Pregenerated sensors for TOX4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016831Ensembl transcript IDs: ENSMUST00000022766.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGGCCAAGGATGACCTTGAACTCCTGATCTTCCAGCCTGGGGTCTaGACTCAGAGCTTTATAGTGCTAAGCCATAACCCCAGGCCTTCA | + |
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Preference number: 1 (lower is better) Translates to: WAKDDLELLIFQPGV*TQSFIVLSHNPRPS Trigger: TGAAGGCCTGGGGTTATGGCTTAGCACTATAAAGCTCTGAGTTCAGACCCCAGGCTGGAAGATCAGGAGTTCAAGGTCATCCTTGGCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR GCA 90 bp | CCCCTGGCACCCGCAAGATTGAGTTATTTGGACGACCACACAATGTaGAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCT | + |
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Preference number: 1 (lower is better) Translates to: PLAPARLSYLDDHTM*SPTGNIKRTGSCLP Trigger: AGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGTGTGGTCGTCCAAATAACTCAATCTTGCGGGTGCCAGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR GCA 90 bp | ACAGATCCGGCTGGATCTTGGGGCATGAGACTGAAGCAGGAGGATTaGAAGCTTAAGGCCTGCCAATGCTTATTTAGAGGTCTCAAAAGG | + |
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Preference number: 1 (lower is better) Translates to: TDPAGSWGMRLKQED*KLKACQCLFRGLKR Trigger: CCTTTTGAGACCTCTAAATAAGCATTGGCAGGCCTTAAGCTTGCAATCCTCCTGCTTCAGTCTCATGCCCCAAGATCCAGCCGGATCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CCA 90 bp | TGCCTGCATGTATGTCTTTTTGAGGGTGTCATGAGCTGTAGGTCTTaGGAATTGAAGCCAGGTCCTCTGGAAAAACAACCAGTGCTCATA | + |
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Preference number: 1 (lower is better) Translates to: CLHVCLFEGVMSCRS*ELKPGPLEKQPVLI Trigger: TATGAGCACTGGTTGTTTTTCCAGAGGACCTGGCTTCAATTCCCAAGACCTACAGCTCATGACACCCTCAAAAAGACATACATGCAGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR TCA 90 bp | TCTAGGTTCGTTCCACCAGTCATAAACCAGATGAAATATATGGCATaGTTGAGAGACTGTCCCCTGGCACCCGCAAGATTGAGTTATTTG | + |
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Preference number: 1 (lower is better) Translates to: SRFVPPVINQMKYMA*LRDCPLAPARLSYL Trigger: CAAATAACTCAATCTTGCGGGTGCCAGGGGACAGTCTCTCAATCATGCCATATATTTCATCTGGTTTATGACTGGTGGAACGAACCTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCGAGCAGGTGGATTTCTaGGTTCGAGGCCAGCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSEQVDF*VRGQPG Trigger: ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTC...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR CCA 90 bp | GTGAGTTCCAGGTCAGCCGGGGCTATACAAAGAAACCCTGTCTCAAAAACCAAAGGGAGGCAGAGCAGGTaGATTTCTGAGTTCGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: VSSRSAGAIQRNPVSKTKGRQSR*ISEFEA Trigger: GGCCTCGAACTCAGAAATCCACCTGCTCTGCCTCCC...TTTGGTTTTTGAGACAGGGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCAGGGAGATGGAGGCATaGAGGACTATGGGTAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSREMEA*RTMGKG Trigger: ACCTTTACCCATAGTCCTTCATGCCTCCATCTCCCT...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | GCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCTCCTGCCCGTAAAGATCGTTTTGGATaGTGTCGTTTCCCCTCTAGC | + |
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Preference number: 2 (lower is better) Translates to: AQLVTLREQALASLPPARKDRFG*CRFPSS Trigger: GCTAGAGGGGAAACGACATCATCCAAAACGATCTTT...ACGGGCAGGAGGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCAGGCAGGTGGATTTCTaGAGCCAGCCTGGTCTACAA | + |
