RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TOX2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074607

Ensembl transcript IDs: ENSMUST00000099110.10, ENSMUST00000109428.9, ENSMUST00000128999.8, ENSMUST00000148599.2, ENSMUST00000165937.8

Found 302 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTCGCTGGCCGGTCACCCTGCCTGCTGCCATGGCCTCTTTCCTGTaGTCAGCCCTTCCTGCTCGGAGCAGTGCCCTCCGGAGAGCCTCA +
Preference number: 1 (lower is better)
Translates to: SRWPVTLPAAMASFL*SALPARSSALRRAS
Trigger: TGAGGCTCTCCGGAGGGCACTGCTCCGAGCAGGAAGGGCTGACCACAGGAAAGAGGCCATGGCAGCAGGCAGGGTGACCGGCCAGCGAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CCA 90 bp TGCCTCTGCAGAGTCTGGTGGGAGGTCGAGGGAGAGACTCAGCCCTaGGGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCTGCC +
Preference number: 1 (lower is better)
Translates to: CLCRVWWEVEGETQP*GIGVSLLSLAGHPA
Trigger: GGCAGGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCTCCCTCGACCTCCCACCAGACTCTGCAGAGGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CCA 90 bp CCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTaGGCTGGTGGTGGGCGGTGGGCTGCCTCTGCAGAGTCTGGTGGG +
Preference number: 1 (lower is better)
Translates to: PGASRSAGRRFLQVL*AGGGRWAASAESGG
Trigger: CCCACCAGACTCTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 90 bp GGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCTGCCTGCTaGCATGGCCTCTTTCCTGTGGTCAGCCCTTCCTGCTCGGAGCAG +
Preference number: 1 (lower is better)
Translates to: GIGVSLLSLAGHPAC*HGLFPVVSPSCSEQ
Trigger: CTGCTCCGAGCAGGAAGGGCTGACCACAGGAAAGAGGCCATGGCAGCAGGCAGGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 90 bp CAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTaGCTCTGCAGAGTCTGGTGGGAGGTCGAGGGAGAGACTCAGCCC +
Preference number: 1 (lower is better)
Translates to: QKVPAGSLGWWWAVG*LCRVWWEVEGETQP
Trigger: GGGCTGAGTCTCTCCCTCGACCTCCCACCAGACTCTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 90 bp TCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTaGAGGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTGCCTCTGCAG +
Preference number: 1 (lower is better)
Translates to: STATLEQAGQRAEGS*RFFGLVVGGGLPLQ
Trigger: CTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CCA 90 bp AGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTaGTGGTGGGCGGTGGGCTGCCTCTGCAGAGTCTGGTGGGAGGTC +
Preference number: 1 (lower is better)
Translates to: SKQVSGQKVPAGSLG*WWAVGCLCRVWWEV
Trigger: GACCTCCCACCAGACTCTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTaGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTG +
Preference number: 1 (lower is better)
Translates to: AGDCVQAKERGPQLP*SKQVSGQKVPAGSL
Trigger: CAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 90 bp TTACAAAGAGGTCTGAGCGAAGCACTGGGGCACCAGGACAGACATTaGAGGGGCCAGGAGACAGCTGCGAACGACAAGAACCAAACCCAA +
Preference number: 1 (lower is better)
Translates to: LQRGLSEALGHQDRH*RGQETAANDKNQTQ
Trigger: TTGGGTTTGGTTCTTGTCGTTCGCAGCTGTCTCCTGGCCCCTGCAATGTCTGTCCTGGTGCCCCAGTGCTTCGCTCAGACCTCTTTGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109428.9
3UTR CCA 90 bp ACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTaGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCTAAGCAACTT +
Preference number: 1 (lower is better)
Translates to: TERVSASLCTLRAHL*LAQHQGWVSVAKQL
Trigger: AAGTTGCTTAGCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR TCA 90 bp CCACAAAATAATCTTACAGATGTCTTCAGCACAGTTCTAAAACAGTaGACTACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTG +
Preference number: 1 (lower is better)
Translates to: PQNNLTDVFSTVLKQ*TTYTEPTERVSASL
Trigger: CAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTAGTTCACTGTTTTAGAACTGTGCTGAAGACATCTGTAAGATTATTTTGTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR GCA 90 bp GGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGGCCGGTCACCCTGCCTaGTGCCATGGCCTCTTTCCT +
Preference number: 2 (lower is better)
Translates to: GTVCRPRSGVHSYPGASRAGHPA*CHGLFP
Trigger: AGGAAAGAGGCCATGGCAGCAGGCAGGGTGACCGGC...CCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp AAGCACTGGGGCACCAGGACAGACATTGCAGGGGCCAGGAGACAGCTGCGAACGGGCAGCCCGGTGAGTTaGGGCTGGGGCCAGAAGTCC +
Preference number: 2 (lower is better)
Translates to: KHWGTRTDIAGARRQLRTGSPVS*GWGQKS
Trigger: GGACTTCTGGCCCCAGCCCCAACTCACCGGGCTGCC...CGTTCGCAGCTGTCTCCTGGCCCCTGCAATGTCTGTCCTGGTGCCCCAGTGCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp GCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGTTCCTGCAGGTTCTTTaGGCTGGTGGTGGGCGGTGG +
Preference number: 2 (lower is better)
Translates to: AKERGPQLPWSKQVSGQKFLQVL*AGGGRW
Trigger: CCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAA...CTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp AAGCACTGGGGCACCAGGACAGACATTGCAGGGGCCAGGAGACAGCTGCGAACGGAGCACACCTGTGGCTaGCCCAGCATCAGGGGTGGG +
Preference number: 2 (lower is better)
Translates to: KHWGTRTDIAGARRQLRTEHTCG*PSIRGG
Trigger: CCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTC...CGTTCGCAGCTGTCTCCTGGCCCCTGCAATGTCTGTCCTGGTGCCCCAGTGCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCATGGCCTCTTTCCTGTaGTCAGCCCTTCCTGCTCGG +
Preference number: 2 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPMASFL*SALPAR
Trigger: CCGAGCAGGAAGGGCTGACCACAGGAAAGAGGCCAT...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp GAGCACACCTGTGGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCTAAGCAACTCTTTGGGCTGGTGGTaGGCGGTGGGCTGCCTCTGC +
Preference number: 2 (lower is better)
Translates to: EHTCGWPSIRGGCLLLSNSLGWW*AVGCLC
Trigger: GCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGA...GTTGCTTAGCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR GCA 90 bp ATCAGGGGTGGGTGTCTGTTGCTAAGCAACTTCGAAGGGGGCAGCCCGGTGAGTTGGTGGGCGGTGGGCTaGCTCTGCAGAGTCTGGTGG +
Preference number: 2 (lower is better)
Translates to: IRGGCLLLSNFEGGSPVSWWAVG*LCRVWW
Trigger: CCACCAGACTCTGCAGAGGCAGCCCACCGCCCACCA...ACTCACCGGGCTGCCCCCTTCGAAGTTGCTTAGCAACAGACACCCACCCCTGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR GCA 90 bp TGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGGGTCACCCTGCCTGCTaGCATGGCCTCTTTCCTGTG +
Preference number: 2 (lower is better)
Translates to: WSKQVSGQKVPAGSLGWWGHPAC*HGLFPV
Trigger: CACAGGAAAGAGGCCATGGCAGCAGGCAGGGTGACC...CCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR GCA 90 bp CACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTGCCGGTCACCCTGCCTaGTGCCATGGCCTCTTTCCT +
Preference number: 2 (lower is better)
Translates to: HSYPGASRSAGRRFLQVLAGHPA*CHGLFP
Trigger: AGGAAAGAGGCCATGGCAGCAGGCAGGGTGACCGGC...AAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp CACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCTTCCTGCAGGTTCTTTaGGCTGGTGGTGGGCGGTGG +
Preference number: 2 (lower is better)
Translates to: HRTSFSIFVYTESTPVAGFLQVL*AGGGRW
Trigger: CCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAA...GCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp TACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCGGCAGCCCGGTGAGTTaGGGCTGGGGCCAGAAGTCC +
Preference number: 2 (lower is better)
Translates to: YLHRTHRTSFSIFVYTESGSPVS*GWGQKS
Trigger: GGACTTCTGGCCCCAGCCCCAACTCACCGGGCTGCC...GCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp TACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCGGAGAGACTCAGCCCTaGGGCATAGGTGTGTCACTG +
Preference number: 2 (lower is better)
Translates to: YLHRTHRTSFSIFVYTESGETQP*GIGVSL
Trigger: CAGTGACACACCTATGCCCCAGGGCTGAGTCTCTCC...GCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CCA 90 bp TACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCGCCCAGCATCAGGGGTaGGTGTCTGTTGCTAAGCAA +
Preference number: 2 (lower is better)
Translates to: YLHRTHRTSFSIFVYTESAQHQG*VSVAKQ
Trigger: TTGCTTAGCAACAGACACCCACCCCTGATGCTGGGC...GCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CAA 90 bp GAGCACACCTGTGGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCTAAGCAACGGGCAGCCCGGTGAGTaGGGGCTGGGGCCAGAAGTC +
Preference number: 3 (lower is better)
Translates to: EHTCGWPSIRGGCLLLSNGQPGE*GLGPEV
Trigger: GACTTCTGGCCCCAGCCCCAACTCACCGGGCTGCCC...GTTGCTTAGCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 72 bp GTGTCACTGCTCTCGCTGGCCGGTCACCCTGCCTGCTaGCATGGCCTCTTTCCTGTGGTCAGCCCTTCCTGC +
Preference number: 3 (lower is better)
Translates to: VSLLSLAGHPAC*HGLFPVVSPSC
Trigger: GCAGGAAGGGCTGACCACAGGAAAGAGGCCATGGCAGCAGGCAGGGTGACCGGCCAGCGAGAGCAGTGACAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 72 bp GGTGTGTCACTGCTCTCGCTGGCCGGTCACCCTGCCTaGTGCCATGGCCTCTTTCCTGTGGTCAGCCCTTCC +
Preference number: 3 (lower is better)
Translates to: GVSLLSLAGHPA*CHGLFPVVSPS
Trigger: GGAAGGGCTGACCACAGGAAAGAGGCCATGGCAGCAGGCAGGGTGACCGGCCAGCGAGAGCAGTGACACACC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 72 bp ACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTaGAGGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTG +
Preference number: 3 (lower is better)
Translates to: TLEQAGQRAEGS*RFFGLVVGGGL
Trigger: CAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CCA 72 bp GGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTaGGCGGTGGGCTGCCTCTGCAGAGTCTGGTGGGAG +
Preference number: 3 (lower is better)
Translates to: GQKVPAGSLGWW*AVGCLCRVWWE
Trigger: CTCCCACCAGACTCTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CCA 72 bp AGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTaGTGGGCGGTGGGCTGCCTCTGCAGAGTCTGGTGG +
Preference number: 3 (lower is better)
Translates to: SGQKVPAGSLGW*WAVGCLCRVWW
Trigger: CCACCAGACTCTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CCA 72 bp TGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTaGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCA +
Preference number: 3 (lower is better)
Translates to: CVQAKERGPQLP*SKQVSGQKVPA
Trigger: TGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR-3UTR CAA 90 bp ACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCCCAGCAGGGCAGCCCGGTGAGTaGGGGCTGGGGCCAGAAGTC +
Preference number: 3 (lower is better)
Translates to: TSFSIFVYTESTPVAGPAGQPGE*GLGPEV
Trigger: GACTTCTGGCCCCAGCCCCAACTCACCGGGCTGCCC...TGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 72 bp GCACCAGGACAGACATTGCAGGGGCCAGGAGACAGCTaGGAACGACAAGAACCAAACCCAAACCCCGACCAC +
Preference number: 3 (lower is better)
Translates to: APGQTLQGPGDS*ERQEPNPNPDH
Trigger: GTGGTCGGGGTTTGGGTTTGGTTCTTGTCGTTCGCAGCTGTCTCCTGGCCCCTGCAATGTCTGTCCTGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109428.9
3UTR CCA 72 bp GTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTaGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCT +
Preference number: 3 (lower is better)
Translates to: VSASLCTLRAHL*LAQHQGWVSVA
