Pregenerated sensors for TPBPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033834Ensembl transcript IDs: ENSMUST00000021885.8, ENSMUST00000225275.2, ENSMUST00000225936.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCCCAGTTCAGATCTTCTTTTTCACCATCAGGCAGTTCATATGTTaGGGCAGAGATTTCTTAGACAATGGCACAGTGGCTGTTTCGCTC | + |
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Preference number: 1 (lower is better) Translates to: APVQIFFFTIRQFIC*GRDFLDNGTVAVSL Trigger: GAGCGAAACAGCCACTGTGCCATTGTCTAAGAAATCTCTGCCCCAACATATGAACTGCCTGATGGTGAAAAAGAAGATCTGAACTGGGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| 3UTR TCA 90 bp | TGTAAAACAGTAGTCATTATTTTCATGAGTTCTTCATCAGTTAGCTaGCCGGAGGCACTCATTTCTATGTTGGAGCCTTCCGTCTCCTGG | + |
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Preference number: 1 (lower is better) Translates to: CKTVVIIFMSSSSVS*PEALISMLEPSVSW Trigger: CCAGGAGACGGAAGGCTCCAACATAGAAATGAGTGCCTCCGGTCAGCTAACTGATGAAGAACTCATGAAAATAATGACTACTGTTTTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR TCA 90 bp | CCTGAGGAACAAAACATAATAAAGGATGGAATACTGATTCTATATTaGAACGACCACTCACACTCTTCTCTGAACACCAGCACACAGTTA | + |
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Preference number: 1 (lower is better) Translates to: PEEQNIIKDGILILY*NDHSHSSLNTSTQL Trigger: TAACTGTGTGCTGGTGTTCAGAGAAGAGTGTGAGTGGTCGTTTCAATATAGAATCAGTATTCCATCCTTTATTATGTTTTGTTCCTCAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| 3UTR GCA 90 bp | TTCGCTACTGTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTaGTTTTATGAGAACTTCTTTATCCTAGAAATGAACACAAGTGAC | + |
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Preference number: 1 (lower is better) Translates to: FATVKFVSLHKLTPH*FYENFFILEMNTSD Trigger: GTCACTTGTGTTCATTTCTAGGATAAAGAAGTTCTCATAAAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGTAGCGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR-3UTR TCA 90 bp | TCAACAACTGGCTGTGGTTTGTTTTCCTCCTCTTCAAACATTGGGTGTAAAACATCTTCATCAGTTAGCTaGCCGGAGGCACTCATTTCT | + |
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Preference number: 2 (lower is better) Translates to: STTGCGLFSSSSNIGCKTSSSVS*PEALIS Trigger: AGAAATGAGTGCCTCCGGTCAGCTAACTGATGAAGA...TGTTTTACACCCAATGTTTGAAGAGGAGGAAAACAAACCACAGCCAGTTGTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR-3UTR CCA 90 bp | ACCAGCACACAGTTAATTATGCCTTCACACAGAACTATGTCTTATCCACCTAACCAGGGGATACTGAATTaGGGAAGTCCCTGCTGTTTT | + |
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Preference number: 2 (lower is better) Translates to: TSTQLIMPSHRTMSYPPNQGILN*GSPCCF Trigger: AAAACAGCAGGGACTTCCCCAATTCAGTATCCCCTG...GTTAGGTGGATAAGACATAGTTCTGTGTGAAGGCATAATTAACTGTGTGCTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTGCTTTTATGAGAACGGTGAAGAGGAGTCATaGGGAGGGATCACTGTACAC | + |
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Preference number: 2 (lower is better) Translates to: TVKFVSLHKLTPHCFYENGEEES*GGITVH Trigger: GTGTACAGTGATCCCTCCCCATGACTCCTCTTCACC...GTTCTCATAAAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTTCGCTACTGTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTGCTTTATTTACAGTGAGAGGTaGAGAGGAGTCATGGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: IFATVKFVSLHKLTPHCFIYSER*RGVMGR Trigger: CCTCCCCATGACTCCTCTTCACCTCTCACTGTAAAT...AAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGTAGCGAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR-3UTR CCA 90 bp | TCAACAACTGGCTGTGGTTTGTTTTCCTCCTCTTCAAACATTGGGTGTAAAACAGTGCACTCTGCATTTTaGAAATGTTGGTCTCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: STTGCGLFSSSSNIGCKTVHSAF*KCWSPC Trigger: ACAAGGAGACCAACATTTCCAAAATGCAGAGTGCAC...TGTTTTACACCCAATGTTTGAAGAGGAGGAAAACAAACCACAGCCAGTTGTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR-3UTR GCA 90 bp | ACTGTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTGCTTTTATGAGAACCCTTTCTGTGCACTCTaGATTTTGGAAATGTTGGTC | + |
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Preference number: 2 (lower is better) Translates to: TVKFVSLHKLTPHCFYENPFCAL*ILEMLV Trigger: GACCAACATTTCCAAAATGCAGAGTGCACAGAAAGG...GTTCTCATAAAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR CAA 90 bp | TTAATTATGCCTTCACACAGAACTATGTCTTATCCACCTAACAATTaGCCTTCACAAAACCTGAAAGAAACCAGAACACTGCCTTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: LIMPSHRTMSYPPNN*PSQNLKETRTLPFE Trigger: TTCAAAAGGCAGTGTTCTGGTTTCTTTCAGGTTTTGTGAAGGCAAATTGTTAGGTGGATAAGACATAGTTCTGTGTGAAGGCATAATTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| 3UTR-3UTR CCA 90 bp | ATTTTCGCTACTGTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTGCTTTGCATTTTGGAAATGTTaGTCTCCTTGTATTCATAGT | + |
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Preference number: 2 (lower is better) Translates to: IFATVKFVSLHKLTPHCFAFWKC*SPCIHS Trigger: ACTATGAATACAAGGAGACCAACATTTCCAAAATGC...AAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGTAGCGAAAAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR CCA 72 bp | CATCAGTTAGCTGACCGGAGGCACTCATTTCTATGTTaGAGCCTTCCGTCTCCTGGTCATTTTCGCTACTGT | + |
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Preference number: 3 (lower is better) Translates to: HQLADRRHSFLC*SLPSPGHFRYC Trigger: ACAGTAGCGAAAATGACCAGGAGACGGAAGGCTCCAACATAGAAATGAGTGCCTCCGGTCAGCTAACTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR-3UTR CAA 90 bp | TCAACAACTGGCTGTGGTTTGTTTTCCTCCTCTTCAAACATTGGGTGTAAAACAGCACTCATTTCTATGTaGGAGCCTTCCGTCTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: STTGCGLFSSSSNIGCKTALISM*EPSVSW Trigger: CCAGGAGACGGAAGGCTCCAACATAGAAATGAGTGC...TGTTTTACACCCAATGTTTGAAGAGGAGGAAAACAAACCACAGCCAGTTGTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR CCA 72 bp | CAGATCTTCTTTTTCACCATCAGGCAGTTCATATGTTaGGGCAGAGATTTCTTAGACAATGGCACAGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: QIFFFTIRQFIC*GRDFLDNGTVA Trigger: AGCCACTGTGCCATTGTCTAAGAAATCTCTGCCCCAACATATGAACTGCCTGATGGTGAAAAAGAAGATCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| 3UTR TCA 72 bp | TTGGAGCCTTCCGTCTCCTGGTCATTTTCGCTACTGTaGAGTTTGTTAGTCTTCATAAACTTACTCCACACT | + |
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Preference number: 3 (lower is better) Translates to: LEPSVSWSFSLL*SLLVFINLLHT Trigger: AGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGTAGCGAAAATGACCAGGAGACGGAAGGCTCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR-3UTR CAA 90 bp | TGGATTTCATATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTGTTTTTGCTTGCCCTaGCCCCAGTTCAGATCTTCT | + |
