Pregenerated sensors for TOR1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026849Ensembl transcript IDs: ENSMUST00000028200.9
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTaGCATCTGTGGTCCCTACAGCGCGGTCACCTGCAGGCTCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: GAAFISGGSRSFRSM*HLWSLQRGHLQALR Trigger: CCTCAGAGCCTGCAGGTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| 3UTR CCA 72 bp | GGAGGCTCCAGGAGCTTCAGGTCCATGTTGCATCTGTaGTCCCTACAGCGCGGTCACCTGCAGGCTCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: GGSRSFRSMLHL*SLQRGHLQALR Trigger: CCTCAGAGCCTGCAGGTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGCCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| 3UTR GCA 72 bp | TCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTTaGATCTGTGGTCCCTACAGCGCGGTCACCTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SSLEAPGASGPC*ICGPYSAVTCR Trigger: CCTGCAGGTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| 3UTR CCA 72 bp | TCACAAGTCCAGAATGCTGGGAGCTGCTTTCATCTCTaGAGGCTCCAGGAGCTTCAGGTCCATGTTGCATCT | + |
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Preference number: 3 (lower is better) Translates to: SQVQNAGSCFHL*RLQELQVHVAS Trigger: AGATGCAACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGGACTTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CCA 90 bp | GCTCCAGGAGCTTCAGGTCCATGTTGCATCTGTGGTCCCTACAGCGCGGTCACCCTGAGGCTCCGCATCTaGCCGCAGCACTCGGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: APGASGPCCICGPYSAVTLRLRI*PQHSAK Trigger: CTTCGCCGAGTGCTGCGGCCAGATGCGGAGCCTCAG...GGTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR TCA 90 bp | GGCTCCAGGAGCTTCAGGTCCATGTTGCATCTGTGGTCCCTACAGCGCGGTCACCGCTCACGTTGCCTCTaGTCCACATCTGTAACTGGT | + |
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Preference number: 4 (lower is better) Translates to: GSRSFRSMLHLWSLQRGHRSRCL*STSVTG Trigger: ACCAGTTACAGATGTGGATCAGAGGCAACGTGAGCG...GTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| 3UTR CAA 72 bp | TTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTaGCATCTGTGGTCCCTACAGCGCGGTCACCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: FISGGSRSFRSM*HLWSLQRGHLQ Trigger: CTGCAGGTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR TCA 90 bp | AAAAATCACAAGTCCAGAATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGGGGCCAGACTCAGGCTaGTGGGCTCCACCGCACGAA | + |
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Preference number: 4 (lower is better) Translates to: KNHKSRMLGAAFISGGSRGPDSG*WAPPHE Trigger: TTCGTGCGGTGGAGCCCATCAGCCTGAGTCTGGCCC...CCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGGACTTGTGATTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR GCA 90 bp | GCTCCAGGAGCTTCAGGTCCATGTTGCATCTGTGGTCCCTACAGCGCGGTCACCTCAATGAGGCTGCTGTaGCAGAAGCCACTGTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: APGASGPCCICGPYSAVTSMRLL*QKPLFL Trigger: CAAGAACAGTGGCTTCTGGCACAGCAGCCTCATTGA...GGTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR TCA 90 bp | AAATCACAAGTCCAGAATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCCAGAGCCACGTCTGTaGTCCTCTCTGCCCCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: KSQVQNAGSCFHLWRLQEPEPRL*SSLPLH Trigger: ATGCAGGGGCAGAGAGGATCACAGACGTGGCTCTGG...CTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGGACTTGTGATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR GCA 90 bp | CCAGAATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCAGTCTGTGATCCTCTCTaGCCCTGCATTGCTGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: PECWELLSSLEAPGASGPVCDPL*PCIAEE Trigger: TTCCTCAGCAATGCAGGGGCAGAGAGGATCACAGAC...TGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CCA 90 bp | CCAGGAGCTTCAGGTCCATGTTGCATCTGTGGTCCCTACAGCGCGGTCACCTGCAGACCTTCTCCTCCTTaGGGAAGAACGTCATCTCTT | + |
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Preference number: 4 (lower is better) Translates to: PGASGPCCICGPYSAVTCRPSPP*GRTSSL Trigger: AAGAGATGACGTTCTTCCCCAAGGAGGAGAAGGTCT...GCAGGTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR TCA 90 bp | GAATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTCACTGTTCTTGTTATTaGAGACCGACACGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: ECWELLSSLEAPGASGPCHCSCY*RPTRPG Trigger: CCCTGGCCGTGTCGGTCTTCAATAACAAGAACAGTG...ACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR GCA 90 bp | AAAAATCACAAGTCCAGAATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGCGAAGTTTTTGCCGGTaGCCGTCCACCCGTGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: KNHKSRMLGAAFISGGSRRSFCR*PSTRAE Trigger: CTCTGCACGGGTGGACGGGCACCGGCAAAAACTTCG...CCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGGACTTGTGATTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR GCA 90 bp | CCAGAATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATCGATGAGGCCGGCATaGATCTTGTCCATCTCATCA | + |
