Pregenerated sensors for TOP1MT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000934Ensembl transcript IDs: ENSMUST00000000958.9
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGACCTCTTTCCACTGGTaGCCGGCTGGGGGCTCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: EKPQYCFTVRKNISAAKRTSFHW*PAGGSG Trigger: CCCTGAGCCCCCAGCCGGTCACCAGTGGAAAGAGGT...CCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | GAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGCCCTGGGCAGGGTCCTaGGGGCCTCAGCTCTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: EKPQYCFTVRKNISAAKRPWAGS*GPQLFP Trigger: TGGAAAGAGCTGAGGCCCGCAGGACCCTGCCCAGGG...CCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | AAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGCTTCTGCTTCTGCTCCCTaGGCAGGGTCCTGCGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: KTTILLHSEKEHFSGKEASASAP*AGSCGP Trigger: AGGCCCGCAGGACCCTGCCCAGGGAGCAGAAGCAGA...AGCCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | AGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGTGGGGTCCAGATAGTTaGGCTTGGCGGTGCCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: RKTTILLHSEKEHFSGKEWGPDS*AWRCPG Trigger: CCCTGGGCACCGCCAAGCTCAACTATCTGGACCCCA...CTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | GAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGATGGTTACAGAGGACTaGCACAGCCCGGTTCGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: EKPQYCFTVRKNISAAKRMVTED*HSPVRP Trigger: CGGGCGAACCGGGCTGTGGCAGTCCTCTGTAACCAT...CCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | TATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCTCTACAACGTGCTCCTaGCCACCTGCGGGCGCGTGC | + |
|
Preference number: 4 (lower is better) Translates to: YSRKTTILLHSEKEHFSGSTTCS*PPAGAC Trigger: GCACGCGCCCGCAGGTGGCCAGGAGCACGTTGTAGA...GCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | AGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGTCAGCACCCGCAGCTaGTCCTGCAGAGTGACAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RKTTILLHSEKEHFSGKEVSTRS*SCRVTE Trigger: CTCTGTCACTCTGCAGGAGCAGCTGCGGGTGCTGAC...CTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | CTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGGCTGCTCCTGCAGAGTaGCAGAGGCATTGTAGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: LEKPQYCFTVRKNISAAKAAPAE*QRHCRS Trigger: GGACCTACAATGCCTCTGTCACTCTGCAGGAGCAGC...CTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | AGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGAAGTACGGGCCCTTGTaGTCCAGCTGCCTCCACTTC | + |
|
Preference number: 4 (lower is better) Translates to: RKTTILLHSEKEHFSGKEKYGPL*SSCLHF Trigger: GAAGTGGAGGCAGCTGGAGCACAAGGGCCCGTACTT...CTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | AAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGCTTTTAGCTTCTGCTTCTaGTCCCTGGGCAGGGTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: KTTILLHSEKEHFSGKEAFSFCF*SLGRVL Trigger: CAGGACCCTGCCCAGGGAGCAGAAGCAGAAGCTAAA...AGCCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | AGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGAAGGAGTTCTGGATGTaGTCCACCCAGGCAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: RKTTILLHSEKEHFSGKEKEFWM*STQAAS Trigger: GCTGGCTGCCTGGGTGGAGCACATCCAGAACTCCTT...CTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | TATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAGGGGCTCGTAGGCTaGGGTGAAGTACGGGCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: YSRKTTILLHSEKEHFSGKGLVG*GEVRAL Trigger: AAGGGCCCGTACTTCACCCCAGCCTACGAGCCCCTT...GCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | AGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGCCACATCCTCTGGCATaGCCCTCCTCTTCAACATCC | + |
