Pregenerated sensors for TPBPB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062705

Ensembl transcript IDs: ENSMUST00000080766.8, ENSMUST00000223698.2, ENSMUST00000223978.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	AGGGCACTAGCCATGTCTAAAGCTCAGCAAGCAGTACATGTACCATaGGCAAGAAGGGAAGGTAGTCACCTACAACCACATATCAACTCC	+
Preference number: 1 (lower is better) Translates to: RALAMSKAQQAVHVP*ARREGSHLQPHINS Trigger: GGAGTTGATATGTGGTTGTAGGTGACTACCTTCCCTTCTTGCTCATGGTACATGTACTGCTTGCTGAGCTTTAGACATGGCTAGTGCCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR CCA 90 bp	GAAGGTAGTCACCTACAACCACATATCAACTCCAGCCACATTGCATaGAGCAGAACACTTAGACAGTGGACTGCATGTTGTTCCACAGCT	+
Preference number: 1 (lower is better) Translates to: EGSHLQPHINSSHIA*SRTLRQWTACCSTA Trigger: AGCTGTGGAACAACATGCAGTCCACTGTCTAAGTGTTCTGCTCCATGCAATGTGGCTGGAGTTGATATGTGGTTGTAGGTGACTACCTTC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR GCA 90 bp	AAAAATGTAGCTCAGTGGCTTTATCATAGTATCTCCTGGAATGTATaGCTTTCAAGGGCACTAGCCATGTCTAAAGCTCAGCAAGCAGTA	+
Preference number: 1 (lower is better) Translates to: KNVAQWLYHSISWNV*LSRALAMSKAQQAV Trigger: TACTGCTTGCTGAGCTTTAGACATGGCTAGTGCCCTTGAAAGGCATACATTCCAGGAGATACTATGATAAAGCCACTGAGCTACATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR-3UTR CCA 90 bp	CTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATCAGGGGCTACTGAGTTaGGGAGGCCCCTGCTGTTTT	+
Preference number: 2 (lower is better) Translates to: LALVPVQIFFFTIRQFTYQGLLS*GGPCCF Trigger: AAAACAGCAGGGGCCTCCCCAACTCAGTAGCCCCTG...ATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
3UTR-3UTR CCA 90 bp	GTATGCCTTTCAAGGGCACTAGCCATGTCTAAAGCTCAGCAAGCAGTACATGTATCCAGCCACATTGCATaGAGCAGAACACTTAGACAG	+
Preference number: 2 (lower is better) Translates to: VCLSRALAMSKAQQAVHVSSHIA*SRTLRQ Trigger: CTGTCTAAGTGTTCTGCTCCATGCAATGTGGCTGGA...TACATGTACTGCTTGCTGAGCTTTAGACATGGCTAGTGCCCTTGAAAGGCATAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR-3UTR CCA 90 bp	GTATGCCTTTCAAGGGCACTAGCCATGTCTAAAGCTCAGCAAGCAGTACATGTAAGGCAGTTCACATATTaGGGCAGACATCTGTTAGAC	+
Preference number: 2 (lower is better) Translates to: VCLSRALAMSKAQQAVHVRQFTY*GRHLLD Trigger: GTCTAACAGATGTCTGCCCCAATATGTGAACTGCCT...TACATGTACTGCTTGCTGAGCTTTAGACATGGCTAGTGCCCTTGAAAGGCATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR-3UTR CCA 90 bp	TTTATGCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCAGGCAGTTCACATATTaGGGCAGACATCTGTTAGAC	+
Preference number: 2 (lower is better) Translates to: FMLALVPVQIFFFTIRQFRQFTY*GRHLLD Trigger: GTCTAACAGATGTCTGCCCCAATATGTGAACTGCCT...GAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGCATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
3UTR-3UTR CCA 90 bp	CTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATGCTTCAGTTCCTTCTTaGCTTCCATGTGGGAATGTA	+
Preference number: 2 (lower is better) Translates to: LALVPVQIFFFTIRQFTYASVPS*LPCGNV Trigger: TACATTCCCACATGGAAGCCAAGAAGGAACTGAAGC...ATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR-3UTR CCA 90 bp	TTTATGCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCTATCATAGTATCTCCTaGAATGTATGCCTTTCAAGG	+
Preference number: 2 (lower is better) Translates to: FMLALVPVQIFFFTIRQFYHSIS*NVCLSR Trigger: CCTTGAAAGGCATACATTCCAGGAGATACTATGATA...GAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGCATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR TCA 72 bp	GCCATGTCTAAAGCTCAGCAAGCAGTACATGTACCATaGGCAAGAAGGGAAGGTAGTCACCTACAACCACAT	+