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Preference number: 4 (lower is better) Translates to: PECWELLSSLEAPGASGPSMRPA*ILSISS Trigger: TGATGAGATGGACAAGATGCATGCCGGCCTCATCGA...TGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR GCA 90 bp | CCTGCAGGCTCTGAGGAGCAGAAACAGGATTCTCCCGCTAACCTCAGCAGGAAGATGCACATTTTCAGGTaGTTGTACTCCAGGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PAGSEEQKQDSPANLSRKMHIFR*LYSRGR Trigger: CCTGCCCCTGGAGTACAAGCACCTGAAAATGTGCAT...CTTCCTGCTGAGGTTAGCGGGAGAATCCTGTTTCTGCTCCTCAGAGCCTGCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR TCA 90 bp | CTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTTGCATCCATCTCATCAAAGATaGAGATGGAGCGAGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: LGAAFISGGSRSFRSMLHPSHQR*RWSEHR Trigger: CCTGTGCTCGCTCCATCTTCATCTTTGATGAGATGG...ATGCAACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR TCA 90 bp | GCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTTGCATCTGTGGTCCACTGCATCTCCACTCTaGTGCACATTTTCAGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: AFISGGSRSFRSMLHLWSTASPL*CTFSGA Trigger: AGCACCTGAAAATGTGCATCAGAGTGGAGATGCAGT...GGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CCA 90 bp | AAAAATCACAAGTCCAGAATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGGGGGGAAGTGTAGCGTaGCCACAAACAGGTGTACAT | + |
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Preference number: 4 (lower is better) Translates to: KNHKSRMLGAAFISGGSRGGSVA*PQTGVH Trigger: ATGTACACCTGTTTGTGGCCACGCTACACTTCCCCC...CCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGGACTTGTGATTTTT 51% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CAA 90 bp | AGTGTCCAAGCCTCTTCTGGGGAGGAGCGGACTGACACAGCCCTGGCAGCCGGCACAGTCTTGCAGCCCTaGTCAGAGAAGACCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SVQASSGEERTDTALAAGTVLQP*SEKTFS Trigger: GGAGAAGGTCTTCTCTGACAAGGGCTGCAAGACTGT...GCCGGCTGCCAGGGCTGTGTCAGTCCGCTCCTCCCCAGAAGAGGCTTGGACACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CAA 90 bp | AATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTTGCACAGGCGCTCACGTaGCCTCTGATCCACATCTGT | + |
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Preference number: 5 (lower is better) Translates to: NAGSCFHLWRLQELQVHVAQALT*PLIHIC Trigger: ACAGATGTGGATCAGAGGCAACGTGAGCGCCTGTGC...AACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS TCA 90 bp | GTACATAGTCACTGTTCAGTCCGCCCTCGTAAATATTCTCCGCGATaGTCTTGCTGGCGAAGTTTTTGCCGGTGCCCGTCCACCCGTGCA | + |
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Preference number: 5 (lower is better) Translates to: VHSHCSVRPRKYSPR*SCWRSFCRCPSTRA Trigger: TGCACGGGTGGACGGGCACCGGCAAAAACTTCGCCAGCAAGATCATCGCGGAGAATATTTACGAGGGCGGACTGAACAGTGACTATGTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS CCA 90 bp | GAGCGAGCACAGGCGCTCACGTTGCCTCTGATCCACATCTGTAACTaGTCCTTATACTGTGTGATGTTAGAGGCGTGGGGGAAGTGTAGC | + |
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Preference number: 5 (lower is better) Translates to: ERAQALTLPLIHICN*SLYCVMLEAWGKCS Trigger: GCTACACTTCCCCCACGCCTCTAACATCACACAGTATAAGGACCAGTTACAGATGTGGATCAGAGGCAACGTGAGCGCCTGTGCTCGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CAA 90 bp | CTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTTGCATTTCTTGGGCTTCGGGTaGCTTAGGAAACCAGACACG | + |
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Preference number: 5 (lower is better) Translates to: LGAAFISGGSRSFRSMLHFLGFG*LRKPDT Trigger: CGTGTCTGGTTTCCTAAGCAACCCGAAGCCCAAGAA...ATGCAACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CAA 90 bp | CCTGCAGGCTCTGAGGAGCAGAAACAGGATTCTCCCGCTAACCTCAGCAGGAAGAGGCCGGCATGCATCTaGTCCATCTCATCAAAGATG | + |
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Preference number: 5 (lower is better) Translates to: PAGSEEQKQDSPANLSRKRPACI*SISSKM Trigger: CATCTTTGATGAGATGGACAAGATGCATGCCGGCCT...CTTCCTGCTGAGGTTAGCGGGAGAATCCTGTTTCTGCTCCTCAGAGCCTGCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CAA 90 bp | AATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATGTTCTCTCTGCCCCTGCATaGCTGAGGAAGATGAAGATG | + |