Trigger: AGCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR TCA 72 bp AACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTaGGAGCACACCTGTGGCTGGCCCAGCATCAGGGGT +
Preference number: 3 (lower is better)
Translates to: NPQNEFQHLCVH*EHTCGWPSIRG
Trigger: ACCCCTGATGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR GCA 72 bp GAAGAAGAGGAGGAGGAGGAAGAAGAGGAAGAAGAATaGCCCTGGGTGTGGCTTAAAAGTTCCCATTTTCTC +
Preference number: 3 (lower is better)
Translates to: EEEEEEEEEEEE*PWVWLKSSHFL
Trigger: GAGAAAATGGGAACTTTTAAGCCACACCCAGGGGCATTCTTCTTCCTCTTCTTCCTCCTCCTCCTCTTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109428.9
3UTR TCA 72 bp AATCTTACAGATGTCTTCAGCACAGTTCTAAAACAGTaGACTACTTACACAGAACCCACAGAACGAGTTTCA +
Preference number: 3 (lower is better)
Translates to: NLTDVFSTVLKQ*TTYTEPTERVS
Trigger: TGAAACTCGTTCTGTGGGTTCTGTGTAAGTAGTTCACTGTTTTAGAACTGTGCTGAAGACATCTGTAAGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGCCACTGCGGAAGGCCTaGAGGTCGGAGGGCGTCAGG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWPLRKA*RSEGVR
Trigger: CCTGACGCCCTCCGACCTGCAGGCCTTCCGCAGTGG...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGCGGGAGAGGCTCCACTaGGGAAGGCCTGCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWRERLH*GRPAGR
Trigger: CCGACCTGCAGGCCTTCCGCAGTGGAGCCTCTCCCG...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGGAGCAGGCTGCAGGTaGCGAGGCCACGCTCCCCAC +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGGAGCR*RGHAPH
Trigger: GTGGGGAGCGTGGCCTCGGCACCTGCAGCCTGCTCC...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACCCTGGGGAGCAGGCTaGAGGTGCCGAGGCCACGCT +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGPWGAG*RCRGHA
Trigger: AGCGTGGCCTCGGCACCTGCAGCCTGCTCCCCAGGG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGGGCACTCATGTGGCTaGCCAGCATCGCCGGGCGGC +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGGHSCG*PASPGG
Trigger: GCCGCCCGGCGATGCTGGCCAGCCACATGAGTGCCC...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GCCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGGGGCACTCATGTGGCTaGCCAGCATCGCCGGGCGGC +
Preference number: 4 (lower is better)
Translates to: ARSPDAGDCVQAKERGPQGHSCG*PASPGG
Trigger: GCCGCCCGGCGATGCTGGCCAGCCACATGAGTGCCC...CTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGTGGAGCCCAGCGTCCTaGCAAGGCTGGCGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWWSPAS*QGWRER
Trigger: CCTCTCCCGCCAGCCTTGCCAGGACGCTGGGCTCCA...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCGTGGGCAGCTGGCCTaGCAGCAGATGGCCGTCCTG +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKRGQLA*QQMAVL
Trigger: CAGGACGGCCATCTGCTGTCAGGCCAGCTGCCCACG...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCCCACTGCGGAAGGCCTaGAGGTCGGAGGGCGTCAGG +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPPLRKA*RSEGVR
Trigger: CCTGACGCCCTCCGACCTGCAGGCCTTCCGCAGTGG...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACCACTGCGGAAGGCCTaGAGGTCGGAGGGCGTCAGG +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGPLRKA*RSEGVR
Trigger: CCTGACGCCCTCCGACCTGCAGGCCTTCCGCAGTGG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp CAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCCGGGAGAGGCTCCACTaGGGAAGGCCTGCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: QGTVCRPRSGVHSYPGASRERLH*GRPAGR
Trigger: CCGACCTGCAGGCCTTCCGCAGTGGAGCCTCTCCCG...GCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTGCCTCTGCAGGGGCACTCATGTGGCTaGCCAGCATCGCCGGGCGGC +
Preference number: 4 (lower is better)
Translates to: EGSCRFFGLVVGGGLPLQGHSCG*PASPGG
Trigger: GCCGCCCGGCGATGCTGGCCAGCCACATGAGTGCCC...CTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGTGGAGCCCAGCGTCCTaGCAAGGCTGGCGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKWSPAS*QGWRER
Trigger: CCTCTCCCGCCAGCCTTGCCAGGACGCTGGGCTCCA...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTTGGAGCCCAGCGTCCTaGCAAGGCTGGCGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: VQTQGTVCRPRSGVHSYPWSPAS*QGWRER
Trigger: CCTCTCCCGCCAGCCTTGCCAGGACGCTGGGCTCCA...AGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCCCGGCAGCAGGGCCTTaGAGCCCAGCGTCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: QGTVCRPRSGVHSYPGASPAAGP*SPASWQ
Trigger: TTGCCAGGACGCTGGGCTCCAAGGCCCTGCTGCCGG...GCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCGTGGGCAGCTGGCCTaGCAGCAGATGGCCGTCCTG +
Preference number: 4 (lower is better)
Translates to: EVQTQGTVCRPRSGVHSYRGQLA*QQMAVL
Trigger: CAGGACGGCCATCTGCTGTCAGGCCAGCTGCCCACG...GTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTCGTGGGCAGCTGGCCTaGCAGCAGATGGCCGTCCTG +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTARGQLA*QQMAVL
Trigger: CAGGACGGCCATCTGCTGTCAGGCCAGCTGCCCACG...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CACTGCTCTCGCTGGCCGGTCACCCTGCCTGCTGCCATGGCCTCTTTCCTGTGGGTTGGATGGGCCAGGTaGGCGGGAGCCAGAGCCACT +
Preference number: 4 (lower is better)
Translates to: HCSRWPVTLPAAMASFLWVGWAR*AGARAT
Trigger: AGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAAC...CCACAGGAAAGAGGCCATGGCAGCAGGCAGGGTGACCGGCCAGCGAGAGCAGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp GGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGGTTGGATGGGCCAGGTaGGCGGGAGCCAGAGCCACT +
Preference number: 4 (lower is better)
Translates to: GTVCRPRSGVHSYPGASRVGWAR*AGARAT
Trigger: AGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAAC...CCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp AGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGGTTGGATGGGCCAGGTaGGCGGGAGCCAGAGCCACT +
Preference number: 4 (lower is better)
Translates to: RRRGLCAGQGAGSTATLEVGWAR*AGARAT
Trigger: AGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAAC...CTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp CAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTCCACTGCGGAAGGCCTaGAGGTCGGAGGGCGTCAGG +
Preference number: 4 (lower is better)
Translates to: QGAGSTATLEQAGQRAEGPLRKA*RSEGVR
Trigger: CCTGACGCCCTCCGACCTGCAGGCCTTCCGCAGTGG...ACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCACGGGAGAGGCTCCACTaGGGAAGGCCTGCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: RGLCAGQGAGSTATLEQARERLH*GRPAGR
Trigger: CCGACCTGCAGGCCTTCCGCAGTGGAGCCTCTCCCG...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGTGGTGGGCGGTGGGCTaGCTCTGCAGAGTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKWWAVG*LCRVCR
Trigger: CCTGCAGACTCTGCAGAGGCAGCCCACCGCCCACCA...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CACTGCTCTCGCTGGCCGGTCACCCTGCCTGCTGCCATGGCCTCTTTCCTGTGGCTGAGGGCACTCATGTaGCTGGCCAGCATCGCCGGG +
Preference number: 4 (lower is better)
Translates to: HCSRWPVTLPAAMASFLWLRALM*LASIAG
Trigger: CCCGGCGATGCTGGCCAGCCACATGAGTGCCCTCAG...CCACAGGAAAGAGGCCATGGCAGCAGGCAGGGTGACCGGCCAGCGAGAGCAGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp GTCGAGGGAGAGACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCTGGAGCCCAGCGTCCTaGCAAGGCTGGCGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: VEGETQPWGIGVSLLSLAWSPAS*QGWRER
Trigger: CCTCTCCCGCCAGCCTTGCCAGGACGCTGGGCTCCA...GGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCTCCCTCGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCACCGGCAGCAGGGCCTTaGAGCCCAGCGTCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: RGLCAGQGAGSTATLEQAPAAGP*SPASWQ
Trigger: TTGCCAGGACGCTGGGCTCCAAGGCCCTGCTGCCGG...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTGCCTCTGCAGCCGGCAGCAGGGCCTTaGAGCCCAGCGTCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: EGSCRFFGLVVGGGLPLQPAAGP*SPASWQ
Trigger: TTGCCAGGACGCTGGGCTCCAAGGCCCTGCTGCCGG...CTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACGCTGCTGGAAGGGTTaGATGGGCCAGGTGAGCGGG +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGRCWKG*MGQVSG
Trigger: CCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCCGCTGCTGGAAGGGTTaGATGGGCCAGGTGAGCGGG +
Preference number: 4 (lower is better)
Translates to: PEVQTQGTVCRPRSGVHSRCWKG*MGQVSG
Trigger: CCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCG...GCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGCCCAGTCTCCGCTGCTaGAAGGGTTGGATGGGCCAG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWPSLRC*KGWMGQ
Trigger: CTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGG...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTCTTTGGGCTGGTGGTaGGCGGTGGGCTGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPSLGWW*AVGCLC
Trigger: GCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGA...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GCCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCAGCTGCTGGTGCAGTaGGGGGCTGAGAGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: ARSPDAGDCVQAKERGPQQLLVQ*GAEREG
Trigger: TCCTTCCCTCTCAGCCCCTCACTGCACCAGCAGCTG...CTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGCTGCTGGTGCAGTaGGGGGCTGAGAGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKQLLVQ*GAEREG
Trigger: TCCTTCCCTCTCAGCCCCTCACTGCACCAGCAGCTG...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGAGGGGGTCGCTGACTTaGTCCCTGGAGGTGATGGGG +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKRGSLT*SLEVMG
Trigger: CCCCATCACCTCCAGGGAGCAAGTCAGCGACCCCCT...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp TACACTGAGAGCACACCTGTGGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCGGAGCAGGCTGCAGGTaGCGAGGCCACGCTCCCCAC +
Preference number: 4 (lower is better)
Translates to: YTESTPVAGPASGVGVCCGAGCR*RGHAPH
Trigger: GTGGGGAGCGTGGCCTCGGCACCTGCAGCCTGCTCC...GCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGGAGCAGACCGTTaGGCGCAAGGCCGTGACACA +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKQGADR*AQGRDT
Trigger: TGTGTCACGGCCTTGCGCCCAACGGTCTGCTCCCTG...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAGATGGCCGTCCTaGGCCAGCATGTTGGACACC +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWSRWPS*ASMLDT
Trigger: GGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCT...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGTGGCCTGACAGCAGATaGCCGTCCTGGGCCAGCATG +
Preference number: 4 (lower is better)
Translates to: RRRGLCAGQGAGSTATLEWPDSR*PSWASM
Trigger: CATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCA...CTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGCCTGACAGCAGATaGCCGTCCTGGGCCAGCATG +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPWPDSR*PSWASM
Trigger: CATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCA...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGTGGATCGTGGGCAGCTaGCCTGACAGCAGATGGCCG +
Preference number: 4 (lower is better)
Translates to: RRRGLCAGQGAGSTATLEWIVGS*PDSRWP
Trigger: CGGCCATCTGCTGTCAGGCCAGCTGCCCACGATCCA...CTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTGGATCGTGGGCAGCTaGCCTGACAGCAGATGGCCG +