Preference number: 3 (lower is better) Translates to: AMSKAQQAVHVP*ARREGSHLQPH Trigger: ATGTGGTTGTAGGTGACTACCTTCCCTTCTTGCTCATGGTACATGTACTGCTTGCTGAGCTTTAGACATGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR CCA 72 bp	CACCTACAACCACATATCAACTCCAGCCACATTGCATaGAGCAGAACACTTAGACAGTGGACTGCATGTTGT	+
Preference number: 3 (lower is better) Translates to: HLQPHINSSHIA*SRTLRQWTACC Trigger: ACAACATGCAGTCCACTGTCTAAGTGTTCTGCTCCATGCAATGTGGCTGGAGTTGATATGTGGTTGTAGGTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR CCA 72 bp	TCCAGCCACATTGCATGGAGCAGAACACTTAGACAGTaGACTGCATGTTGTTCCACAGCTGATATAAATGAG	+
Preference number: 3 (lower is better) Translates to: SSHIAWSRTLRQ*TACCSTADINE Trigger: CTCATTTATATCAGCTGTGGAACAACATGCAGTCCACTGTCTAAGTGTTCTGCTCCATGCAATGTGGCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
3UTR CCA 72 bp	CAGATCTTCTTTTTCACCATAAGGCAGTTCACATATTaGGGCAGACATCTGTTAGACAACAGCACAGTGGCT	+
Preference number: 3 (lower is better) Translates to: QIFFFTIRQFTY*GRHLLDNSTVA Trigger: AGCCACTGTGCTGTTGTCTAACAGATGTCTGCCCCAATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
3UTR CCA 72 bp	AAAAATGTAGCTCAGTGGCTTTATCATAGTATCTCCTaGAATGTATGCCTTTCAAGGGCACTAGCCATGTCT	+
Preference number: 3 (lower is better) Translates to: KNVAQWLYHSIS*NVCLSRALAMS Trigger: AGACATGGCTAGTGCCCTTGAAAGGCATACATTCCAGGAGATACTATGATAAAGCCACTGAGCTACATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
CDS-3UTR TCA 90 bp	TGGAATGTATGCCTTTCAAGGGCACTAGCCATGTCTAAAGCTCAGCAAGCAGTAAGGGATTATAGCAGCTaGGGCCACACCCAGGCACAG	+
Preference number: 4 (lower is better) Translates to: WNVCLSRALAMSKAQQAVRDYSS*GHTQAQ Trigger: CTGTGCCTGGGTGTGGCCTCAGCTGCTATAATCCCT...TACTGCTTGCTGAGCTTTAGACATGGCTAGTGCCCTTGAAAGGCATACATTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
CDS-3UTR TCA 90 bp	CTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATAGGGATTATAGCAGCTaGGGCCACACCCAGGCACAG	+
Preference number: 4 (lower is better) Translates to: LALVPVQIFFFTIRQFTYRDYSS*GHTQAQ Trigger: CTGTGCCTGGGTGTGGCCTCAGCTGCTATAATCCCT...ATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR TCA 90 bp	TTTTATGCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTAGGGATTATAGCAGCTaGGGCCACACCCAGGCACAG	+
Preference number: 4 (lower is better) Translates to: FYACPCPSSDLLFHHKAVRDYSS*GHTQAQ Trigger: CTGTGCCTGGGTGTGGCCTCAGCTGCTATAATCCCT...AACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGCATAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CCA 90 bp	CCATGTCTAAAGCTCAGCAAGCAGTACATGTACCATGAGCAAGAAGGGAAGGTAATGCCATCCTTCTCCTaGTCATTTTTGCTATTGTTC	+
Preference number: 4 (lower is better) Translates to: PCLKLSKQYMYHEQEGKVMPSFS*SFLLLF Trigger: GAACAATAGCAAAAATGACCAGGAGAAGGATGGCAT...TACCTTCCCTTCTTGCTCATGGTACATGTACTGCTTGCTGAGCTTTAGACATGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
CDS-3UTR CCA 90 bp	CTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATAGGGTCATCAACAACTaGCTGTGTTTTCTCCTCTTC	+
Preference number: 4 (lower is better) Translates to: LALVPVQIFFFTIRQFTYRVINN*LCFLLF Trigger: GAAGAGGAGAAAACACAGCCAGTTGTTGATGACCCT...ATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CCA 90 bp	TGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATTGAGGGTCATCAACAACTaGCTGTGTTTTCTCCTCTTC	+
