RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TOR4A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059555

Ensembl transcript IDs: ENSMUST00000081869.7, ENSMUST00000137920.2, ENSMUST00000142857.2

Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCAGCCTCAAAGCAGGGTTCACTTCCAAGGCTCCCAGTTTGCTATaGACTCAACCGCTGTCACTCCAGAGCCAGGGAAGGGAAGGGGCC +
Preference number: 1 (lower is better)
Translates to: VSLKAGFTSKAPSLL*TQPLSLQSQGREGA
Trigger: GGCCCCTTCCCTTCCCTGGCTCTGGAGTGACAGCGGTTGAGTCCATAGCAAACTGGGAGCCTTGGAAGTGAACCCTGCTTTGAGGCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR TCA 90 bp TTGGGAAACCTGAGCTTGGTGGTTTCCCAGGTCTCCCCAGGGTGGTaGAGACACATCATCTCCCTGGAGGTAGAGGTCTCTCCTCTCGGG +
Preference number: 1 (lower is better)
Translates to: LGNLSLVVSQVSPGW*RHIISLEVEVSPLG
Trigger: CCCGAGAGGAGAGACCTCTACCTCCAGGGAGATGATGTGTCTTCACCACCCTGGGGAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR GCA 90 bp GTGGCAACCACACAGCACAGACTGACCCCACCCCACTGGGCCTCATaGTTGTTTCCTGCTTCCTACATCGAGTCAGCCTCAAAGCAGGGT +
Preference number: 1 (lower is better)
Translates to: VATTQHRLTPPHWAS*LFPASYIESASKQG
Trigger: ACCCTGCTTTGAGGCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTGTGTGGTTGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR CCA 90 bp CGTGTAACTGTGGCAACCACACAGCACAGACTGACCCCACCCCACTaGGCCTCATGCTTGTTTCCTGCTTCCTACATCGAGTCAGCCTCA +
Preference number: 1 (lower is better)
Translates to: RVTVATTQHRLTPPH*ASCLFPASYIESAS
Trigger: TGAGGCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTGTGTGGTTGCCACAGTTACACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR TCA 90 bp AGCAGTAGGACAGACTGGAGTCCAGTGAGCCTTTCTTGGGAAACCTaGGCTTGGTGGTTTCCCAGGTCTCCCCAGGGTGGTGAAGACACA +
Preference number: 1 (lower is better)
Translates to: SSRTDWSPVSLSWET*AWWFPRSPQGGEDT
Trigger: TGTGTCTTCACCACCCTGGGGAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAAGAAAGGCTCACTGGACTCCAGTCTGTCCTACTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR TCA 90 bp AAGGGGCCAGTGAGTTCCTCAGCAGTAGGACAGACTGGAGTCCAGTaGGCCTTTCTTGGGAAACCTGAGCTTGGTGGTTTCCCAGGTCTC +
Preference number: 1 (lower is better)
Translates to: KGPVSSSAVGQTGVQ*AFLGKPELGGFPGL
Trigger: GAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAAGAAAGGCTCACTGGACTCCAGTCTGTCCTACTGCTGAGGAACTCACTGGCCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR CCA 90 bp CTGAACCTTGTAGCTGATTCCAACGCCATTCTACATGTCTGTCTCTaGGGCAAACAGGCAGCCAGTCTCACGAGGGTGGGTCTCCTCTTA +
Preference number: 1 (lower is better)
Translates to: LNLVADSNAILHVCL*GKQAASLTRVGLLL
Trigger: TAAGAGGAGACCCACCCTCGTGAGACTGGCTGCCTGTTTGCCCCAGAGACAGACATGTAGAATGGCGTTGGAATCAGCTACAAGGTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR CCA 90 bp AGACTGATGAGCATTCACAGGCAAAGTCTGGGTGCAGCCACAAGATaGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCCTTTCTGC +
Preference number: 1 (lower is better)
Translates to: RLMSIHRQSLGAATR*QHRHGQSTKKPPFC
Trigger: GCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCACCCAGACTTTGCCTGTGAATGCTCATCAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR GCA 90 bp AAACAGGCAGCCAGTCTCACGAGGGTGGGTCTCCTCTTAGGTTCATaGCCCAGAGCATCTGAAGAATTCCATGATCTACTCACTGGCTTG +
Preference number: 1 (lower is better)
Translates to: KQAASLTRVGLLLGS*PRASEEFHDLLTGL
Trigger: CAAGCCAGTGAGTAGATCATGGAATTCTTCAGATGCTCTGGGGCATGAACCTAAGAGGAGACCCACCCTCGTGAGACTGGCTGCCTGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR TCA 90 bp CTGCTCGGGTTTGTACCCTCACTTAGTCGCTCTGTAGATGGTAAGTaGATGACTACAAGCAACACTTGGCTGCGTAGGGGACACTTCCAG +
Preference number: 1 (lower is better)
Translates to: LLGFVPSLSRSVDGK*MTTSNTWLRRGHFQ
Trigger: CTGGAAGTGTCCCCTACGCAGCCAAGTGTTGCTTGTAGTCATTCACTTACCATCTACAGAGCGACTAAGTGAGGGTACAAACCCGAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR CCA 90 bp AAGCCCTATCACATGTCTCTGGGATATGATGGACATAGTGGGAGCTaGGGGTATGGGGAAGACTCCATATGGGAAGGTAGCTACTTTCCT +
Preference number: 1 (lower is better)
Translates to: KPYHMSLGYDGHSGS*GYGEDSIWEGSYFP
Trigger: AGGAAAGTAGCTACCTTCCCATATGGAGTCTTCCCCATACCCCCAGCTCCCACTATGTCCATCATATCCCAGAGACATGTGATAGGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR TCA 90 bp CTGGGTGCAGCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCAGACTGGAGTCCAGTaGGCCTTTCTTGGGAAACCT +
Preference number: 2 (lower is better)
Translates to: LGAATRWQHRHGQSTKKPQTGVQ*AFLGKP
