RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TOPORS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036822

Ensembl transcript IDs: ENSMUST00000042575.7

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGGCCGTTGGAAGCCAGCTCCCGCCGGCTCAGTAAGCTCGGCCGGTaGCGGCAGGATCCGCGAAGGCGTACCCGGCGGCTTCGGCGCCTC +
Preference number: 5 (lower is better)
Translates to: GPLEASSRRLSKLGR*RQDPRRRTRRLRRL
Trigger: GAGGCGCCGAAGCCGCCGGGTACGCCTTCGCGGATCCTGCCGCCACCGGCCGAGCTTACTGAGCCGGCGGGAGCTGGCTTCCAACGGCCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp GCTGAGCCTCTTCACTGGTACCTTCCAAATGCCGGGTTTTGTACTTaGGTTTCCCTCCGGGCTTCTCATTTCTCACCCGGTCGGGCCCGG +
Preference number: 5 (lower is better)
Translates to: AEPLHWYLPNAGFCT*VSLRASHFSPGRAR
Trigger: CCGGGCCCGACCGGGTGAGAAATGAGAAGCCCGGAGGGAAACGCAAGTACAAAACCCGGCATTTGGAAGGTACCAGTGAAGAGGCTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 90 bp GACCGGGAATCTGAACTCCTCGACCTTCCTCCCTTCCTGTGTCGATaGTTATATGGGGAGCATACCCTGTCACCTCTTGTAGATGAGCTG +
Preference number: 5 (lower is better)
Translates to: DRESELLDLPPFLCR*LYGEHTLSPLVDEL
Trigger: CAGCTCATCTACAAGAGGTGACAGGGTATGCTCCCCATATAACCATCGACACAGGAAGGGAGGAAGGTCGAGGAGTTCAGATTCCCGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp ATCTTCTTTTGCCATGATCACTGCTACGAGACCTCGATCTACTGGTaGTTCCACTACTTAGAGAAAGTGTCTGGCTCCTCCGGGACCAGC +
Preference number: 5 (lower is better)
Translates to: IFFCHDHCYETSIYW*FHYLEKVSGSSGTS
Trigger: GCTGGTCCCGGAGGAGCCAGACACTTTCTCTAAGTAGTGGAAGCACCAGTAGATCGAGGTCTCGTAGCAGTGATCATGGCAAAAGAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 90 bp CGAGACCTCGATCTACTGGTGCTTCCACTACTTAGAGAAAGTGTCTaGCTCCTCCGGGACCAGCTGCTATCTCTAGTTCTGGATCTCTTT +
Preference number: 5 (lower is better)
Translates to: RDLDLLVLPLLRESV*LLRDQLLSLVLDLF
Trigger: AAAGAGATCCAGAACTAGAGATAGCAGCTGGTCCCGGAGGAGCCAGACACTTTCTCTAAGTAGTGGAAGCACCAGTAGATCGAGGTCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 90 bp GTGATCTTCTTTTGCCATGATCACTGCTACGAGACCTCGATCTACTaGTGCTTCCACTACTTAGAGAAAGTGTCTGGCTCCTCCGGGACC +
Preference number: 5 (lower is better)
Translates to: VIFFCHDHCYETSIY*CFHYLEKVSGSSGT
Trigger: GGTCCCGGAGGAGCCAGACACTTTCTCTAAGTAGTGGAAGCACCAGTAGATCGAGGTCTCGTAGCAGTGATCATGGCAAAAGAAGATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp GGACCAGCTGCTATCTCTAGTTCTGGATCTCTTTTTGTCCTTTCTTaGTCTCGGCCTGCTACTACTCTCCCTGCTTCTGGACCTCTTGTT +
Preference number: 5 (lower is better)
Translates to: GPAAISSSGSLFVLS*SRPATTLPASGPLV