|
Preference number: 4 (lower is better) Translates to: RKTTILLHSEKEHFSGKEPHPLA*PSSSTS Trigger: GGATGTTGAAGAGGAGGGTCATGCCAGAGGATGTGG...CTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | GAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGAGGCAGCCAGCCACATaGCTGTGTTATCTGAGCGTA | + |
|
Preference number: 4 (lower is better) Translates to: EKPQYCFTVRKNISAAKRRQPAT*LCYLSV Trigger: TACGCTCAGATAACACAGTCATGTGGCTGGCTGCCT...CCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | AGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGACTTCCAGTCAGCCTaGTACTGGGCACGGATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: RKTTILLHSEKEHFSGKEDFQSA*YWARIL Trigger: CAAGATCCGTGCCCAGTATCAGGCTGACTGGAAGTC...CTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | GAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGTTGGGAACTGCTCTCTaGTGGTTACAGAGGACTGCC | + |
|
Preference number: 4 (lower is better) Translates to: EKPQYCFTVRKNISAAKRLGTAL*WLQRTA Trigger: GGCAGTCCTCTGTAACCATCAGAGAGCAGTTCCCAA...CCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | TCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAACCCTTGTGCTCCAGCTaGCTCCACTTCACACTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: SRKTTILLHSEKEHFSGKPLCSS*LHFTLL Trigger: GAGCAGTGTGAAGTGGAGGCAGCTGGAGCACAAGGG...TTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | CCGACATTTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTCCAGCTCTACAACGTaGTCCTGGCCACCTGCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: PTFYSRKTTILLHSEKEHSSSTT*SWPPAG Trigger: GCCCGCAGGTGGCCAGGAGCACGTTGTAGAGCTGGA...ATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAAATGTCGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGCCACTGGTGACCGGCTaGGGGCTCAGGGATCTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: FILEKPQYCFTVRKNISAPLVTG*GLRDLG Trigger: TCCAAGATCCCTGAGCCCCCAGCCGGTCACCAGTGG...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | ATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCATCTCCTCCTTGTCTGTaGCCTTCGCGCACAATCGGG | + |
|
Preference number: 4 (lower is better) Translates to: ILEKPQYCFTVRKNISAASPPCL*PSRTIG Trigger: CCCGATTGTGCGCGAAGGCCACAGACAAGGAGGAGA...TGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | GAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGGGTCCTTGTCTTCCATaGAGTGCTGAAGGTTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: EKPQYCFTVRKNISAAKRGPCLP*SAEGSG Trigger: TCCAGAACCTTCAGCACTTCATGGAAGACAAGGACC...CCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | TATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCTACACCAGGCGATGCTaGTCCTGGGGTCCAGATAGT | + |
|
Preference number: 4 (lower is better) Translates to: YSRKTTILLHSEKEHFSGYTRRC*SWGPDS Trigger: ACTATCTGGACCCCAGGATCAGCATCGCCTGGTGTA...GCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | AAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGCTGCTACCTCATACTTCTaGCAATCCATCTCCCCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KTTILLHSEKEHFSGKEAATSYF*QSISPF Trigger: GAAGGGGGAGATGGATTGGCAGAAGTATGAGGTAGC...AGCCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | AAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGCTTCAGTCTCTGCTTTCTaGAGCTCTACCTGTGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: KTTILLHSEKEHFSGKEASVSAF*SSTCAS Trigger: TGAGGCACAGGTAGAGCTGCAGAAAGCAGAGACTGA...AGCCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | GAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGTCTCAGGTCAGTCTCTaGTTTCTGCAGCTCTACCTG | + |
