Pregenerated sensors for TOR4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059555Ensembl transcript IDs: ENSMUST00000081869.7, ENSMUST00000137920.2, ENSMUST00000142857.2
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCAGCCTCAAAGCAGGGTTCACTTCCAAGGCTCCCAGTTTGCTATaGACTCAACCGCTGTCACTCCAGAGCCAGGGAAGGGAAGGGGCC | + |
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Preference number: 1 (lower is better) Translates to: VSLKAGFTSKAPSLL*TQPLSLQSQGREGA Trigger: GGCCCCTTCCCTTCCCTGGCTCTGGAGTGACAGCGGTTGAGTCCATAGCAAACTGGGAGCCTTGGAAGTGAACCCTGCTTTGAGGCTGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR TCA 90 bp | TTGGGAAACCTGAGCTTGGTGGTTTCCCAGGTCTCCCCAGGGTGGTaGAGACACATCATCTCCCTGGAGGTAGAGGTCTCTCCTCTCGGG | + |
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Preference number: 1 (lower is better) Translates to: LGNLSLVVSQVSPGW*RHIISLEVEVSPLG Trigger: CCCGAGAGGAGAGACCTCTACCTCCAGGGAGATGATGTGTCTTCACCACCCTGGGGAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR GCA 90 bp | GTGGCAACCACACAGCACAGACTGACCCCACCCCACTGGGCCTCATaGTTGTTTCCTGCTTCCTACATCGAGTCAGCCTCAAAGCAGGGT | + |
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Preference number: 1 (lower is better) Translates to: VATTQHRLTPPHWAS*LFPASYIESASKQG Trigger: ACCCTGCTTTGAGGCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTGTGTGGTTGCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR CCA 90 bp | CGTGTAACTGTGGCAACCACACAGCACAGACTGACCCCACCCCACTaGGCCTCATGCTTGTTTCCTGCTTCCTACATCGAGTCAGCCTCA | + |
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Preference number: 1 (lower is better) Translates to: RVTVATTQHRLTPPH*ASCLFPASYIESAS Trigger: TGAGGCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTGTGTGGTTGCCACAGTTACACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR TCA 90 bp | AGCAGTAGGACAGACTGGAGTCCAGTGAGCCTTTCTTGGGAAACCTaGGCTTGGTGGTTTCCCAGGTCTCCCCAGGGTGGTGAAGACACA | + |
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Preference number: 1 (lower is better) Translates to: SSRTDWSPVSLSWET*AWWFPRSPQGGEDT Trigger: TGTGTCTTCACCACCCTGGGGAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAAGAAAGGCTCACTGGACTCCAGTCTGTCCTACTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR TCA 90 bp | AAGGGGCCAGTGAGTTCCTCAGCAGTAGGACAGACTGGAGTCCAGTaGGCCTTTCTTGGGAAACCTGAGCTTGGTGGTTTCCCAGGTCTC | + |
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Preference number: 1 (lower is better) Translates to: KGPVSSSAVGQTGVQ*AFLGKPELGGFPGL Trigger: GAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAAGAAAGGCTCACTGGACTCCAGTCTGTCCTACTGCTGAGGAACTCACTGGCCCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR CCA 90 bp | CTGAACCTTGTAGCTGATTCCAACGCCATTCTACATGTCTGTCTCTaGGGCAAACAGGCAGCCAGTCTCACGAGGGTGGGTCTCCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: LNLVADSNAILHVCL*GKQAASLTRVGLLL Trigger: TAAGAGGAGACCCACCCTCGTGAGACTGGCTGCCTGTTTGCCCCAGAGACAGACATGTAGAATGGCGTTGGAATCAGCTACAAGGTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR CCA 90 bp | AGACTGATGAGCATTCACAGGCAAAGTCTGGGTGCAGCCACAAGATaGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCCTTTCTGC | + |
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Preference number: 1 (lower is better) Translates to: RLMSIHRQSLGAATR*QHRHGQSTKKPPFC Trigger: GCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCACCCAGACTTTGCCTGTGAATGCTCATCAGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR GCA 90 bp | AAACAGGCAGCCAGTCTCACGAGGGTGGGTCTCCTCTTAGGTTCATaGCCCAGAGCATCTGAAGAATTCCATGATCTACTCACTGGCTTG | + |
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Preference number: 1 (lower is better) Translates to: KQAASLTRVGLLLGS*PRASEEFHDLLTGL Trigger: CAAGCCAGTGAGTAGATCATGGAATTCTTCAGATGCTCTGGGGCATGAACCTAAGAGGAGACCCACCCTCGTGAGACTGGCTGCCTGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR TCA 90 bp | CTGCTCGGGTTTGTACCCTCACTTAGTCGCTCTGTAGATGGTAAGTaGATGACTACAAGCAACACTTGGCTGCGTAGGGGACACTTCCAG | + |
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Preference number: 1 (lower is better) Translates to: LLGFVPSLSRSVDGK*MTTSNTWLRRGHFQ Trigger: CTGGAAGTGTCCCCTACGCAGCCAAGTGTTGCTTGTAGTCATTCACTTACCATCTACAGAGCGACTAAGTGAGGGTACAAACCCGAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR CCA 90 bp | AAGCCCTATCACATGTCTCTGGGATATGATGGACATAGTGGGAGCTaGGGGTATGGGGAAGACTCCATATGGGAAGGTAGCTACTTTCCT | + |
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Preference number: 1 (lower is better) Translates to: KPYHMSLGYDGHSGS*GYGEDSIWEGSYFP Trigger: AGGAAAGTAGCTACCTTCCCATATGGAGTCTTCCCCATACCCCCAGCTCCCACTATGTCCATCATATCCCAGAGACATGTGATAGGGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR TCA 90 bp | CTGGGTGCAGCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCAGACTGGAGTCCAGTaGGCCTTTCTTGGGAAACCT | + |