Trigger: AACAAGAGGTCCAGAAGCAGGGAGAGTAGTAGCAGGCCGAGAGCAAGAAAGGACAAAAAGAGATCCAGAACTAGAGATAGCAGCTGGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp GTCACAATTCTCCACAGTTTGGCTGGTGCTCAAGTCATCAGCAAGTaGTGTAACGTCACAGTCCTTGTCCAGGACACCAAGCTCATCTTC +
Preference number: 5 (lower is better)
Translates to: VTILHSLAGAQVISK*CNVTVLVQDTKLIF
Trigger: GAAGATGAGCTTGGTGTCCTGGACAAGGACTGTGACGTTACAGCACTTGCTGATGACTTGAGCACCAGCCAAACTGTGGAGAATTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp AAAGGTGCTTTCTTCTCTTACATCAAGAGTTTGTTCAACTGGGACTaGCGGCGAGTCACAATTCTCCACAGTTTGGCTGGTGCTCAAGTC +
Preference number: 5 (lower is better)
Translates to: KGAFFSYIKSLFNWD*RRVTILHSLAGAQV
Trigger: GACTTGAGCACCAGCCAAACTGTGGAGAATTGTGACTCGCCGGCAGTCCCAGTTGAACAAACTCTTGATGTAAGAGAAGAAAGCACCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp AGCGATCTCGATTTCTGCTTCGTGATCTTCTTTTGCCATGATCACTaGTACGAGACCTCGATCTACTGGTGCTTCCACTACTTAGAGAAA +
Preference number: 5 (lower is better)
Translates to: SDLDFCFVIFFCHDH*YETSIYWCFHYLEK
Trigger: TTTCTCTAAGTAGTGGAAGCACCAGTAGATCGAGGTCTCGTAGCAGTGATCATGGCAAAAGAAGATCACGAAGCAGAAATCGAGATCGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp CATATAGGACACTTAGAATCAGGAGACGCATCAGCTGGTACTGTCTaGTGCAATTTGCTAGTGCCAGCTTTAGGTGAAAAGTTGTCCATT +
Preference number: 5 (lower is better)
Translates to: HIGHLESGDASAGTV*CNLLVPALGEKLSI
Trigger: AATGGACAACTTTTCACCTAAAGCTGGCACTAGCAAATTGCAGCAGACAGTACCAGCTGATGCGTCTCCTGATTCTAAGTGTCCTATATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS TCA 90 bp TCCCACGGTGCCTGCCTAACAGTAGATGCATTCATATCTAGCTCTTaGGTTTCAGCCTCATCTGGTGATATTGTAATGACTGAAGAATCT +
Preference number: 5 (lower is better)
Translates to: SHGACLTVDAFISSS*VSASSGDIVMTEES
Trigger: AGATTCTTCAGTCATTACAATATCACCAGATGAGGCTGAAACTCAAGAGCTAGATATGAATGCATCTACTGTTAGGCAGGCACCGTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp ATAGGACACTTAGAATCAGGAGACGCATCAGCTGGTACTGTCTGCTaGAATTTGCTAGTGCCAGCTTTAGGTGAAAAGTTGTCCATTTTA +
Preference number: 5 (lower is better)
Translates to: IGHLESGDASAGTVC*NLLVPALGEKLSIL
Trigger: TAAAATGGACAACTTTTCACCTAAAGCTGGCACTAGCAAATTGCAGCAGACAGTACCAGCTGATGCGTCTCCTGATTCTAAGTGTCCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp TTCTTAAATAATAGCGATCTCGATTTCTGCTTCGTGATCTTCTTTTaGCATGATCACTGCTACGAGACCTCGATCTACTGGTGCTTCCAC +
Preference number: 5 (lower is better)
Translates to: FLNNSDLDFCFVIFF*HDHCYETSIYWCFH
Trigger: GTGGAAGCACCAGTAGATCGAGGTCTCGTAGCAGTGATCATGGCAAAAGAAGATCACGAAGCAGAAATCGAGATCGCTATTATTTAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 90 bp ACATTACTCATGATGATGTGCTGGACGATATTGACTAGCGAACCATaGGCTCCAAAAAGCACAGTAAGTTCACGCTTTAACCAAGGAACT +