|
Preference number: 4 (lower is better) Translates to: EKPQYCFTVRKNISAAKRSQVSL*FLQLYL Trigger: CAGGTAGAGCTGCAGAAAGCAGAGACTGACCTGAGA...CCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | TATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAGGTCCGGAACACCTTaGCTGTCAGCCCTTCCATCA | + |
|
Preference number: 4 (lower is better) Translates to: YSRKTTILLHSEKEHFSGRSGTP*LSALPS Trigger: TGATGGAAGGGCTGACAGCCAAGGTGTTCCGGACCT...GCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | AAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGCTGCTCTTTCCAGGAAGTaGTTATGGATCTCCGTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KTTILLHSEKEHFSGKEAALSRK*LWISVK Trigger: CTTCACGGAGATCCATAAGCACTTCCTGGAAAGAGC...AGCCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | CTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGCCTTCCATCAAGTCCTaGAAGTGCTTGTTCAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LEKPQYCFTVRKNISAAKPSIKS*KCLFRL Trigger: CAGCCTGAACAAGCACTTGCAGGACTTGATGGAAGG...CTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGCTGCAGCTCTACCTGTaGCTCAGCCACCTGTGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: FILEKPQYCFTVRKNISALQLYL*LSHLCL Trigger: AAGGCACAGGTGGCTGAGGCACAGGTAGAGCTGCAG...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | AAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGCTAGTGCTTGTTCAGGCTaGAAGTGGTCAGTGCATCAA | + |
|
Preference number: 4 (lower is better) Translates to: KTTILLHSEKEHFSGKEASACSG*KWSVHQ Trigger: TTGATGCACTGACCACTTCCAGCCTGAACAAGCACT...AGCCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | GAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGAGGCTTCTTCATTTCTGGTaGCTTCCAGTCAGCCTGATA | + |
|
Preference number: 4 (lower is better) Translates to: EKPQYCFTVRKNISAAKRLLHFW*LPVSLI Trigger: TATCAGGCTGACTGGAAGTCACCAGAAATGAAGAAG...CCTCTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | CCGACATTTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATCCTCTTCCTTCTCATTaGCTGTCCGCAGTGCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: PTFYSRKTTILLHSEKEHPLPSH*LSAVPA Trigger: AGCTGGCACTGCGGACAGGCAATGAGAAGGAAGAGG...ATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAAATGTCGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | ATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAGCTGGAAGTGGTCAGTaGATCAAAGAGGTCATCCCT | + |
|
Preference number: 4 (lower is better) Translates to: ILEKPQYCFTVRKNISAAAGSGQ*IKEVIP Trigger: AGGGATGACCTCTTTGATGCACTGACCACTTCCAGC...TGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGTCAACATCCCCATCTTaGGATGGTCACCTCGGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: FILEKPQYCFTVRKNISASTSPS*DGHLGH Trigger: GTGGCCGAGGTGACCATCCCAAGATGGGGATGTTGA...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGTCTTCCTTTAGCTTCTaGTTCTGCTCCCTGGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: FILEKPQYCFTVRKNISASSFSF*FCSLGR Trigger: CCTGCCCAGGGAGCAGAAGCAGAAGCTAAAGGAAGA...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | TATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCGAAGGTCTTGGGAACTaGTCTCTGATGGTTACAGAG | + |
|