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Preference number: 2 (lower is better) Translates to: LGAATRWQHRHGQSTKKPQTGVQ*AFLGKP Trigger: AGGTTTCCCAAGAAAGGCTCACTGGACTCCAGTCTG...AGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCACCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR TCA 90 bp | GCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCCTTTCTTGGGAAACCTaGGCTTGGTGGTTTCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: ATRWQHRHGQSTKKPPFCLSWET*AWWFPR Trigger: CCTGGGAAACCACCAAGCTCAGGTTTCCCAAGAAAG...GCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR CCA 90 bp | AACACTTGGCTGCGTAGGGGACACTTCCAGGTAGGTTTTCAGGTGACAACCCTAGGACATAGTGGGAGCTaGGGGTATGGGGAAGACTCC | + |
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Preference number: 2 (lower is better) Translates to: NTWLRRGHFQVGFQVTTLGHSGS*GYGEDS Trigger: GGAGTCTTCCCCATACCCCCAGCTCCCACTATGTCC...TAGGGTTGTCACCTGAAAACCTACCTGGAAGTGTCCCCTACGCAGCCAAGTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR CCA 90 bp | CTGGGTGCAGCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCATTCAAGGGGTGGTTaGGAGTTTGTGAGAGGCATG | + |
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Preference number: 2 (lower is better) Translates to: LGAATRWQHRHGQSTKKPHSRGG*EFVRGM Trigger: CATGCCTCTCACAAACTCCCAACCACCCCTTGAATG...AGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCACCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR GCA 90 bp | CACTTCCTGTGTGCCCTCAAGCCACACTTTGGGAGGCACCGCTTTCTAACCCAGCTCATGCTTGTTTCCTaGTTCCTACATCGAGTCAGC | + |
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Preference number: 2 (lower is better) Translates to: HFLCALKPHFGRHRFLTQLMLVS*FLHRVS Trigger: GCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAG...CTGGGTTAGAAAGCGGTGCCTCCCAAAGTGTGGCTTGAGGGCACACAGGAAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR GCA 90 bp | CCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGGTCATGCAGGCCTAGAGACGTaGACAGACAGAGAAGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: PSWHNPARTEQHPNSAGHAGLET*TDREAV Trigger: GACAGCTTCTCTGTCTGTGCACGTCTCTAGGCCTGC...ATGACCTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR CCA 90 bp | GAGGAGATGCTGCTCGGGTTTGTACCCTCACTTAGTCGCTCTGTAGATGGTAAGTACTTCCTAGGGTTATaGGAAGCCCTATCACATGTC | + |
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Preference number: 2 (lower is better) Translates to: EEMLLGFVPSLSRSVDGKYFLGL*EALSHV Trigger: GACATGTGATAGGGCTTCCCATAACCCTAGGAAGTA...CTTACCATCTACAGAGCGACTAAGTGAGGGTACAAACCCGAGCAGCATCTCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR TCA 90 bp | GCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGGAGAGGTTGAACCTAGGACTTGGGGACAAGTCACCTaGCATCCTTCCTGTTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: ASFLPCKFQANGEVEPRTWGQVT*HPSCFL Trigger: AAGAAAACAGGAAGGATGTCAGGTGACTTGTCCCCA...AGTCCTAGGTTCAACCTCTCCATTTGCTTGGAATTTGCAAGGCAGAAAGGAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR GCA 90 bp | TCCTCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACACTATCTACTCACTGGCTTaGAGACATCTAACTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: SSLIASSVTTSCVPSSHTIYSLA*RHLTSF Trigger: GAAGGAAGTTAGATGTCTGCAAGCCAGTGAGTAGAT...AGTGTGGCTTGAGGGCACACAGGAAGTGGTGACACTAGAAGCGATTAGAGAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR GCA 90 bp | ACAAGCAACACTTGGCTGCGTAGGGGACACTTCCAGGTAGGTTTTCAGGTGACAAAGAAGCCTCCTTTCTaGCTTGCAAATTCCAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: TSNTWLRRGHFQVGFQVTKKPPF*LANSKQ Trigger: TTGCTTGGAATTTGCAAGGCAGAAAGGAGGCTTCTT...TGTCACCTGAAAACCTACCTGGAAGTGTCCCCTACGCAGCCAAGTGTTGCTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR CCA 90 bp | CCAGAGCATCTGAAGAATTCCATGATCTACTCACTGGCTTGCAGACATCTAACTGAGGCATTCAAGGGGTaGTTGGGAGTTTGTGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: PEHLKNSMIYSLACRHLTEAFKG*LGVCER Trigger: CCTCTCACAAACTCCCAACCACCCCTTGAATGCCTC...AGTTAGATGTCTGCAAGCCAGTGAGTAGATCATGGAATTCTTCAGATGCTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR TCA 90 bp | CCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGGTCATCCTGAACCTTGTAGCTaGTTCCAACGCCATTCTACA | + |
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Preference number: 2 (lower is better) Translates to: PSWHNPARTEQHPNSAGHPEPCS*FQRHST Trigger: TGTAGAATGGCGTTGGAATCAGCTACAAGGTTCAGG...ATGACCTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR CCA 72 bp | GTGGCAACCACACAGCACAGACTGACCCCACCCCACTaGGCCTCATGCTTGTTTCCTGCTTCCTACATCGAG | + |