Preference number: 5 (lower is better)
Translates to: TLLMMMCWTILTSEP*APKSTVSSRFNQGT
Trigger: AGTTCCTTGGTTAAAGCGTGAACTTACTGTGCTTTTTGGAGCCCATGGTTCGCTAGTCAATATCGTCCAGCACATCATCATGAGTAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS TCA 90 bp TCATCTGTAGTAGTTGGCCCCCTTAATGCCATTTGTCTCATAAATTaGGGAATGTCAACATCTCTAGGTCTTGTCGAAATGCCTAACCCT +
Preference number: 5 (lower is better)
Translates to: SSVVVGPLNAICLIN*GMSTSLGLVEMPNP
Trigger: AGGGTTAGGCATTTCGACAAGACCTAGAGATGTTGACATTCCTCAATTTATGAGACAAATGGCATTAAGGGGGCCAACTACTACAGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS TCA 90 bp CCAAAAAGCACAGTAAGTTCACGCTTTAACCAAGGAACTAATCTGTaGAGGCAAGCTGGATTTCTACGGAAGAACTCAGCTGAAATATCC +
Preference number: 5 (lower is better)
Translates to: PKSTVSSRFNQGTNL*RQAGFLRKNSAEIS
Trigger: GGATATTTCAGCTGAGTTCTTCCGTAGAAATCCAGCTTGCCTTCACAGATTAGTTCCTTGGTTAAAGCGTGAACTTACTGTGCTTTTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp GACACCAAGCTCATCTTCGATTGTGACAACATCTTTAGTTTCAAATaGTCCATCTTGTATAGGCTGTGGAAGACTGCCATTGCTACATTC +
Preference number: 5 (lower is better)
Translates to: DTKLIFDCDNIFSFK*SILYRLWKTAIATF
Trigger: GAATGTAGCAATGGCAGTCTTCCACAGCCTATACAAGATGGAGCATTTGAAACTAAAGATGTTGTCACAATCGAAGATGAGCTTGGTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 90 bp TGTGACAACATCTTTAGTTTCAAATGCTCCATCTTGTATAGGCTGTaGAAGACTGCCATTGCTACATTCAATACCCGCCTTTACTTCAGA +
Preference number: 5 (lower is better)
Translates to: CDNIFSFKCSILYRL*KTAIATFNTRLYFR
Trigger: TCTGAAGTAAAGGCGGGTATTGAATGTAGCAATGGCAGTCTTCCACAGCCTATACAAGATGGAGCATTTGAAACTAAAGATGTTGTCACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 90 bp CTGTCGATGGTTATAACCACCGGCGACCGTGAAGTATTATCTCCATaGTGTTTCTTATGCTTCTTCTTATGTTTCTTCTTTTTCTTCTTA +
Preference number: 5 (lower is better)
Translates to: LSMVITTGDREVLSP*CFLCFFLCFFFFFL
Trigger: TAAGAAGAAAAAGAAGAAACATAAGAAGAAGCATAAGAAACACCATGGAGATAATACTTCACGGTCGCCGGTGGTTATAACCATCGACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp ATTTGCTTCCATAATTATTTCTTAAATAATAGCGATCTCGATTTCTaGTTCGTGATCTTCTTTTGCCATGATCACTGCTACGAGACCTCG +
Preference number: 5 (lower is better)
Translates to: ICFHNYFLNNSDLDF*FVIFFCHDHCYETS
Trigger: CGAGGTCTCGTAGCAGTGATCATGGCAAAAGAAGATCACGAAGCAGAAATCGAGATCGCTATTATTTAAGAAATAATTATGGAAGCAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 90 bp TCCTCCTCCTGTATGATGATTCATAGCCATCTCTGTCCTTGTTTCTaGTGTAGTAAGTGTATTCCCACTTATATTTGCTTCCATAATTAT +
Preference number: 5 (lower is better)
Translates to: SSSCMMIHSHLCPCF*CSKCIPTYICFHNY