Preference number: 4 (lower is better)
Translates to: GTVCRPRSGVHSYPGASRWIVGS*PDSRWP
Trigger: CGGCCATCTGCTGTCAGGCCAGCTGCCCACGATCCA...CCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GTCGAGGGAGAGACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCCTGAGGGCACTCATGTaGCTGGCCAGCATCGCCGGG +
Preference number: 4 (lower is better)
Translates to: VEGETQPWGIGVSLLSLALRALM*LASIAG
Trigger: CCCGGCGATGCTGGCCAGCCACATGAGTGCCCTCAG...GGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCTCCCTCGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTCTGAGGGCACTCATGTaGCTGGCCAGCATCGCCGGG +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTALRALM*LASIAG
Trigger: CCCGGCGATGCTGGCCAGCCACATGAGTGCCCTCAG...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAAAGCCAGGCCGGGCATaGCGTACATGGGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGKPGRA*RTWAAW
Trigger: CCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTT...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGGGCAGTGGCAGCTGCTaGTGCAGTGAGGGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKGSGSC*CSEGLR
Trigger: TCTCAGCCCCTCACTGCACCAGCAGCTGCCACTGCC...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCGGCAGTGGCAGCTGCTaGTGCAGTGAGGGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: PEVQTQGTVCRPRSGVHSGSGSC*CSEGLR
Trigger: TCTCAGCCCCTCACTGCACCAGCAGCTGCCACTGCC...GCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCACGCTGCTGGAAGGGTTaGATGGGCCAGGTGAGCGGG +
Preference number: 4 (lower is better)
Translates to: RGLCAGQGAGSTATLEQARCWKG*MGQVSG
Trigger: CCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCG...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCCCAGTCTCCGCTGCTaGAAGGGTTGGATGGGCCAG +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKPSLRC*KGWMGQ
Trigger: CTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGG...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCGGCCACGCTCCCCACTaGGGTAACTCCCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: QGTVCRPRSGVHSYPGASGHAPH*GNSHPS
Trigger: ACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCC...GCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCGGCCACGCTCCCCACTaGGGTAACTCCCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPGHAPH*GNSHPS
Trigger: ACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCC...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACTCTTTGGGCTGGTGGTaGGCGGTGGGCTGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: EVQTQGTVCRPRSGVHSYSLGWW*AVGCLC
Trigger: GCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGA...GTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp AGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGGGTGATGGGGAGCCGTaGGCAATGCCACTCCGGATA +
Preference number: 4 (lower is better)
Translates to: RRRGLCAGQGAGSTATLEGDGEP*AMPLRI
Trigger: TATCCGGAGTGGCATTGCTCACGGCTCCCCATCACC...CTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACTTGCTCCCTGGAGGTaGTGGGGAGCCGTGAGCAAT +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGLAPWR*WGAVSN
Trigger: ATTGCTCACGGCTCCCCATCACCTCCAGGGAGCAAG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp GAGCACACCTGTGGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCTAAGCAACGTAGTAGTCCAGGTGTaGCAGGCCGGCCGGCTCGGC +
Preference number: 4 (lower is better)
Translates to: EHTCGWPSIRGGCLLLSNVVVQV*QAGRLG
Trigger: GCCGAGCCGGCCGGCCTGGCACACCTGGACTACTAC...GTTGCTTAGCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTAGGGGGTCGCTGACTTaGTCCCTGGAGGTGATGGGG +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTARGSLT*SLEVMG
Trigger: CCCCATCACCTCCAGGGAGCAAGTCAGCGACCCCCT...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp AGAGACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCAGTGGCAGCTGCTGGTaGAGTGAGGGGCTGAGAGGG +
Preference number: 4 (lower is better)
Translates to: RDSALGHRCVTALAGRSPSGSCW*SEGLRG
Trigger: CCCTCTCAGCCCCTCACTGCACCAGCAGCTGCCACT...GGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp GAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACAGTGGCAGCTGCTGGTaGAGTGAGGGGCTGAGAGGG +
Preference number: 4 (lower is better)
Translates to: EVQTQGTVCRPRSGVHSYSGSCW*SEGLRG
Trigger: CCCTCTCAGCCCCTCACTGCACCAGCAGCTGCCACT...GTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp AAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCAGTGGCAGCTGCTGGTaGAGTGAGGGGCTGAGAGGG +
Preference number: 4 (lower is better)
Translates to: KSRRRGLCAGQGAGSTATSGSCW*SEGLRG
Trigger: CCCTCTCAGCCCCTCACTGCACCAGCAGCTGCCACT...GGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp GCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGCATCCCAGTCTCCGCTaGTGGAAGGGTTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: AKERGPQLPWSKQVSGQKHPSLR*WKGWMG
Trigger: GCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATG...CTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp GGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGCATCCCAGTCTCCGCTaGTGGAAGGGTTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: GDCVQAKERGPQLPWSKQHPSLR*WKGWMG
Trigger: GCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATG...CTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCATCCCAGTCTCCGCTaGTGGAAGGGTTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKHPSLR*WKGWMG
Trigger: GCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATG...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp CCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCGCGAGAGAACGCGCCTaGGACAGCCTCTGTGAGATG +
Preference number: 4 (lower is better)
Translates to: PEVQTQGTVCRPRSGVHSARERA*DSLCEM
Trigger: CATCTCACAGAGGCTGTCGCAGGCGCGTTCTCTCGC...GCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp AGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTATGGTGGGCGGTGGGCTaGCTCTGCAGAGTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: RSPDAGDCVQAKERGPQLWWAVG*LCRVCR
Trigger: CCTGCAGACTCTGCAGAGGCAGCCCACCGCCCACCA...TAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGCGGGCAGAAGGTTCCTaGAGGTTCTTTGGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWRAEGS*RFFGLV
Trigger: CACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCG...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGCAGGGAGCAGACCGTTaGGCGCAAGGCCGTGACACA +
Preference number: 4 (lower is better)
Translates to: GSTATLEQAGQRAEGSCRQGADR*AQGRDT
Trigger: TGTGTCACGGCCTTGCGCCCAACGGTCTGCTCCCTG...CCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTGGCCTGACAGCAGATaGCCGTCCTGGGCCAGCATG +
Preference number: 4 (lower is better)
Translates to: QGAGSTATLEQAGQRAEGWPDSR*PSWASM
Trigger: CATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCA...ACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp GTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTCCTCCTGTGTGGAACTaGATGGAGAGGGGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: VQTQGTVCRPRSGVHSYPPPVWN*MERGSL
Trigger: CAGCGACCCCCTCTCCATCCAGTTCCACACAGGAGG...AGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACCTCCTGTGTGGAACTaGATGGAGAGGGGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGPPVWN*MERGSL
Trigger: CAGCGACCCCCTCTCCATCCAGTTCCACACAGGAGG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGTTGCCTGAGTGTTCTTaGCCTCACCTTGGTCCGGGG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWLPECS*PHLGPG
Trigger: CCCCGGACCAAGGTGAGGCCAAGAACACTCAGGCAA...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCCGGGCATGGCGTACATaGGCTGCTTGGGTGGAAGCA +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPRAWRT*AAWVEA
Trigger: TGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCG...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAAAGCCAGGCCGGGCATaGCGTACATGGGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: RGLCAGQGAGSTATLEQAKPGRA*RTWAAW
Trigger: CCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTT...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTGCCTCTGCAGGGCAGTGGCAGCTGCTaGTGCAGTGAGGGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: EGSCRFFGLVVGGGLPLQGSGSC*CSEGLR
Trigger: TCTCAGCCCCTCACTGCACCAGCAGCTGCCACTGCC...CTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp GAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTGCCTCTGCAGGGCCACGCTCCCCACTaGGGTAACTCCCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: EGSCRFFGLVVGGGLPLQGHAPH*GNSHPS
Trigger: ACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCC...CTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTCTCTTGGTCCTCTATTaGCTGGAGGCCCGGCACCCC +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTALLVLY*LEARHP
Trigger: GGGGTGCCGGGCCTCCAGCCAATAGAGGACCAAGAG...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS-3UTR CCA 90 bp GTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTTTCCTGCAGGTTCTTTaGGCTGGTGGTGGGCGGTGG +
Preference number: 4 (lower is better)
Translates to: VQTQGTVCRPRSGVHSYPFLQVL*AGGGRW
Trigger: CCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAA...AGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp TCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGTTCCTGCAGGTTCTTTaGGCTGGTGGTGGGCGGTGG +
Preference number: 4 (lower is better)
Translates to: SRRRGLCAGQGAGSTATLFLQVL*AGGGRW
Trigger: CCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAA...CAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp TCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGATCTGGGAGATGAGCTaGGACTGGCTGAGGGCACTC +
Preference number: 4 (lower is better)
Translates to: SRRRGLCAGQGAGSTATLIWEMS*DWLRAL
Trigger: GAGTGCCCTCAGCCAGTCTCAGCTCATCTCCCAGAT...CAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp AAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTTGCTCCCTGGAGGTaGTGGGGAGCCGTGAGCAAT +
Preference number: 4 (lower is better)
Translates to: KSRRRGLCAGQGAGSTATLAPWR*WGAVSN
Trigger: ATTGCTCACGGCTCCCCATCACCTCCAGGGAGCAAG...GGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCTTGCTCCCTGGAGGTaGTGGGGAGCCGTGAGCAAT +
Preference number: 4 (lower is better)
Translates to: EVQTQGTVCRPRSGVHSYLAPWR*WGAVSN
Trigger: ATTGCTCACGGCTCCCCATCACCTCCAGGGAGCAAG...GTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGATTTGCCTGGGTCCACTaGGGGTCTCTTCTCTCCCGA +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGFAWVH*GSLLSR
Trigger: TCGGGAGAGAAGAGACCCTCAGTGGACCCAGGCAAA...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGCCTGAGTGTCTCTaGAGAAGAGAGCGTAGGCCG +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKQPECL*RRERRP
Trigger: CGGCCTACGCTCTCTTCTTCAGAGACACTCAGGCTG...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGCAGCCTGAGTGTCTCTaGAGAAGAGAGCGTAGGCCG +
Preference number: 4 (lower is better)
Translates to: AKERGPQLPWSKQVSGQKQPECL*RRERRP