Trigger: AGGTTTCCCAAGAAAGGCTCACTGGACTCCAGTCTG...AGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCACCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR TCA 90 bp GCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCCTTTCTTGGGAAACCTaGGCTTGGTGGTTTCCCAGG +
Preference number: 2 (lower is better)
Translates to: ATRWQHRHGQSTKKPPFCLSWET*AWWFPR
Trigger: CCTGGGAAACCACCAAGCTCAGGTTTCCCAAGAAAG...GCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR CCA 90 bp AACACTTGGCTGCGTAGGGGACACTTCCAGGTAGGTTTTCAGGTGACAACCCTAGGACATAGTGGGAGCTaGGGGTATGGGGAAGACTCC +
Preference number: 2 (lower is better)
Translates to: NTWLRRGHFQVGFQVTTLGHSGS*GYGEDS
Trigger: GGAGTCTTCCCCATACCCCCAGCTCCCACTATGTCC...TAGGGTTGTCACCTGAAAACCTACCTGGAAGTGTCCCCTACGCAGCCAAGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR CCA 90 bp CTGGGTGCAGCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCATTCAAGGGGTGGTTaGGAGTTTGTGAGAGGCATG +
Preference number: 2 (lower is better)
Translates to: LGAATRWQHRHGQSTKKPHSRGG*EFVRGM
Trigger: CATGCCTCTCACAAACTCCCAACCACCCCTTGAATG...AGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR GCA 90 bp CACTTCCTGTGTGCCCTCAAGCCACACTTTGGGAGGCACCGCTTTCTAACCCAGCTCATGCTTGTTTCCTaGTTCCTACATCGAGTCAGC +
Preference number: 2 (lower is better)
Translates to: HFLCALKPHFGRHRFLTQLMLVS*FLHRVS
Trigger: GCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAG...CTGGGTTAGAAAGCGGTGCCTCCCAAAGTGTGGCTTGAGGGCACACAGGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR GCA 90 bp CCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGGTCATGCAGGCCTAGAGACGTaGACAGACAGAGAAGCTGTC +
Preference number: 2 (lower is better)
Translates to: PSWHNPARTEQHPNSAGHAGLET*TDREAV
Trigger: GACAGCTTCTCTGTCTGTGCACGTCTCTAGGCCTGC...ATGACCTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR CCA 90 bp GAGGAGATGCTGCTCGGGTTTGTACCCTCACTTAGTCGCTCTGTAGATGGTAAGTACTTCCTAGGGTTATaGGAAGCCCTATCACATGTC +
Preference number: 2 (lower is better)
Translates to: EEMLLGFVPSLSRSVDGKYFLGL*EALSHV
Trigger: GACATGTGATAGGGCTTCCCATAACCCTAGGAAGTA...CTTACCATCTACAGAGCGACTAAGTGAGGGTACAAACCCGAGCAGCATCTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR TCA 90 bp GCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGGAGAGGTTGAACCTAGGACTTGGGGACAAGTCACCTaGCATCCTTCCTGTTTTCTT +
Preference number: 2 (lower is better)
Translates to: ASFLPCKFQANGEVEPRTWGQVT*HPSCFL
Trigger: AAGAAAACAGGAAGGATGTCAGGTGACTTGTCCCCA...AGTCCTAGGTTCAACCTCTCCATTTGCTTGGAATTTGCAAGGCAGAAAGGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR GCA 90 bp TCCTCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACACTATCTACTCACTGGCTTaGAGACATCTAACTTCCTTC +
Preference number: 2 (lower is better)
Translates to: SSLIASSVTTSCVPSSHTIYSLA*RHLTSF
Trigger: GAAGGAAGTTAGATGTCTGCAAGCCAGTGAGTAGAT...AGTGTGGCTTGAGGGCACACAGGAAGTGGTGACACTAGAAGCGATTAGAGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR GCA 90 bp ACAAGCAACACTTGGCTGCGTAGGGGACACTTCCAGGTAGGTTTTCAGGTGACAAAGAAGCCTCCTTTCTaGCTTGCAAATTCCAAGCAA +
Preference number: 2 (lower is better)
Translates to: TSNTWLRRGHFQVGFQVTKKPPF*LANSKQ
Trigger: TTGCTTGGAATTTGCAAGGCAGAAAGGAGGCTTCTT...TGTCACCTGAAAACCTACCTGGAAGTGTCCCCTACGCAGCCAAGTGTTGCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR CCA 90 bp CCAGAGCATCTGAAGAATTCCATGATCTACTCACTGGCTTGCAGACATCTAACTGAGGCATTCAAGGGGTaGTTGGGAGTTTGTGAGAGG +
Preference number: 2 (lower is better)
Translates to: PEHLKNSMIYSLACRHLTEAFKG*LGVCER
Trigger: CCTCTCACAAACTCCCAACCACCCCTTGAATGCCTC...AGTTAGATGTCTGCAAGCCAGTGAGTAGATCATGGAATTCTTCAGATGCTCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR TCA 90 bp CCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGGTCATCCTGAACCTTGTAGCTaGTTCCAACGCCATTCTACA +
Preference number: 2 (lower is better)
Translates to: PSWHNPARTEQHPNSAGHPEPCS*FQRHST
Trigger: TGTAGAATGGCGTTGGAATCAGCTACAAGGTTCAGG...ATGACCTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR CCA 72 bp GTGGCAACCACACAGCACAGACTGACCCCACCCCACTaGGCCTCATGCTTGTTTCCTGCTTCCTACATCGAG +
Preference number: 3 (lower is better)
Translates to: VATTQHRLTPPH*ASCLFPASYIE
Trigger: CTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTGTGTGGTTGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR TCA 72 bp TTCCTGGTGACCTTAGGGAATCTCAAGGCTCAGGGGTaGAGAGGACGGACGTGGAGCTCAGAGCTAAGCCAC +