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Preference number: 3 (lower is better) Translates to: VATTQHRLTPPH*ASCLFPASYIE Trigger: CTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTGTGTGGTTGCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR TCA 72 bp | TTCCTGGTGACCTTAGGGAATCTCAAGGCTCAGGGGTaGAGAGGACGGACGTGGAGCTCAGAGCTAAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: FLVTLGNLKAQG*RGRTWSSELSH Trigger: GTGGCTTAGCTCTGAGCTCCACGTCCGTCCTCTTCACCCCTGAGCCTTGAGATTCCCTAAGGTCACCAGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR TCA 72 bp | ACAGACTGGAGTCCAGTGAGCCTTTCTTGGGAAACCTaGGCTTGGTGGTTTCCCAGGTCTCCCCAGGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: TDWSPVSLSWET*AWWFPRSPQGG Trigger: ACCACCCTGGGGAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAAGAAAGGCTCACTGGACTCCAGTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR GCA 72 bp | AAGGGGTGGTTGGGAGTTTGTGAGAGGCATGGAGGCTaGCACATGTTCCAGAGGACCAGAATCCTACCGCAG | + |
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Preference number: 3 (lower is better) Translates to: KGWLGVCERHGG*HMFQRTRILPQ Trigger: CTGCGGTAGGATTCTGGTCCTCTGGAACATGTGGCAGCCTCCATGCCTCTCACAAACTCCCAACCACCCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR GCA 72 bp | ACACAGCACAGACTGACCCCACCCCACTGGGCCTCATaGTTGTTTCCTGCTTCCTACATCGAGTCAGCCTCA | + |
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Preference number: 3 (lower is better) Translates to: TQHRLTPPHWAS*LFPASYIESAS Trigger: TGAGGCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR GCA 72 bp | ACCCAGACTGATGAGCATTCACAGGCAAAGTCTGGGTaGAGCCACAAGATGGCAGCACAGACACGGCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: TQTDEHSQAKSG*SHKMAAQTRPE Trigger: CTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCACCCAGACTTTGCCTGTGAATGCTCATCAGTCTGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR CCA 72 bp | GTGGCCTCTAAGCTAAGGAGGCATTCAAGGGGTGGTTaGGAGTTTGTGAGAGGCATGGAGGCTGCCACATGT | + |
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Preference number: 3 (lower is better) Translates to: VASKLRRHSRGG*EFVRGMEAATC Trigger: ACATGTGGCAGCCTCCATGCCTCTCACAAACTCCCAACCACCCCTTGAATGCCTCCTTAGCTTAGAGGCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR TCA 72 bp | GTCTCTTCTGGTGAGCAGGACCCTGAACCTTGTAGCTaGTTCCAACGCCATTCTACATGTCTGTCTCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: VSSGEQDPEPCS*FQRHSTCLSLG Trigger: CCCCAGAGACAGACATGTAGAATGGCGTTGGAATCAGCTACAAGGTTCAGGGTCCTGCTCACCAGAAGAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR GCA 72 bp | GCCAGTCTCACGAGGGTGGGTCTCCTCTTAGGTTCATaGCCCAGAGCATCTGAAGAATTCCATGATCTACTC | + |
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Preference number: 3 (lower is better) Translates to: ASLTRVGLLLGS*PRASEEFHDLL Trigger: GAGTAGATCATGGAATTCTTCAGATGCTCTGGGGCATGAACCTAAGAGGAGACCCACCCTCGTGAGACTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR CAA 90 bp | TCCTCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACACTGCATTCAAGGGGTGGTaGGGAGTTTGTGAGAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: SSLIASSVTTSCVPSSHTAFKGW*GVCERH Trigger: ATGCCTCTCACAAACTCCCAACCACCCCTTGAATGC...AGTGTGGCTTGAGGGCACACAGGAAGTGGTGACACTAGAAGCGATTAGAGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR CAA 90 bp | CACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGTTGGGAAACCTGAGCTaGGTGGTTTCCCAGGTCTCC | + |
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Preference number: 3 (lower is better) Translates to: HGQSTKKPPFCLANSKQMLGNLS*VVSQVS Trigger: GGAGACCTGGGAAACCACCAAGCTCAGGTTTCCCAA...CATTTGCTTGGAATTTGCAAGGCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR CAA 90 bp | CACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGTCCAGTGAGCCTTTCTaGGGAAACCTGAGCTTGGTG | + |
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Preference number: 3 (lower is better) Translates to: HGQSTKKPPFCLANSKQMSSEPF*GNLSLV Trigger: CACCAAGCTCAGGTTTCCCAAGAAAGGCTCACTGGA...CATTTGCTTGGAATTTGCAAGGCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR-3UTR CAA 90 bp | AGGGGCCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGAAGCAAATGGAGAGGTaGAACCTAGGACTGCCAAAG | + |
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Preference number: 3 (lower is better) Translates to: RGLLGIILQELNSIQTQQKQMER*NLGLPK Trigger: CTTTGGCAGTCCTAGGTTCAACCTCTCCATTTGCTT...CTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGGCCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR TCA 72 bp | TTTGTACCCTCACTTAGTCGCTCTGTAGATGGTAAGTaGATGACTACAAGCAACACTTGGCTGCGTAGGGGA | + |