Trigger: CGGCCTACGCTCTCTTCTTCAGAGACACTCAGGCTG...CTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp CAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCCAGCCTGAGTGTCTCTaGAGAAGAGAGCGTAGGCCG +
Preference number: 4 (lower is better)
Translates to: QGTVCRPRSGVHSYPGASQPECL*RRERRP
Trigger: CGGCCTACGCTCTCTTCTTCAGAGACACTCAGGCTG...GCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGATGGGATTCTGCCCCTTaGTGGCAGCCTGAGTGTCTC +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGWDSAP*WQPECL
Trigger: GAGACACTCAGGCTGCCATCAAGGGGCAGAATCCCA...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp AGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGGCTGGTGGGTTTGCCTaGGTGTTCTTGGCCTCACCT +
Preference number: 4 (lower is better)
Translates to: RRRGLCAGQGAGSTATLEAGGFA*VFLASP
Trigger: AGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGC...CTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGTTGGATGGGCCAGGTaGGCGGGAGCCAGAGCCACT +
Preference number: 4 (lower is better)
Translates to: EQAGQRAEGSCRFFGLVVVGWAR*AGARAT
Trigger: AGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAAC...CACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp ATCAGGGGTGGGTGTCTGTTGCTAAGCAACTTCGAAGGGGGCAGCCCGGTGAGTCGGGAGAGGCTCCACTaGGGAAGGCCTGCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: IRGGCLLLSNFEGGSPVSRERLH*GRPAGR
Trigger: CCGACCTGCAGGCCTTCCGCAGTGGAGCCTCTCCCG...ACTCACCGGGCTGCCCCCTTCGAAGTTGCTTAGCAACAGACACCCACCCCTGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACGGGCAGAAGGTTCCTaGAGGTTCTTTGGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGRAEGS*RFFGLV
Trigger: CACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTAGCAGATGGCCGTCCTaGGCCAGCATGTTGGACACC +
Preference number: 4 (lower is better)
Translates to: QGAGSTATLEQAGQRAEGSRWPS*ASMLDT
Trigger: GGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCT...ACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp AGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTATGGATCGTGGGCAGCTaGCCTGACAGCAGATGGCCG +
Preference number: 4 (lower is better)
Translates to: RSPDAGDCVQAKERGPQLWIVGS*PDSRWP
Trigger: CGGCCATCTGCTGTCAGGCCAGCTGCCCACGATCCA...TAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGAGACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCCCTCCTGTGTGGAACTaGATGGAGAGGGGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: RDSALGHRCVTALAGRSPPPVWN*MERGSL
Trigger: CAGCGACCCCCTCTCCATCCAGTTCCACACAGGAGG...GGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp ACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCTGCCTTGCCTGAGTGTTCTTaGCCTCACCTTGGTCCGGGG +
Preference number: 4 (lower is better)
Translates to: TQPWGIGVSLLSLAGHPALPECS*PHLGPG
Trigger: CCCCGGACCAAGGTGAGGCCAAGAACACTCAGGCAA...GGCAGGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCACGGGCATGGCGTACATaGGCTGCTTGGGTGGAAGCA +
Preference number: 4 (lower is better)
Translates to: RGLCAGQGAGSTATLEQARAWRT*AAWVEA
Trigger: TGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCG...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTCGGGCATGGCGTACATaGGCTGCTTGGGTGGAAGCA +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTARAWRT*AAWVEA
Trigger: TGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCG...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGAGCGATTTATCCCTaGGGAGCAGGCTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: QGTVCRPRSGVHSYPGASRAIYP*GAGCRC
Trigger: GCACCTGCAGCCTGCTCCCCAGGGATAAATCGCTCT...GCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGGCATGTTGGACACCATaGTGGCAGGGAGATCCATTG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWACWTP*WQGDPL
Trigger: CAATGGATCTCCCTGCCATCATGGTGTCCAACATGC...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTTTGCCTGGGTCCACTaGGGGTCTCTTCTCTCCCGA +
Preference number: 4 (lower is better)
Translates to: QGAGSTATLEQAGQRAEGFAWVH*GSLLSR
Trigger: TCGGGAGAGAAGAGACCCTCAGTGGACCCAGGCAAA...ACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTTTTGCCTGGGTCCACTaGGGGTCTCTTCTCTCCCGA +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTAFAWVH*GSLLSR
Trigger: TCGGGAGAGAAGAGACCCTCAGTGGACCCAGGCAAA...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp AAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCTGGGATTCTGCCCCTTaGTGGCAGCCTGAGTGTCTC +
Preference number: 4 (lower is better)
Translates to: KSRRRGLCAGQGAGSTATWDSAP*WQPECL
Trigger: GAGACACTCAGGCTGCCATCAAGGGGCAGAATCCCA...GGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTCAGCTGCTGGTGCAGTaGGGGGCTGAGAGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: PGASRSAGRRFLQVLWAGQLLVQ*GAEREG
Trigger: TCCTTCCCTCTCAGCCCCTCACTGCACCAGCAGCTG...ACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp TGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGAGTGGCAGCTGCTGGTaGAGTGAGGGGCTGAGAGGG +
Preference number: 4 (lower is better)
Translates to: WSKQVSGQKVPAGSLGWWSGSCW*SEGLRG
Trigger: CCCTCTCAGCCCCTCACTGCACCAGCAGCTGCCACT...CCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp CAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCCTGCAGAGACGCACCTaGAATGCACCAGTGTCTCGT +
Preference number: 4 (lower is better)
Translates to: QGTVCRPRSGVHSYPGASLQRRT*NAPVSR
Trigger: ACGAGACACTGGTGCATTGCAGGTGCGTCTCTGCAG...GCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp TCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGCTGCAGAGACGCACCTaGAATGCACCAGTGTCTCGT +
Preference number: 4 (lower is better)
Translates to: SRRRGLCAGQGAGSTATLLQRRT*NAPVSR
Trigger: ACGAGACACTGGTGCATTGCAGGTGCGTCTCTGCAG...CAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGCAGGGAGCAGACCGTTaGGCGCAAGGCCGTGACACA +
Preference number: 4 (lower is better)
Translates to: EQAGQRAEGSCRFFGLVVQGADR*AQGRDT
Trigger: TGTGTCACGGCCTTGCGCCCAACGGTCTGCTCCCTG...CACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp GCCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGATTCCTCCTCCTGTGTaGAACTGGATGGAGAGGGGG +
Preference number: 4 (lower is better)
Translates to: ARSPDAGDCVQAKERGPQIPPPV*NWMERG
Trigger: CCCCCTCTCCATCCAGTTCCACACAGGAGGAGGAAT...CTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCATTGCCTGAGTGTTCTTaGCCTCACCTTGGTCCGGGG +
Preference number: 4 (lower is better)
Translates to: RGLCAGQGAGSTATLEQALPECS*PHLGPG
Trigger: CCCCGGACCAAGGTGAGGCCAAGAACACTCAGGCAA...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGTGGGTGGAAGCATTTTaGCTGGTGGGTTTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWWVEAF*LVGLPE
Trigger: CTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCA...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGCATGGGCTGCTTGGGTaGAAGCATTTTGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: GDCVQAKERGPQLPWSKQHGLLG*KHFGWW
Trigger: CCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATG...CTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GAGCACACCTGTGGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCTAAGCAACGGCCACGCTCCCCACTaGGGTAACTCCCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: EHTCGWPSIRGGCLLLSNGHAPH*GNSHPS
Trigger: ACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCC...GTTGCTTAGCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp CCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCATAGGTCTGGCTGGTTaGCAGGAGCTCTGGATTTCC +
Preference number: 4 (lower is better)
Translates to: PEVQTQGTVCRPRSGVHSIGLAG*QELWIS
Trigger: GGAAATCCAGAGCTCCTGTCAACCAGCCAGACCTAT...GCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GCCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGATAGGTCTGGCTGGTTaGCAGGAGCTCTGGATTTCC +
Preference number: 4 (lower is better)
Translates to: ARSPDAGDCVQAKERGPQIGLAG*QELWIS
Trigger: GGAAATCCAGAGCTCCTGTCAACCAGCCAGACCTAT...CTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp GAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGGTGATGGGGAGCCGTaGGCAATGCCACTCCGGATA +
Preference number: 4 (lower is better)
Translates to: EQAGQRAEGSCRFFGLVVGDGEP*AMPLRI
Trigger: TATCCGGAGTGGCATTGCTCACGGCTCCCCATCACC...CACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACCCTTGATGGCAGCCTaGGTGTCTCTGAAGAAGAGA +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGPLMAA*VSLKKR
Trigger: TCTCTTCTTCAGAGACACTCAGGCTGCCATCAAGGG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp AGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCCCTTGATGGCAGCCTaGGTGTCTCTGAAGAAGAGA +
Preference number: 4 (lower is better)
Translates to: RRRGLCAGQGAGSTATLEPLMAA*VSLKKR
Trigger: TCTCTTCTTCAGAGACACTCAGGCTGCCATCAAGGG...CTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp TCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGCCCTTGATGGCAGCCTaGGTGTCTCTGAAGAAGAGA +
Preference number: 4 (lower is better)
Translates to: SRRRGLCAGQGAGSTATLPLMAA*VSLKKR
Trigger: TCTCTTCTTCAGAGACACTCAGGCTGCCATCAAGGG...CAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp ATCAGGGGTGGGTGTCTGTTGCTAAGCAACTTCGAAGGGGGCAGCCCGGTGAGTAGGGGGTCGCTGACTTaGTCCCTGGAGGTGATGGGG +
Preference number: 4 (lower is better)
Translates to: IRGGCLLLSNFEGGSPVSRGSLT*SLEVMG
Trigger: CCCCATCACCTCCAGGGAGCAAGTCAGCGACCCCCT...ACTCACCGGGCTGCCCCCTTCGAAGTTGCTTAGCAACAGACACCCACCCCTGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGGATTCTTGGCCTTTTTaGCTGGGTCCACTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKDSWPF*LGPLRV
Trigger: GACCCTCAGTGGACCCAGGCAAAAAGGCCAAGAATC...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp GAGCACACCTGTGGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCTAAGCAACCATCCCAGTCTCCGCTaGTGGAAGGGTTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: EHTCGWPSIRGGCLLLSNHPSLR*WKGWMG
Trigger: GCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATG...GTTGCTTAGCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAATTCCTCCTCCTGTGTaGAACTGGATGGAGAGGGGG +
Preference number: 4 (lower is better)
Translates to: RGLCAGQGAGSTATLEQAIPPPV*NWMERG
Trigger: CCCCCTCTCCATCCAGTTCCACACAGGAGGAGGAAT...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACATTCCTCCTCCTGTGTaGAACTGGATGGAGAGGGGG +
Preference number: 4 (lower is better)
Translates to: EVQTQGTVCRPRSGVHSYIPPPV*NWMERG
Trigger: CCCCCTCTCCATCCAGTTCCACACAGGAGGAGGAAT...GTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTCATGGGCTGCTTGGGTaGAAGCATTTTGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: QGAGSTATLEQAGQRAEGHGLLG*KHFGWW
Trigger: CCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATG...ACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTCATGGGCTGCTTGGGTaGAAGCATTTTGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTAHGLLG*KHFGWW
Trigger: CCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATG...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACGTACATGGGCTGCTTaGGTGGAAGCATTTTGGCTG +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGRTWAA*VEAFWL