Preference number: 3 (lower is better)
Translates to: FLVTLGNLKAQG*RGRTWSSELSH
Trigger: GTGGCTTAGCTCTGAGCTCCACGTCCGTCCTCTTCACCCCTGAGCCTTGAGATTCCCTAAGGTCACCAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR TCA 72 bp ACAGACTGGAGTCCAGTGAGCCTTTCTTGGGAAACCTaGGCTTGGTGGTTTCCCAGGTCTCCCCAGGGTGGT +
Preference number: 3 (lower is better)
Translates to: TDWSPVSLSWET*AWWFPRSPQGG
Trigger: ACCACCCTGGGGAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAAGAAAGGCTCACTGGACTCCAGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR GCA 72 bp AAGGGGTGGTTGGGAGTTTGTGAGAGGCATGGAGGCTaGCACATGTTCCAGAGGACCAGAATCCTACCGCAG +
Preference number: 3 (lower is better)
Translates to: KGWLGVCERHGG*HMFQRTRILPQ
Trigger: CTGCGGTAGGATTCTGGTCCTCTGGAACATGTGGCAGCCTCCATGCCTCTCACAAACTCCCAACCACCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR GCA 72 bp ACACAGCACAGACTGACCCCACCCCACTGGGCCTCATaGTTGTTTCCTGCTTCCTACATCGAGTCAGCCTCA +
Preference number: 3 (lower is better)
Translates to: TQHRLTPPHWAS*LFPASYIESAS
Trigger: TGAGGCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR GCA 72 bp ACCCAGACTGATGAGCATTCACAGGCAAAGTCTGGGTaGAGCCACAAGATGGCAGCACAGACACGGCCAGAG +
Preference number: 3 (lower is better)
Translates to: TQTDEHSQAKSG*SHKMAAQTRPE
Trigger: CTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCACCCAGACTTTGCCTGTGAATGCTCATCAGTCTGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR CCA 72 bp GTGGCCTCTAAGCTAAGGAGGCATTCAAGGGGTGGTTaGGAGTTTGTGAGAGGCATGGAGGCTGCCACATGT +
Preference number: 3 (lower is better)
Translates to: VASKLRRHSRGG*EFVRGMEAATC
Trigger: ACATGTGGCAGCCTCCATGCCTCTCACAAACTCCCAACCACCCCTTGAATGCCTCCTTAGCTTAGAGGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR TCA 72 bp GTCTCTTCTGGTGAGCAGGACCCTGAACCTTGTAGCTaGTTCCAACGCCATTCTACATGTCTGTCTCTGGGG +
Preference number: 3 (lower is better)
Translates to: VSSGEQDPEPCS*FQRHSTCLSLG
Trigger: CCCCAGAGACAGACATGTAGAATGGCGTTGGAATCAGCTACAAGGTTCAGGGTCCTGCTCACCAGAAGAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR GCA 72 bp GCCAGTCTCACGAGGGTGGGTCTCCTCTTAGGTTCATaGCCCAGAGCATCTGAAGAATTCCATGATCTACTC +
Preference number: 3 (lower is better)
Translates to: ASLTRVGLLLGS*PRASEEFHDLL
Trigger: GAGTAGATCATGGAATTCTTCAGATGCTCTGGGGCATGAACCTAAGAGGAGACCCACCCTCGTGAGACTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR CAA 90 bp TCCTCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACACTGCATTCAAGGGGTGGTaGGGAGTTTGTGAGAGGCAT +
Preference number: 3 (lower is better)
Translates to: SSLIASSVTTSCVPSSHTAFKGW*GVCERH
Trigger: ATGCCTCTCACAAACTCCCAACCACCCCTTGAATGC...AGTGTGGCTTGAGGGCACACAGGAAGTGGTGACACTAGAAGCGATTAGAGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR CAA 90 bp CACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGTTGGGAAACCTGAGCTaGGTGGTTTCCCAGGTCTCC +
Preference number: 3 (lower is better)
Translates to: HGQSTKKPPFCLANSKQMLGNLS*VVSQVS
Trigger: GGAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAA...CATTTGCTTGGAATTTGCAAGGCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR CAA 90 bp CACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGTCCAGTGAGCCTTTCTaGGGAAACCTGAGCTTGGTG +
Preference number: 3 (lower is better)
Translates to: HGQSTKKPPFCLANSKQMSSEPF*GNLSLV
Trigger: CACCAAGCTCAGGTTTCCCAAGAAAGGCTCACTGGA...CATTTGCTTGGAATTTGCAAGGCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR-3UTR CAA 90 bp AGGGGCCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGAAGCAAATGGAGAGGTaGAACCTAGGACTGCCAAAG +
Preference number: 3 (lower is better)
Translates to: RGLLGIILQELNSIQTQQKQMER*NLGLPK
Trigger: CTTTGGCAGTCCTAGGTTCAACCTCTCCATTTGCTT...CTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGGCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR TCA 72 bp TTTGTACCCTCACTTAGTCGCTCTGTAGATGGTAAGTaGATGACTACAAGCAACACTTGGCTGCGTAGGGGA +
Preference number: 3 (lower is better)
Translates to: FVPSLSRSVDGK*MTTSNTWLRRG
Trigger: TCCCCTACGCAGCCAAGTGTTGCTTGTAGTCATTCACTTACCATCTACAGAGCGACTAAGTGAGGGTACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CCA 90 bp GGGGTGAAGAGGACGGACGTGGAGCTCAGAGCTAAGCCACTGCATCAGCCTCCCATGGTGCGAACGCTGTaGCTGCAGGAGGTCGTGGAG +
Preference number: 4 (lower is better)
Translates to: GVKRTDVELRAKPLHQPPMVRTL*LQEVVE