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Preference number: 3 (lower is better) Translates to: FVPSLSRSVDGK*MTTSNTWLRRG Trigger: TCCCCTACGCAGCCAAGTGTTGCTTGTAGTCATTCACTTACCATCTACAGAGCGACTAAGTGAGGGTACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CCA 90 bp | GGGGTGAAGAGGACGGACGTGGAGCTCAGAGCTAAGCCACTGCATCAGCCTCCCATGGTGCGAACGCTGTaGCTGCAGGAGGTCGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: GVKRTDVELRAKPLHQPPMVRTL*LQEVVE Trigger: CTCCACGACCTCCTGCAGCCACAGCGTTCGCACCAT...GGGAGGCTGATGCAGTGGCTTAGCTCTGAGCTCCACGTCCGTCCTCTTCACCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CCA 90 bp | CACAGACAGAGAAGCTGTCCCCACCTCGTGGCCTCTAAGCTAAGGAGGCATTCAGTCCGGCTCAGTGCCTaGCTGCAAGAGGCGCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: HRQRSCPHLVASKLRRHSVRLSA*LQEAPL Trigger: AAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGAC...TGAATGCCTCCTTAGCTTAGAGGCCACGAGGTGGGGACAGCTTCTCTGTCTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CCA 90 bp | GCACAGACTGACCCCACCCCACTGGGCCTCATGCTTGTTTCCTGCTTCCTACATGCAGGAAGGGCACGATaGCTGCAGTGTGCCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: AQTDPTPLGLMLVSCFLHAGRAR*LQCATE Trigger: CTCTGTGGCACACTGCAGCCATCGTGCCCTTCCTGC...ATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR TCA 90 bp | GCACAGACTGACCCCACCCCACTGGGCCTCATGCTTGTTTCCTGCTTCCTACATAACAGACGCCCCACGTaGCTCTTGCCTACACCACTG | + |
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Preference number: 4 (lower is better) Translates to: AQTDPTPLGLMLVSCFLHNRRPT*LLPTPL Trigger: CAGTGGTGTAGGCAAGAGTCACGTGGGGCGTCTGTT...ATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CCA 90 bp | CACAGACAGAGAAGCTGTCCCCACCTCGTGGCCTCTAAGCTAAGGAGGCATTCACATGGTCCCTTGGCCTaGGGCTCTAGGCTAGGATGG | + |
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Preference number: 4 (lower is better) Translates to: HRQRSCPHLVASKLRRHSHGPLA*GSRLGW Trigger: CCATCCTAGCCTAGAGCCCCAGGCCAAGGGACCATG...TGAATGCCTCCTTAGCTTAGAGGCCACGAGGTGGGGACAGCTTCTCTGTCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CCA 90 bp | CACAGACAGAGAAGCTGTCCCCACCTCGTGGCCTCTAAGCTAAGGAGGCATTCATCTTGCCTACACCACTaGGCCCGTGCAGTGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: HRQRSCPHLVASKLRRHSSCLHH*ARAVPG Trigger: TCCTGGCACTGCACGGGCCCAGTGGTGTAGGCAAGA...TGAATGCCTCCTTAGCTTAGAGGCCACGAGGTGGGGACAGCTTCTCTGTCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR TCA 90 bp | GCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCGGGTCGGCACTTCCGTaGGGTTTCTGGGTAGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: ATRWQHRHGQSTKKPPFCGSALP*GFWVEN Trigger: GTTCTCTACCCAGAAACCTCACGGAAGTGCCGACCC...GCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR GCA 90 bp | CCCTATCACATGTCTCTGGGATATGATGGACATAGTGGGAGCTGGGGGTATGGGACTGGGCCCGTGCAGTaGCAGGAGCAAGGGATGACT | + |
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Preference number: 4 (lower is better) Translates to: PYHMSLGYDGHSGSWGYGTGPVQ*QEQGMT Trigger: AGTCATCCCTTGCTCCTGGCACTGCACGGGCCCAGT...CCCATACCCCCAGCTCCCACTATGTCCATCATATCCCAGAGACATGTGATAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR CAA 72 bp | CAGCACAGACTGACCCCACCCCACTGGGCCTCATGCTaGTTTCCTGCTTCCTACATCGAGTCAGCCTCAAAG | + |
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Preference number: 4 (lower is better) Translates to: QHRLTPPHWASC*FPASYIESASK Trigger: CTTTGAGGCTGACTCGATGTAGGAAGCAGGAAACAAGCATGAGGCCCAGTGGGGTGGGGTCAGTCTGTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR GCA 90 bp | AGGGGCCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGACACCACTGGGCCCGTaGAGTGCCAGGAGCAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: RGLLGIILQELNSIQTQQTPLGP*SARSKG Trigger: TCCCTTGCTCCTGGCACTGCACGGGCCCAGTGGTGT...CTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGGCCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR GCA 90 bp | GGGGTGAAGAGGACGGACGTGGAGCTCAGAGCTAAGCCACTGCATCAGCCTCCCATCCGTGACGCATTTTaGAGCACAAAGTGTGTGATC | + |
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Preference number: 4 (lower is better) Translates to: GVKRTDVELRAKPLHQPPIRDAF*STKCVI Trigger: GATCACACACTTTGTGCTGCAAAATGCGTCACGGAT...GGGAGGCTGATGCAGTGGCTTAGCTCTGAGCTCCACGTCCGTCCTCTTCACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR TCA 90 bp | TCCTCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACACTGCCAGGAGCAAGGGATaGCTGTGCACATGTGTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SSLIASSVTTSCVPSSHTARSKG*LCTCVA Trigger: GGCTACACATGTGCACAGTCATCCCTTGCTCCTGGC...AGTGTGGCTTGAGGGCACACAGGAAGTGGTGACACTAGAAGCGATTAGAGAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR TCA 90 bp | GAGGAGATGCTGCTCGGGTTTGTACCCTCACTTAGTCGCTCTGTAGATGGTAAGGCTCTCGAAGACTGGTaGGTAACTCCTGGGCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: EEMLLGFVPSLSRSVDGKALEDW*VTPGLE Trigger: CTCCAGCCCAGGAGTTACTCACCAGTCTTCGAGAGC...CTTACCATCTACAGAGCGACTAAGTGAGGGTACAAACCCGAGCAGCATCTCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR GCA 90 bp | CACGGCCAGAGTACTAAGAAGCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGGCCCCACGTGACTCTTaGCTACACCACTGGGCCCGT | + |