Trigger: CAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGGAAATCAGAGATGTGTaGGAAGTCCTGTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKEIRDV*EVLWPW
Trigger: CCAGGGCCACAGGACTTCCCACACATCTCTGATTTC...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCGGGAGCCAGAGCCACTaGAGAAATCAGAGATGTGTG +
Preference number: 4 (lower is better)
Translates to: PEVQTQGTVCRPRSGVHSGSQSH*RNQRCV
Trigger: CACACATCTCTGATTTCTCCAGTGGCTCTGGCTCCC...GCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp ATCAGGGGTGGGTGTCTGTTGCTAAGCAACTTCGAAGGGGGCAGCCCGGTGAGTCCCAGTCTCCGCTGCTaGAAGGGTTGGATGGGCCAG +
Preference number: 4 (lower is better)
Translates to: IRGGCLLLSNFEGGSPVSPSLRC*KGWMGQ
Trigger: CTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGG...ACTCACCGGGCTGCCCCCTTCGAAGTTGCTTAGCAACAGACACCCACCCCTGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp GAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACATAGGTCTGGCTGGTTaGCAGGAGCTCTGGATTTCC +
Preference number: 4 (lower is better)
Translates to: EVQTQGTVCRPRSGVHSYIGLAG*QELWIS
Trigger: GGAAATCCAGAGCTCCTGTCAACCAGCCAGACCTAT...GTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTATCTGGGAGATGAGCTaGGACTGGCTGAGGGCACTC +
Preference number: 4 (lower is better)
Translates to: PGASRSAGRRFLQVLWAGIWEMS*DWLRAL
Trigger: GAGTGCCCTCAGCCAGTCTCAGCTCATCTCCCAGAT...ACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp ACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCTGCCCTTGAAATGGGCATCTaGTTCCTCCTCCTGTGTGGA +
Preference number: 4 (lower is better)
Translates to: TQPWGIGVSLLSLAGHPALEMGI*FLLLCG
Trigger: TCCACACAGGAGGAGGAATCAGATGCCCATTTCAAG...GGCAGGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCCTTGAAATGGGCATCTaGTTCCTCCTCCTGTGTGGA +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPLEMGI*FLLLCG
Trigger: TCCACACAGGAGGAGGAATCAGATGCCCATTTCAAG...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp GGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGTTATACGCCTGTTTCTaGTCTTCTCCCAGGCTGTCC +
Preference number: 4 (lower is better)
Translates to: GDCVQAKERGPQLPWSKQLYACF*SSPRLS
Trigger: GGACAGCCTGGGAGAAGAGCAGAAACAGGCGTATAA...CTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp AGAGACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCTTTGGCTGGTGGGTTTaGCTGAGTGTTCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: RDSALGHRCVTALAGRSPFGWWV*LSVLGL
Trigger: GAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAA...GGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp CACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTGCGAGAGAACGCGCCTaGGACAGCCTCTGTGAGATG +
Preference number: 4 (lower is better)
Translates to: HSYPGASRSAGRRFLQVLARERA*DSLCEM
Trigger: CATCTCACAGAGGCTGTCGCAGGCGCGTTCTCTCGC...AAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS-3UTR CCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGACCCGAGATCTTGAAATaGGCATCTGATTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGPEILK*ASDSSS
Trigger: GGAGGAGGAATCAGATGCCCATTTCAAGATCTCGGG...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGTGGACGCCACTATTTTaGACACATCTCCAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: PDAGDCVQAKERGPQLPWWTPLF*THLQRW
Trigger: CCACCTTTGGAGATGTGTCCAAAATAGTGGCGTCCA...CCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTTGGGTGGAAGCATTTTaGCTGGTGGGTTTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTAWVEAF*LVGLPE
Trigger: CTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCA...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp GTCGAGGGAGAGACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCCGTACATGGGCTGCTTaGGTGGAAGCATTTTGGCTG +
Preference number: 4 (lower is better)
Translates to: VEGETQPWGIGVSLLSLARTWAA*VEAFWL
Trigger: CAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACG...GGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCTCCCTCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp AAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCGAAATCAGAGATGTGTaGGAAGTCCTGTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: KSRRRGLCAGQGAGSTATEIRDV*EVLWPW
Trigger: CCAGGGCCACAGGACTTCCCACACATCTCTGATTTC...GGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCGGGAGCCAGAGCCACTaGAGAAATCAGAGATGTGTG +
Preference number: 4 (lower is better)
Translates to: KSRRRGLCAGQGAGSTATGSQSH*RNQRCV
Trigger: CACACATCTCTGATTTCTCCAGTGGCTCTGGCTCCC...GGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGGAGCCAGAGCCACTaGAGAAATCAGAGATGTGTG +
Preference number: 4 (lower is better)
Translates to: RGLCAGQGAGSTATLEQAGSQSH*RNQRCV
Trigger: CACACATCTCTGATTTCTCCAGTGGCTCTGGCTCCC...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp ACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCCCAGCATGGTCCTCTATTGGCTaGAGGCCCGGCACCCCCGCC +
Preference number: 4 (lower is better)
Translates to: TSFSIFVYTESTPVAGPAWSSIG*RPGTPA
Trigger: GGCGGGGGTGCCGGGCCTCCAGCCAATAGAGGACCA...TGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS-3UTR CCA 90 bp CCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTCCTGCCGACGACTCTTaGTCCTCTATTGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: PQLPWSKQVSGQKVPAGSPADDS*SSIGWR
Trigger: CCTCCAGCCAATAGAGGACCAAGAGTCGTCGGCAGG...AGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS-3UTR TCA 90 bp AAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTTGAAATGGGCATCTaGTTCCTCCTCCTGTGTGGA +
Preference number: 4 (lower is better)
Translates to: KSRRRGLCAGQGAGSTATLEMGI*FLLLCG
Trigger: TCCACACAGGAGGAGGAATCAGATGCCCATTTCAAG...GGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp CACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTGCTGGTGGGTTTGCCTaGGTGTTCTTGGCCTCACCT +
Preference number: 4 (lower is better)
Translates to: HSYPGASRSAGRRFLQVLAGGFA*VFLASP
Trigger: AGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGC...AAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp GGGTCCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTATACGCCTGTTTCTaGTCTTCTCCCAGGCTGTCC +
Preference number: 4 (lower is better)
Translates to: GSTATLEQAGQRAEGSCRLYACF*SSPRLS
Trigger: GGACAGCCTGGGAGAAGAGCAGAAACAGGCGTATAA...CCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGGACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp AGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTATTTGGCTGGTGGGTTTaGCTGAGTGTTCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: RSPDAGDCVQAKERGPQLFGWWV*LSVLGL
Trigger: GAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAA...TAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR GCA 90 bp GGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGCCTCTGTGAGATGCTaGTGCATAATCAGCACAGAA +
Preference number: 4 (lower is better)
Translates to: GDCVQAKERGPQLPWSKQASVRC*CIISTE
Trigger: TTCTGTGCTGATTATGCAGCAGCATCTCACAGAGGC...CTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS-3UTR CCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTCCCGAGATCTTGAAATaGGCATCTGATTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTAPEILK*ASDSSS
Trigger: GGAGGAGGAATCAGATGCCCATTTCAAGATCTCGGG...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAAGCATTTTGGCTaGTGGGTTTGCCTGAGTGTT +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPWKHFG*WVCLSV
Trigger: AACACTCAGGCAAACCCACCAGCCAAAATGCTTCCA...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp TCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGTGGAAGCATTTTGGCTaGTGGGTTTGCCTGAGTGTT +
Preference number: 4 (lower is better)
Translates to: SRRRGLCAGQGAGSTATLWKHFG*WVCLSV
Trigger: AACACTCAGGCAAACCCACCAGCCAAAATGCTTCCA...CAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR TCA 90 bp TACACTGAGAGCACACCTGTGGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCGCATGTTGGACACCATaGTGGCAGGGAGATCCATTG +
Preference number: 4 (lower is better)
Translates to: YTESTPVAGPASGVGVCCACWTP*WQGDPL
Trigger: CAATGGATCTCCCTGCCATCATGGTGTCCAACATGC...GCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp GAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACACAGCCTCTGTGAGATaGTGCTGCATAATCAGCACA +
Preference number: 4 (lower is better)
Translates to: EVQTQGTVCRPRSGVHSYTASVR*CCIIST
Trigger: TGTGCTGATTATGCAGCAGCATCTCACAGAGGCTGT...GTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS-3UTR CCA 90 bp GAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACTGTTATAGGTCTGGCTaGTTGACAGGAGCTCTGGAT +
Preference number: 4 (lower is better)
Translates to: EVQTQGTVCRPRSGVHSYCYRSG*LTGALD
Trigger: ATCCAGAGCTCCTGTCAACCAGCCAGACCTATAACA...GTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTTGTTATAGGTCTGGCTaGTTGACAGGAGCTCTGGAT +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTACYRSG*LTGALD
Trigger: ATCCAGAGCTCCTGTCAACCAGCCAGACCTATAACA...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTCTTCTTTGGATTCTTaGCCTTTTTGCCTGGGTCCA +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPSSLDS*PFCLGP
Trigger: TGGACCCAGGCAAAAAGGCCAAGAATCCAAAGAAGA...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGATCTTCTTTGGATTCTTaGCCTTTTTGCCTGGGTCCA +
Preference number: 4 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGSSLDS*PFCLGP
Trigger: TGGACCCAGGCAAAAAGGCCAAGAATCCAAAGAAGA...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTTGGACGCCACTATTTTaGACACATCTCCAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: QKSRRRGLCAGQGAGSTAWTPLF*THLQRW
Trigger: CCACCTTTGGAGATGTGTCCAAAATAGTGGCGTCCA...AGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCAAGCATTTTGGCTGGTaGGTTTGCCTGAGTGTTCTT +
Preference number: 4 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPKHFGW*VCLSVL
Trigger: AAGAACACTCAGGCAAACCCACCAGCCAAAATGCTT...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp CCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTGGGTGGAAGCATTTTaGCTGGTGGGTTTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: PQLPWSKQVSGQKVPAGSWVEAF*LVGLPE
Trigger: CTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCA...AGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTGAAATCAGAGATGTGTaGGAAGTCCTGTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: PQLPWSKQVSGQKVPAGSEIRDV*EVLWPW
Trigger: CCAGGGCCACAGGACTTCCCACACATCTCTGATTTC...AGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp TGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGGAAATCAGAGATGTGTaGGAAGTCCTGTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: WSKQVSGQKVPAGSLGWWEIRDV*EVLWPW
Trigger: CCAGGGCCACAGGACTTCCCACACATCTCTGATTTC...CCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp ACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCCCAGCAAGCAGATGGCCGTCCTaGGCCAGCATGTTGGACACC +
Preference number: 4 (lower is better)