Trigger: ATAATTATGGAAGCAAATATAAGTGGGAATACACTTACTACAGCAGAAACAAGGACAGAGATGGCTATGAATCATCATACAGGAGGAGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 72 bp GAAGCCAGCTCCCGCCGGCTCAGTAAGCTCGGCCGGTaGCGGCAGGATCCGCGAAGGCGTACCCGGCGGCTT +
Preference number: 6 (lower is better)
Translates to: EASSRRLSKLGR*RQDPRRRTRRL
Trigger: AAGCCGCCGGGTACGCCTTCGCGGATCCTGCCGCCACCGGCCGAGCTTACTGAGCCGGCGGGAGCTGGCTTC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp ATCTCCGAGGACGCGGTGGCAGGAACCGCTGGGCCGTaGGAAGCCAGCTCCCGCCGGCTCAGTAAGCTCGGC +
Preference number: 6 (lower is better)
Translates to: ISEDAVAGTAGP*EASSRRLSKLG
Trigger: GCCGAGCTTACTGAGCCGGCGGGAGCTGGCTTCCAACGGCCCAGCGGTTCCTGCCACCGCGTCCTCGGAGAT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS TCA 72 bp CTGTCCTTCCCTTTGGAAGTGAACTCCCGAGCCGGCTaGGCCTCTTCACTGGTACCTTCCAAATGCCGGGTT +
Preference number: 6 (lower is better)
Translates to: LSFPLEVNSRAG*ASSLVPSKCRV
Trigger: AACCCGGCATTTGGAAGGTACCAGTGAAGAGGCTCAGCCGGCTCGGGAGTTCACTTCCAAAGGGAAGGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 90 bp TGGCTCCTCCGGGACCAGCTGCTATCTCTAGTTCTGGATCTCTTTTaGTCCTTTCTTGCTCTCGGCCTGCTACTACTCTCCCTGCTTCTG +
Preference number: 6 (lower is better)
Translates to: WLLRDQLLSLVLDLF*SFLALGLLLLSLLL
Trigger: CAGAAGCAGGGAGAGTAGTAGCAGGCCGAGAGCAAGAAAGGACAAAAAGAGATCCAGAACTAGAGATAGCAGCTGGTCCCGGAGGAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp CTTCACTGGTACCTTCCAAATGCCGGGTTTTGTACTTaGGTTTCCCTCCGGGCTTCTCATTTCTCACCCGGT +
Preference number: 6 (lower is better)
Translates to: LHWYLPNAGFCT*VSLRASHFSPG
Trigger: ACCGGGTGAGAAATGAGAAGCCCGGAGGGAAACGCAAGTACAAAACCCGGCATTTGGAAGGTACCAGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp CTCCACAGTTTGGCTGGTGCTCAAGTCATCAGCAAGTaGTGTAACGTCACAGTCCTTGTCCAGGACACCAAG +
Preference number: 6 (lower is better)
Translates to: LHSLAGAQVISK*CNVTVLVQDTK
Trigger: CTTGGTGTCCTGGACAAGGACTGTGACGTTACAGCACTTGCTGATGACTTGAGCACCAGCCAAACTGTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp TCTTCACTGGTACCTTCCAAATGCCGGGTTTTGTACTaGCGTTTCCCTCCGGGCTTCTCATTTCTCACCCGG +
Preference number: 6 (lower is better)
Translates to: SSLVPSKCRVLY*RFPPGFSFLTR
Trigger: CCGGGTGAGAAATGAGAAGCCCGGAGGGAAACGCAAGTACAAAACCCGGCATTTGGAAGGTACCAGTGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp TGCCATGATCACTGCTACGAGACCTCGATCTACTGGTaGTTCCACTACTTAGAGAAAGTGTCTGGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: CHDHCYETSIYW*FHYLEKVSGSS
Trigger: GGAGGAGCCAGACACTTTCTCTAAGTAGTGGAAGCACCAGTAGATCGAGGTCTCGTAGCAGTGATCATGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 72 bp TCTGAACTCCTCGACCTTCCTCCCTTCCTGTGTCGATaGTTATATGGGGAGCATACCCTGTCACCTCTTGTA +