Preference number: 4 (lower is better) Translates to: CPCPSSDLLFHHKAVHILRVINN*LCFLLF Trigger: GAAGAGGAGAAAACACAGCCAGTTGTTGATGACCCT...CAATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR TCA 90 bp	CCATGTCTAAAGCTCAGCAAGCAGTACATGTACCATGAGCAAGAAGGGAAGGTATATTGTTCAGTTTCATaGCAAACTCATTCCACGTTG	+
Preference number: 4 (lower is better) Translates to: PCLKLSKQYMYHEQEGKVYCSVS*QTHSTL Trigger: CAACGTGGAATGAGTTTGTCATGAAACTGAACAATA...TACCTTCCCTTCTTGCTCATGGTACATGTACTGCTTGCTGAGCTTTAGACATGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
CDS-3UTR CCA 90 bp	TTTATGCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCATGCCATCCTTCTCCTaGTCATTTTTGCTATTGTTC	+
Preference number: 4 (lower is better) Translates to: FMLALVPVQIFFFTIRQFMPSFS*SFLLLF Trigger: GAACAATAGCAAAAATGACCAGGAGAAGGATGGCAT...GAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGCATAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CCA 90 bp	CTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATATGCCATCCTTCTCCTaGTCATTTTTGCTATTGTTC	+
Preference number: 4 (lower is better) Translates to: LALVPVQIFFFTIRQFTYMPSFS*SFLLLF Trigger: GAACAATAGCAAAAATGACCAGGAGAAGGATGGCAT...ATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR TCA 90 bp	CTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATTATTGTTCAGTTTCATaGCAAACTCATTCCACGTTG	+
Preference number: 4 (lower is better) Translates to: LALVPVQIFFFTIRQFTYYCSVS*QTHSTL Trigger: CAACGTGGAATGAGTTTGTCATGAAACTGAACAATA...ATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS TCA 90 bp	CTCTTGCACTTCAGTATCCAAAGTTGGTTCAGGGATTATAGCAGCTaGGGCCACACCCAGGCACAGGATGACCAAGAAGACTGTAGGAGT	+
Preference number: 5 (lower is better) Translates to: LLHFSIQSWFRDYSS*GHTQAQDDQEDCRS Trigger: ACTCCTACAGTCTTCTTGGTCATCCTGTGCCTGGGTGTGGCCTCAGCTGCTATAATCCCTGAACCAACTTTGGATACTGAAGTGCAAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS CCA 90 bp	ATCGCCACTCTCTGTGTAATCCTCAAATTCAGGGTCATCAACAACTaGCTGTGTTTTCTCCTCTTCCAACATTGGGTGGAAAATGTTAGT	+
Preference number: 5 (lower is better) Translates to: IATLCVILKFRVINN*LCFLLFQHWVENVS Trigger: ACTAACATTTTCCACCCAATGTTGGAAGAGGAGAAAACACAGCCAGTTGTTGATGACCCTGAATTTGAGGATTACACAGAGAGTGGCGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CAA 90 bp	GCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATTTATCCTTCTGCTCTaGCACTTCAGTATCCAAAGT	+
Preference number: 5 (lower is better) Translates to: ACPCPSSDLLFHHKAVHIFILLL*HFSIQS Trigger: ACTTTGGATACTGAAGTGCAAGAGCAGAAGGATAAA...TATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CAA 90 bp	GTATGCCTTTCAAGGGCACTAGCCATGTCTAAAGCTCAGCAAGCAGTACATGTATTCTCCTGGTCATTTTaGCTATTGTTCAGTTTCATG	+
Preference number: 5 (lower is better) Translates to: VCLSRALAMSKAQQAVHVFSWSF*LLFSFM Trigger: CATGAAACTGAACAATAGCAAAAATGACCAGGAGAA...TACATGTACTGCTTGCTGAGCTTTAGACATGGCTAGTGCCCTTGAAAGGCATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223978.2
CDS-3UTR CAA 90 bp	TGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATTGTTTATCCTTCTGCTCTaGCACTTCAGTATCCAAAGT	+
Preference number: 5 (lower is better) Translates to: CPCPSSDLLFHHKAVHILFILLL*HFSIQS Trigger: ACTTTGGATACTGAAGTGCAAGAGCAGAAGGATAAA...CAATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CAA 90 bp	CTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCACATATTTCCACGTTGCTTTTTaGAGTCCTTCTTTATCCTTC	+
Preference number: 5 (lower is better) Translates to: LALVPVQIFFFTIRQFTYFHVAF*SPSLSF Trigger: GAAGGATAAAGAAGGACTCAAAAAAGCAACGTGGAA...ATATGTGAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CAA 90 bp	TTTTATGCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTTTTATCCTTCTGCTCTaGCACTTCAGTATCCAAAGT	+