Translates to: TSFSIFVYTESTPVAGPASRWPS*ASMLDT
Trigger: GGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCT...TGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp GAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGCCCGAGATCTTGAAATaGGCATCTGATTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: EQAGQRAEGSCRFFGLVVPEILK*ASDSSS
Trigger: GGAGGAGGAATCAGATGCCCATTTCAAGATCTCGGG...CACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTGGGAGCCAGAGCCACTaGAGAAATCAGAGATGTGTG +
Preference number: 4 (lower is better)
Translates to: HSYPGASRSAGRRFLQVLGSQSH*RNQRCV
Trigger: CACACATCTCTGATTTCTCCAGTGGCTCTGGCTCCC...AAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp ACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCCCAGCAATCTGGGAGATGAGCTaGGACTGGCTGAGGGCACTC +
Preference number: 4 (lower is better)
Translates to: TSFSIFVYTESTPVAGPAIWEMS*DWLRAL
Trigger: GAGTGCCCTCAGCCAGTCTCAGCTCATCTCCCAGAT...TGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CCACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTGGACGCCACTATTTTaGACACATCTCCAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: PQLPWSKQVSGQKVPAGSWTPLF*THLQRW
Trigger: CCACCTTTGGAGATGTGTCCAAAATAGTGGCGTCCA...AGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp AGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTAAAGCATTTTGGCTGGTaGGTTTGCCTGAGTGTTCTT +
Preference number: 4 (lower is better)
Translates to: RSPDAGDCVQAKERGPQLKHFGW*VCLSVL
Trigger: AAGAACACTCAGGCAAACCCACCAGCCAAAATGCTT...TAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CCA 90 bp TGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGAAGCATTTTGGCTaGTGGGTTTGCCTGAGTGTT +
Preference number: 4 (lower is better)
Translates to: WSKQVSGQKVPAGSLGWWWKHFG*WVCLSV
Trigger: AACACTCAGGCAAACCCACCAGCCAAAATGCTTCCA...CCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp CCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTAAGCATTTTGGCTGGTaGGTTTGCCTGAGTGTTCTT +
Preference number: 4 (lower is better)
Translates to: PGASRSAGRRFLQVLWAGKHFGW*VCLSVL
Trigger: AAGAACACTCAGGCAAACCCACCAGCCAAAATGCTT...ACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp AGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGGCAGTGGCAGCTGCTaGTGCAGTGAGGGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: RTHRTSFSIFVYTESTPVGSGSC*CSEGLR
Trigger: TCTCAGCCCCTCACTGCACCAGCAGCTGCCACTGCC...CACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp ACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCCCAGCATTTGGCTGGTGGGTTTaGCTGAGTGTTCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: TSFSIFVYTESTPVAGPAFGWWV*LSVLGL
Trigger: GAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAA...TGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp ACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCCCAGCACGTACATGGGCTGCTTaGGTGGAAGCATTTTGGCTG +
Preference number: 4 (lower is better)
Translates to: TSFSIFVYTESTPVAGPARTWAA*VEAFWL
Trigger: CAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACG...TGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp TACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCAAGCCAGGCCGGGCATaGCGTACATGGGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: YLHRTHRTSFSIFVYTESKPGRA*RTWAAW
Trigger: CCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTT...GCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp ACTACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGACGCTGCTGGAAGGGTTaGATGGGCCAGGTGAGCGGG +
Preference number: 4 (lower is better)
Translates to: TTYTEPTERVSASLCTLRRCWKG*MGQVSG
Trigger: CCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCG...TCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp TACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCGGTGATGGGGAGCCGTaGGCAATGCCACTCCGGATA +
Preference number: 4 (lower is better)
Translates to: YLHRTHRTSFSIFVYTESGDGEP*AMPLRI
Trigger: TATCCGGAGTGGCATTGCTCACGGCTCCCCATCACC...GCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CAA 72 bp ACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTaGTGTACACTGAGAGCACACCTGTGGCTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: TYTEPTERVSAS*CTLRAHLWLAQ
Trigger: CTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR TCA 90 bp TACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCGCTGGTGGGTTTGCCTaGGTGTTCTTGGCCTCACCT +
Preference number: 4 (lower is better)
Translates to: YLHRTHRTSFSIFVYTESAGGFA*VFLASP
Trigger: AGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGC...GCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CCA 90 bp TACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCAGAGCGATTTATCCCTaGGGAGCAGGCTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: YLHRTHRTSFSIFVYTESRAIYP*GAGCRC
Trigger: GCACCTGCAGCCTGCTCCCCAGGGATAAATCGCTCT...GCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR GCA 90 bp TACTTACACAGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCTTATACGCCTGTTTCTaGTCTTCTCCCAGGCTGTCC +
Preference number: 4 (lower is better)
Translates to: YLHRTHRTSFSIFVYTESLYACF*SSPRLS
Trigger: GGACAGCCTGGGAGAAGAGCAGAAACAGGCGTATAA...GCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCTGTGTAAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
3UTR CAA 72 bp AGTTCCCATTTTCTCTGTGTGCAGATTAGAATCACCTaGACAGTTGCTTGTGCACATGTCTCCCTTAAGATA +
Preference number: 4 (lower is better)
Translates to: SSHFLCVQIRIT*TVACAHVSLKI
Trigger: TATCTTAAGGGAGACATGTGCACAAGCAACTGTCAAGGTGATTCTAATCTGCACACAGAGAAAATGGGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109428.9
CDS GCA 90 bp CGTAGGCACTGTCACCATCAAACTCCGCCCCGGGACGCCCCGGCCTaGGTGGCCCGCGCCGCCCGGACCAGGGCGAACTGCAGAGGGCTC +
Preference number: 5 (lower is better)
Translates to: RRHCHHQTPPRDAPA*VARAARTRANCRGL
Trigger: GAGCCCTCTGCAGTTCGCCCTGGTCCGGGCGGCGCGGGCCACGCAGGCCGGGGCGTCCCGGGGCGGAGTTTGATGGTGACAGTGCCTACG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128999.8
CDS GCA 90 bp AGCGTCCTGGCAAGGCTGGCGGGAGAGGCTCCACTGCGGAAGGCCTaGAGGTCGGAGGGCGTCAGGAAGGAAGCCAGGCCGGGCATGGCG +
Preference number: 5 (lower is better)
Translates to: SVLARLAGEAPLRKA*RSEGVRKEARPGMA
Trigger: CGCCATGCCCGGCCTGGCTTCCTTCCTGACGCCCTCCGACCTGCAGGCCTTCCGCAGTGGAGCCTCTCCCGCCAGCCTTGCCAGGACGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS TCA 90 bp GCTGGCCAGCATCGCCGGGCGGCCCAGCAGGGGCCCTGGCCGGCCTaGGTCATATGCCGCCACCTCCGAGTGGACCATTTCCTGGATCGT +
Preference number: 5 (lower is better)
Translates to: AGQHRRAAQQGPWPA*VICRHLRVDHFLDR
Trigger: ACGATCCAGGAAATGGTCCACTCGGAGGTGGCGGCATATGACTCAGGCCGGCCAGGGCCCCTGCTGGGCCGCCCGGCGATGCTGGCCAGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS GCA 90 bp CGAGGCCACGCTCCCCACTGGGGTAACTCCCATCCCAGTCTCCGCTaGTGGAAGGGTTGGATGGGCCAGGTGAGCGGGAGCCAGAGCCAC +
Preference number: 5 (lower is better)
Translates to: RGHAPHWGNSHPSLR*WKGWMGQVSGSQSH
Trigger: GTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCCTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS CCA 90 bp GGCCACGCTCCCCACTGGGGTAACTCCCATCCCAGTCTCCGCTGCTaGAAGGGTTGGATGGGCCAGGTGAGCGGGAGCCAGAGCCACTGG +
Preference number: 5 (lower is better)
Translates to: GHAPHWGNSHPSLRC*KGWMGQVSGSQSHW
Trigger: CCAGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp GCCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGGAGGGGGTCGCTGACTaGCTCCCTGGAGGTGATGGG +
Preference number: 5 (lower is better)
Translates to: ARSPDAGDCVQAKERGPQEGVAD*LPGGDG
Trigger: CCCATCACCTCCAGGGAGCAAGTCAGCGACCCCCTC...CTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 90 bp TATCCCTGGGGAGCAGGCTGCAGGTGCCGAGGCCACGCTCCCCACTaGGGTAACTCCCATCCCAGTCTCCGCTGCTGGAAGGGTTGGATG +
Preference number: 5 (lower is better)
Translates to: YPWGAGCRCRGHAPH*GNSHPSLRCWKGWM
Trigger: CATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCCTCGGCACCTGCAGCCTGCTCCCCAGGGATA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp GGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGACTCTTGGTCCTCTATaGGCTGGAGGCCCGGCACCC +
Preference number: 5 (lower is better)
Translates to: GDCVQAKERGPQLPWSKQTLGPL*AGGPAP
Trigger: GGGTGCCGGGCCTCCAGCCAATAGAGGACCAAGAGT...CTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS CCA 90 bp AGGCCTGCAGGTCGGAGGGCGTCAGGAAGGAAGCCAGGCCGGGCATaGCGTACATGGGCTGCTTGGGTGGAAGCATTTTGGCTGGTGGGT +
Preference number: 5 (lower is better)
Translates to: RPAGRRASGRKPGRA*RTWAAWVEAFWLVG
Trigger: ACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTTCCTTCCTGACGCCCTCCGACCTGCAGGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp GGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTCCTGGGCCAGCATGTaGGACACCATGATGGCAGGG +
Preference number: 5 (lower is better)
Translates to: GTVCRPRSGVHSYPGASRSWASM*DTMMAG
Trigger: CCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGA...CCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 90 bp GGTCGGAGGGCGTCAGGAAGGAAGCCAGGCCGGGCATGGCGTACATaGGCTGCTTGGGTGGAAGCATTTTGGCTGGTGGGTTTGCCTGAG +
Preference number: 5 (lower is better)
Translates to: GRRASGRKPGRAWRT*AAWVEAFWLVGLPE
Trigger: CTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTTCCTTCCTGACGCCCTCCGACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 90 bp CCCCACTGGGGTAACTCCCATCCCAGTCTCCGCTGCTGGAAGGGTTaGATGGGCCAGGTGAGCGGGAGCCAGAGCCACTGGAGAAATCAG +
Preference number: 5 (lower is better)
Translates to: PHWGNSHPSLRCWKG*MGQVSGSQSHWRNQ
Trigger: CTGATTTCTCCAGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGTTACCCCAGTGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCATCCTGGGCCAGCATGTaGGACACCATGATGGCAGGG +
Preference number: 5 (lower is better)
Translates to: RGLCAGQGAGSTATLEQASWASM*DTMMAG
Trigger: CCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGA...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp TACACTGAGAGCACACCTGTGGCTGGCCCAGCATCAGGGGTGGGTGTCTGTTGCGAGGGGGTCGCTGACTaGCTCCCTGGAGGTGATGGG +
Preference number: 5 (lower is better)
Translates to: YTESTPVAGPASGVGVCCEGVAD*LPGGDG
Trigger: CCCATCACCTCCAGGGAGCAAGTCAGCGACCCCCTC...GCAACAGACACCCACCCCTGATGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS CCA 90 bp GCCGGGCATGGCGTACATGGGCTGCTTGGGTGGAAGCATTTTGGCTaGTGGGTTTGCCTGAGTGTTCTTGGCCTCACCTTGGTCCGGGGG +
Preference number: 5 (lower is better)
Translates to: AGHGVHGLLGWKHFG*WVCLSVLGLTLVRG
Trigger: CCCCCGGACCAAGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCAGGGAGATCCATTGCTaGGTACGAGTAGGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPREIHC*VRVGRE
Trigger: CTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCT...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGGCGTACATGGGCTGCTaGGGTGGAAGCATTTTGGCT +
Preference number: 5 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKAYMGC*GGSILA