Trigger: CTCCACGACCTCCTGCAGCCACAGCGTTCGCACCAT...GGGAGGCTGATGCAGTGGCTTAGCTCTGAGCTCCACGTCCGTCCTCTTCACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CCA 90 bp CACAGACAGAGAAGCTGTCCCCACCTCGTGGCCTCTAAGCTAAGGAGGCATTCAGTCCGGCTCAGTGCCTaGCTGCAAGAGGCGCCTCTT +
Preference number: 4 (lower is better)
Translates to: HRQRSCPHLVASKLRRHSVRLSA*LQEAPL
Trigger: AAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGAC...TGAATGCCTCCTTAGCTTAGAGGCCACGAGGTGGGGACAGCTTCTCTGTCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CCA 90 bp GCACAGACTGACCCCACCCCACTGGGCCTCATGCTTGTTTCCTGCTTCCTACATGCAGGAAGGGCACGATaGCTGCAGTGTGCCACAGAG +
Preference number: 4 (lower is better)
Translates to: AQTDPTPLGLMLVSCFLHAGRAR*LQCATE
Trigger: CTCTGTGGCACACTGCAGCCATCGTGCCCTTCCTGC...ATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR TCA 90 bp GCACAGACTGACCCCACCCCACTGGGCCTCATGCTTGTTTCCTGCTTCCTACATAACAGACGCCCCACGTaGCTCTTGCCTACACCACTG +
Preference number: 4 (lower is better)
Translates to: AQTDPTPLGLMLVSCFLHNRRPT*LLPTPL
Trigger: CAGTGGTGTAGGCAAGAGTCACGTGGGGCGTCTGTT...ATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CCA 90 bp CACAGACAGAGAAGCTGTCCCCACCTCGTGGCCTCTAAGCTAAGGAGGCATTCACATGGTCCCTTGGCCTaGGGCTCTAGGCTAGGATGG +
Preference number: 4 (lower is better)
Translates to: HRQRSCPHLVASKLRRHSHGPLA*GSRLGW
Trigger: CCATCCTAGCCTAGAGCCCCAGGCCAAGGGACCATG...TGAATGCCTCCTTAGCTTAGAGGCCACGAGGTGGGGACAGCTTCTCTGTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CCA 90 bp CACAGACAGAGAAGCTGTCCCCACCTCGTGGCCTCTAAGCTAAGGAGGCATTCATCTTGCCTACACCACTaGGCCCGTGCAGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: HRQRSCPHLVASKLRRHSSCLHH*ARAVPG
Trigger: TCCTGGCACTGCACGGGCCCAGTGGTGTAGGCAAGA...TGAATGCCTCCTTAGCTTAGAGGCCACGAGGTGGGGACAGCTTCTCTGTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR TCA 90 bp GCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCGGGTCGGCACTTCCGTaGGGTTTCTGGGTAGAGAAC +
Preference number: 4 (lower is better)
Translates to: ATRWQHRHGQSTKKPPFCGSALP*GFWVEN
Trigger: GTTCTCTACCCAGAAACCTCACGGAAGTGCCGACCC...GCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR GCA 90 bp CCCTATCACATGTCTCTGGGATATGATGGACATAGTGGGAGCTGGGGGTATGGGACTGGGCCCGTGCAGTaGCAGGAGCAAGGGATGACT +
Preference number: 4 (lower is better)
Translates to: PYHMSLGYDGHSGSWGYGTGPVQ*QEQGMT
Trigger: AGTCATCCCTTGCTCCTGGCACTGCACGGGCCCAGT...CCCATACCCCCAGCTCCCACTATGTCCATCATATCCCAGAGACATGTGATAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR CAA 72 bp CAGCACAGACTGACCCCACCCCACTGGGCCTCATGCTaGTTTCCTGCTTCCTACATCGAGTCAGCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: QHRLTPPHWASC*FPASYIESASK
Trigger: CTTTGAGGCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR GCA 90 bp AGGGGCCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGACACCACTGGGCCCGTaGAGTGCCAGGAGCAAGGGA +
Preference number: 4 (lower is better)
Translates to: RGLLGIILQELNSIQTQQTPLGP*SARSKG
Trigger: TCCCTTGCTCCTGGCACTGCACGGGCCCAGTGGTGT...CTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR GCA 90 bp GGGGTGAAGAGGACGGACGTGGAGCTCAGAGCTAAGCCACTGCATCAGCCTCCCATCCGTGACGCATTTTaGAGCACAAAGTGTGTGATC +
Preference number: 4 (lower is better)
Translates to: GVKRTDVELRAKPLHQPPIRDAF*STKCVI
Trigger: GATCACACACTTTGTGCTGCAAAATGCGTCACGGAT...GGGAGGCTGATGCAGTGGCTTAGCTCTGAGCTCCACGTCCGTCCTCTTCACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR TCA 90 bp TCCTCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACACTGCCAGGAGCAAGGGATaGCTGTGCACATGTGTAGCC +
Preference number: 4 (lower is better)
Translates to: SSLIASSVTTSCVPSSHTARSKG*LCTCVA
Trigger: GGCTACACATGTGCACAGTCATCCCTTGCTCCTGGC...AGTGTGGCTTGAGGGCACACAGGAAGTGGTGACACTAGAAGCGATTAGAGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR TCA 90 bp GAGGAGATGCTGCTCGGGTTTGTACCCTCACTTAGTCGCTCTGTAGATGGTAAGGCTCTCGAAGACTGGTaGGTAACTCCTGGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: EEMLLGFVPSLSRSVDGKALEDW*VTPGLE
Trigger: CTCCAGCCCAGGAGTTACTCACCAGTCTTCGAGAGC...CTTACCATCTACAGAGCGACTAAGTGAGGGTACAAACCCGAGCAGCATCTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR GCA 90 bp CACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGGCCCCACGTGACTCTTaGCTACACCACTGGGCCCGT +
Preference number: 4 (lower is better)
Translates to: HGQSTKKPPFCLANSKQMAPRDS*LHHWAR
Trigger: ACGGGCCCAGTGGTGTAGGCAAGAGTCACGTGGGGC...CATTTGCTTGGAATTTGCAAGGCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CCA 90 bp CTTGGGGACAAGTCACCTGACATCCTTCCTGTTTTCTTCAACAGTTCCGATTGCGCGGCCCACAGCAGCTaGCTGTCCAAACACAGAACG +