|
Preference number: 4 (lower is better) Translates to: HGQSTKKPPFCLANSKQMAPRDS*LHHWAR Trigger: ACGGGCCCAGTGGTGTAGGCAAGAGTCACGTGGGGC...CATTTGCTTGGAATTTGCAAGGCAGAAAGGAGGCTTCTTAGTACTCTGGCCGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CCA 90 bp | CTTGGGGACAAGTCACCTGACATCCTTCCTGTTTTCTTCAACAGTTCCGATTGCGCGGCCCACAGCAGCTaGCTGTCCAAACACAGAACG | + |
|
Preference number: 4 (lower is better) Translates to: LGDKSPDILPVFFNSSDCAAHSS*LSKHRT Trigger: CGTTCTGTGTTTGGACAGCCAGCTGCTGTGGGCCGC...GCAATCGGAACTGTTGAAGAAAACAGGAAGGATGTCAGGTGACTTGTCCCCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR GCA 90 bp | GTGCAGCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAGAAGCCTCCTTTATCGTGCATGGTACTaGAGAACCAAAGCACCATCT | + |
|
Preference number: 4 (lower is better) Translates to: VQPQDGSTDTARVLRSLLYRAWY*RTKAPS Trigger: AGATGGTGCTTTGGTTCTGCAGTACCATGCACGATA...AAGGAGGCTTCTTAGTACTCTGGCCGTGTCTGTGCTGCCATCTTGTGGCTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CCA 90 bp | TCCTCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACACTATGGCGTTGAGAACCTaGAACCCCACAATGGCTACA | + |
|
Preference number: 4 (lower is better) Translates to: SSLIASSVTTSCVPSSHTMALRT*NPTMAT Trigger: TGTAGCCATTGTGGGGTTCCAGGTTCTCAACGCCAT...AGTGTGGCTTGAGGGCACACAGGAAGTGGTGACACTAGAAGCGATTAGAGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| 3UTR CAA 72 bp | CCTTTCTGCCTTGCAAATTCCAAGCAAATGGAGAGGTaGAACCTAGGACTGCCAAAGGCTACAGGGAACCTC | + |
|
Preference number: 4 (lower is better) Translates to: PFCLANSKQMER*NLGLPKATGNL Trigger: GAGGTTCCCTGTAGCCTTTGGCAGTCCTAGGTTCAACCTCTCCATTTGCTTGGAATTTGCAAGGCAGAAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR TCA 90 bp | ATCTACCATAACCCTGGCTACTTCCTAGGGTTATGGGAAGCCCTATCACATGTCGATTCTCAATGGCGTTaGGAACCTGGAACCCCACAA | + |
|
Preference number: 4 (lower is better) Translates to: IYHNPGYFLGLWEALSHVDSQWR*EPGTPQ Trigger: TTGTGGGGTTCCAGGTTCTCAACGCCATTGAGAATC...GACATGTGATAGGGCTTCCCATAACCCTAGGAAGTAGCCAGGGTTATGGTAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR GCA 90 bp | CCAGAGCATCTGAAGAATTCCATGATCTACTCACTGGCTTGCAGACATCTAACTCTCTGCCAGATGTTCTaGCAGTGCCTGCTCAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: PEHLKNSMIYSLACRHLTLCQMF*QCLLRK Trigger: TTTCCTGAGCAGGCACTGGCAGAACATCTGGCAGAG...AGTTAGATGTCTGCAAGCCAGTGAGTAGATCATGGAATTCTTCAGATGCTCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 90 bp | GCCGGTGGGCCCAAGTGTCCCTGTCCCAGAGTCCGGCTCAGTGCCTaGCTGCAAGAGGCGCCTCTTGCGCAGGACGCAGACTCGGCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: AGGPKCPCPRVRLSA*LQEAPLAQDADSAA Trigger: CGCCGCCGAGTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTCTGGGACAGGGACACTTGGGCCCACCGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 90 bp | GCACTGCGCGAAAGTGGCGCGCCAACAGACGCCCCACGTGACTCTTaGCTACACCACTGGGCCCGTGCAGTGCCAGGAGCAAGGGATGAC | + |
|
Preference number: 5 (lower is better) Translates to: ALRESGAPTDAPRDS*LHHWARAVPGARDD Trigger: GTCATCCCTTGCTCCTGGCACTGCACGGGCCCAGTGGTGTAGGCAAGAGTCACGTGGGGCGTCTGTTGGCGCGCCACTTTCGCGCAGTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS GCA 90 bp | CTTCTCCTCGGCCTCAGCCTGTGCCACCACATCTGCCACTCGCTGTaGCAGCTCCTTCCGGCAGTCCTGAACCGGGCGTGGCTCTGGACA | + |
|
Preference number: 5 (lower is better) Translates to: LLLGLSLCHHICHSL*QLLPAVLNRAWLWT Trigger: TGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTGGCACAGCGAGTGGCAGATGTGGTGGCACAGGCTGAGGCCGAGGAGAAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS CCA 90 bp | AGCCAGGTAGTCTCGCAGCAGGGCCATGATGCGGCCCACAGCAGCTaGCTGTCCAAACACAGAACGCTGCAGCGCCTTCTCCAGCCCGTC | + |
|
Preference number: 5 (lower is better) Translates to: SQVVSQQGHDAAHSS*LSKHRTLQRLLQPV Trigger: GACGGGCTGGAGAAGGCGCTGCAGCGTTCTGTGTTTGGACAGCCAGCTGCTGTGGGCCGCATCATGGCCCTGCTGCGAGACTACCTGGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 90 bp | CTCATCCAGGACCAAGAGAGGGGTCTTCTCCTCGGCCTCAGCCTGTaGCACCACATCTGCCACTCGCTGTGCCAGCTCCTTCCGGCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: LIQDQERGLLLGLSL*HHICHSLCQLLPAV Trigger: GACTGCCGGAAGGAGCTGGCACAGCGAGTGGCAGATGTGGTGGCACAGGCTGAGGCCGAGGAGAAGACCCCTCTCTTGGTCCTGGATGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS GCA 90 bp | ACATCCGGCTTGTCCAGTAGCAGGAAGGGCACGATGGCTGCAGTGTaGCACAGAGGGTGTTCTCGGGCCAGGAGCTCTCGAAGACTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: TSGLSSSRKGTMAAV*HRGCSRARSSRRLV Trigger: CACCAGTCTTCGAGAGCTCCTGGCCCGAGAACACCCTCTGTGGCACACTGCAGCCATCGTGCCCTTCCTGCTACTGGACAAGCCGGATGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 90 bp | TGCCACTCGCTGTGCCAGCTCCTTCCGGCAGTCCTGAACCGGGCGTaGCTCTGGACAGTGATATCGTGCATGGTACTGCAGAACCAAAGC | + |