Trigger: AGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGC...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS GCA 90 bp GTCCTGGGCCAGCATGTTGGACACCATGATGGCAGGGAGATCCATTaGTTGGTACGAGTAGGCAGGGAGCAGACCGTTGGGCGCAAGGCC +
Preference number: 5 (lower is better)
Translates to: VLGQHVGHHDGREIH*LVRVGREQTVGRKA
Trigger: GGCCTTGCGCCCAACGGTCTGCTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 90 bp CAGGGAGATCCATTGCTTGGTACGAGTAGGCAGGGAGCAGACCGTTaGGCGCAAGGCCGTGACACAGCGAGTGGTAGCCGGCTTCGTGAT +
Preference number: 5 (lower is better)
Translates to: QGDPLLGTSRQGADR*AQGRDTASGSRLRD
Trigger: ATCACGAAGCCGGCTACCACTCGCTGTGTCACGGCCTTGCGCCCAACGGTCTGCTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 90 bp GAGTGGACCATTTCCTGGATCGTGGGCAGCTGGCCTGACAGCAGATaGCCGTCCTGGGCCAGCATGTTGGACACCATGATGGCAGGGAGA +
Preference number: 5 (lower is better)
Translates to: EWTISWIVGSWPDSR*PSWASMLDTMMAGR
Trigger: TCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCAGCTGCCCACGATCCAGGAAATGGTCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 90 bp CCAGGCCGGGCATGGCGTACATGGGCTGCTTGGGTGGAAGCATTTTaGCTGGTGGGTTTGCCTGAGTGTTCTTGGCCTCACCTTGGTCCG +
Preference number: 5 (lower is better)
Translates to: PGRAWRTWAAWVEAF*LVGLPECSWPHLGP
Trigger: CGGACCAAGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp GAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTGCCTCTGCAGAGGGAGATCCATTGCTaGGTACGAGTAGGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: EGSCRFFGLVVGGGLPLQREIHC*VRVGRE
Trigger: CTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCT...CTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp GGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCAGGTTTTGGCTGGTGGGTTaGCCTGAGTGTTCTTGGCCT +
Preference number: 5 (lower is better)
Translates to: GTVCRPRSGVHSYPGASRFWLVG*PECSWP
Trigger: AGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAA...CCTGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp CCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGCCTGCCGACGACTCTaGGTCCTCTATTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: PGASRSAGRRFLQVLWAGACRRL*VLYWLE
Trigger: CTCCAGCCAATAGAGGACCAAGAGTCGTCGGCAGGC...ACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS TCA 90 bp GGCCTGACAGCAGATGGCCGTCCTGGGCCAGCATGTTGGACACCATaGTGGCAGGGAGATCCATTGCTTGGTACGAGTAGGCAGGGAGCA +
Preference number: 5 (lower is better)
Translates to: GLTADGRPGPACWTP*WQGDPLLGTSRQGA
Trigger: TGCTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS TCA 90 bp ACTCCCATCCCAGTCTCCGCTGCTGGAAGGGTTGGATGGGCCAGGTaGGCGGGAGCCAGAGCCACTGGAGAAATCAGAGATGTGTGGGAA +
Preference number: 5 (lower is better)
Translates to: TPIPVSAAGRVGWAR*AGARATGEIRDVWE
Trigger: TTCCCACACATCTCTGATTTCTCCAGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS CCA 90 bp CAGGAAGGAAGCCAGGCCGGGCATGGCGTACATGGGCTGCTTGGGTaGAAGCATTTTGGCTGGTGGGTTTGCCTGAGTGTTCTTGGCCTC +
Preference number: 5 (lower is better)
Translates to: QEGSQAGHGVHGLLG*KHFGWWVCLSVLGL
Trigger: GAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTTCCTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 90 bp GCGTCAGGAAGGAAGCCAGGCCGGGCATGGCGTACATGGGCTGCTTaGGTGGAAGCATTTTGGCTGGTGGGTTTGCCTGAGTGTTCTTGG +
Preference number: 5 (lower is better)
Translates to: ASGRKPGRAWRTWAA*VEAFWLVGLPECSW
Trigger: CCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTTCCTTCCTGACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp AGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTATAGGTCTGGCTGGTaGACAGGAGCTCTGGATTTC +
Preference number: 5 (lower is better)
Translates to: SPDAGDCVQAKERGPQLPYRSGW*TGALDF
Trigger: GAAATCCAGAGCTCCTGTCAACCAGCCAGACCTATA...GGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp CACAGCTACCCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTCCTGGGCCAGCATGTaGGACACCATGATGGCAGGG +
Preference number: 5 (lower is better)
Translates to: HSYPGASRSAGRRFLQVLSWASM*DTMMAG
Trigger: CCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGA...AAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGGGTAGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp AGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGCATTTTGGCTGGTGGGTTaGCCTGAGTGTTCTTGGCCT +
Preference number: 5 (lower is better)
Translates to: RGLCAGQGAGSTATLEQAFWLVG*PECSWP
Trigger: AGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAA...TGCTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp AGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTAGCGTACATGGGCTGCTaGGGTGGAAGCATTTTGGCT +
Preference number: 5 (lower is better)
Translates to: RSPDAGDCVQAKERGPQLAYMGC*GGSILA
Trigger: AGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGC...TAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 90 bp CAGCGAGTGGTAGCCGGCTTCGTGATCCCCCAGGTGCAGGAGGGATaGCTCAGGGAGATTGGGAGGCGTTATAGGAGGAATCTCATAGTC +
Preference number: 5 (lower is better)
Translates to: QRVVAGFVIPQVQEG*LREIGRRYRRNLIV
Trigger: GACTATGAGATTCCTCCTATAACGCCTCCCAATCTCCCTGAGCCATCCCTCCTGCACCTGGGGGATCACGAAGCCGGCTACCACTCGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000128999.8
ENSMUST00000165937.8
CDS CCA 90 bp ATTTCCTGGATCGTGGGCAGCTGGCCTGACAGCAGATGGCCGTCCTaGGCCAGCATGTTGGACACCATGATGGCAGGGAGATCCATTGCT +
Preference number: 5 (lower is better)
Translates to: ISWIVGSWPDSRWPS*ASMLDTMMAGRSIA
Trigger: AGCAATGGATCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCAGCTGCCCACGATCCAGGAAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp AGAGACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCTATAGGTCTGGCTGGTaGACAGGAGCTCTGGATTTC +
Preference number: 5 (lower is better)
Translates to: RDSALGHRCVTALAGRSPYRSGW*TGALDF
Trigger: GAAATCCAGAGCTCCTGTCAACCAGCCAGACCTATA...GGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp TGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGGATGGCTCAGGGAGATaGGGAGGCGTTATAGGAGGA +
Preference number: 5 (lower is better)
Translates to: WSKQVSGQKVPAGSLGWWDGSGR*GGVIGG
Trigger: TCCTCCTATAACGCCTCCCAATCTCCCTGAGCCATC...CCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp GTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTTTCTCTCCCGAGATCTaGAAATGGGCATCTGATTCC +
Preference number: 5 (lower is better)
Translates to: VQTQGTVCRPRSGVHSYPFSPEI*KWASDS
Trigger: GGAATCAGATGCCCATTTCAAGATCTCGGGAGAGAA...AGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp GCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGAGCAAGTTCTCTCCCGAGATCTaGAAATGGGCATCTGATTCC +
Preference number: 5 (lower is better)
Translates to: AGDCVQAKERGPQLPWSKFSPEI*KWASDS
Trigger: GGAATCAGATGCCCATTTCAAGATCTCGGGAGAGAA...CTTGCTCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp CCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTTCTTCTTTGGATTCTaGGCCTTTTTGCCTGGGTCC +
Preference number: 5 (lower is better)
Translates to: PEVQTQGTVCRPRSGVHSFFFGF*AFLPGS
Trigger: GGACCCAGGCAAAAAGGCCAAGAATCCAAAGAAGAA...GCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp CAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGCTACCCTGGATTCTTCTTTGGATTCTaGGCCTTTTTGCCTGGGTCC +
Preference number: 5 (lower is better)
Translates to: QTQGTVCRPRSGVHSYPGFFFGF*AFLPGS
Trigger: GGACCCAGGCAAAAAGGCCAAGAATCCAAAGAAGAA...TCCAGGGTAGCTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp GCCAGAAGTCCAGACGCAGGGGACTGTGTGCAGGCCAAGGAGCGGGGTCCACAGTTCTTCTTTGGATTCTaGGCCTTTTTGCCTGGGTCC +
Preference number: 5 (lower is better)
Translates to: ARSPDAGDCVQAKERGPQFFFGF*AFLPGS
Trigger: GGACCCAGGCAAAAAGGCCAAGAATCCAAAGAAGAA...CTGTGGACCCCGCTCCTTGGCCTGCACACAGTCCCCTGCGTCTGGACTTCTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS-3UTR CAA 90 bp CCTGGAGCAAGCAGGTCAGCGGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGCGTACATGGGCTGCTaGGGTGGAAGCATTTTGGCT +
Preference number: 5 (lower is better)
Translates to: PGASRSAGRRFLQVLWAGAYMGC*GGSILA
Trigger: AGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGC...ACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCCGCTGACCTGCTTGCTCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp AGAGACTCAGCCCTGGGGCATAGGTGTGTCACTGCTCTCGCTGGCCGGTCACCCTTCTCTCCCGAGATCTaGAAATGGGCATCTGATTCC +
Preference number: 5 (lower is better)
Translates to: RDSALGHRCVTALAGRSPFSPEI*KWASDS
Trigger: GGAATCAGATGCCCATTTCAAGATCTCGGGAGAGAA...GGGTGACCGGCCAGCGAGAGCAGTGACACACCTATGCCCCAGGGCTGAGTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp ATCAGGGGTGGGTGTCTGTTGCTAAGCAACTTCGAAGGGGGCAGCCCGGTGAGTTATAGGTCTGGCTGGTaGACAGGAGCTCTGGATTTC +
Preference number: 5 (lower is better)
Translates to: IRGGCLLLSNFEGGSPVSYRSGW*TGALDF
Trigger: GAAATCCAGAGCTCCTGTCAACCAGCCAGACCTATA...ACTCACCGGGCTGCCCCCTTCGAAGTTGCTTAGCAACAGACACCCACCCCTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp AGAACCCACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGAGGGGGTCGCTGACTaGCTCCCTGGAGGTGATGGG +
Preference number: 5 (lower is better)
Translates to: RTHRTSFSIFVYTESTPVEGVAD*LPGGDG
Trigger: CCCATCACCTCCAGGGAGCAAGTCAGCGACCCCCTC...CACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTGGGTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp ACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCCCAGCAGATGGCTCAGGGAGATaGGGAGGCGTTATAGGAGGA +
Preference number: 5 (lower is better)
Translates to: TSFSIFVYTESTPVAGPADGSGR*GGVIGG
Trigger: TCCTCCTATAACGCCTCCCAATCTCCCTGAGCCATC...TGCTGGGCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS-3UTR CAA 90 bp CACAGAACGAGTTTCAGCATCTTTGTGTACACTGAGAGCACACCTGTGGCTGGCAGGGAGATCCATTGCTaGGTACGAGTAGGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: HRTSFSIFVYTESTPVAGREIHC*VRVGRE
Trigger: CTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCT...GCCAGCCACAGGTGTGCTCTCAGTGTACACAAAGATGCTGAAACTCGTTCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS GCA 72 bp GCCTGCGTGGCCCGCGCCGCCCGGACCAGGGCGAACTaGAGAGGGCTCCCGGCCGCAGCCGCTCCCTTAGGG +
Preference number: 6 (lower is better)
Translates to: ACVARAARTRAN*RGLPAAAAPLG
Trigger: CCCTAAGGGAGCGGCTGCGGCCGGGAGCCCTCTGCAGTTCGCCCTGGTCCGGGCGGCGCGGGCCACGCAGGC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128999.8
CDS TCA 72 bp CATCGCCGGGCGGCCCAGCAGGGGCCCTGGCCGGCCTaGGTCATATGCCGCCACCTCCGAGTGGACCATTTC +
Preference number: 6 (lower is better)
Translates to: HRRAAQQGPWPA*VICRHLRVDHF
Trigger: GAAATGGTCCACTCGGAGGTGGCGGCATATGACTCAGGCCGGCCAGGGCCCCTGCTGGGCCGCCCGGCGATG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS GCA 72 bp ACCATCAAACTTGCCGCAGTGGTAGTAGTCCAGGTGTaGCAGGCCGGCCGGCTCGGCCCCGGGCCGCGCACC +
Preference number: 6 (lower is better)
Translates to: TIKLAAVVVVQV*QAGRLGPGPRT
Trigger: GGTGCGCGGCCCGGGGCCGAGCCGGCCGGCCTGGCACACCTGGACTACTACCACTGCGGCAAGTTTGATGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109428.9
CDS GCA 72 bp GGTTCTTTGGGCTGGTGGTGGGCGGTGGGCTGCCTCTaGAGAGTCTGCAGGTGCCGAGGCCACGCTCCCCAC +