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Preference number: 2 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTRQVDF*SQPGLQ Trigger: TTGTAGACCAGGCTGGCTTCAGAAATCCACCTGCCT...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR GCA 90 bp | GCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCTCCTGCCCGTATCCAACCTGCCTCTTaGCTCCTAAGTTGTAGGATT | + |
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Preference number: 2 (lower is better) Translates to: AQLVTLREQALASLPPARIQPAS*LLSCRI Trigger: AATCCTACAACTTAGGAGGCAAGAGGCAGGTTGGAT...ACGGGCAGGAGGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR CCA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCTTTAATCCCAGCACTTaGGAGGCAGAGCAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSFNPST*EAEQVD Trigger: ATCCACCTGCTCTGCCTCCCAAGTGCTGGGATTAAA...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR CCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCCCTGATCTTCCAGCCTaGGGTCTGAACTCAGAGCTT | + |
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Preference number: 2 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTPDLPA*GLNSEL Trigger: AAGCTCTGAGTTCAGACCCCAGGCTGGAAGATCAGG...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCAGTGCACTTTACCACTaGGCTGAAACCCTAAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSSALYH*AETLSL Trigger: GAGACTTAGGGTTTCAGCTCAGTGGTAAAGTGCACT...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | GTGAGTTCCAGGTCAGCCGGGGCTATACAAAGAAACCCTGTCTCAAAAACCAAATTCCAGCCTGGGGTCTaGACTCAGAGCTTTATAGTG | + |
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Preference number: 2 (lower is better) Translates to: VSSRSAGAIQRNPVSKTKFQPGV*TQSFIV Trigger: CACTATAAAGCTCTGAGTTCAGACCCCAGGCTGGAA...TTTGGTTTTTGAGACAGGGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR CCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCAGGCATGAAGGACTATaGGTAAAGGTCAGGCACTAC | + |
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Preference number: 2 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTRHEGL*VKVRHY Trigger: GTAGTGCCTGACCTTTACCCATAGTCCTTCATGCCT...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR CCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCCATTCCTCCTTCACTTaGGATTTAAACCCAGTGCAC | + |
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Preference number: 2 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTHSSFT*DLNPVH Trigger: GTGCACTGGGTTTAAATCCCAAGTGAAGGAGGAATG...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CAA 90 bp | GCCGAGAACAAAGCAAAGCACTCGCCCAATGACATTCTAGGCAAGTaGTCTGACCGTTTTACTGGTATGTTTCTTCTAATGACCCCTATG | + |
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Preference number: 2 (lower is better) Translates to: AENKAKHSPNDILGK*SDRFTGMFLLMTPM Trigger: CATAGGGGTCATTAGAAGAAACATACCAGTAAAACGGTCAGACAACTTGCCTAGAATGTCATTGGGCGAGTGCTTTGCTTTGTTCTCGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | GTGAGTTCCAGGTCAGCCGGGGCTATACAAAGAAACCCTGTCTCAAAAACCAAATCTAGGCAAGTTGTCTaGCCGTTTTACTGGTATGTT | + |