|
Preference number: 5 (lower is better) Translates to: CHSLCQLLPAVLNRA*LWTVISCMVLQNQS Trigger: GCTTTGGTTCTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTGGCACAGCGAGTGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS GCA 90 bp | CTACAAGAAGCAGCAGACAACGCTGTGCACGACTCTGCCGCTCTGTaGGGGGTCGGCACTTCCGTGAGGTTTCTGGGTAGAGAACTACCC | + |
|
Preference number: 5 (lower is better) Translates to: LQEAADNAVHDSAAL*GVGTSVRFLGRELP Trigger: GGGTAGTTCTCTACCCAGAAACCTCACGGAAGTGCCGACCCCGCACAGAGCGGCAGAGTCGTGCACAGCGTTGTCTGCTGCTTCTTGTAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 90 bp | CTTCCGGCAGTCCTGAACCGGGCGTGGCTCTGGACAGTGATATCGTaGATGGTACTGCAGAACCAAAGCACCATCTTCCAGCACTGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: LPAVLNRAWLWTVIS*MVLQNQSTIFQHCA Trigger: CGCGCAGTGCTGGAAGATGGTGCTTTGGTTCTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS CCA 90 bp | TCGCTGTGCCAGCTCCTTCCGGCAGTCCTGAACCGGGCGTGGCTCTaGACAGTGATATCGTGCATGGTACTGCAGAACCAAAGCACCATC | + |
|
Preference number: 5 (lower is better) Translates to: SLCQLLPAVLNRAWL*TVISCMVLQNQSTI Trigger: GATGGTGCTTTGGTTCTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTGGCACAGCGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS TCA 90 bp | TCTCGAAGACTGGTGAGTAACTCCTGGGCTGGAGATTCCTCAGTCTaGGTACTGCCTGCGCTATGGCGGAGTGGGGGCAACATCCGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: SRRLVSNSWAGDSSV*VLPALWRSGGNIRD Trigger: GTCACGGATGTTGCCCCCACTCCGCCATAGCGCAGGCAGTACTCAGACTGAGGAATCTCCAGCCCAGGAGTTACTCACCAGTCTTCGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS TCA 90 bp | TGTGCCACAGAGGGTGTTCTCGGGCCAGGAGCTCTCGAAGACTGGTaGGTAACTCCTGGGCTGGAGATTCCTCAGTCTGAGTACTGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: CATEGVLGPGALEDW*VTPGLEIPQSEYCL Trigger: CAGGCAGTACTCAGACTGAGGAATCTCCAGCCCAGGAGTTACTCACCAGTCTTCGAGAGCTCCTGGCCCGAGAACACCCTCTGTGGCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 90 bp | ATATCGTGCATGGTACTGCAGAACCAAAGCACCATCTTCCAGCACTaGGCGAAAGTGGCGCGCCAACAGACGCCCCACGTGACTCTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: ISCMVLQNQSTIFQH*AKVARQQTPHVTLA Trigger: GGCAAGAGTCACGTGGGGCGTCTGTTGGCGCGCCACTTTCGCGCAGTGCTGGAAGATGGTGCTTTGGTTCTGCAGTACCATGCACGATAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS GCA 90 bp | CTGCCTGCGCTATGGCGGAGTGGGGGCAACATCCGTGACGCATTTTaGAGCACAAAGTGTGTGATCTCTATACCACCAGCGCCACTTAGG | + |
|
Preference number: 5 (lower is better) Translates to: LPALWRSGGNIRDAF*STKCVISIPPAPLR Trigger: CCTAAGTGGCGCTGGTGGTATAGAGATCACACACTTTGTGCTGCAAAATGCGTCACGGATGTTGCCCCCACTCCGCCATAGCGCAGGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 90 bp | CTAGAAGTCAGCTCTGTCAGGCTGTCGAAGGTGAAGAATTTAGGTTaGTCTAGGTCGGCACGTAGAGTGCCCAAGCTGCCGGTGGGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: LEVSSVRLSKVKNLG*SRSARRVPKLPVGP Trigger: TGGGCCCACCGGCAGCTTGGGCACTCTACGTGCCGACCTAGACCAACCTAAATTCTTCACCTTCGACAGCCTGACAGAGCTGACTTCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 90 bp | ATAGCATTGTGGAAATGGTGCGAACGCTGTGGCTGCAGGAGGTCGTaGAGCTCATCTAGCAGCGCAGGTGGCAAGAGTTCAGCCTCATCC | + |
|
Preference number: 5 (lower is better) Translates to: IALWKWCERCGCRRS*SSSSSAGGKSSASS Trigger: GGATGAGGCTGAACTCTTGCCACCTGCGCTGCTAGATGAGCTCCACGACCTCCTGCAGCCACAGCGTTCGCACCATTTCCACAATGCTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CAA 90 bp | TTTGCTATGGACTCAACCGCTGTCACTCCAGAGCCAGGGAAGGGAAGGGGCCAGTTAGCTACTACCTGCTaGCAGCCGGTGATGGCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: FAMDSTAVTPEPGKGRGQLATTC*QPVMAN Trigger: ATTTGCCATCACCGGCTGCAAGCAGGTAGTAGCTAA...CTGGCCCCTTCCCTTCCCTGGCTCTGGAGTGACAGCGGTTGAGTCCATAGCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CAA 90 bp | TCTCTGGGATATGATGGACATAGTGGGAGCTGGGGGTATGGGGAAGACTCCATATCCTCTCTGAAGCAGTaGACCACATCCGGCTTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: SLGYDGHSGSWGYGEDSISSLKQ*TTSGLS Trigger: GGACAAGCCGGATGTGGTCAACTGCTTCAGAGAGGA...TATGGAGTCTTCCCCATACCCCCAGCTCCCACTATGTCCATCATATCCCAGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS-3UTR CAA 90 bp | CCTTCTTGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGGTCATTTGACCACATCCGGCTaGTCCAGTAGCAGGAAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: PSWHNPARTEQHPNSAGHLTTSG*SSSRKG Trigger: GCCCTTCCTGCTACTGGACAAGCCGGATGTGGTCAA...ATGACCTGCTGAGTTTGGATGCTGTTCAGTTCTTGCAGGATTATGCCAAGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CAA 72 bp | GAGTCCGGCTCAGTGCCTGGCTGCAAGAGGCGCCTCTaGCGCAGGACGCAGACTCGGCGGCGCAGACGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: ESGSVPGCKRRL*RRTQTRRRRRS Trigger: GCTCCGTCTGCGCCGCCGAGTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTC 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | AGTCCGGCTCAGTGCCTGGCTGCAAGAGGCGCCTCTTaGGCAGGACGCAGACTCGGCGGCGCAGACGGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: SPAQCLAARGAS*AGRRLGGADGA Trigger: TGCTCCGTCTGCGCCGCCGAGTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACT 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | TGGGCCCAAGTGTCCCTGTCCCAGAGTCCGGCTCAGTaGCTGGCTGCAAGAGGCGCCTCTTGCGCAGGACGC | + |