Preference number: 6 (lower is better)
Translates to: SELLDLPPFLCR*LYGEHTLSPLV
Trigger: TACAAGAGGTGACAGGGTATGCTCCCCATATAACCATCGACACAGGAAGGGAGGAAGGTCGAGGAGTTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 72 bp GATCTACTGGTGCTTCCACTACTTAGAGAAAGTGTCTaGCTCCTCCGGGACCAGCTGCTATCTCTAGTTCTG +
Preference number: 6 (lower is better)
Translates to: DLLVLPLLRESV*LLRDQLLSLVL
Trigger: CAGAACTAGAGATAGCAGCTGGTCCCGGAGGAGCCAGACACTTTCTCTAAGTAGTGGAAGCACCAGTAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp CGGGACCAGCTGCTATCTCTAGTTCTGGATCTCTTTTaGTCCTTTCTTGCTCTCGGCCTGCTACTACTCTCC +
Preference number: 6 (lower is better)
Translates to: RDQLLSLVLDLF*SFLALGLLLLS
Trigger: GGAGAGTAGTAGCAGGCCGAGAGCAAGAAAGGACAAAAAGAGATCCAGAACTAGAGATAGCAGCTGGTCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp TTAGGCTCCGGGTCCTCCTCCTCCTCCTCTTGTGTTTaGTCTCTCTGTCTGATGATCTGCTATCTGAAAAGC +
Preference number: 6 (lower is better)
Translates to: LGSGSSSSSSCV*SLCLMICYLKS
Trigger: GCTTTTCAGATAGCAGATCATCAGACAGAGAGACAAAACACAAGAGGAGGAGGAGGAGGACCCGGAGCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp TCTACACTTAGGCTCCGGGTCCTCCTCCTCCTCCTCTaGTGTTTTGTCTCTCTGTCTGATGATCTGCTATCT +
Preference number: 6 (lower is better)
Translates to: STLRLRVLLLLL*CFVSLSDDLLS
Trigger: AGATAGCAGATCATCAGACAGAGAGACAAAACACAAGAGGAGGAGGAGGAGGACCCGGAGCCTAAGTGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 90 bp TCTCTACACTTAGGCTCCGGGTCCTCCTCCTCCTCCTCTTGTGTTTaGTCTCTCTGTCTGATGATCTGCTATCTGAAAAGCTGTCACTCT +
Preference number: 6 (lower is better)
Translates to: SLHLGSGSSSSSSCV*SLCLMICYLKSCHS
Trigger: AGAGTGACAGCTTTTCAGATAGCAGATCATCAGACAGAGAGACAAAACACAAGAGGAGGAGGAGGAGGACCCGGAGCCTAAGTGTAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp GCTATCTCTAGTTCTGGATCTCTTTTTGTCCTTTCTTaGTCTCGGCCTGCTACTACTCTCCCTGCTTCTGGA +
Preference number: 6 (lower is better)
Translates to: AISSSGSLFVLS*SRPATTLPASG
Trigger: TCCAGAAGCAGGGAGAGTAGTAGCAGGCCGAGAGCAAGAAAGGACAAAAAGAGATCCAGAACTAGAGATAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 72 bp TTTTGCCATGATCACTGCTACGAGACCTCGATCTACTaGTGCTTCCACTACTTAGAGAAAGTGTCTGGCTCC +
Preference number: 6 (lower is better)
Translates to: FCHDHCYETSIY*CFHYLEKVSGS
Trigger: GGAGCCAGACACTTTCTCTAAGTAGTGGAAGCACCAGTAGATCGAGGTCTCGTAGCAGTGATCATGGCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp CTCAAGTCATCAGCAAGTGCTGTAACGTCACAGTCCTaGTCCAGGACACCAAGCTCATCTTCGATTGTGACA +
Preference number: 6 (lower is better)