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Preference number: 2 (lower is better) Translates to: VSSRSAGAIQRNPVSKTKSRQVV*PFYWYV Trigger: AACATACCAGTAAAACGGTCAGACAACTTGCCTAGA...TTTGGTTTTTGAGACAGGGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR GCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCGTTCTGCTTCTTACATaGAAAACTGGTAACCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTVLLLT*KTGNQV Trigger: GACTTGGTTACCAGTTTTGCATGTAAGAAGCAGAAC...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | GTGAGTTCCAGGTCAGCCGGGGCTATACAAAGAAACCCTGTCTCAAAAACCAAAAATTCTAAATTACAGTaGATTTGCTGGCCCTGCTAC | + |
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Preference number: 2 (lower is better) Translates to: VSSRSAGAIQRNPVSKTKNSKLQ*ICWPCY Trigger: GTAGCAGGGCCAGCAAATTCACTGTAATTTAGAATT...TTTGGTTTTTGAGACAGGGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CAA 90 bp | GTAACCAAGTCAGGTAAAGAAATACTTGTACAGAAAAAGATCGTTTaGGATGATGTCGTTTCCCCTCTAGCCCAATGTGCTAAGACTGAG | + |
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Preference number: 2 (lower is better) Translates to: VTKSGKEILVQKKIV*DDVVSPLAQCAKTE Trigger: CTCAGTCTTAGCACATTGGGCTAGAGGGGAAACGACATCATCCAAAACGATCTTTTTCTGTACAAGTATTTCTTTACCTGACTTGGTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR TCA 90 bp | CCATGCATATGGTACTCTAAACTTTTGCTTATTCTATGTACGTTTGCTGGTTTAACTTTACCACTGAGCTaGAACCCTAAGTCTCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: PCIWYSKLLLILCTFAGLTLPLS*NPKSLF Trigger: GAAGAGAGACTTAGGGTTTCAGCTCAGTGGTAAAGT...TAAACCAGCAAACGTACATAGAATAAGCAAAAGTTTAGAGTACCATATGCATGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR TCA 72 bp | AATCCCAGCACTTGGGAGGCAGAGCAGGTGGATTTCTaGGTTCGAGGCCAGCCTGGTCTACAAAATGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: NPSTWEAEQVDF*VRGQPGLQNEF Trigger: GAACTCATTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTCTGCCTCCCAAGTGCTGGGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR TCA 72 bp | GCAGGTGGATTTCTGAAGCCAGCCTGGTCTACAAAGTaGGTTCCAGGTCAGCCGGGGCTATACAAAGAAACC | + |
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Preference number: 3 (lower is better) Translates to: AGGFLKPAWSTK*VPGQPGLYKET Trigger: GGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCACTTTGTAGACCAGGCTGGCTTCAGAAATCCACCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CCA 72 bp | GACGCACTTCCTTACAAAGCTAAGCGTTCAGAGCCATaGGCTACAGGCCACACCTTAAGAGGACTGTTTACG | + |
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Preference number: 3 (lower is better) Translates to: DALPYKAKRSEP*ATGHTLRGLFT Trigger: CGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCTGAACGCTTAGCTTTGTAAGGAAGTGCGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR TCA 72 bp | GATGACCTTGAACTCCTGATCTTCCAGCCTGGGGTCTaGACTCAGAGCTTTATAGTGCTAAGCCATAACCCC | + |
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Preference number: 3 (lower is better) Translates to: DDLELLIFQPGV*TQSFIVLSHNP Trigger: GGGGTTATGGCTTAGCACTATAAAGCTCTGAGTTCAGACCCCAGGCTGGAAGATCAGGAGTTCAAGGTCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR GCA 72 bp | GCTGGATCTTGGGGCATGAGACTGAAGCAGGAGGATTaGAAGCTTAAGGCCTGCCAATGCTTATTTAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: AGSWGMRLKQED*KLKACQCLFRG Trigger: ACCTCTAAATAAGCATTGGCAGGCCTTAAGCTTGCAATCCTCCTGCTTCAGTCTCATGCCCCAAGATCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR CAA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCAATGACCCCTATGATTaGCTCCCATCACTCTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTNDPYD*LPSLFP Trigger: AGGGAAGAGTGATGGGAGCAAATCATAGGGGTCATT...