|
Preference number: 6 (lower is better) Translates to: WAQVSLSQSPAQ*LAARGASCAGR Trigger: GCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTCTGGGACAGGGACACTTGGGCCCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | AGTGTCCCTGTCCCAGAGTCCGGCTCAGTGCCTGGCTaGAAGAGGCGCCTCTTGCGCAGGACGCAGACTCGG | + |
|
Preference number: 6 (lower is better) Translates to: SVPVPESGSVPG*KRRLLRRTQTR Trigger: CCGAGTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTCTGGGACAGGGACACT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 72 bp | CCCAAGTGTCCCTGTCCCAGAGTCCGGCTCAGTGCCTaGCTGCAAGAGGCGCCTCTTGCGCAGGACGCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: PKCPCPRVRLSA*LQEAPLAQDAD Trigger: GTCTGCGTCCTGCGCAAGAGGCGCCTCTTGCAGCCAGGCACTGAGCCGGACTCTGGGACAGGGACACTTGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 72 bp | GGTCTAGGTCGGCACGTAGAGTGCCCAAGCTGCCGGTaGGCCCAAGTGTCCCTGTCCCAGAGTCCGGCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: GLGRHVECPSCR*AQVSLSQSPAQ Trigger: CTGAGCCGGACTCTGGGACAGGGACACTTGGGCCCACCGGCAGCTTGGGCACTCTACGTGCCGACCTAGACC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CAA 72 bp | AGCACGGCGCGCACTGGCGCTATCACACATGGTCCCTaGGCCTGGGGCTCTAGGCTAGGATGGCTGCGGTCC | + |
|
Preference number: 6 (lower is better) Translates to: STARTGAITHGP*AWGSRLGWLRS Trigger: GGACCGCAGCCATCCTAGCCTAGAGCCCCAGGCCAAGGGACCATGTGTGATAGCGCCAGTGCGCGCCGTGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000137920.2 |
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| CDS GCA 72 bp | GAAAGTGGCGCGCCAACAGACGCCCCACGTGACTCTTaGCTACACCACTGGGCCCGTGCAGTGCCAGGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: ESGAPTDAPRDS*LHHWARAVPGA Trigger: TGCTCCTGGCACTGCACGGGCCCAGTGGTGTAGGCAAGAGTCACGTGGGGCGTCTGTTGGCGCGCCACTTTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS CCA 72 bp | GTCTCGCAGCAGGGCCATGATGCGGCCCACAGCAGCTaGCTGTCCAAACACAGAACGCTGCAGCGCCTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: VSQQGHDAAHSS*LSKHRTLQRLL Trigger: GAGAAGGCGCTGCAGCGTTCTGTGTTTGGACAGCCAGCTGCTGTGGGCCGCATCATGGCCCTGCTGCGAGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | GCAGCAGACAACGCTGTGCACGACTCTGCCGCTCTGTaGGGGGTCGGCACTTCCGTGAGGTTTCTGGGTAGA | + |
|
Preference number: 6 (lower is better) Translates to: AADNAVHDSAAL*GVGTSVRFLGR Trigger: TCTACCCAGAAACCTCACGGAAGTGCCGACCCCGCACAGAGCGGCAGAGTCGTGCACAGCGTTGTCTGCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | GACCAAGAGAGGGGTCTTCTCCTCGGCCTCAGCCTGTaGCACCACATCTGCCACTCGCTGTGCCAGCTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: DQERGLLLGLSL*HHICHSLCQLL Trigger: AAGGAGCTGGCACAGCGAGTGGCAGATGTGGTGGCACAGGCTGAGGCCGAGGAGAAGACCCCTCTCTTGGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS CCA 72 bp | CCAACAGACGCCCCACGTGACTCTTGCCTACACCACTaGGCCCGTGCAGTGCCAGGAGCAAGGGATGACTGT | + |
|
Preference number: 6 (lower is better) Translates to: PTDAPRDSCLHH*ARAVPGARDDC Trigger: ACAGTCATCCCTTGCTCCTGGCACTGCACGGGCCCAGTGGTGTAGGCAAGAGTCACGTGGGGCGTCTGTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS CCA 72 bp | CCACATCCGGCTTGTCCAGTAGCAGGAAGGGCACGATaGCTGCAGTGTGCCACAGAGGGTGTTCTCGGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: PHPACPVAGRAR*LQCATEGVLGP Trigger: TGGCCCGAGAACACCCTCTGTGGCACACTGCAGCCATCGTGCCCTTCCTGCTACTGGACAAGCCGGATGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS TCA 72 bp | ACGACTCTGCCGCTCTGTGCGGGGTCGGCACTTCCGTaGGGTTTCTGGGTAGAGAACTACCCGACTACGCCT | + |
|
Preference number: 6 (lower is better) Translates to: TTLPLCAGSALP*GFWVENYPTTP Trigger: AGGCGTAGTCGGGTAGTTCTCTACCCAGAAACCTCACGGAAGTGCCGACCCCGCACAGAGCGGCAGAGTCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | CCCCACAATGGCTACAAGAAGCAGCAGACAACGCTGTaGACGACTCTGCCGCTCTGTGCGGGGTCGGCACTT | + |
|
Preference number: 6 (lower is better) Translates to: PHNGYKKQQTTL*TTLPLCAGSAL Trigger: AAGTGCCGACCCCGCACAGAGCGGCAGAGTCGTGCACAGCGTTGTCTGCTGCTTCTTGTAGCCATTGTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | TTGTCCAGTAGCAGGAAGGGCACGATGGCTGCAGTGTaGCACAGAGGGTGTTCTCGGGCCAGGAGCTCTCGA | + |
|