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Preference number: 3 (lower is better) Translates to: WISYHSIYLRDLSAGSHLCFCLP*PQFRSS Trigger: AGAAGATCTGAACTGGGGCAAGGGCAAGCAAAAACA...CAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGAAATCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| 3UTR-3UTR CAA 90 bp | ATTTTCGCTACTGTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTGCTTTTGTGCACTCTGCATTTaGGAAATGTTGGTCTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: IFATVKFVSLHKLTPHCFCALCI*EMLVSL Trigger: CAAGGAGACCAACATTTCCAAAATGCAGAGTGCACA...AAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGTAGCGAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| 3UTR TCA 72 bp | TGTCTTATCCACCTAACAATTTGCCTTCACAAAACCTaGAAGAAACCAGAACACTGCCTTTTGAATAGTTTT | + |
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Preference number: 3 (lower is better) Translates to: CLIHLTICLHKT*KKPEHCLLNSF Trigger: AAAACTATTCAAAAGGCAGTGTTCTGGTTTCTTTCAGGTTTTGTGAAGGCAAATTGTTAGGTGGATAAGACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| CDS-3UTR TCA 90 bp | GTGCAGGATCCCACTTGTCAGGGGATACTGAATTGGGGAAGTCCCTGCTGTTTTTCTTCATCAGTTAGCTaGCCGGAGGCACTCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: VQDPTCQGILNWGSPCCFSSSVS*PEALIS Trigger: AGAAATGAGTGCCTCCGGTCAGCTAACTGATGAAGA...AAAACAGCAGGGACTTCCCCAATTCAGTATCCCCTGACAAGTGGGATCCTGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| CDS-3UTR CCA 90 bp | AGGGACTTGAGTGCAGGATCCCACTTGTCAGGGGATACTGAATTGGGGAAGTCCAGGGTCATCAACAACTaGCTGTGGTTTGTTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RDLSAGSHLSGDTELGKSRVINN*LWFVFL Trigger: GAGGAAAACAAACCACAGCCAGTTGTTGATGACCCT...GGACTTCCCCAATTCAGTATCCCCTGACAAGTGGGATCCTGCACTCAAGTCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR CCA 90 bp | AGTGCAGGATCCCACTTGTCAGGGGATACTGAATTGGGGAAGTCCCTGCTGTTTAGGGTCATCAACAACTaGCTGTGGTTTGTTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SAGSHLSGDTELGKSLLFRVINN*LWFVFL Trigger: GAGGAAAACAAACCACAGCCAGTTGTTGATGACCCT...AAACAGCAGGGACTTCCCCAATTCAGTATCCCCTGACAAGTGGGATCCTGCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR TCA 90 bp | TGCCCTTGCCCCAGTTCAGATCTTCTTTTTCACCATCAGGCAGTTCATATGTTGGTTTTCCTCCTTAGCTaGCCGGAGGCACTCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: CPCPSSDLLFHHQAVHMLVFLLS*PEALIS Trigger: AGAAATGAGTGCCTCCGGTCAGCTAAGGAGGAAAAC...CAACATATGAACTGCCTGATGGTGAAAAAGAAGATCTGAACTGGGGCAAGGGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000225275.2 |
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| CDS-3UTR TCA 90 bp | AGGGACTTGAGTGCAGGATCCCACTTGTCAGGGGATACTGAATTGGGGAAGTCCTCCACACTGCTTTTATaGGAACTTCTTTATCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: RDLSAGSHLSGDTELGKSSTLLL*ELLYPS Trigger: AGAAGGATAAAGAAGTTCTCATAAAAGCAGTGTGGA...GGACTTCCCCAATTCAGTATCCCCTGACAAGTGGGATCCTGCACTCAAGTCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR GCA 90 bp | TGCCCTTGCCCCAGTTCAGATCTTCTTTTTCACCATCAGGCAGTTCATATGTTGAGTTCAGCATCCAACTaGGCTTCAGGGACTATAGCA | + |
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Preference number: 4 (lower is better) Translates to: CPCPSSDLLFHHQAVHMLSSASN*ASGTIA Trigger: TGCTATAGTCCCTGAAGCGCAGTTGGATGCTGAACT...CAACATATGAACTGCCTGATGGTGAAAAAGAAGATCTGAACTGGGGCAAGGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR GCA 90 bp | TATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCAGGGGATACTGAATTGGGGTTATCCTTCTGCTCTTaGAGTTCAGCATCCAACTGC | + |