Preference number: 4 (lower is better)
Translates to: LGDKSPDILPVFFNSSDCAAHSS*LSKHRT
Trigger: CGTTCTGTGTTTGGACAGCCAGCTGCTGTGGGCCGC...GCAATCGGAACTGTTGAAGAAAACAGGAAGGATGTCAGGTGACTTGTCCCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR GCA 90 bp GTGCAGCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCCTTTATCGTGCATGGTACTaGAGAACCAAAGCACCATCT +
Preference number: 4 (lower is better)
Translates to: VQPQDGSTDTARVLRSLLYRAWY*RTKAPS
Trigger: AGATGGTGCTTTGGTTCTGCAGTACCATGCACGATA...AAGGAGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CCA 90 bp TCCTCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACACTATGGCGTTGAGAACCTaGAACCCCACAATGGCTACA +
Preference number: 4 (lower is better)
Translates to: SSLIASSVTTSCVPSSHTMALRT*NPTMAT
Trigger: TGTAGCCATTGTGGGGTTCCAGGTTCTCAACGCCAT...AGTGTGGCTTGAGGGCACACAGGAAGTGGTGACACTAGAAGCGATTAGAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
3UTR CAA 72 bp CCTTTCTGCCTTGCAAATTCCAAGCAAATGGAGAGGTaGAACCTAGGACTGCCAAAGGCTACAGGGAACCTC +
Preference number: 4 (lower is better)
Translates to: PFCLANSKQMER*NLGLPKATGNL
Trigger: GAGGTTCCCTGTAGCCTTTGGCAGTCCTAGGTTCAACCTCTCCATTTGCTTGGAATTTGCAAGGCAGAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR TCA 90 bp ATCTACCATAACCCTGGCTACTTCCTAGGGTTATGGGAAGCCCTATCACATGTCGATTCTCAATGGCGTTaGGAACCTGGAACCCCACAA +
Preference number: 4 (lower is better)
Translates to: IYHNPGYFLGLWEALSHVDSQWR*EPGTPQ
Trigger: TTGTGGGGTTCCAGGTTCTCAACGCCATTGAGAATC...GACATGTGATAGGGCTTCCCATAACCCTAGGAAGTAGCCAGGGTTATGGTAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR GCA 90 bp CCAGAGCATCTGAAGAATTCCATGATCTACTCACTGGCTTGCAGACATCTAACTCTCTGCCAGATGTTCTaGCAGTGCCTGCTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: PEHLKNSMIYSLACRHLTLCQMF*QCLLRK
Trigger: TTTCCTGAGCAGGCACTGGCAGAACATCTGGCAGAG...AGTTAGATGTCTGCAAGCCAGTGAGTAGATCATGGAATTCTTCAGATGCTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 90 bp GCCGGTGGGCCCAAGTGTCCCTGTCCCAGAGTCCGGCTCAGTGCCTaGCTGCAAGAGGCGCCTCTTGCGCAGGACGCAGACTCGGCGGCG +
Preference number: 5 (lower is better)
Translates to: AGGPKCPCPRVRLSA*LQEAPLAQDADSAA
Trigger: CGCCGCCGAGTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTCTGGGACAGGGACACTTGGGCCCACCGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 90 bp GCACTGCGCGAAAGTGGCGCGCCAACAGACGCCCCACGTGACTCTTaGCTACACCACTGGGCCCGTGCAGTGCCAGGAGCAAGGGATGAC +
Preference number: 5 (lower is better)
Translates to: ALRESGAPTDAPRDS*LHHWARAVPGARDD
Trigger: GTCATCCCTTGCTCCTGGCACTGCACGGGCCCAGTGGTGTAGGCAAGAGTCACGTGGGGCGTCTGTTGGCGCGCCACTTTCGCGCAGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS GCA 90 bp CTTCTCCTCGGCCTCAGCCTGTGCCACCACATCTGCCACTCGCTGTaGCAGCTCCTTCCGGCAGTCCTGAACCGGGCGTGGCTCTGGACA +
Preference number: 5 (lower is better)
Translates to: LLLGLSLCHHICHSL*QLLPAVLNRAWLWT
Trigger: TGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTGGCACAGCGAGTGGCAGATGTGGTGGCACAGGCTGAGGCCGAGGAGAAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS CCA 90 bp AGCCAGGTAGTCTCGCAGCAGGGCCATGATGCGGCCCACAGCAGCTaGCTGTCCAAACACAGAACGCTGCAGCGCCTTCTCCAGCCCGTC +
Preference number: 5 (lower is better)
Translates to: SQVVSQQGHDAAHSS*LSKHRTLQRLLQPV
Trigger: GACGGGCTGGAGAAGGCGCTGCAGCGTTCTGTGTTTGGACAGCCAGCTGCTGTGGGCCGCATCATGGCCCTGCTGCGAGACTACCTGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 90 bp CTCATCCAGGACCAAGAGAGGGGTCTTCTCCTCGGCCTCAGCCTGTaGCACCACATCTGCCACTCGCTGTGCCAGCTCCTTCCGGCAGTC +
Preference number: 5 (lower is better)
Translates to: LIQDQERGLLLGLSL*HHICHSLCQLLPAV
Trigger: GACTGCCGGAAGGAGCTGGCACAGCGAGTGGCAGATGTGGTGGCACAGGCTGAGGCCGAGGAGAAGACCCCTCTCTTGGTCCTGGATGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS GCA 90 bp ACATCCGGCTTGTCCAGTAGCAGGAAGGGCACGATGGCTGCAGTGTaGCACAGAGGGTGTTCTCGGGCCAGGAGCTCTCGAAGACTGGTG +
Preference number: 5 (lower is better)
Translates to: TSGLSSSRKGTMAAV*HRGCSRARSSRRLV
Trigger: CACCAGTCTTCGAGAGCTCCTGGCCCGAGAACACCCTCTGTGGCACACTGCAGCCATCGTGCCCTTCCTGCTACTGGACAAGCCGGATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 90 bp TGCCACTCGCTGTGCCAGCTCCTTCCGGCAGTCCTGAACCGGGCGTaGCTCTGGACAGTGATATCGTGCATGGTACTGCAGAACCAAAGC +
Preference number: 5 (lower is better)
Translates to: CHSLCQLLPAVLNRA*LWTVISCMVLQNQS
