 6 (lower is better)
Translates to: SNRRMSMKGGRD*KICRRLRRTPP
Trigger: TGGCGGTGTACGGCGCAACCTGCGGCAGATCTTCCAGTCTCTCCCACCCTTCATGGACATCCTCCTGTTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp ACCTGGGAGTTGTGGATGCTGTGGCTGCCCCCATTTTaGCTGGGCAGCTGCTCTTGGCCCAGGCTGTTCGAA +
Preference number: 6 (lower is better)
Translates to: TWELWMLWLPPF*LGSCSWPRLFE
Trigger: TTCGAACAGCCTGGGCCAAGAGCAGCTGCCCAGCAAAAATGGGGGCAGCCACAGCATCCACAACTCCCAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 90 bp AGCACCACAATGGCCTCGATGAACTGCACCACGAGGACGGACGTCTaGACCATGGTACGTTTGTGCCGGACGAACGTGTGGAAGCCCAGC +
Preference number: 6 (lower is better)
Translates to: STTMASMNCTTRTDV*TMVRLCRTNVWKPS
Trigger: GCTGGGCTTCCACACGTTCGTCCGGCACAAACGTACCATGGTCAAGACGTCCGTCCTCGTGGTGCAGTTCATCGAGGCCATTGTGGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 72 bp CGCAGGACCAGGGGTTCCGGGAGTAGGAGGGCATCATaGCATCTGGAAAGTTGGCTGTGGTCAGGAGAACGA +
Preference number: 6 (lower is better)
Translates to: RRTRGSGSRRAS*HLESWLWSGER
Trigger: TCGTTCTCCTGACCACAGCCAACTTTCCAGATGTCATGATGCCCTCCTACTCCCGGAACCCCTGGTCCTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 72 bp GCGTCAGTGCGAGCAGTCCCAGGAAGGCGAATGCCGTaGCCGAGAAATCGAACAGGTTCCATCCAGAGGACA +
Preference number: 6 (lower is better)
Translates to: ASVRAVPGRRMP*PRNRTGSIQRT
Trigger: TGTCCTCTGGATGGAACCTGTTCGATTTCTCGGTCACGGCATTCGCCTTCCTGGGACTGCTCGCACTGACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 72 bp TGCTGGTGTTGCAGCAGTTGGGGGTCAGCCGCCCGTTaGAGAACTCCATGCCCACGATGGCGAAGGAATAGT +
Preference number: 6 (lower is better)
Translates to: CWCCSSWGSAAR*RTPCPRWRRNS
Trigger: ACTATTCCTTCGCCATCGTGGGCATGGAGTTCTTCAACGGGCGGCTGACCCCCAACTGCTGCAACACCAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 72 bp GGCCAAGGCTGGCCATCCGCGGCAGCAGCTCAAACATaGTGTCCAACACGTTGCGGTAGCGTTTCTTCAGTT +
Preference number: 6 (lower is better)
Translates to: GQGWPSAAAAQT*CPTRCGSVSSV
Trigger: AACTGAAGAAACGCTACCGCAACGTGTTGGACACCATGTTTGAGCTGCTGCCGCGGATGGCCAGCCTTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp ATGGCCTCGATGAACTGCACCACGAGGACGGACGTCTaGACCATGGTACGTTTGTGCCGGACGAACGTGTGG +
Preference number: 6 (lower is better)
Translates to: MASMNCTTRTDV*TMVRLCRTNVW
Trigger: CCACACGTTCGTCCGGCACAAACGTACCATGGTCAAGACGTCCGTCCTCGTGGTGCAGTTCATCGAGGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 90 bp TCGATGAACTGCACCACGAGGACGGACGTCTTGACCATGGTACGTTaGTGCCGGACGAACGTGTGGAAGCCCAGCCACCGCAATTTCATG +
Preference number: 6 (lower is better)
Translates to: SMNCTTRTDVLTMVR*CRTNVWKPSHRNFM
Trigger: CATGAAATTGCGGTGGCTGGGCTTCCACACGTTCGTCCGGCACAAACGTACCATGGTCAAGACGTCCGTCCTCGTGGTGCAGTTCATCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp GTTGAGCGTCAGTGCGAGCAGTCCCAGGAAGGCGAATaGCGTGACCGAGAAATCGAACAGGTTCCATCCAGA +
Preference number: 6 (lower is better)