Preference number: 6 (lower is better)
Translates to: GSLGWWWAVGCL*RVCRCRGHAPH
Trigger: GTGGGGAGCGTGGCCTCGGCACCTGCAGACTCTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS CCA 72 bp GGAGCAGGCTGCAGGTGCCGAGGCCACGCTCCCCACTaGGGTAACTCCCATCCCAGTCTCCGCTGCTGGAAG +
Preference number: 6 (lower is better)
Translates to: GAGCRCRGHAPH*GNSHPSLRCWK
Trigger: CTTCCAGCAGCGGAGACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCCTCGGCACCTGCAGCCTGCTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
CDS GCA 72 bp TCCTGTGGCCCTGGAGGTGAGGGGCTCATCGCCAGCTaGACCTGGAGTGCCATGGAGGCAGGCAGGACAGGA +
Preference number: 6 (lower is better)
Translates to: SCGPGGEGLIAS*TWSAMEAGRTG
Trigger: TCCTGTCCTGCCTGCCTCCATGGCACTCCAGGTGCAGCTGGCGATGAGCCCCTCACCTCCAGGGCCACAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS GCA 72 bp GCTCCCCACTGGGGTAACTCCCATCCCAGTCTCCGCTaGTGGAAGGGTTGGATGGGCCAGGTGAGCGGGAGC +
Preference number: 6 (lower is better)
Translates to: APHWGNSHPSLR*WKGWMGQVSGS
Trigger: GCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGTTACCCCAGTGGGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS CCA 72 bp CCCCACTGGGGTAACTCCCATCCCAGTCTCCGCTGCTaGAAGGGTTGGATGGGCCAGGTGAGCGGGAGCCAG +
Preference number: 6 (lower is better)
Translates to: PHWGNSHPSLRC*KGWMGQVSGSQ
Trigger: CTGGCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGTTACCCCAGTGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS CCA 72 bp GGTAACTCCCATCCCAGTCTCCGCTGCTGGAAGGGTTaGATGGGCCAGGTGAGCGGGAGCCAGAGCCACTGG +
Preference number: 6 (lower is better)
Translates to: GNSHPSLRCWKG*MGQVSGSQSHW
Trigger: CCAGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGTTACC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS CCA 72 bp TGCAGAGTCTGCAGGTGCCGAGGCCACGCTCCCCACTaGGGTAACTCCCATCCCAGTCTCCGCTGCTGGAAG +
Preference number: 6 (lower is better)
Translates to: CRVCRCRGHAPH*GNSHPSLRCWK
Trigger: CTTCCAGCAGCGGAGACTGGGATGGGAGTTACCCCAGTGGGGAGCGTGGCCTCGGCACCTGCAGACTCTGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS CCA 72 bp GGGCAGAAGGTTCCTGCAGGTTCTTTGGGCTGGTGGTaGGCGGTGGGCTGCCTCTGCAGAGTCTGCAGGTGC +
Preference number: 6 (lower is better)
Translates to: GQKVPAGSLGWW*AVGCLCRVCRC
Trigger: GCACCTGCAGACTCTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAAAGAACCTGCAGGAACCTTCTGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS CCA 72 bp CCATTGCTTGGTACGAGTAGGCAGGGAGCAGACCGTTaGGCGCAAGGCCGTGACACAGCGAGTGGTAGCCGG +
Preference number: 6 (lower is better)
Translates to: PLLGTSRQGADR*AQGRDTASGSR
Trigger: CCGGCTACCACTCGCTGTGTCACGGCCTTGCGCCCAACGGTCTGCTCCCTGCCTACTCGTACCAAGCAATGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 72 bp GGTCGGAGGGCGTCAGGAAGGAAGCCAGGCCGGGCATaGCGTACATGGGCTGCTTGGGTGGAAGCATTTTGG +
Preference number: 6 (lower is better)
Translates to: GRRASGRKPGRA*RTWAAWVEAFW
Trigger: CCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTTCCTTCCTGACGCCCTCCGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS TCA 72 bp CGAGTGGACCATTTCCTGGATCGTGGGCAGCTGGCCTaGCAGCAGATGGCCGTCCTGGGCCAGCATGTTGGA +
Preference number: 6 (lower is better)
Translates to: RVDHFLDRGQLA*QQMAVLGQHVG
Trigger: TCCAACATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCAGCTGCCCACGATCCAGGAAATGGTCCACTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 72 bp ATCGTGGGCAGCTGGCCTGACAGCAGATGGCCGTCCTaGGCCAGCATGTTGGACACCATGATGGCAGGGAGA +
Preference number: 6 (lower is better)
Translates to: IVGSWPDSRWPS*ASMLDTMMAGR
Trigger: TCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCAGCTGCCCACGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 72 bp GCGTCAGGAAGGAAGCCAGGCCGGGCATGGCGTACATaGGCTGCTTGGGTGGAAGCATTTTGGCTGGTGGGT +
Preference number: 6 (lower is better)
Translates to: ASGRKPGRAWRT*AAWVEAFWLVG
Trigger: ACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTTCCTTCCTGACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CAA 90 bp CTGGGCCAGCATGTTGGACACCATGATGGCAGGGAGATCCATTGCTaGGTACGAGTAGGCAGGGAGCAGACCGTTGGGCGCAAGGCCGTG +
Preference number: 6 (lower is better)
Translates to: LGQHVGHHDGREIHC*VRVGREQTVGRKAV
Trigger: CACGGCCTTGCGCCCAACGGTCTGCTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS TCA 72 bp GCAATGCCACTCCGGATACCCATCTGGGAGATGAGCTaGGACTGGCTGAGGGCACTCATGTGGCTGGCCAGC +
Preference number: 6 (lower is better)
Translates to: AMPLRIPIWEMS*DWLRALMWLAS
Trigger: GCTGGCCAGCCACATGAGTGCCCTCAGCCAGTCTCAGCTCATCTCCCAGATGGGTATCCGGAGTGGCATTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS TCA 72 bp CCAGTCTCCGCTGCTGGAAGGGTTGGATGGGCCAGGTaGGCGGGAGCCAGAGCCACTGGAGAAATCAGAGAT +
Preference number: 6 (lower is better)
Translates to: PVSAAGRVGWAR*AGARATGEIRD
Trigger: ATCTCTGATTTCTCCAGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS GCA 72 bp GGGCTGCTTGGGTGGAAGCATTTTGGCTGGTGGGTTTaGCTGAGTGTTCTTGGCCTCACCTTGGTCCGGGGG +
Preference number: 6 (lower is better)
Translates to: GLLGWKHFGWWV*LSVLGLTLVRG
Trigger: CCCCCGGACCAAGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS GCA 72 bp AGGAAGGAAGCCAGGCCGGGCATGGCGTACATGGGCTaGTTGGGTGGAAGCATTTTGGCTGGTGGGTTTGCC +
Preference number: 6 (lower is better)
Translates to: RKEARPGMAYMG*LGGSILAGGFA
Trigger: GGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTTCCTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 72 bp AGGAAGCCAGGCCGGGCATGGCGTACATGGGCTGCTTaGGTGGAAGCATTTTGGCTGGTGGGTTTGCCTGAG +
Preference number: 6 (lower is better)
Translates to: RKPGRAWRTWAA*VEAFWLVGLPE
Trigger: CTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGCCCGGCCTGGCTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 72 bp GGTTGGATGGGCCAGGTGAGCGGGAGCCAGAGCCACTaGAGAAATCAGAGATGTGTGGGAAGTCCTGTGGCC +
Preference number: 6 (lower is better)
Translates to: GWMGQVSGSQSH*RNQRCVGSPVA
Trigger: GGCCACAGGACTTCCCACACATCTCTGATTTCTCCAGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000148599.2
ENSMUST00000165937.8
CDS GCA 72 bp CATTCCACGGAAGCCCAGGCAGCGAGAGAACGCGCCTaGGACAGCCTCTGTGAGATGCTGCTGCATAATCAG +
Preference number: 6 (lower is better)
Translates to: HSTEAQAARERA*DSLCEMLLHNQ
Trigger: CTGATTATGCAGCAGCATCTCACAGAGGCTGTCGCAGGCGCGTTCTCTCGCTGCCTGGGCTTCCGTGGAATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099110.10
CDS CCA 72 bp ATTTCCTGGATCGTGGGCAGCTGGCCTGACAGCAGATaGCCGTCCTGGGCCAGCATGTTGGACACCATGATG +
Preference number: 6 (lower is better)
Translates to: ISWIVGSWPDSR*PSWASMLDTMM
Trigger: CATCATGGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCAGCTGCCCACGATCCAGGAAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CAA 72 bp TGGCCTGACAGCAGATGGCCGTCCTGGGCCAGCATGTaGGACACCATGATGGCAGGGAGATCCATTGCTTGG +
Preference number: 6 (lower is better)
Translates to: WPDSRWPSWASM*DTMMAGRSIAW
Trigger: CCAAGCAATGGATCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCTGTCAGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS TCA 72 bp GCAGATGGCCGTCCTGGGCCAGCATGTTGGACACCATaGTGGCAGGGAGATCCATTGCTTGGTACGAGTAGG +
Preference number: 6 (lower is better)
Translates to: ADGRPGPACWTP*WQGDPLLGTSR
Trigger: CCTACTCGTACCAAGCAATGGATCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGACGGCCATCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CAA 72 bp CATGTTGGACACCATGATGGCAGGGAGATCCATTGCTaGGTACGAGTAGGCAGGGAGCAGACCGTTGGGCGC +
Preference number: 6 (lower is better)
Translates to: HVGHHDGREIHC*VRVGREQTVGR
Trigger: GCGCCCAACGGTCTGCTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCTGCCATCATGGTGTCCAACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS GCA 72 bp CAGCATGTTGGACACCATGATGGCAGGGAGATCCATTaGTTGGTACGAGTAGGCAGGGAGCAGACCGTTGGG +
Preference number: 6 (lower is better)
Translates to: QHVGHHDGREIH*LVRVGREQTVG
Trigger: CCCAACGGTCTGCTCCCTGCCTACTCGTACCAAGCAATGGATCTCCCTGCCATCATGGTGTCCAACATGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 72 bp GGCGTACATGGGCTGCTTGGGTGGAAGCATTTTGGCTaGTGGGTTTGCCTGAGTGTTCTTGGCCTCACCTTG +
Preference number: 6 (lower is better)
Translates to: GVHGLLGWKHFG*WVCLSVLGLTL
Trigger: CAAGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 72 bp GCATGGCGTACATGGGCTGCTTGGGTGGAAGCATTTTaGCTGGTGGGTTTGCCTGAGTGTTCTTGGCCTCAC +
Preference number: 6 (lower is better)
Translates to: AWRTWAAWVEAF*LVGLPECSWPH
Trigger: GTGAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTACGCCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS TCA 72 bp GTTACTCTCGCCCTGGCTGTTATAGGTCTGGCTGGTTaGCAGGAGCTCTGGATTTCCGTCACTCATCCCCAC +
Preference number: 6 (lower is better)
Translates to: VTLALAVIGLAG*QELWISVTHPH
Trigger: GTGGGGATGAGTGACGGAAATCCAGAGCTCCTGTCAACCAGCCAGACCTATAACAGCCAGGGCGAGAGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000128999.8
ENSMUST00000165937.8
CDS CCA 72 bp GTACATGGGCTGCTTGGGTGGAAGCATTTTGGCTGGTaGGTTTGCCTGAGTGTTCTTGGCCTCACCTTGGTC +
Preference number: 6 (lower is better)
Translates to: VHGLLGWKHFGW*VCLSVLGLTLV
Trigger: GACCAAGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAGCAGCCCATGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CAA 72 bp CGTTACTCTCGCCCTGGCTGTTATAGGTCTGGCTGGTaGACAGGAGCTCTGGATTTCCGTCACTCATCCCCA +
Preference number: 6 (lower is better)
Translates to: RYSRPGCYRSGW*TGALDFRHSSP
Trigger: TGGGGATGAGTGACGGAAATCCAGAGCTCCTGTCAACCAGCCAGACCTATAACAGCCAGGGCGAGAGTAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000128999.8
ENSMUST00000165937.8
CDS CCA 72 bp CTTCGTTACTCTCGCCCTGGCTGTTATAGGTCTGGCTaGTTGACAGGAGCTCTGGATTTCCGTCACTCATCC +
Preference number: 6 (lower is better)
Translates to: LRYSRPGCYRSG*LTGALDFRHSS
Trigger: GGATGAGTGACGGAAATCCAGAGCTCCTGTCAACCAGCCAGACCTATAACAGCCAGGGCGAGAGTAACGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000128999.8
ENSMUST00000165937.8
CDS TCA 72 bp CTTCTTTGGATTCTTGGCCTTTTTGCCTGGGTCCACTaGGGGTCTCTTCTCTCCCGAGATCTTGAAATGGGC +
Preference number: 6 (lower is better)
Translates to: LLWILGLFAWVH*GSLLSRDLEMG
Trigger: GCCCATTTCAAGATCTCGGGAGAGAAGAGACCCTCAGTGGACCCAGGCAAAAAGGCCAAGAATCCAAAGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CCA 72 bp CATTGGGGTCCTTCTTCTTCTTCTTCTTTGGATTCTTaGCCTTTTTGCCTGGGTCCACTGAGGGTCTCTTCT +
Preference number: 6 (lower is better)
Translates to: HWGPSSSSSLDS*PFCLGPLRVSS
Trigger: AGAAGAGACCCTCAGTGGACCCAGGCAAAAAGGCCAAGAATCCAAAGAAGAAGAAGAAGAAGGACCCCAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8
CDS CAA 90 bp TCATTGGGGTCCTTCTTCTTCTTCTTCTTTGGATTCTTGGCCTTTTaGCCTGGGTCCACTGAGGGTCTCTTCTCTCCCGAGATCTTGAAA +
Preference number: 6 (lower is better)
Translates to: SLGSFFFFFFGFLAF*PGSTEGLFSPEILK
Trigger: TTTCAAGATCTCGGGAGAGAAGAGACCCTCAGTGGACCCAGGCAAAAAGGCCAAGAATCCAAAGAAGAAGAAGAAGAAGGACCCCAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099110.10
ENSMUST00000109428.9
ENSMUST00000165937.8