Preference number: 5 (lower is better) Translates to: FYACPCPSSDLLFHHKAVFILLL*HFSIQS Trigger: ACTTTGGATACTGAAGTGCAAGAGCAGAAGGATAAA...AACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGCATAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CAA 90 bp	TTTTATGCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTTTCCACGTTGCTTTTTaGAGTCCTTCTTTATCCTTC	+
Preference number: 5 (lower is better) Translates to: FYACPCPSSDLLFHHKAVFHVAF*SPSLSF Trigger: GAAGGATAAAGAAGGACTCAAAAAAGCAACGTGGAA...AACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGCATAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CAA 90 bp	TTTATGCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTCTTCTCCTGGTCATTTTaGCTATTGTTCAGTTTCATG	+
Preference number: 5 (lower is better) Translates to: FMLALVPVQIFFFTIRQFFSWSF*LLFSFM Trigger: CATGAAACTGAACAATAGCAAAAATGACCAGGAGAA...GAACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGCATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS-3UTR CAA 90 bp	TTTTATGCTTGCCCTTGTCCCAGTTCAGATCTTCTTTTTCACCATAAGGCAGTTTTCTCCTGGTCATTTTaGCTATTGTTCAGTTTCATG	+
Preference number: 5 (lower is better) Translates to: FYACPCPSSDLLFHHKAVFSWSF*LLFSFM Trigger: CATGAAACTGAACAATAGCAAAAATGACCAGGAGAA...AACTGCCTTATGGTGAAAAAGAAGATCTGAACTGGGACAAGGGCAAGCATAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS TCA 72 bp	TTCAGTATCCAAAGTTGGTTCAGGGATTATAGCAGCTaGGGCCACACCCAGGCACAGGATGACCAAGAAGAC	+
Preference number: 6 (lower is better) Translates to: FSIQSWFRDYSS*GHTQAQDDQED Trigger: GTCTTCTTGGTCATCCTGTGCCTGGGTGTGGCCTCAGCTGCTATAATCCCTGAACCAACTTTGGATACTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS CCA 72 bp	CTCTGTGTAATCCTCAAATTCAGGGTCATCAACAACTaGCTGTGTTTTCTCCTCTTCCAACATTGGGTGGAA	+
Preference number: 6 (lower is better) Translates to: LCVILKFRVINN*LCFLLFQHWVE Trigger: TTCCACCCAATGTTGGAAGAGGAGAAAACACAGCCAGTTGTTGATGACCCTGAATTTGAGGATTACACAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS CAA 90 bp	AAGACTCTCAATTCTATGTCGATGCCATCCTTCTCCTGGTCATTTTaGCTATTGTTCAGTTTCATGACAAACTCATTCCACGTTGCTTTT	+
Preference number: 6 (lower is better) Translates to: KTLNSMSMPSFSWSF*LLFSFMTNSFHVAF Trigger: AAAAGCAACGTGGAATGAGTTTGTCATGAAACTGAACAATAGCAAAAATGACCAGGAGAAGGATGGCATCGACATAGAATTGAGAGTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS CCA 72 bp	AAGACTCTCAATTCTATGTCGATGCCATCCTTCTCCTaGTCATTTTTGCTATTGTTCAGTTTCATGACAAAC	+
Preference number: 6 (lower is better) Translates to: KTLNSMSMPSFS*SFLLLFSFMTN Trigger: GTTTGTCATGAAACTGAACAATAGCAAAAATGACCAGGAGAAGGATGGCATCGACATAGAATTGAGAGTCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS CAA 72 bp	AATTCTATGTCGATGCCATCCTTCTCCTGGTCATTTTaGCTATTGTTCAGTTTCATGACAAACTCATTCCAC	+
Preference number: 6 (lower is better) Translates to: NSMSMPSFSWSF*LLFSFMTNSFH Trigger: GTGGAATGAGTTTGTCATGAAACTGAACAATAGCAAAAATGACCAGGAGAAGGATGGCATCGACATAGAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2
CDS TCA 72 bp	TTAGTCATTATTTTCATTAGTTCTTCATCAGTCAGCTaGCCAAAGAAGACTCTCAATTCTATGTCGATGCCA	+
Preference number: 6 (lower is better) Translates to: LVIIFISSSSVS*PKKTLNSMSMP Trigger: TGGCATCGACATAGAATTGAGAGTCTTCTTTGGTCAGCTGACTGATGAAGAACTAATGAAAATAATGACTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080766.8 ENSMUST00000223698.2 ENSMUST00000223978.2

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