Translates to: VERQCEQSQEGE*RDREIEQVPSR
Trigger: TCTGGATGGAACCTGTTCGATTTCTCGGTCACGGCATTCGCCTTCCTGGGACTGCTCGCACTGACGCTCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 72 bp CCAGGGGTTCCGGGAGTAGGAGGGCATCATGACATCTaGAAAGTTGGCTGTGGTCAGGAGAACGAACAGGTT +
Preference number: 6 (lower is better)
Translates to: PGVPGVGGHHDI*KVGCGQENEQV
Trigger: AACCTGTTCGTTCTCCTGACCACAGCCAACTTTCCAGATGTCATGATGCCCTCCTACTCCCGGAACCCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 72 bp TGGTCATCACCACCATGGTCACTATGTAAAAGGTCATaGAGTACAGGCGGCTCCAGTGGGACGTCTGCGAGG +
Preference number: 6 (lower is better)
Translates to: WSSPPWSLCKRS*STGGSSGTSAR
Trigger: CCTCGCAGACGTCCCACTGGAGCCGCCTGTACTTCATGACCTTTTACATAGTGACCATGGTGGTGATGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp CACAATGAAATAGAAGGGTTCCATGTTGAGCGTCAGTaGGAGCAGTCCCAGGAAGGCGAATGCCGTGACCGA +
Preference number: 6 (lower is better)
Translates to: HNEIEGFHVERQ*EQSQEGECRDR
Trigger: TCGGTCACGGCATTCGCCTTCCTGGGACTGCTCGCACTGACGCTCAACATGGAACCCTTCTATTTCATTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp AAGGTCATGAAGTACAGGCGGCTCCAGTGGGACGTCTaGGAGGTGACGCCTTCCATGATGATGTACCAATTG +
Preference number: 6 (lower is better)
Translates to: KVMKYRRLQWDV*EVTPSMMMYQL
Trigger: CAATTGGTACATCATCATGGAAGGCGTCACCTCGCAGACGTCCCACTGGAGCCGCCTGTACTTCATGACCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 72 bp GTCTTGACCATGGTACGTTTGTGCCGGACGAACGTGTaGAAGCCCAGCCACCGCAATTTCATGCAGAGTTCA +
Preference number: 6 (lower is better)
Translates to: VLTMVRLCRTNV*KPSHRNFMQSS
Trigger: TGAACTCTGCATGAAATTGCGGTGGCTGGGCTTCCACACGTTCGTCCGGCACAAACGTACCATGGTCAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 90 bp GCATGCTGGATGGCGGTCCGTTTGTGCAGCAGCAAAGACTTGAACTaGTGCTTTTCAATGTCGTTGAAGGTGTCGAACACCACGGCCAGG +
Preference number: 6 (lower is better)
Translates to: ACWMAVRLCSSKDLN*CFSMSLKVSNTTAR
Trigger: CCTGGCCGTGGTGTTCGACACCTTCAACGACATTGAAAAGCACAAGTTCAAGTCTTTGCTGCTGCACAAACGGACCGCCATCCAGCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 72 bp ACCGCAATTTCATGCAGAGTTCAAATACCACCACCATaGGGGCAAAGAGTTCCAGCGTGGCGTGGACGTAAG +
Preference number: 6 (lower is better)
Translates to: TAISCRVQIPPP*GQRVPAWRGRK
Trigger: CTTACGTCCACGCCACGCTGGAACTCTTTGCCCTCATGGTGGTGGTATTTGAACTCTGCATGAAATTGCGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp GTTGTTCTGACCTTCCTGGAGGTAGATTGCCGCCTCTaGATAATTCATCTCCCAGTTGTGTCCGGTGGGACT +
Preference number: 6 (lower is better)
Translates to: VVLTFLEVDCRL*IIHLPVVSGGT
Trigger: AGTCCCACCGGACACAACTGGGAGATGAATTATCAAGAGGCGGCAATCTACCTCCAGGAAGGTCAGAACAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp GGTTCTCGATCGCCGTCCCAGAAACACCATGGAATTTaGCTGGTATTTCTCCATCTGAGAGAGGGTGTCCAG +
Preference number: 6 (lower is better)
Translates to: GSRSPSQKHHGI*LVFLHLREGVQ