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Preference number: 5 (lower is better) Translates to: NAGSCFHLWRLQELQVHVLSAPA*LRKMKM Trigger: CATCTTCATCTTCCTCAGCAATGCAGGGGCAGAGAG...AACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CAA 90 bp | CCAGAATGCTGGGAGCTGCTTTCATCTCTGGAGGCTCCAGGAGCTTCAGGTCCATCCATGTCTCTGAGCTaGATTTCTTCCCTCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: PECWELLSSLEAPGASGPSMSLS*ISSLCF Trigger: GAAGCAGAGGGAAGAAATCAAGCTCAGAGACATGGA...TGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CAA 90 bp | CTGCAGGCTCTGAGGAGCAGAAACAGGATTCTCCCGCTAACCTCAGCAGGAAGTCAGAAGCCACTGTTCTaGTTATTGAAGACCGACACG | + |
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Preference number: 5 (lower is better) Translates to: LQALRSRNRILPLTSAGSQKPLF*LLKTDT Trigger: CGTGTCGGTCTTCAATAACAAGAACAGTGGCTTCTG...ACTTCCTGCTGAGGTTAGCGGGAGAATCCTGTTTCTGCTCCTCAGAGCCTGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS-3UTR CAA 90 bp | CTGCAGGCTCTGAGGAGCAGAAACAGGATTCTCCCGCTAACCTCAGCAGGAAGTTGCTGTCCAAAGAGCTaGTTATCCAGATCTTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: LQALRSRNRILPLTSAGSCCPKS*LSRSFC Trigger: GCAGAAAGATCTGGATAACAAGCTCTTTGGACAGCA...ACTTCCTGCTGAGGTTAGCGGGAGAATCCTGTTTCTGCTCCTCAGAGCCTGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS CAA 72 bp | CCCGTCCACCCGTGCAGAGAGAGGGTAAGGGGCTTCTaGGGCTTCGGGTTGCTTAGGAAACCAGACACGGCG | + |
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Preference number: 6 (lower is better) Translates to: PVHPCRERVRGF*GFGLLRKPDTA Trigger: CGCCGTGTCTGGTTTCCTAAGCAACCCGAAGCCCAAGAAGCCCCTTACCCTCTCTCTGCACGGGTGGACGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS CAA 72 bp | CGGTCAATGAGGCTGCTGTGCCAGAAGCCACTGTTCTaGTTATTGAAGACCGACACGGCCAGGGCGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: RSMRLLCQKPLF*LLKTDTARAGS Trigger: GGAGCCCGCCCTGGCCGTGTCGGTCTTCAATAACAAGAACAGTGGCTTCTGGCACAGCAGCCTCATTGACCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS CAA 90 bp | ATGAGGTTCCGGTCAATGAGGCTGCTGTGCCAGAAGCCACTGTTCTaGTTATTGAAGACCGACACGGCCAGGGCGGGCTCCATGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: MRFRSMRLLCQKPLF*LLKTDTARAGSMSL Trigger: CAGAGACATGGAGCCCGCCCTGGCCGTGTCGGTCTTCAATAACAAGAACAGTGGCTTCTGGCACAGCAGCCTCATTGACCGGAACCTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS TCA 72 bp | CACTGTTCAGTCCGCCCTCGTAAATATTCTCCGCGATaGTCTTGCTGGCGAAGTTTTTGCCGGTGCCCGTCC | + |
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Preference number: 6 (lower is better) Translates to: HCSVRPRKYSPR*SCWRSFCRCPS Trigger: GGACGGGCACCGGCAAAAACTTCGCCAGCAAGATCATCGCGGAGAATATTTACGAGGGCGGACTGAACAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS CCA 72 bp | CAGGCGCTCACGTTGCCTCTGATCCACATCTGTAACTaGTCCTTATACTGTGTGATGTTAGAGGCGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: QALTLPLIHICN*SLYCVMLEAWG Trigger: CCCCCACGCCTCTAACATCACACAGTATAAGGACCAGTTACAGATGTGGATCAGAGGCAACGTGAGCGCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS CAA 72 bp | TGCAGAGAGAGGGTAAGGGGCTTCTTGGGCTTCGGGTaGCTTAGGAAACCAGACACGGCGTTTAGGATGACT | + |
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Preference number: 6 (lower is better) Translates to: CRERVRGFLGFG*LRKPDTAFRMT Trigger: AGTCATCCTAAACGCCGTGTCTGGTTTCCTAAGCAACCCGAAGCCCAAGAAGCCCCTTACCCTCTCTCTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS TCA 72 bp | CATCTACTTCATAGCCTCGGGACTGCATCTCCACTCTaGTGCACATTTTCAGGTGCTTGTACTCCAGGGGCA | + |
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Preference number: 6 (lower is better) Translates to: HLLHSLGTASPL*CTFSGACTPGA Trigger: TGCCCCTGGAGTACAAGCACCTGAAAATGTGCATCAGAGTGGAGATGCAGTCCCGAGGCTATGAAGTAGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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| CDS CCA 72 bp | TGTAACTGGTCCTTATACTGTGTGATGTTAGAGGCGTaGGGGAAGTGTAGCGTGGCCACAAACAGGTGTACA | + |
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Preference number: 6 (lower is better) Translates to: CNWSLYCVMLEA*GKCSVATNRCT Trigger: TGTACACCTGTTTGTGGCCACGCTACACTTCCCCCACGCCTCTAACATCACACAGTATAAGGACCAGTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028200.9 |
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