Trigger: GCTTTGGTTCTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTGGCACAGCGAGTGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS GCA 90 bp CTACAAGAAGCAGCAGACAACGCTGTGCACGACTCTGCCGCTCTGTaGGGGGTCGGCACTTCCGTGAGGTTTCTGGGTAGAGAACTACCC +
Preference number: 5 (lower is better)
Translates to: LQEAADNAVHDSAAL*GVGTSVRFLGRELP
Trigger: GGGTAGTTCTCTACCCAGAAACCTCACGGAAGTGCCGACCCCGCACAGAGCGGCAGAGTCGTGCACAGCGTTGTCTGCTGCTTCTTGTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 90 bp CTTCCGGCAGTCCTGAACCGGGCGTGGCTCTGGACAGTGATATCGTaGATGGTACTGCAGAACCAAAGCACCATCTTCCAGCACTGCGCG +
Preference number: 5 (lower is better)
Translates to: LPAVLNRAWLWTVIS*MVLQNQSTIFQHCA
Trigger: CGCGCAGTGCTGGAAGATGGTGCTTTGGTTCTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS CCA 90 bp TCGCTGTGCCAGCTCCTTCCGGCAGTCCTGAACCGGGCGTGGCTCTaGACAGTGATATCGTGCATGGTACTGCAGAACCAAAGCACCATC +
Preference number: 5 (lower is better)
Translates to: SLCQLLPAVLNRAWL*TVISCMVLQNQSTI
Trigger: GATGGTGCTTTGGTTCTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTGGCACAGCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS TCA 90 bp TCTCGAAGACTGGTGAGTAACTCCTGGGCTGGAGATTCCTCAGTCTaGGTACTGCCTGCGCTATGGCGGAGTGGGGGCAACATCCGTGAC +
Preference number: 5 (lower is better)
Translates to: SRRLVSNSWAGDSSV*VLPALWRSGGNIRD
Trigger: GTCACGGATGTTGCCCCCACTCCGCCATAGCGCAGGCAGTACTCAGACTGAGGAATCTCCAGCCCAGGAGTTACTCACCAGTCTTCGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS TCA 90 bp TGTGCCACAGAGGGTGTTCTCGGGCCAGGAGCTCTCGAAGACTGGTaGGTAACTCCTGGGCTGGAGATTCCTCAGTCTGAGTACTGCCTG +
Preference number: 5 (lower is better)
Translates to: CATEGVLGPGALEDW*VTPGLEIPQSEYCL
Trigger: CAGGCAGTACTCAGACTGAGGAATCTCCAGCCCAGGAGTTACTCACCAGTCTTCGAGAGCTCCTGGCCCGAGAACACCCTCTGTGGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 90 bp ATATCGTGCATGGTACTGCAGAACCAAAGCACCATCTTCCAGCACTaGGCGAAAGTGGCGCGCCAACAGACGCCCCACGTGACTCTTGCC +
Preference number: 5 (lower is better)
Translates to: ISCMVLQNQSTIFQH*AKVARQQTPHVTLA
Trigger: GGCAAGAGTCACGTGGGGCGTCTGTTGGCGCGCCACTTTCGCGCAGTGCTGGAAGATGGTGCTTTGGTTCTGCAGTACCATGCACGATAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS GCA 90 bp CTGCCTGCGCTATGGCGGAGTGGGGGCAACATCCGTGACGCATTTTaGAGCACAAAGTGTGTGATCTCTATACCACCAGCGCCACTTAGG +
Preference number: 5 (lower is better)
Translates to: LPALWRSGGNIRDAF*STKCVISIPPAPLR
Trigger: CCTAAGTGGCGCTGGTGGTATAGAGATCACACACTTTGTGCTGCAAAATGCGTCACGGATGTTGCCCCCACTCCGCCATAGCGCAGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 90 bp CTAGAAGTCAGCTCTGTCAGGCTGTCGAAGGTGAAGAATTTAGGTTaGTCTAGGTCGGCACGTAGAGTGCCCAAGCTGCCGGTGGGCCCA +
Preference number: 5 (lower is better)
Translates to: LEVSSVRLSKVKNLG*SRSARRVPKLPVGP
Trigger: TGGGCCCACCGGCAGCTTGGGCACTCTACGTGCCGACCTAGACCAACCTAAATTCTTCACCTTCGACAGCCTGACAGAGCTGACTTCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 90 bp ATAGCATTGTGGAAATGGTGCGAACGCTGTGGCTGCAGGAGGTCGTaGAGCTCATCTAGCAGCGCAGGTGGCAAGAGTTCAGCCTCATCC +
Preference number: 5 (lower is better)
Translates to: IALWKWCERCGCRRS*SSSSSAGGKSSASS
Trigger: GGATGAGGCTGAACTCTTGCCACCTGCGCTGCTAGATGAGCTCCACGACCTCCTGCAGCCACAGCGTTCGCACCATTTCCACAATGCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CAA 90 bp TTTGCTATGGACTCAACCGCTGTCACTCCAGAGCCAGGGAAGGGAAGGGGCCAGTTAGCTACTACCTGCTaGCAGCCGGTGATGGCAAAT +
Preference number: 5 (lower is better)
Translates to: FAMDSTAVTPEPGKGRGQLATTC*QPVMAN
Trigger: ATTTGCCATCACCGGCTGCAAGCAGGTAGTAGCTAA...CTGGCCCCTTCCCTTCCCTGGCTCTGGAGTGACAGCGGTTGAGTCCATAGCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CAA 90 bp TCTCTGGGATATGATGGACATAGTGGGAGCTGGGGGTATGGGGAAGACTCCATATCCTCTCTGAAGCAGTaGACCACATCCGGCTTGTCC +
Preference number: 5 (lower is better)
Translates to: SLGYDGHSGSWGYGEDSISSLKQ*TTSGLS
Trigger: GGACAAGCCGGATGTGGTCAACTGCTTCAGAGAGGA...TATGGAGTCTTCCCCATACCCCCAGCTCCCACTATGTCCATCATATCCCAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS-3UTR CAA 90 bp CCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGGTCATTTGACCACATCCGGCTaGTCCAGTAGCAGGAAGGGC +
Preference number: 5 (lower is better)
Translates to: PSWHNPARTEQHPNSAGHLTTSG*SSSRKG
Trigger: GCCCTTCCTGCTACTGGACAAGCCGGATGTGGTCAA...ATGACCTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CAA 72 bp GAGTCCGGCTCAGTGCCTGGCTGCAAGAGGCGCCTCTaGCGCAGGACGCAGACTCGGCGGCGCAGACGGAGC +