Trigger: CTGGACACCCTCTCTCAGATGGAGAAATACCAGCAAAATTCCATGGTGTTTCTGGGACGGCGATCGAGAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 72 bp TCTCCTCCTGGTACATCTTCAGACTCAGGTCACTTTTaGTTCTCGATCGCCGTCCCAGAAACACCATGGAAT +
Preference number: 6 (lower is better)
Translates to: SPPGTSSDSGHF*FSIAVPETPWN
Trigger: ATTCCATGGTGTTTCTGGGACGGCGATCGAGAACCAAAAGTGACCTGAGTCTGAAGATGTACCAGGAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp TGCTGGATGGCGGTCCGTTTGTGCAGCAGCAAAGACTaGAACTTGTGCTTTTCAATGTCGTTGAAGGTGTCG +
Preference number: 6 (lower is better)
Translates to: CWMAVRLCSSKD*NLCFSMSLKVS
Trigger: CGACACCTTCAACGACATTGAAAAGCACAAGTTCAAGTCTTTGCTGCTGCACAAACGGACCGCCATCCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp TGCGAGGTGACGCCTTCCATGATGATGTACCAATTGTaGACAACGGTGAGCTCAAACAAGGTCACGAAGCTG +
Preference number: 6 (lower is better)
Translates to: CEVTPSMMMYQL*TTVSSNKVTKL
Trigger: CAGCTTCGTGACCTTGTTTGAGCTCACCGTTGTCAACAATTGGTACATCATCATGGAAGGCGTCACCTCGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp GTCTGCGAGGTGACGCCTTCCATGATGATGTACCAATaGTTGACAACGGTGAGCTCAAACAAGGTCACGAAG +
Preference number: 6 (lower is better)
Translates to: VCEVTPSMMMYQ*LTTVSSNKVTK
Trigger: CTTCGTGACCTTGTTTGAGCTCACCGTTGTCAACAATTGGTACATCATCATGGAAGGCGTCACCTCGCAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp ATCTCCTCCTGGTACATCTTCAGACTCAGGTCACTTTaGGTTCTCGATCGCCGTCCCAGAAACACCATGGAA +
Preference number: 6 (lower is better)
Translates to: ISSWYIFRLRSL*VLDRRPRNTME
Trigger: TTCCATGGTGTTTCTGGGACGGCGATCGAGAACCAAAAGTGACCTGAGTCTGAAGATGTACCAGGAGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS GCA 72 bp GGGGAGCTCATCAAACCAATGCTGTCTGTTTCTCTTTaGCTTCCACTGCAGAGCAGCGACTTCGTAAATATC +
Preference number: 6 (lower is better)
Translates to: GELIKPMLSVSL*LPLQSSDFVNI
Trigger: GATATTTACGAAGTCGCTGCTCTGCAGTGGAAGGCAAAGAGAAACAGACAGCATTGGTTTGATGAGCTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CCA 72 bp CACTTTTGGTTCTCGATCGCCGTCCCAGAAACACCATaGAATTTTGCTGGTATTTCTCCATCTGAGAGAGGG +
Preference number: 6 (lower is better)
Translates to: HFWFSIAVPETP*NFAGISPSERG
Trigger: CCCTCTCTCAGATGGAGAAATACCAGCAAAATTCCATGGTGTTTCTGGGACGGCGATCGAGAACCAAAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS CAA 72 bp ATGGCGGTCCGTTTGTGCAGCAGCAAAGACTTGAACTaGTGCTTTTCAATGTCGTTGAAGGTGTCGAACACC +
Preference number: 6 (lower is better)
Translates to: MAVRLCSSKDLN*CFSMSLKVSNT
Trigger: GGTGTTCGACACCTTCAACGACATTGAAAAGCACAAGTTCAAGTCTTTGCTGCTGCACAAACGGACCGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10
CDS TCA 72 bp GGTAAGAAACACGAGGTAACTCCAGGGCACATGCTTTaGGGTGAAATTCCCACCTTTCAACATGAATGTCTC +
Preference number: 6 (lower is better)
Translates to: GKKHEVTPGHML*GEIPTFQHECL
Trigger: GAGACATTCATGTTGAAAGGTGGGAATTTCACCTCAAAGCATGTGCCCTGGAGTTACCTCGTGTTTCTTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046426.10