Preference number: 4 (lower is better) Translates to: YSRKTTILLHSEKEHFSGEGLGN*SLMVTE Trigger: CTCTGTAACCATCAGAGAGCAGTTCCCAAGACCTTC...GCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | TATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCGCTTATGGATCTCCGTaGAGTCACATTTGTCAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: YSRKTTILLHSEKEHFSGAYGSP*SHICQG Trigger: ACCTTGACAAATGTGACTTCACGGAGATCCATAAGC...GCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR TCA 90 bp | ATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAATCGTCGCTGCTTCTaGAGGAAACTTTTGGGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: ILEKPQYCFTVRKNISAANRRCF*RKLLGL Trigger: CAAACCCAAAAGTTTCCTTCAGAAGCAGCGACGATT...TGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | ATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCATCTGAAGGAAACTTTTaGGTTTGCTGTCCCCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: ILEKPQYCFTVRKNISAASEGNF*VCCPLS Trigger: TGAGAGGGGACAGCAAACCCAAAAGTTTCCTTCAGA...TGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR GCA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGTGCCTCAGCCACCTGTaGCTTCTTTGTCTCAATCTT | + |
|
Preference number: 4 (lower is better) Translates to: FILEKPQYCFTVRKNISACLSHL*LLCLNL Trigger: AAGATTGAGACAAAGAAGGCACAGGTGGCTGAGGCA...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGAATGACCACATCCTCTaGCATGACCCTCCTCTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: FILEKPQYCFTVRKNISANDHIL*HDPPLQ Trigger: TTGAAGAGGAGGGTCATGCCAGAGGATGTGGTCATT...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGTGTTCAGGCTGGAAGTaGTCAGTGCATCAAAGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: FILEKPQYCFTVRKNISACSGWK*SVHQRG Trigger: ACCTCTTTGATGCACTGACCACTTCCAGCCTGAACA...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CCA 90 bp | CCGACATTTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATACTTCTCGAAGGTCTTaGGAACTGCTCTCTGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: PTFYSRKTTILLHSEKEHTSRRS*ELLSDG Trigger: ACCATCAGAGAGCAGTTCCCAAGACCTTCGAGAAGT...ATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAAATGTCGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 90 bp | ATCCTTTCCCAAGAAGTCCAGCTCTACAACGTGCTCCTGGCCACCTaGGGGCGCGTGCAGTCGGATGTGCTCCACACGGAGCGAGCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: ILSQEVQLYNVLLAT*GRVQSDVLHTERAA Trigger: TGCTGCTCGCTCCGTGTGGAGCACATCCGACTGCACGCGCCCGCAGGTGGCCAGGAGCACGTTGTAGAGCTGGACTTCTTGGGAAAGGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 90 bp | CGGATGGAATCCTTTCCCAAGAAGTCCAGCTCTACAACGTGCTCCTaGCCACCTGCGGGCGCGTGCAGTCGGATGTGCTCCACACGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: RMESFPKKSSSTTCS*PPAGACSRMCSTRS Trigger: GCTCCGTGTGGAGCACATCCGACTGCACGCGCCCGCAGGTGGCCAGGAGCACGTTGTAGAGCTGGACTTCTTGGGAAAGGATTCCATCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 90 bp | AACTCCTGCTGCAGTTTCTCGGCCTCTTCCTTTAGCTTCTGCTTCTaGTCCCTGGGCAGGGTCCTGCGGGCCTCAGCTCTTTCCAGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: NSCCSFSASSFSFCF*SLGRVLRASALSRK Trigger: CTTCCTGGAAAGAGCTGAGGCCCGCAGGACCCTGCCCAGGGAGCAGAAGCAGAAGCTAAAGGAAGAGGCCGAGAAACTGCAGCAGGAGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 90 bp | GCTTGGCGGTGCCCAGGGCCACCTGCTTATTCTCCTCCTTGTCTGTaGCCTTCGCGCACAATCGGGCCAGCTGTTCTTCCAGCTTTAACA | + |
|