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR CAA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCGCCCTTACAGGATTTTaGGTTTGCCTCTTCTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTALTGF*VCLFFP Trigger: GGGAAAGAAGAGGCAAACCAAAAATCCTGTAAGGGC...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR-3UTR CAA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCTACAGGATTTTTGGTTaGCCTCTTCTTTCCCCCTTG | + |
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Preference number: 3 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTYRIFG*PLLSPL Trigger: CAAGGGGGAAAGAAGAGGCAAACCAAAAATCCTGTA...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR GCA 72 bp | CCCGCAAGATTGAGTTATTTGGACGACCACACAATGTaGAGCCCAACTGGTAACATTAAGAGAACAGGCTCT | + |
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Preference number: 3 (lower is better) Translates to: PARLSYLDDHTM*SPTGNIKRTGS Trigger: AGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGTGTGGTCGTCCAAATAACTCAATCTTGCGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR TCA 72 bp | GCCTGGTCTACATGGAGAGTTAGTTCCAGGACAGCCTaGGATAGGTATCACCAGAAAGTAGAACATTTTAAG | + |
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Preference number: 3 (lower is better) Translates to: AWSTWRVSSRTA*DRYHQKVEHFK Trigger: CTTAAAATGTTCTACTTTCTGGTGATACCTATCTCAGGCTGTCCTGGAACTAACTCTCCATGTAGACCAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR GCA 72 bp | TTTACTGGTATGTTTCTTCTAATGACCCCTATGATTTaGTCCCATCACTCTTCCCTGTGCTTGCTAGTAAGC | + |
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Preference number: 3 (lower is better) Translates to: FTGMFLLMTPMI*SHHSSLCLLVS Trigger: GCTTACTAGCAAGCACAGGGAAGAGTGATGGGAGCAAATCATAGGGGTCATTAGAAGAAACATACCAGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR TCA 72 bp | TTACAGTTGAGAGTAAAAAGCAATTCTAAATTACAGTaGATTTGCTGGCCCTGCTACATAGTCTGGCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: LQLRVKSNSKLQ*ICWPCYIVWPL Trigger: CAGAGGCCAGACTATGTAGCAGGGCCAGCAAATTCACTGTAATTTAGAATTGCTTTTTACTCTCAACTGTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | CACTTGGGAGGCAGAGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGCAGCTGCAGCTGCCTaGAACACTGACCGGGTGACA | + |
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Preference number: 4 (lower is better) Translates to: HLGGRAGGFLSSRPAWSTAAAAA*NTDRVT Trigger: TGTCACCCGGTCAGTGTTGCAGGCAGCTGCAGCTGC...TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTCTGCCTCCCAAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | CACTTGGGAGGCAGAGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGGCACAATCTTGCTCTaGAGAGGTGGTGGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HLGGRAGGFLSSRPAWSTGTILL*RGGGCC Trigger: GCAGCAGCCACCACCTCTGCAGAGCAAGATTGTGCC...TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTCTGCCTCCCAAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CCA 90 bp | GGACTGGGCATAGTAGAGCACACCTTTAGCCTCAGCACTTGGGAGGCAGAGGCAACTACCACTGTCTTCTaGGCGGGAAGTTGCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: GLGIVEHTFSLSTWEAEATTTVF*AGSCLR Trigger: CCGGAGGCAACTTCCCGCCCAGAAGACAGTGGTAGT...TGCCTCTGCCTCCCAAGTGCTGAGGCTAAAGGTGTGCTCTACTATGCCCAGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | GGACTGGGCATAGTAGAGCACACCTTTAGCCTCAGCACTTGGGAGGCAGAGGCAGTGGAGGCACAATCTTaGTCTGCAGAGGTGGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: GLGIVEHTFSLSTWEAEAVEAQS*SAEVVA Trigger: AGCCACCACCTCTGCAGAGCAAGATTGTGCCTCCAC...TGCCTCTGCCTCCCAAGTGCTGAGGCTAAAGGTGTGCTCTACTATGCCCAGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CCA 90 bp | CACTTGGGAGGCAGAGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGTAGCTGTACTTGTTTaGCCTACCTGGAGCCCACGG | + |
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Preference number: 4 (lower is better) Translates to: HLGGRAGGFLSSRPAWSTVAVLV*PTWSPR Trigger: CCGTGGGCTCCAGGTAGGCCAAACAAGTACAGCTAC...TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTCTGCCTCCCAAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR TCA 90 bp | GGACTGGGCATAGTAGAGCACACCTTTAGCCTCAGCACTTGGGAGGCAGAGGCAGCGTGGAATTCACTATaGTGCAAGGGGGCAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GLGIVEHTFSLSTWEAEAAWNSL*CKGAKQ Trigger: CTGCTTTGCCCCCTTGCATCATAGTGAATTCCACGC...TGCCTCTGCCTCCCAAGTGCTGAGGCTAAAGGTGTGCTCTACTATGCCCAGTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR TCA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCGGTTGCTGCATGGCCTaGAGTGGAGGGGGTTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSGCCMA*SGGGCC Trigger: ACAGCAACCCCCTCCACTTCAGGCCATGCAGCAACC...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR TCA 90 bp | GGACTGGGCATAGTAGAGCACACCTTTAGCCTCAGCACTTGGGAGGCAGAGGCAGCCTGCTGGCTTGGCTaGATAGTAGCTGTACTTGTT | + |
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Preference number: 4 (lower is better) Translates to: GLGIVEHTFSLSTWEAEAACWLG*IVAVLV Trigger: AACAAGTACAGCTACTATTCAGCCAAGCCAGCAGGC...TGCCTCTGCCTCCCAAGTGCTGAGGCTAAAGGTGTGCTCTACTATGCCCAGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCCCTGACAGGAAAGGGTaGGAGGGCCCAGTGATCGTC | + |
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Preference number: 4 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTPDRKG*EGPVIV Trigger: GACGATCACTGGGCCCTCGCACCCTTTCCTGTCAGG...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CAA 72 bp | AGAGACTGTCCCCTGGCACCCGCAAGATTGAGTTATTaGGACGACCACACAATGTGCAGCCCAACTGGTAAC | + |
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Preference number: 4 (lower is better) Translates to: RDCPLAPARLSY*DDHTMCSPTGN Trigger: GTTACCAGTTGGGCTGCACATTGTGTGGTCGTCCAAATAACTCAATCTTGCGGGTGCCAGGGGACAGTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CCA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCCTGGGCCTGCTGGCTTaGCTGAATAGTAGCTGTACT | + |