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Preference number: 4 (lower is better) Translates to: YLRDLSAGSHLSGDTELGLSFCS*SSASNC Trigger: GCAGTTGGATGCTGAACTGCAAGAGCAGAAGGATAA...CCCCAATTCAGTATCCCCTGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR GCA 90 bp | TTGCCCTTGCCCCAGTTCAGATCTTCTTTTTCACCATCAGGCAGTTCATATGTTAGTTCAGCATCCAACTaGGCTTCAGGGACTATAGCA | + |
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Preference number: 4 (lower is better) Translates to: LPLPQFRSSFSPSGSSYVSSASN*ASGTIA Trigger: TGCTATAGTCCCTGAAGCGCAGTTGGATGCTGAACT...AACATATGAACTGCCTGATGGTGAAAAAGAAGATCTGAACTGGGGCAAGGGCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR TCA 90 bp | ACTGTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTGCTTTTATGAGAACTGGACAGTTCCCATGTaGCCAACCAGCCTGCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: TVKFVSLHKLTPHCFYENWTVPM*PTSLPV Trigger: AACTGGCAGGCTGGTTGGTCACATGGGAACTGTCCA...GTTCTCATAAAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS-3UTR GCA 90 bp | GGATCACTGTACACTATAACTAGCCTTTCTGTGCACTCTGCATTTTGGAAATGTGTTACCTTCTGCTCTTaGAGTTCAGCATCCAACTGC | + |
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Preference number: 4 (lower is better) Translates to: GSLYTITSLSVHSAFWKCVTFCS*SSASNC Trigger: GCAGTTGGATGCTGAACTGCAAGAGCAGAAGGTAAC...ACATTTCCAAAATGCAGAGTGCACAGAAAGGCTAGTTATAGTGTACAGTGATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS-3UTR CCA 90 bp | TCATATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCAGGGCACTCATTTCTATGTTaGAGCCTTCCGTCTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SYHSIYLRDLSAGSHLSGHSFLC*SLPSPG Trigger: ACCAGGAGACGGAAGGCTCCAACATAGAAATGAGTG...CCCTGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR GCA 90 bp | TATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCAGGGGATTGCCTAACTTCATACTaGTGTCCATGTTACTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: YHSIYLRDLSAGSHLSGDCLTSY*CPCYCG Trigger: GCCACAGTAACATGGACAGCAGTATGAAGTTAGGCA...ATCCCCTGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225275.2 |
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| 3UTR CAA 72 bp | TCCTCAAATTCAGGGTCATCAACAACTGGCTGTGGTTaGTTTTCCTCCTCTTCAAACATTGGGTGTAAAACA | + |
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Preference number: 4 (lower is better) Translates to: SSNSGSSTTGCG*FSSSSNIGCKT Trigger: TGTTTTACACCCAATGTTTGAAGAGGAGGAAAACAAACCACAGCCAGTTGTTGATGACCCTGAATTTGAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS-3UTR TCA 90 bp | GGATCACTGTACACTATAACTAGCCTTTCTGTGCACTCTGCATTTTGGAAATGTAAGCACTATTCTCCTTaGGATCTCTTTGGACAGTTC | + |
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Preference number: 4 (lower is better) Translates to: GSLYTITSLSVHSAFWKCKHYSP*DLFGQF Trigger: GAACTGTCCAAAGAGATCTCAAGGAGAATAGTGCTT...ACATTTCCAAAATGCAGAGTGCACAGAAAGGCTAGTTATAGTGTACAGTGATCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS-3UTR GCA 90 bp | TATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCAGGGGATACTTCTTTATCCTTCTaGTCTTGCAGTTCAGCATCC | + |
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Preference number: 4 (lower is better) Translates to: YHSIYLRDLSAGSHLSGDTSLSF*SCSSAS Trigger: GGATGCTGAACTGCAAGAGCAGAAGGATAAAGAAGT...ATCCCCTGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR GCA 90 bp | GGATCACTGTACACTATAACTAGCCTTTCTGTGCACTCTGCATTTTGGAAATGTTCATATGTTACCTTCTaGTCTTGCAGTTCAGCATCC | + |