Translates to: LKSSASAVTSQS*SRTPSSSSIVT
Trigger: TGTCACAATCGAAGATGAGCTTGGTGTCCTGGACAAGGACTGTGACGTTACAGCACTTGCTGATGACTTGAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp CACTTAGAATCAGGAGACGCATCAGCTGGTACTGTCTaGTGCAATTTGCTAGTGCCAGCTTTAGGTGAAAAG +
Preference number: 6 (lower is better)
Translates to: HLESGDASAGTV*CNLLVPALGEK
Trigger: CTTTTCACCTAAAGCTGGCACTAGCAAATTGCAGCAGACAGTACCAGCTGATGCGTCTCCTGATTCTAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp TTCTTCTCTTACATCAAGAGTTTGTTCAACTGGGACTaGCGGCGAGTCACAATTCTCCACAGTTTGGCTGGT +
Preference number: 6 (lower is better)
Translates to: FFSYIKSLFNWD*RRVTILHSLAG
Trigger: ACCAGCCAAACTGTGGAGAATTGTGACTCGCCGGCAGTCCCAGTTGAACAAACTCTTGATGTAAGAGAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 72 bp GCATATAGGACACTTAGAATCAGGAGACGCATCAGCTaGTACTGTCTGCTGCAATTTGCTAGTGCCAGCTTT +
Preference number: 6 (lower is better)
Translates to: AYRTLRIRRRIS*YCLLQFASASF
Trigger: AAAGCTGGCACTAGCAAATTGCAGCAGACAGTACCAGCTGATGCGTCTCCTGATTCTAAGTGTCCTATATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 72 bp CTAACCCTTCAAACAGCACTCCACTATCTGGTGGCGTaGTTGTTCTCCTACTTACAGTACTACTGGGTGAAT +
Preference number: 6 (lower is better)
Translates to: LTLQTALHYLVA*LFSYLQYYWVN
Trigger: ATTCACCCAGTAGTACTGTAAGTAGGAGAACAACCACGCCACCAGATAGTGGAGTGCTGTTTGAAGGGTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp TCAGGAGACGCATCAGCTGGTACTGTCTGCTGCAATTaGCTAGTGCCAGCTTTAGGTGAAAAGTTGTCCATT +
Preference number: 6 (lower is better)
Translates to: SGDASAGTVCCN*LVPALGEKLSI
Trigger: AATGGACAACTTTTCACCTAAAGCTGGCACTAGCAAATTGCAGCAGACAGTACCAGCTGATGCGTCTCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp AATAGCGATCTCGATTTCTGCTTCGTGATCTTCTTTTaGCATGATCACTGCTACGAGACCTCGATCTACTGG +
Preference number: 6 (lower is better)
Translates to: NSDLDFCFVIFF*HDHCYETSIYW
Trigger: CCAGTAGATCGAGGTCTCGTAGCAGTGATCATGGCAAAAGAAGATCACGAAGCAGAAATCGAGATCGCTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp GAATCAAAGGGCTGTTTACACAGTGGGCATTCGGCTTaGTTTTTGGACCACTCTTGTACACAGCGAAAACAG +
Preference number: 6 (lower is better)
Translates to: ESKGCLHSGHSA*FLDHSCTQRKQ
Trigger: CTGTTTTCGCTGTGTACAAGAGTGGTCCAAAAACAAAGCCGAATGCCCACTGTGTAAACAGCCCTTTGATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp ACCCTTCAAACAGCACTCCACTATCTGGTGGCGTGGTaGTTCTCCTACTTACAGTACTACTGGGTGAATAAA +
Preference number: 6 (lower is better)
Translates to: TLQTALHYLVAW*FSYLQYYWVNK
Trigger: TTTATTCACCCAGTAGTACTGTAAGTAGGAGAACAACCACGCCACCAGATAGTGGAGTGCTGTTTGAAGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 90 bp TTAGTTTCAAATGCTCCATCTTGTATAGGCTGTGGAAGACTGCCATaGCTACATTCAATACCCGCCTTTACTTCAGACTCTCCATCGCTG +