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Preference number: 4 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSLGLLA*LNSSCT Trigger: AGTACAGCTACTATTCAGCCAAGCCAGCAGGCCCAG...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR TCA 90 bp | TTGCTCCCATCACTCTTCCCTGTGCTTGCTAGTAAGCTGGTAATTTTGCTTACAGAATGTCTCGGCTCCTaGCAGGAAAGGGTGCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: LLPSLFPVLASKLVILLTECLGS*QERVRG Trigger: CCCTCGCACCCTTTCCTGTCAGGAGCCGAGACATTC...TGTAAGCAAAATTACCAGCTTACTAGCAAGCACAGGGAAGAGTGATGGGAGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR TCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCGCAGAGACTGGCTTCTaGGGTTCATTTGGGTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTAETGF*GSFGSF Trigger: GAAAGACCCAAATGAACCTCAGAAGCCAGTCTCTGC...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCATTGAGCTGAAAAGCTaGCATCCTGTGAAGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSIELKS*HPVKRR Trigger: CCTCCTCTTCACAGGATGGCAGCTTTTCAGCTCAAT...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | GTGAGTTCCAGGTCAGCCGGGGCTATACAAAGAAACCCTGTCTCAAAAACCAAACAGGTGGCAAGATGGTaGCACCTCCTAAACTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: VSSRSAGAIQRNPVSKTKQVARW*HLLNSN Trigger: GTTTGAGTTTAGGAGGTGGCACCATCTTGCCACCTG...TTTGGTTTTTGAGACAGGGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCTACCTCCCCAAAGGTTaGGTTTGGGTTTTGTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTYLPKG*VWVLSL Trigger: AAGGGACAAAACCCAAACGCAACCTTTGGGGAGGTA...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CAA 72 bp | CTTTTTGAGGGTGTCATGAGCTGTAGGTCTTGGGAATaGAAGCCAGGTCCTCTGGAAAAACAACCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: LFEGVMSCRSWE*KPGPLEKQPVL Trigger: GAGCACTGGTTGTTTTTCCAGAGGACCTGGCTTCAATTCCCAAGACCTACAGCTCATGACACCCTCAAAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | GTGAGTTCCAGGTCAGCCGGGGCTATACAAAGAAACCCTGTCTCAAAAACCAAACCAAGAATACATCCCTaGAGTGCTTCACCACACACT | + |
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Preference number: 4 (lower is better) Translates to: VSSRSAGAIQRNPVSKTKPRIHP*SASPHT Trigger: AGTGTGTGGTGAAGCACTGCAGGGATGTATTCTTGG...TTTGGTTTTTGAGACAGGGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CCA 90 bp | ACAATGTGCAGCCCAACTGGTAACATTAAGAGAACAGGCTCTTGCCTCCCTACCTATTTTCAGAGTGGGTaGAGGCACAATCTTGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TMCSPTGNIKRTGSCLPTYFQSG*RHNLAL Trigger: CAGAGCAAGATTGTGCCTCCACCCACTCTGAAAATA...GGTAGGGAGGCAAGAGCCTGTTCTCTTAATGTTACCAGTTGGGCTGCACATTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CCA 90 bp | TTTGCCTCTTCTTTCCCCCTTGTTTTAGGATTACTCTTGGAAACCAACTGGATGCCCAAGCTTGGTGTATaGAATGTCTCGGCTCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: FASSFPLVLGLLLETNWMPKLGV*NVSAPD Trigger: GTCAGGAGCCGAGACATTCCATACACCAAGCTTGGG...CATCCAGTTGGTTTCCAAGAGTAATCCTAAAACAAGGGGGAAAGAAGAGGCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CCA 90 bp | GTGAGTTCCAGGTCAGCCGGGGCTATACAAAGAAACCCTGTCTCAAAAACCAAATCAATAGTGGTCAACTaGCTGTGTCCCATTAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: VSSRSAGAIQRNPVSKTKSIVVN*LCPIKP Trigger: TGGCTTAATGGGACACAGCCAGTTGACCACTATTGA...TTTGGTTTTTGAGACAGGGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR GCA 90 bp | GTGAGTTCCAGGTCAGCCGGGGCTATACAAAGAAACCCTGTCTCAAAAACCAAATTCTTGGGAGCCTTTTaGTTTTTCCCTGTTTCCACT | + |
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Preference number: 4 (lower is better) Translates to: VSSRSAGAIQRNPVSKTKFLGAF*FFPVST Trigger: AGTGGAAACAGGGAAAAAGCAAAAGGCTCCCAAGAA...TTTGGTTTTTGAGACAGGGTTTCTTTGTATAGCCCCGGCTGACCTGGAACTCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CCA 90 bp | TTTGCCTCTTCTTTCCCCCTTGTTTTAGGATTACTCTTGGAAACCAACTGGATGTACTTGCTGTTGAGTTaGGGGCTGAGGCATCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: FASSFPLVLGLLLETNWMYLLLS*GLRHLL Trigger: CAACAGATGCCTCAGCCCCCAACTCAACAGCAAGTA...CATCCAGTTGGTTTCCAAGAGTAATCCTAAAACAAGGGGGAAAGAAGAGGCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR TCA 90 bp | CCATGCATATGGTACTCTAAACTTTTGCTTATTCTATGTACGTTTGCTGGTTTATTGGGTTTTGTCCCTTaGTGGCAGCCTGCGTATCTC | + |