Preference number: 6 (lower is better) Translates to: LSSSRKGTMAAV*HRGCSRARSSR Trigger: TCGAGAGCTCCTGGCCCGAGAACACCCTCTGTGGCACACTGCAGCCATCGTGCCCTTCCTGCTACTGGACAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 72 bp | CTGTGCCAGCTCCTTCCGGCAGTCCTGAACCGGGCGTaGCTCTGGACAGTGATATCGTGCATGGTACTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: LCQLLPAVLNRA*LWTVISCMVLQ Trigger: CTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTGGCACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS GCA 72 bp | ATGGTACTGCAGAACCAAAGCACCATCTTCCAGCACTaGGCGAAAGTGGCGCGCCAACAGACGCCCCACGTG | + |
|
Preference number: 6 (lower is better) Translates to: MVLQNQSTIFQH*AKVARQQTPHV Trigger: CACGTGGGGCGTCTGTTGGCGCGCCACTTTCGCGCAGTGCTGGAAGATGGTGCTTTGGTTCTGCAGTACCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS TCA 72 bp | GAGGGTGTTCTCGGGCCAGGAGCTCTCGAAGACTGGTaGGTAACTCCTGGGCTGGAGATTCCTCAGTCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: EGVLGPGALEDW*VTPGLEIPQSE Trigger: CTCAGACTGAGGAATCTCCAGCCCAGGAGTTACTCACCAGTCTTCGAGAGCTCCTGGCCCGAGAACACCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 72 bp | CAGCTCCTTCCGGCAGTCCTGAACCGGGCGTGGCTCTaGACAGTGATATCGTGCATGGTACTGCAGAACCAA | + |
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Preference number: 6 (lower is better) Translates to: QLLPAVLNRAWL*TVISCMVLQNQ Trigger: TTGGTTCTGCAGTACCATGCACGATATCACTGTCCAGAGCCACGCCCGGTTCAGGACTGCCGGAAGGAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081869.7 ENSMUST00000142857.2 |
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| CDS CCA 72 bp | TGGAAATGGTGCGAACGCTGTGGCTGCAGGAGGTCGTaGAGCTCATCTAGCAGCGCAGGTGGCAAGAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: WKWCERCGCRRS*SSSSSAGGKSS Trigger: TGAACTCTTGCCACCTGCGCTGCTAGATGAGCTCCACGACCTCCTGCAGCCACAGCGTTCGCACCATTTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CAA 72 bp | GCCATCTCCTCTCTGAAGCAGTTGACCACATCCGGCTaGTCCAGTAGCAGGAAGGGCACGATGGCTGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: AISSLKQLTTSG*SSSRKGTMAAV Trigger: CACTGCAGCCATCGTGCCCTTCCTGCTACTGGACAAGCCGGATGTGGTCAACTGCTTCAGAGAGGAGATGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 72 bp | AGCTCTGTCAGGCTGTCGAAGGTGAAGAATTTAGGTTaGTCTAGGTCGGCACGTAGAGTGCCCAAGCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: SSVRLSKVKNLG*SRSARRVPKLP Trigger: CGGCAGCTTGGGCACTCTACGTGCCGACCTAGACCAACCTAAATTCTTCACCTTCGACAGCCTGACAGAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS TCA 72 bp | ACTGCCTGCGCTATGGCGGAGTGGGGGCAACATCCGTaGCGCATTTTGCAGCACAAAGTGTGTGATCTCTAT | + |
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Preference number: 6 (lower is better) Translates to: TACAMAEWGQHP*RILQHKVCDLY Trigger: ATAGAGATCACACACTTTGTGCTGCAAAATGCGTCACGGATGTTGCCCCCACTCCGCCATAGCGCAGGCAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | CTATGGCGGAGTGGGGGCAACATCCGTGACGCATTTTaGAGCACAAAGTGTGTGATCTCTATACCACCAGCG | + |
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Preference number: 6 (lower is better) Translates to: LWRSGGNIRDAF*STKCVISIPPA Trigger: CGCTGGTGGTATAGAGATCACACACTTTGTGCTGCAAAATGCGTCACGGATGTTGCCCCCACTCCGCCATAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS GCA 72 bp | GGCTTGTGCTGTAAGAGGTTGACCTTAGCTACTACCTaGTTGCAGCCGGTGATGGCAAATTCATGTCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: GLCCKRLTLATT*LQPVMANSCPA Trigger: TGCTGGACATGAATTTGCCATCACCGGCTGCAAGCAGGTAGTAGCTAAGGTCAACCTCTTACAGCACAAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS TCA 72 bp | GCAACATCCGTGACGCATTTTGCAGCACAAAGTGTGTaGTCTCTATACCACCAGCGCCACTTAGGAGTACAT | + |
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Preference number: 6 (lower is better) Translates to: ATSVTHFAAQSV*SLYHQRHLGVH Trigger: ATGTACTCCTAAGTGGCGCTGGTGGTATAGAGATCACACACTTTGTGCTGCAAAATGCGTCACGGATGTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CAA 72 bp | TTGTGCTGTAAGAGGTTGACCTTAGCTACTACCTGCTaGCAGCCGGTGATGGCAAATTCATGTCCAGCAACA | + |
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Preference number: 6 (lower is better) Translates to: LCCKRLTLATTC*QPVMANSCPAT Trigger: TGTTGCTGGACATGAATTTGCCATCACCGGCTGCAAGCAGGTAGTAGCTAAGGTCAACCTCTTACAGCACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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| CDS CCA 72 bp | GCATTATCGTCTAGATTCTCAATGGCGTTGAGAACCTaGAACCCCACAATGGCTACAAGAAGCAGCAGACAA | + |
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Preference number: 6 (lower is better) Translates to: ALSSRFSMALRT*NPTMATRSSRQ Trigger: TTGTCTGCTGCTTCTTGTAGCCATTGTGGGGTTCCAGGTTCTCAACGCCATTGAGAATCTAGACGATAATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081869.7 |
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