Preference number: 5 (lower is better) Translates to: AWRCPGPPAYSPPCL*PSRTIGPAVLPALT Trigger: TGTTAAAGCTGGAAGAACAGCTGGCCCGATTGTGCGCGAAGGCCACAGACAAGGAGGAGAATAAGCAGGTGGCCCTGGGCACCGCCAAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 90 bp | TGCTCCCTGGGCAGGGTCCTGCGGGCCTCAGCTCTTTCCAGGAAGTaGTTATGGATCTCCGTGAAGTCACATTTGTCAAGGTGTGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: CSLGRVLRASALSRK*LWISVKSHLSRCVM Trigger: CATCACACACCTTGACAAATGTGACTTCACGGAGATCCATAAGCACTTCCTGGAAAGAGCTGAGGCCCGCAGGACCCTGCCCAGGGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 90 bp | CTGGGCAGGGTCCTGCGGGCCTCAGCTCTTTCCAGGAAGTGCTTATaGATCTCCGTGAAGTCACATTTGTCAAGGTGTGTGATGAGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: LGRVLRASALSRKCL*ISVKSHLSRCVMSL Trigger: GAGGCTCATCACACACCTTGACAAATGTGACTTCACGGAGATCCATAAGCACTTCCTGGAAAGAGCTGAGGCCCGCAGGACCCTGCCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 90 bp | GGTGTCGGCCGTCTCGCCCTCTTCCTTCTCATTGCCTGTCCGCAGTaGCAGCTTATCAATAAAATAAAGGGCGACAGCCAGCTGTCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: GVGRLALFLLIACPQ*QLINKIKGDSQLSL Trigger: AAGAGACAGCTGGCTGTCGCCCTTTATTTTATTGATAAGCTGGCACTGCGGACAGGCAATGAGAAGGAAGAGGGCGAGACGGCCGACACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 90 bp | TTGGGTTTGCTGTCCCCTCTCATTCTCAGGTCAGTCTCTGCTTTCTaGAGCTCTACCTGTGCCTCAGCCACCTGTGCCTTCTTTGTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: LGLLSPLILRSVSAF*SSTCASATCAFFVS Trigger: TGAGACAAAGAAGGCACAGGTGGCTGAGGCACAGGTAGAGCTGCAGAAAGCAGAGACTGACCTGAGAATGAGAGGGGACAGCAAACCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 90 bp | TCTGGAACACGAGCTTCTCCACCGTCACGTGGTTCTTATAGCGGATaGAATCCTTTCCCAAGAAGTCCAGCTCTACAACGTGCTCCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: SGTRASPPSRGSYSG*NPFPRSPALQRAPG Trigger: GCCAGGAGCACGTTGTAGAGCTGGACTTCTTGGGAAAGGATTCCATCCGCTATAAGAACCACGTGACGGTGGAGAAGCTCGTGTTCCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 90 bp | TTCGGCTTGGAGCTGGGGTTCAGTATGACATACTTGAAGGAGTTCTaGATGTGCTCCACCCAGGCAGCCAGCCACATGACTGTGTTATCT | + |
|
Preference number: 5 (lower is better) Translates to: FGLELGFSMTYLKEF*MCSTQAASHMTVLS Trigger: AGATAACACAGTCATGTGGCTGGCTGCCTGGGTGGAGCACATCCAGAACTCCTTCAAGTATGTCATACTGAACCCCAGCTCCAAGCCGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS TCA 90 bp | GCATCAAAGAGGTCATCCCTAGGGTCCTTGTCTTCCATGAAGTGCTaGAGGTTCTGGAACACGAGCTTCTCCACCGTCACGTGGTTCTTA | + |
|
Preference number: 5 (lower is better) Translates to: ASKRSSLGSLSSMKC*RFWNTSFSTVTWFL Trigger: TAAGAACCACGTGACGGTGGAGAAGCTCGTGTTCCAGAACCTTCAGCACTTCATGGAAGACAAGGACCCTAGGGATGACCTCTTTGATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CAA 90 bp | ATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAGTGAAGTACGGGCCCTaGTGCTCCAGCTGCCTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: ILEKPQYCFTVRKNISAAVKYGP*CSSCLH Trigger: GTGGAGGCAGCTGGAGCACAAGGGCCCGTACTTCAC...TGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CAA 90 bp | CTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGTCTTCACCTGCCTGGTaGAAGGCCCAGGCAAACCTC | + |
|
Preference number: 5 (lower is better) Translates to: LEKPQYCFTVRKNISAAKSSPAW*KAQANL Trigger: GAGGTTTGCCTGGGCCTTCAACCAGGCAGGTGAAGA...CTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CAA 90 bp | TATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCCACTTCACACTGCTCTaGCTCGTTTCTTCCCACCCG | + |
|