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Preference number: 4 (lower is better) Translates to: GSLYTITSLSVHSAFWKCSYVTF*SCSSAS Trigger: GGATGCTGAACTGCAAGAGCAGAAGGTAACATATGA...ACATTTCCAAAATGCAGAGTGCACAGAAAGGCTAGTTATAGTGTACAGTGATCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS-3UTR CCA 90 bp | TCATATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCAGGGATCAACAACTGGCTGTaGTTTGTTTTCCTCCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: SYHSIYLRDLSAGSHLSGINNWL*FVFLLS Trigger: GCTAAGGAGGAAAACAAACCACAGCCAGTTGTTGAT...CCCTGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225275.2 |
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| CDS-3UTR GCA 90 bp | ATTTTCGCTACTGTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTGCTTTAGTTCAGCATCCAACTaGGCTTCAGGGACTATAGCA | + |
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Preference number: 4 (lower is better) Translates to: IFATVKFVSLHKLTPHCFSSASN*ASGTIA Trigger: TGCTATAGTCCCTGAAGCGCAGTTGGATGCTGAACT...AAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCACAGTAGCGAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS-3UTR CCA 90 bp | ATTTCATATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCACACTCATTTCTATGTTaGAGCCTTCCGTCTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: ISYHSIYLRDLSAGSHLSHSFLC*SLPSPG Trigger: ACCAGGAGACGGAAGGCTCCAACATAGAAATGAGTG...TGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| 3UTR CAA 72 bp | CCTTCACACAGAACTATGTCTTATCCACCTAACAATTaGCCTTCACAAAACCTGAAAGAAACCAGAACACTG | + |
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Preference number: 4 (lower is better) Translates to: PSHRTMSYPPNN*PSQNLKETRTL Trigger: CAGTGTTCTGGTTTCTTTCAGGTTTTGTGAAGGCAAATTGTTAGGTGGATAAGACATAGTTCTGTGTGAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| CDS-3UTR TCA 90 bp | TCATATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCAGGGTCCACACTGCTTTTATaGGAACTTCTTTATCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SYHSIYLRDLSAGSHLSGSTLLL*ELLYPS Trigger: AGAAGGATAAAGAAGTTCTCATAAAAGCAGTGTGGA...CCCTGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR CCA 90 bp | ATTTCATATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCAATCAACAACTGGCTGTaGTTTGTTTTCCTCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ISYHSIYLRDLSAGSHLSINNWL*FVFLLF Trigger: GAAGAGGAGGAAAACAAACCACAGCCAGTTGTTGAT...TGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| 3UTR CAA 72 bp | TTTTGGATTTCATATCATAGTATATATTTAAGGGACTaGAGTGCAGGATCCCACTTGTCAGGGGATACTGAA | + |
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Preference number: 4 (lower is better) Translates to: FWISYHSIYLRD*SAGSHLSGDTE Trigger: TTCAGTATCCCCTGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGAAATCCAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| 3UTR CAA 72 bp | ACAAAACATAATAAAGGATGGAATACTGATTCTATATaGAAACGACCACTCACACTCTTCTCTGAACACCAG | + |