Preference number: 6 (lower is better)
Translates to: ESGSVPGCKRRL*RRTQTRRRRRS
Trigger: GCTCCGTCTGCGCCGCCGAGTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp AGTCCGGCTCAGTGCCTGGCTGCAAGAGGCGCCTCTTaGGCAGGACGCAGACTCGGCGGCGCAGACGGAGCA +
Preference number: 6 (lower is better)
Translates to: SPAQCLAARGAS*AGRRLGGADGA
Trigger: TGCTCCGTCTGCGCCGCCGAGTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACT
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp TGGGCCCAAGTGTCCCTGTCCCAGAGTCCGGCTCAGTaGCTGGCTGCAAGAGGCGCCTCTTGCGCAGGACGC +
Preference number: 6 (lower is better)
Translates to: WAQVSLSQSPAQ*LAARGASCAGR
Trigger: GCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTCTGGGACAGGGACACTTGGGCCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp AGTGTCCCTGTCCCAGAGTCCGGCTCAGTGCCTGGCTaGAAGAGGCGCCTCTTGCGCAGGACGCAGACTCGG +
Preference number: 6 (lower is better)
Translates to: SVPVPESGSVPG*KRRLLRRTQTR
Trigger: CCGAGTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTCTGGGACAGGGACACT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 72 bp CCCAAGTGTCCCTGTCCCAGAGTCCGGCTCAGTGCCTaGCTGCAAGAGGCGCCTCTTGCGCAGGACGCAGAC +
Preference number: 6 (lower is better)
Translates to: PKCPCPRVRLSA*LQEAPLAQDAD
Trigger: GTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTCTGGGACAGGGACACTTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 72 bp GGTCTAGGTCGGCACGTAGAGTGCCCAAGCTGCCGGTaGGCCCAAGTGTCCCTGTCCCAGAGTCCGGCTCAG +
Preference number: 6 (lower is better)
Translates to: GLGRHVECPSCR*AQVSLSQSPAQ
Trigger: CTGAGCCGGACTCTGGGACAGGGACACTTGGGCCCACCGGCAGCTTGGGCACTCTACGTGCCGACCTAGACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CAA 72 bp AGCACGGCGCGCACTGGCGCTATCACACATGGTCCCTaGGCCTGGGGCTCTAGGCTAGGATGGCTGCGGTCC +
Preference number: 6 (lower is better)
Translates to: STARTGAITHGP*AWGSRLGWLRS
Trigger: GGACCGCAGCCATCCTAGCCTAGAGCCCCAGGCCAAGGGACCATGTGTGATAGCGCCAGTGCGCGCCGTGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000137920.2
CDS GCA 72 bp GAAAGTGGCGCGCCAACAGACGCCCCACGTGACTCTTaGCTACACCACTGGGCCCGTGCAGTGCCAGGAGCA +
Preference number: 6 (lower is better)
Translates to: ESGAPTDAPRDS*LHHWARAVPGA
Trigger: TGCTCCTGGCACTGCACGGGCCCAGTGGTGTAGGCAAGAGTCACGTGGGGCGTCTGTTGGCGCGCCACTTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS CCA 72 bp GTCTCGCAGCAGGGCCATGATGCGGCCCACAGCAGCTaGCTGTCCAAACACAGAACGCTGCAGCGCCTTCTC +
Preference number: 6 (lower is better)
Translates to: VSQQGHDAAHSS*LSKHRTLQRLL
Trigger: GAGAAGGCGCTGCAGCGTTCTGTGTTTGGACAGCCAGCTGCTGTGGGCCGCATCATGGCCCTGCTGCGAGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp GCAGCAGACAACGCTGTGCACGACTCTGCCGCTCTGTaGGGGGTCGGCACTTCCGTGAGGTTTCTGGGTAGA +
Preference number: 6 (lower is better)
Translates to: AADNAVHDSAAL*GVGTSVRFLGR
Trigger: TCTACCCAGAAACCTCACGGAAGTGCCGACCCCGCACAGAGCGGCAGAGTCGTGCACAGCGTTGTCTGCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp GACCAAGAGAGGGGTCTTCTCCTCGGCCTCAGCCTGTaGCACCACATCTGCCACTCGCTGTGCCAGCTCCTT +
Preference number: 6 (lower is better)
Translates to: DQERGLLLGLSL*HHICHSLCQLL
Trigger: AAGGAGCTGGCACAGCGAGTGGCAGATGTGGTGGCACAGGCTGAGGCCGAGGAGAAGACCCCTCTCTTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS CCA 72 bp CCAACAGACGCCCCACGTGACTCTTGCCTACACCACTaGGCCCGTGCAGTGCCAGGAGCAAGGGATGACTGT +
Preference number: 6 (lower is better)
Translates to: PTDAPRDSCLHH*ARAVPGARDDC
Trigger: ACAGTCATCCCTTGCTCCTGGCACTGCACGGGCCCAGTGGTGTAGGCAAGAGTCACGTGGGGCGTCTGTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS CCA 72 bp CCACATCCGGCTTGTCCAGTAGCAGGAAGGGCACGATaGCTGCAGTGTGCCACAGAGGGTGTTCTCGGGCCA +
Preference number: 6 (lower is better)
Translates to: PHPACPVAGRAR*LQCATEGVLGP
Trigger: TGGCCCGAGAACACCCTCTGTGGCACACTGCAGCCATCGTGCCCTTCCTGCTACTGGACAAGCCGGATGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS TCA 72 bp ACGACTCTGCCGCTCTGTGCGGGGTCGGCACTTCCGTaGGGTTTCTGGGTAGAGAACTACCCGACTACGCCT +
Preference number: 6 (lower is better)
Translates to: TTLPLCAGSALP*GFWVENYPTTP
Trigger: AGGCGTAGTCGGGTAGTTCTCTACCCAGAAACCTCACGGAAGTGCCGACCCCGCACAGAGCGGCAGAGTCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp CCCCACAATGGCTACAAGAAGCAGCAGACAACGCTGTaGACGACTCTGCCGCTCTGTGCGGGGTCGGCACTT +
Preference number: 6 (lower is better)
Translates to: PHNGYKKQQTTL*TTLPLCAGSAL