Preference number: 5 (lower is better) Translates to: YSRKTTILLHSEKEHFSGHFTLL*LVSSHP Trigger: CGGGTGGGAAGAAACGAGCAAGAGCAGTGTGAAGTG...GCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CAA 90 bp | ATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCATTCAACATCCCCATCTaGGGATGGTCACCTCGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: ILEKPQYCFTVRKNISAAFNIPI*GWSPRP Trigger: TGGCCGAGGTGACCATCCCAAGATGGGGATGTTGAA...TGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CAA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGCCCTCTTCCTTCTCATaGCCTGTCCGCAGTGCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: FILEKPQYCFTVRKNISAPSSFS*PVRSAS Trigger: GCTGGCACTGCGGACAGGCAATGAGAAGGAAGAGGG...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CAA 90 bp | TTTATTCTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGTGCTTATTCTCCTCCTaGTCTGTGGCCTTCGCGCAC | + |
|
Preference number: 5 (lower is better) Translates to: FILEKPQYCFTVRKNISACLFSS*SVAFAH Trigger: GTGCGCGAAGGCCACAGACAAGGAGGAGAATAAGCA...CGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAGAATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS-3UTR CAA 90 bp | CTAGAAAAACCACAATACTGCTTCACAGTGAGAAAGAACATTTCAGCGGCAAAGTTCAGTATGACATACTaGAAGGAGTTCTGGATGTGC | + |
|
Preference number: 5 (lower is better) Translates to: LEKPQYCFTVRKNISAAKFSMTY*KEFWMC Trigger: GCACATCCAGAACTCCTTCAAGTATGTCATACTGAA...CTTTGCCGCTGAAATGTTCTTTCTCACTGTGAAGCAGTATTGTGGTTTTTCTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 72 bp | AGCTCTACAACGTGCTCCTGGCCACCTGCGGGCGCGTaGAGTCGGATGTGCTCCACACGGAGCGAGCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: SSTTCSWPPAGA*SRMCSTRSEQQ Trigger: CTGCTGCTCGCTCCGTGTGGAGCACATCCGACTGCACGCGCCCGCAGGTGGCCAGGAGCACGTTGTAGAGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 72 bp | GAGGAAGTGCACTCCGTCAGGAAGGGGCTCGTAGGCTaGGGTGAAGTACGGGCCCTTGTGCTCCAGCTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: EEVHSVRKGLVG*GEVRALVLQLP Trigger: AGGCAGCTGGAGCACAAGGGCCCGTACTTCACCCCAGCCTACGAGCCCCTTCCTGACGGAGTGCACTTCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CAA 72 bp | TTGGCGGTGCCCAGGGCCACCTGCTTATTCTCCTCCTaGTCTGTGGCCTTCGCGCACAATCGGGCCAGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: LAVPRATCLFSS*SVAFAHNRASC Trigger: ACAGCTGGCCCGATTGTGCGCGAAGGCCACAGACAAGGAGGAGAATAAGCAGGTGGCCCTGGGCACCGCCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS TCA 72 bp | CTCCACCCAGGCAGCCAGCCACATGACTGTGTTATCTaGGCGTACCTCTTTCCACTGGTGACCGGCTGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: LHPGSQPHDCVI*AYLFPLVTGWG Trigger: CCCCCAGCCGGTCACCAGTGGAAAGAGGTACGCTCAGATAACACAGTCATGTGGCTGGCTGCCTGGGTGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 72 bp | CGACCTCCTCCGCTGCCAAGCTCAGCTTCAGCGGTTTaGCATCGTAGAGGAAGTGCACTCCGTCAGGAAGGG | + |
|
Preference number: 6 (lower is better) Translates to: RPPPLPSSASAV*HRRGSALRQEG Trigger: CCCTTCCTGACGGAGTGCACTTCCTCTACGATGGCAAACCGCTGAAGCTGAGCTTGGCAGCGGAGGAGGTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 72 bp | ACAACCCCCTTCAAGCGTCGCGCTACCTCATACTTCTaGCAATCCATCTCCCCCTTCGGCTTGGAGCTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: TTPFKRRATSYF*QSISPFGLELG Trigger: CCCCAGCTCCAAGCCGAAGGGGGAGATGGATTGGCAGAAGTATGAGGTAGCGCGACGCTTGAAGGGGGTTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 72 bp | ATGGAATCCTTTCCCAAGAAGTCCAGCTCTACAACGTaGTCCTGGCCACCTGCGGGCGCGTGCAGTCGGATG | + |
|