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Preference number: 4 (lower is better) Translates to: TKHNKGWNTDSI*KRPLTLFSEHQ Trigger: CTGGTGTTCAGAGAAGAGTGTGAGTGGTCGTTTCAATATAGAATCAGTATTCCATCCTTTATTATGTTTTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| CDS-3UTR CAA 90 bp | GTGCAGGATCCCACTTGTCAGGGGATACTGAATTGGGGAAGTCCCTGCTGTTTTGCACTCATTTCTATGTaGGAGCCTTCCGTCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: VQDPTCQGILNWGSPCCFALISM*EPSVSW Trigger: CCAGGAGACGGAAGGCTCCAACATAGAAATGAGTGC...AAAACAGCAGGGACTTCCCCAATTCAGTATCCCCTGACAAGTGGGATCCTGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR CAA 90 bp | TGCTTGCCCTTGCCCCAGTTCAGATCTTCTTTTTCACCATCAGGCAGTTCATATACAACTGGCTGTGGTTaGTTTTCCTCCTCTTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: CLPLPQFRSSFSPSGSSYTTGCG*FSSSSN Trigger: GTTTGAAGAGGAGGAAAACAAACCACAGCCAGTTGT...ATATGAACTGCCTGATGGTGAAAAAGAAGATCTGAACTGGGGCAAGGGCAAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021885.8 |
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| CDS-3UTR CAA 90 bp | GGATCACTGTACACTATAACTAGCCTTTCTGTGCACTCTGCATTTTGGAAATGTCTCCTTGAGATCTCTTaGGACAGTTCCCATGTGACC | + |
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Preference number: 5 (lower is better) Translates to: GSLYTITSLSVHSAFWKCLLEIS*DSSHVT Trigger: GGTCACATGGGAACTGTCCAAAGAGATCTCAAGGAG...ACATTTCCAAAATGCAGAGTGCACAGAAAGGCTAGTTATAGTGTACAGTGATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS-3UTR CAA 90 bp | TGGATTTCATATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGGCACTCATTTCTATGTaGGAGCCTTCCGTCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: WISYHSIYLRDLSAGSHLALISM*EPSVSW Trigger: CCAGGAGACGGAAGGCTCCAACATAGAAATGAGTGC...CAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGAAATCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS-3UTR CAA 90 bp | TCATATCATAGTATATATTTAAGGGACTTGAGTGCAGGATCCCACTTGTCAGGGACAACTGGCTGTGGTTaGTTTTCCTCCTTAGCTGAC | + |
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Preference number: 5 (lower is better) Translates to: SYHSIYLRDLSAGSHLSGTTGCG*FSSLAD Trigger: GTCAGCTAAGGAGGAAAACAAACCACAGCCAGTTGT...CCCTGACAAGTGGGATCCTGCACTCAAGTCCCTTAAATATATACTATGATATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225275.2 |
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| CDS-3UTR CAA 90 bp | TACACTATAACTAGCCTTTCTGTGCACTCTGCATTTTGGAAATGTTGGTCTCCTCAAGCACTATTCTCCTaGAGATCTCTTTGGACAGTT | + |
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Preference number: 5 (lower is better) Translates to: YTITSLSVHSAFWKCWSPQALFS*RSLWTV Trigger: AACTGTCCAAAGAGATCTCAAGGAGAATAGTGCTTG...AGGAGACCAACATTTCCAAAATGCAGAGTGCACAGAAAGGCTAGTTATAGTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS GCA 72 bp | TCTTTATCCTTCTGCTCTTGCAGTTCAGCATCCAACTaGGCTTCAGGGACTATAGCAGCTGAGGCCACTCCC | + |
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Preference number: 6 (lower is better) Translates to: SLSFCSCSSASN*ASGTIAAEATP Trigger: GGGAGTGGCCTCAGCTGCTATAGTCCCTGAAGCGCAGTTGGATGCTGAACTGCAAGAGCAGAAGGATAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS GCA 72 bp | TATGTTACCTTCTGCTCTTGCAGTTCAGCATCCAACTaGGCTTCAGGGACTATAGCAGCTGAGGCCACTCCC | + |
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Preference number: 6 (lower is better) Translates to: YVTFCSCSSASN*ASGTIAAEATP Trigger: GGGAGTGGCCTCAGCTGCTATAGTCCCTGAAGCGCAGTTGGATGCTGAACTGCAAGAGCAGAAGGTAACATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS CCA 72 bp | TCCTCCTTAGCTGACCGGAGGCACTCATTTCTATGTTaGAGCCTTCCGTCTCCTGGTCATTTTCGCTACTGT | + |