Trigger: AAGTGCCGACCCCGCACAGAGCGGCAGAGTCGTGCACAGCGTTGTCTGCTGCTTCTTGTAGCCATTGTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp TTGTCCAGTAGCAGGAAGGGCACGATGGCTGCAGTGTaGCACAGAGGGTGTTCTCGGGCCAGGAGCTCTCGA +
Preference number: 6 (lower is better)
Translates to: LSSSRKGTMAAV*HRGCSRARSSR
Trigger: TCGAGAGCTCCTGGCCCGAGAACACCCTCTGTGGCACACTGCAGCCATCGTGCCCTTCCTGCTACTGGACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 72 bp CTGTGCCAGCTCCTTCCGGCAGTCCTGAACCGGGCGTaGCTCTGGACAGTGATATCGTGCATGGTACTGCAG +
Preference number: 6 (lower is better)
Translates to: LCQLLPAVLNRA*LWTVISCMVLQ
Trigger: CTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTGGCACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS GCA 72 bp ATGGTACTGCAGAACCAAAGCACCATCTTCCAGCACTaGGCGAAAGTGGCGCGCCAACAGACGCCCCACGTG +
Preference number: 6 (lower is better)
Translates to: MVLQNQSTIFQH*AKVARQQTPHV
Trigger: CACGTGGGGCGTCTGTTGGCGCGCCACTTTCGCGCAGTGCTGGAAGATGGTGCTTTGGTTCTGCAGTACCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS TCA 72 bp GAGGGTGTTCTCGGGCCAGGAGCTCTCGAAGACTGGTaGGTAACTCCTGGGCTGGAGATTCCTCAGTCTGAG +
Preference number: 6 (lower is better)
Translates to: EGVLGPGALEDW*VTPGLEIPQSE
Trigger: CTCAGACTGAGGAATCTCCAGCCCAGGAGTTACTCACCAGTCTTCGAGAGCTCCTGGCCCGAGAACACCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 72 bp CAGCTCCTTCCGGCAGTCCTGAACCGGGCGTGGCTCTaGACAGTGATATCGTGCATGGTACTGCAGAACCAA +
Preference number: 6 (lower is better)
Translates to: QLLPAVLNRAWL*TVISCMVLQNQ
Trigger: TTGGTTCTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081869.7
ENSMUST00000142857.2
CDS CCA 72 bp TGGAAATGGTGCGAACGCTGTGGCTGCAGGAGGTCGTaGAGCTCATCTAGCAGCGCAGGTGGCAAGAGTTCA +
Preference number: 6 (lower is better)
Translates to: WKWCERCGCRRS*SSSSSAGGKSS
Trigger: TGAACTCTTGCCACCTGCGCTGCTAGATGAGCTCCACGACCTCCTGCAGCCACAGCGTTCGCACCATTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CAA 72 bp GCCATCTCCTCTCTGAAGCAGTTGACCACATCCGGCTaGTCCAGTAGCAGGAAGGGCACGATGGCTGCAGTG +
Preference number: 6 (lower is better)
Translates to: AISSLKQLTTSG*SSSRKGTMAAV
Trigger: CACTGCAGCCATCGTGCCCTTCCTGCTACTGGACAAGCCGGATGTGGTCAACTGCTTCAGAGAGGAGATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 72 bp AGCTCTGTCAGGCTGTCGAAGGTGAAGAATTTAGGTTaGTCTAGGTCGGCACGTAGAGTGCCCAAGCTGCCG +
Preference number: 6 (lower is better)
Translates to: SSVRLSKVKNLG*SRSARRVPKLP
Trigger: CGGCAGCTTGGGCACTCTACGTGCCGACCTAGACCAACCTAAATTCTTCACCTTCGACAGCCTGACAGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS TCA 72 bp ACTGCCTGCGCTATGGCGGAGTGGGGGCAACATCCGTaGCGCATTTTGCAGCACAAAGTGTGTGATCTCTAT +
Preference number: 6 (lower is better)
Translates to: TACAMAEWGQHP*RILQHKVCDLY
Trigger: ATAGAGATCACACACTTTGTGCTGCAAAATGCGTCACGGATGTTGCCCCCACTCCGCCATAGCGCAGGCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp CTATGGCGGAGTGGGGGCAACATCCGTGACGCATTTTaGAGCACAAAGTGTGTGATCTCTATACCACCAGCG +
Preference number: 6 (lower is better)
Translates to: LWRSGGNIRDAF*STKCVISIPPA
Trigger: CGCTGGTGGTATAGAGATCACACACTTTGTGCTGCAAAATGCGTCACGGATGTTGCCCCCACTCCGCCATAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS GCA 72 bp GGCTTGTGCTGTAAGAGGTTGACCTTAGCTACTACCTaGTTGCAGCCGGTGATGGCAAATTCATGTCCAGCA +
Preference number: 6 (lower is better)
Translates to: GLCCKRLTLATT*LQPVMANSCPA
Trigger: TGCTGGACATGAATTTGCCATCACCGGCTGCAAGCAGGTAGTAGCTAAGGTCAACCTCTTACAGCACAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS TCA 72 bp GCAACATCCGTGACGCATTTTGCAGCACAAAGTGTGTaGTCTCTATACCACCAGCGCCACTTAGGAGTACAT +
Preference number: 6 (lower is better)
Translates to: ATSVTHFAAQSV*SLYHQRHLGVH
Trigger: ATGTACTCCTAAGTGGCGCTGGTGGTATAGAGATCACACACTTTGTGCTGCAAAATGCGTCACGGATGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CAA 72 bp TTGTGCTGTAAGAGGTTGACCTTAGCTACTACCTGCTaGCAGCCGGTGATGGCAAATTCATGTCCAGCAACA +
Preference number: 6 (lower is better)
Translates to: LCCKRLTLATTC*QPVMANSCPAT
Trigger: TGTTGCTGGACATGAATTTGCCATCACCGGCTGCAAGCAGGTAGTAGCTAAGGTCAACCTCTTACAGCACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7
CDS CCA 72 bp GCATTATCGTCTAGATTCTCAATGGCGTTGAGAACCTaGAACCCCACAATGGCTACAAGAAGCAGCAGACAA +
Preference number: 6 (lower is better)
Translates to: ALSSRFSMALRT*NPTMATRSSRQ
Trigger: TTGTCTGCTGCTTCTTGTAGCCATTGTGGGGTTCCAGGTTCTCAACGCCATTGAGAATCTAGACGATAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081869.7