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Preference number: 4 (lower is better) Translates to: PCIWYSKLLLILCTFAGLLGFVP*WQPAYL Trigger: GAGATACGCAGGCTGCCATCAAGGGACAAAACCCAA...TAAACCAGCAAACGTACATAGAATAAGCAAAAGTTTAGAGTACCATATGCATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CAA 72 bp | TTTTACTGGTATGTTTCTTCTAATGACCCCTATGATTaGCTCCCATCACTCTTCCCTGTGCTTGCTAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: FYWYVSSNDPYD*LPSLFPVLASK Trigger: CTTACTAGCAAGCACAGGGAAGAGTGATGGGAGCAAATCATAGGGGTCATTAGAAGAAACATACCAGTAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CAA 72 bp | AAAGCAAAGCACTCGCCCAATGACATTCTAGGCAAGTaGTCTGACCGTTTTACTGGTATGTTTCTTCTAATG | + |
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Preference number: 4 (lower is better) Translates to: KAKHSPNDILGK*SDRFTGMFLLM Trigger: CATTAGAAGAAACATACCAGTAAAACGGTCAGACAACTTGCCTAGAATGTCATTGGGCGAGTGCTTTGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| 3UTR CAA 72 bp | TCAGGTAAAGAAATACTTGTACAGAAAAAGATCGTTTaGGATGATGTCGTTTCCCCTCTAGCCCAATGTGCT | + |
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Preference number: 4 (lower is better) Translates to: SGKEILVQKKIV*DDVVSPLAQCA Trigger: AGCACATTGGGCTAGAGGGGAAACGACATCATCCAAAACGATCTTTTTCTGTACAAGTATTTCTTTACCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CCA 90 bp | CCATGCATATGGTACTCTAAACTTTTGCTTATTCTATGTACGTTTGCTGGTTTAGTTTCCACAGTAGCCTaGCATTCCTGGTTGTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: PCIWYSKLLLILCTFAGLVSTVA*HSWLSL Trigger: TAAAGACAACCAGGAATGCCAGGCTACTGTGGAAAC...TAAACCAGCAAACGTACATAGAATAAGCAAAAGTTTAGAGTACCATATGCATGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CAA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCAGTAGCTGTACTTGTTaGGCCTACCTGGAGCCCACG | + |
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Preference number: 5 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSSSCTC*AYLEPT Trigger: CGTGGGCTCCAGGTAGGCCAAACAAGTACAGCTACT...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CAA 90 bp | GGACTGGGCATAGTAGAGCACACCTTTAGCCTCAGCACTTGGGAGGCAGAGGCAAGTAACCATTCCACCTaGGGACATGGTGATAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: GLGIVEHTFSLSTWEAEASNHST*GHGDRR Trigger: TCTTCTATCACCATGTCCCAAGGTGGAATGGTTACT...TGCCTCTGCCTCCCAAGTGCTGAGGCTAAAGGTGTGCTCTACTATGCCCAGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CAA 90 bp | AGAGCCATGGGCTACAGGCCACACCTTAAGAGGACTGTTTACGCAATAGTGTCCAATGGTTACTTGCTGTaGAGTTGGGGGCTGAGGCAT | + |