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Preference number: 6 (lower is better) Translates to: SSLADRRHSFLC*SLPSPGHFRYC Trigger: ACAGTAGCGAAAATGACCAGGAGACGGAAGGCTCCAACATAGAAATGAGTGCCTCCGGTCAGCTAAGGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225275.2 |
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| CDS CAA 72 bp | CAGCCTGCCAGTTTCCTCATATGTTACCTTCTGCTCTaGCAGTTCAGCATCCAACTGCGCTTCAGGGACTAT | + |
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Preference number: 6 (lower is better) Translates to: QPASFLICYLLL*QFSIQLRFRDY Trigger: ATAGTCCCTGAAGCGCAGTTGGATGCTGAACTGCAAGAGCAGAAGGTAACATATGAGGAAACTGGCAGGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS TCA 72 bp | ATCAACAACTGGCTGTGGTTTGTTTTCCTCCTTAGCTaGCCGGAGGCACTCATTTCTATGTTGGAGCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: INNWLWFVFLLS*PEALISMLEPS Trigger: GGAAGGCTCCAACATAGAAATGAGTGCCTCCGGTCAGCTAAGGAGGAAAACAAACCACAGCCAGTTGTTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225275.2 |
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| CDS GCA 72 bp | AGCCTGCCAGTTTCCTCATATGTTACCTTCTGCTCTTaGAGTTCAGCATCCAACTGCGCTTCAGGGACTATA | + |
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Preference number: 6 (lower is better) Translates to: SLPVSSYVTFCS*SSASNCASGTI Trigger: TATAGTCCCTGAAGCGCAGTTGGATGCTGAACTGCAAGAGCAGAAGGTAACATATGAGGAAACTGGCAGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS GCA 72 bp | GATCTCTTTGGACAGTTCCCATGTGACCAACCAGCCTaGCAGTTTCCTCATATGTTACCTTCTGCTCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: DLFGQFPCDQPA*QFPHMLPSALA Trigger: TGCAAGAGCAGAAGGTAACATATGAGGAAACTGGCAGGCTGGTTGGTCACATGGGAACTGTCCAAAGAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS TCA 72 bp | CTATTCTCCTTGAGATCTCTTTGGACAGTTCCCATGTaGCCAACCAGCCTGCCAGTTTCCTCATATGTTACC | + |
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Preference number: 6 (lower is better) Translates to: LFSLRSLWTVPM*PTSLPVSSYVT Trigger: GGTAACATATGAGGAAACTGGCAGGCTGGTTGGTCACATGGGAACTGTCCAAAGAGATCTCAAGGAGAATAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225936.2 |
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| CDS CAA 72 bp | TCCTCAAATTCAGGGTCATCAACAACTGGCTGTGGTTaGTTTTCCTCCTTAGCTGACCGGAGGCACTCATTT | + |
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Preference number: 6 (lower is better) Translates to: SSNSGSSTTGCG*FSSLADRRHSF Trigger: AAATGAGTGCCTCCGGTCAGCTAAGGAGGAAAACAAACCACAGCCAGTTGTTGATGACCCTGAATTTGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225275.2 |
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| CDS GCA 72 bp | ACTGCTTTTATGAGAACTTCTTTATCCTTCTGCTCTTaGAGTTCAGCATCCAACTGCGCTTCAGGGACTATA | + |
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Preference number: 6 (lower is better) Translates to: TAFMRTSLSFCS*SSASNCASGTI Trigger: TATAGTCCCTGAAGCGCAGTTGGATGCTGAACTGCAAGAGCAGAAGGATAAAGAAGTTCTCATAAAAGCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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| CDS GCA 72 bp | GTGAAGTTTGTTAGTCTTCATAAACTTACTCCACACTaGTTTTATGAGAACTTCTTTATCCTTCTGCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: VKFVSLHKLTPH*FYENFFILLLL Trigger: CAAGAGCAGAAGGATAAAGAAGTTCTCATAAAAGCAGTGTGGAGTAAGTTTATGAAGACTAACAAACTTCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021885.8 ENSMUST00000225275.2 |
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