Preference number: 6 (lower is better)
Translates to: LVSNAPSCIGCGRLP*LHSIPAFTSDSPSL
Trigger: CAGCGATGGAGAGTCTGAAGTAAAGGCGGGTATTGAATGTAGCAATGGCAGTCTTCCACAGCCTATACAAGATGGAGCATTTGAAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 72 bp ATGATGATGTGCTGGACGATATTGACTAGCGAACCATaGGCTCCAAAAAGCACAGTAAGTTCACGCTTTAAC +
Preference number: 6 (lower is better)
Translates to: MMMCWTILTSEP*APKSTVSSRFN
Trigger: GTTAAAGCGTGAACTTACTGTGCTTTTTGGAGCCCATGGTTCGCTAGTCAATATCGTCCAGCACATCATCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp AAGGGCTGTTTACACAGTGGGCATTCGGCTTTGTTTTaGGACCACTCTTGTACACAGCGAAAACAGAACTTA +
Preference number: 6 (lower is better)
Translates to: KGCLHSGHSALF*DHSCTQRKQNL
Trigger: TAAGTTCTGTTTTCGCTGTGTACAAGAGTGGTCCAAAAACAAAGCCGAATGCCCACTGTGTAAACAGCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp CGAGTAACATTACTCATGATGATGTGCTGGACGATATaGACTAGCGAACCATGGGCTCCAAAAAGCACAGTA +
Preference number: 6 (lower is better)
Translates to: RVTLLMMMCWTI*TSEPWAPKSTV
Trigger: TACTGTGCTTTTTGGAGCCCATGGTTCGCTAGTCAATATCGTCCAGCACATCATCATGAGTAATGTTACTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 72 bp AATGCTCCATCTTGTATAGGCTGTGGAAGACTGCCATaGCTACATTCAATACCCGCCTTTACTTCAGACTCT +
Preference number: 6 (lower is better)
Translates to: NAPSCIGCGRLP*LHSIPAFTSDS
Trigger: AGAGTCTGAAGTAAAGGCGGGTATTGAATGTAGCAATGGCAGTCTTCCACAGCCTATACAAGATGGAGCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 90 bp CACTTAGAATCAGGAGACGCATCAGCTGGTACTGTCTGCTGCAATTaGCTAGTGCCAGCTTTAGGTGAAAAGTTGTCCATTTTAAATTCC +
Preference number: 6 (lower is better)
Translates to: HLESGDASAGTVCCN*LVPALGEKLSILNS
Trigger: GGAATTTAAAATGGACAACTTTTCACCTAAAGCTGGCACTAGCAAATTGCAGCAGACAGTACCAGCTGATGCGTCTCCTGATTCTAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS TCA 72 bp ACAGTAAGTTCACGCTTTAACCAAGGAACTAATCTGTaGAGGCAAGCTGGATTTCTACGGAAGAACTCAGCT +
Preference number: 6 (lower is better)
Translates to: TVSSRFNQGTNL*RQAGFLRKNSA
Trigger: AGCTGAGTTCTTCCGTAGAAATCCAGCTTGCCTTCACAGATTAGTTCCTTGGTTAAAGCGTGAACTTACTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 90 bp ATAGAATCAAAGGGCTGTTTACACAGTGGGCATTCGGCTTTGTTTTaGGACCACTCTTGTACACAGCGAAAACAGAACTTATGTAGGCAA +
Preference number: 6 (lower is better)
Translates to: IESKGCLHSGHSALF*DHSCTQRKQNLCRQ
Trigger: TTGCCTACATAAGTTCTGTTTTCGCTGTGTACAAGAGTGGTCCAAAAACAAAGCCGAATGCCCACTGTGTAAACAGCCCTTTGATTCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 90 bp CTCATCTTCGATTGTGACAACATCTTTAGTTTCAAATGCTCCATCTaGTATAGGCTGTGGAAGACTGCCATTGCTACATTCAATACCCGC +