Preference number: 6 (lower is better) Translates to: MESFPKKSSSTT*SWPPAGACSRM Trigger: CATCCGACTGCACGCGCCCGCAGGTGGCCAGGAGCACGTTGTAGAGCTGGACTTCTTGGGAAAGGATTCCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 72 bp | TGCCCAGGGCCACCTGCTTATTCTCCTCCTTGTCTGTaGCCTTCGCGCACAATCGGGCCAGCTGTTCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: CPGPPAYSPPCL*PSRTIGPAVLP Trigger: TGGAAGAACAGCTGGCCCGATTGTGCGCGAAGGCCACAGACAAGGAGGAGAATAAGCAGGTGGCCCTGGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 72 bp | CTGTCCCCTCTCATTCTCAGGTCAGTCTCTGCTTTCTaGAGCTCTACCTGTGCCTCAGCCACCTGTGCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: LSPLILRSVSAF*SSTCASATCAF Trigger: GAAGGCACAGGTGGCTGAGGCACAGGTAGAGCTGCAGAAAGCAGAGACTGACCTGAGAATGAGAGGGGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CAA 72 bp | CCCTTCGGCTTGGAGCTGGGGTTCAGTATGACATACTaGAAGGAGTTCTGGATGTGCTCCACCCAGGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: PFGLELGFSMTY*KEFWMCSTQAA Trigger: GGCTGCCTGGGTGGAGCACATCCAGAACTCCTTCAAGTATGTCATACTGAACCCCAGCTCCAAGCCGAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS TCA 72 bp | ATGACTGTGTTATCTGAGCGTACCTCTTTCCACTGGTaGCCGGCTGGGGGCTCAGGGATCTTGGAATCCCTG | + |
|
Preference number: 6 (lower is better) Translates to: MTVLSERTSFHW*PAGGSGILESL Trigger: CAGGGATTCCAAGATCCCTGAGCCCCCAGCCGGTCACCAGTGGAAAGAGGTACGCTCAGATAACACAGTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS TCA 72 bp | AGGTCATCCCTAGGGTCCTTGTCTTCCATGAAGTGCTaGAGGTTCTGGAACACGAGCTTCTCCACCGTCACG | + |
|
Preference number: 6 (lower is better) Translates to: RSSLGSLSSMKC*RFWNTSFSTVT Trigger: CGTGACGGTGGAGAAGCTCGTGTTCCAGAACCTTCAGCACTTCATGGAAGACAAGGACCCTAGGGATGACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 72 bp | GTCCTGCAAGTGCTTGTTCAGGCTGGAAGTGGTCAGTaGATCAAAGAGGTCATCCCTAGGGTCCTTGTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: VLQVLVQAGSGQ*IKEVIPRVLVF Trigger: GAAGACAAGGACCCTAGGGATGACCTCTTTGATGCACTGACCACTTCCAGCCTGAACAAGCACTTGCAGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 72 bp | GTCCTGCGGGCCTCAGCTCTTTCCAGGAAGTGCTTATaGATCTCCGTGAAGTCACATTTGTCAAGGTGTGTG | + |
|
Preference number: 6 (lower is better) Translates to: VLRASALSRKCL*ISVKSHLSRCV Trigger: CACACACCTTGACAAATGTGACTTCACGGAGATCCATAAGCACTTCCTGGAAAGAGCTGAGGCCCGCAGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CAA 72 bp | TTGGCTGTCAGCCCTTCCATCAAGTCCTGCAAGTGCTaGTTCAGGCTGGAAGTGGTCAGTGCATCAAAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: LAVSPSIKSCKC*FRLEVVSASKR Trigger: CCTCTTTGATGCACTGACCACTTCCAGCCTGAACAAGCACTTGCAGGACTTGATGGAAGGGCTGACAGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 72 bp | CGAGCTTCTCCACCGTCACGTGGTTCTTATAGCGGATaGAATCCTTTCCCAAGAAGTCCAGCTCTACAACGT | + |
|
Preference number: 6 (lower is better) Translates to: RASPPSRGSYSG*NPFPRSPALQR Trigger: ACGTTGTAGAGCTGGACTTCTTGGGAAAGGATTCCATCCGCTATAAGAACCACGTGACGGTGGAGAAGCTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CAA 72 bp | ACCTCATACTTCTGCCAATCCATCTCCCCCTTCGGCTaGGAGCTGGGGTTCAGTATGACATACTTGAAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: TSYFCQSISPFG*ELGFSMTYLKE Trigger: CTCCTTCAAGTATGTCATACTGAACCCCAGCTCCAAGCCGAAGGGGGAGATGGATTGGCAGAAGTATGAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS GCA 72 bp | ACAATCGTCGCTGCTTCTGAAGGAAACTTTTGGGTTTaGTGTCCCCTCTCATTCTCAGGTCAGTCTCTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: TIVAASEGNFWV*CPLSFSGQSLL Trigger: AAGCAGAGACTGACCTGAGAATGAGAGGGGACAGCAAACCCAAAAGTTTCCTTCAGAAGCAGCGACGATTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||
| CDS CCA 72 bp | GCTTTAACAATCGTCGCTGCTTCTGAAGGAAACTTTTaGGTTTGCTGTCCCCTCTCATTCTCAGGTCAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: ALTIVAASEGNF*VCCPLSFSGQS Trigger: AGACTGACCTGAGAATGAGAGGGGACAGCAAACCCAAAAGTTTCCTTCAGAAGCAGCGACGATTGTTAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000958.9 |
||