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Preference number: 5 (lower is better) Translates to: RAMGYRPHLKRTVYAIVSNGYLL*SWGLRH Trigger: ATGCCTCAGCCCCCAACTCAACAGCAAGTAACCATT...GGACACTATTGCGTAAACAGTCCTCTTAAGGTGTGGCCTGTAGCCCATGGCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CAA 90 bp | TTTGCCTCTTCTTTCCCCCTTGTTTTAGGATTACTCTTGGAAACCAACTGGATGGGTGGAGGCACAATCTaGCTCTGCAGAGGTGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: FASSFPLVLGLLLETNWMGGGTI*LCRGGG Trigger: GCCACCACCTCTGCAGAGCAAGATTGTGCCTCCACC...CATCCAGTTGGTTTCCAAGAGTAATCCTAAAACAAGGGGGAAAGAAGAGGCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS TCA 90 bp | CAATCTTCGATACCTCCCCAAAGGTTGCGTTTGGGTTTTGTCCCTTaGTGGCAGCCTGCGTATCTCGAAAGAACAATGCATACGCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: QSSIPPQRLRLGFVP*WQPAYLERTMHTQR Trigger: TCTCTGCGTATGCATTGTTCTTTCGAGATACGCAGGCTGCCATCAAGGGACAAAACCCAAACGCAACCTTTGGGGAGGTATCGAAGATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CAA 90 bp | TTGCTCCCATCACTCTTCCCTGTGCTTGCTAGTAAGCTGGTAATTTTGCTTACATTTGGGTTTTGTCCCTaGATGGCAGCCTGCGTATCT | + |
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Preference number: 5 (lower is better) Translates to: LLPSLFPVLASKLVILLTFGFCP*MAACVS Trigger: AGATACGCAGGCTGCCATCAAGGGACAAAACCCAAA...TGTAAGCAAAATTACCAGCTTACTAGCAAGCACAGGGAAGAGTGATGGGAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CAA 90 bp | TTGCTCCCATCACTCTTCCCTGTGCTTGCTAGTAAGCTGGTAATTTTGCTTACATTACTTGCTGTTGAGTaGGGGGCTGAGGCATCTGTT | + |
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Preference number: 5 (lower is better) Translates to: LLPSLFPVLASKLVILLTLLAVE*GAEASV Trigger: AACAGATGCCTCAGCCCCCAACTCAACAGCAAGTAA...TGTAAGCAAAATTACCAGCTTACTAGCAAGCACAGGGAAGAGTGATGGGAGCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS-3UTR CAA 90 bp | CCATGCATATGGTACTCTAAACTTTTGCTTATTCTATGTACGTTTGCTGGTTTAATACCTCCCCAAAGGTaGCGTTTGGGTTTTGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: PCIWYSKLLLILCTFAGLIPPQR*RLGFVP Trigger: AGGGACAAAACCCAAACGCAACCTTTGGGGAGGTAT...TAAACCAGCAAACGTACATAGAATAAGCAAAAGTTTAGAGTACCATATGCATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS CAA 72 bp | GGCCTGCTGGCTTGGCTGAATAGTAGCTGTACTTGTTaGGCCTACCTGGAGCCCACGGGAGGTAACCACTGT | + |
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Preference number: 6 (lower is better) Translates to: GLLAWLNSSCTC*AYLEPTGGNHC Trigger: ACAGTGGTTACCTCCCGTGGGCTCCAGGTAGGCCAAACAAGTACAGCTACTATTCAGCCAAGCCAGCAGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS CAA 72 bp | GAGGGGGTTGCTGTAGAATGGTTACTTGCTGTTGAGTaGGGGGCTGAGGCATCTGTTGCAACGGAGGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: EGVAVEWLLAVE*GAEASVATEEA Trigger: AGCCTCCTCCGTTGCAACAGATGCCTCAGCCCCCAACTCAACAGCAAGTAACCATTCTACAGCAACCCCCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS TCA 72 bp | ATACCTCCCCAAAGGTTGCGTTTGGGTTTTGTCCCTTaGTGGCAGCCTGCGTATCTCGAAAGAACAATGCAT | + |
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Preference number: 6 (lower is better) Translates to: IPPQRLRLGFVP*WQPAYLERTMH Trigger: ATGCATTGTTCTTTCGAGATACGCAGGCTGCCATCAAGGGACAAAACCCAAACGCAACCTTTGGGGAGGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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| CDS GCA 72 bp | TGTATTTTCAGAGTGGGTGGAGGCACAATCTTGCTCTaGAGAGGTGGTGGCTGCTGCTGTAAGTTGATTCTA | + |
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Preference number: 6 (lower is better) Translates to: CIFRVGGGTILL*RGGGCCCKLIL Trigger: TAGAATCAACTTACAGCAGCAGCCACCACCTCTGCAGAGCAAGATTGTGCCTCCACCCACTCTGAAAATACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022766.8 |
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