Preference number: 6 (lower is better)
Translates to: LIFDCDNIFSFKCSI*YRLWKTAIATFNTR
Trigger: GCGGGTATTGAATGTAGCAATGGCAGTCTTCCACAGCCTATACAAGATGGAGCATTTGAAACTAAAGATGTTGTCACAATCGAAGATGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS TCA 72 bp GCCTGCCTAACAGTAGATGCATTCATATCTAGCTCTTaGGTTTCAGCCTCATCTGGTGATATTGTAATGACT +
Preference number: 6 (lower is better)
Translates to: ACLTVDAFISSS*VSASSGDIVMT
Trigger: AGTCATTACAATATCACCAGATGAGGCTGAAACTCAAGAGCTAGATATGAATGCATCTACTGTTAGGCAGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CCA 72 bp ATCTTTAGTTTCAAATGCTCCATCTTGTATAGGCTGTaGAAGACTGCCATTGCTACATTCAATACCCGCCTT +
Preference number: 6 (lower is better)
Translates to: IFSFKCSILYRL*KTAIATFNTRL
Trigger: AAGGCGGGTATTGAATGTAGCAATGGCAGTCTTCCACAGCCTATACAAGATGGAGCATTTGAAACTAAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 90 bp ACCAGCACGATAAAGAGTTCGCCTGAAATTAATAATATCTTGTTCTaGAATTTTCCGCAAAGATCTCTCATCTGTAGTAGTTGGCCCCCT +
Preference number: 6 (lower is better)
Translates to: TSTIKSSPEINNILF*NFPQRSLICSSWPP
Trigger: AGGGGGCCAACTACTACAGATGAGAGATCTTTGCGGAAAATTCAAGAACAAGATATTATTAATTTCAGGCGAACTCTTTATCGTGCTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp CTCATCTTCGATTGTGACAACATCTTTAGTTTCAAATaGTCCATCTTGTATAGGCTGTGGAAGACTGCCATT +
Preference number: 6 (lower is better)
Translates to: LIFDCDNIFSFK*SILYRLWKTAI
Trigger: AATGGCAGTCTTCCACAGCCTATACAAGATGGAGCATTTGAAACTAAAGATGTTGTCACAATCGAAGATGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS CAA 90 bp TCGAACACCAGCACGATAAAGAGTTCGCCTGAAATTAATAATATCTaGTTCTTGAATTTTCCGCAAAGATCTCTCATCTGTAGTAGTTGG +
Preference number: 6 (lower is better)
Translates to: SNTSTIKSSPEINNI*FLNFPQRSLICSSW
Trigger: CCAACTACTACAGATGAGAGATCTTTGCGGAAAATTCAAGAACAAGATATTATTAATTTCAGGCGAACTCTTTATCGTGCTGGTGTTCGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS TCA 72 bp TTCTTCTTCCTCGCATTTGTTCTTTCAGAAAAAGACTaGATTCTAAATTCTGGACTTGAAGACTGTCTAGAG +
Preference number: 6 (lower is better)
Translates to: FFFLAFVLSEKD*ILNSGLEDCLE
Trigger: CTCTAGACAGTCTTCAAGTCCAGAATTTAGAATTCAGTCTTTTTCTGAAAGAACAAATGCGAGGAAGAAGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7
CDS GCA 72 bp CATAATTATTTCTTAAATAATAGCGATCTCGATTTCTaGTTCGTGATCTTCTTTTGCCATGATCACTGCTAC +
Preference number: 6 (lower is better)
Translates to: HNYFLNNSDLDF*FVIFFCHDHCY
Trigger: GTAGCAGTGATCATGGCAAAAGAAGATCACGAAGCAGAAATCGAGATCGCTATTATTTAAGAAATAATTATG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042575.7