Pregenerated sensors for TOP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070544Ensembl transcript IDs: ENSMUST00000109468.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATGGTGGAGCGAAGACAGGCCCTTTATGCTCTAGGAATTTCCATTTaGTGCCTTCTGGATAACGTTCTTCTTCCCACCATTTCCACTTCT | + |
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Preference number: 5 (lower is better) Translates to: MVERRQALYALGISI*CLLDNVLLPTISTS Trigger: AGAAGTGGAAATGGTGGGAAGAAGAACGTTATCCAGAAGGCATCAAATGGAAATTCCTAGAGCATAAAGGGCCTGTCTTCGCTCCACCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 90 bp | TCCTTGCTCATCTGTTTCCGAGCTTCTGACTGCGCTTTGAAATACTaGCTCATCTGTGTAAAGTCGCATTTGCTTAGGTTGGTAATCGTA | + |
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Preference number: 5 (lower is better) Translates to: SLLICFRASDCALKY*LICVKSHLLRLVIV Trigger: TACGATTACCAACCTAAGCAAATGCGACTTTACACAGATGAGCCAGTATTTCAAAGCGCAGTCAGAAGCTCGGAAACAGATGAGCAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS GCA 90 bp | TTGCTATGCTTAGACTTTTCCCGGTCCTTATCCTTATCCTTCTTGTaGTCCTTATGCCGGTGTTCTCGATCTTTGTGTTTATCTTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: LLCLDFSRSLSLSFL*SLCRCSRSLCLSLC Trigger: ACACAAAGATAAACACAAAGATCGAGAACACCGGCATAAGGAGCACAAGAAGGATAAGGATAAGGACCGGGAAAAGTCTAAGCATAGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 90 bp | ATCATCTTCATCTCGAAGCCTCTTCAATGGCTTAATATCCTCTTTTaGAGGAGCAAAATAGCCATCATCCTCAGGTTCATCTTTAATTCG | + |
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Preference number: 5 (lower is better) Translates to: IIFISKPLQWLNILF*RSKIAIILRFIFNS Trigger: CGAATTAAAGATGAACCTGAGGATGATGGCTATTTTGCTCCTCCAAAAGAGGATATTAAGCCATTGAAGAGGCTTCGAGATGAAGATGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 90 bp | CTTAGGTTTATAATCAGCATCATCTTCATCTCGAAGCCTCTTCAATaGCTTAATATCCTCTTTTGGAGGAGCAAAATAGCCATCATCCTC | + |
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Preference number: 5 (lower is better) Translates to: LRFIISIIFISKPLQ*LNILFWRSKIAIIL Trigger: GAGGATGATGGCTATTTTGCTCCTCCAAAAGAGGATATTAAGCCATTGAAGAGGCTTCGAGATGAAGATGATGCTGATTATAAACCTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 90 bp | TTGATTCGTGAACTGGGATTCAGCATGATATATTTGATAGAACCTTaGATATTCTCTGTCCAGGAGACCAGCCAAGTAACCTTGTTATCA | + |
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Preference number: 5 (lower is better) Translates to: LIRELGFSMIYLIEP*IFSVQETSQVTLLS Trigger: TGATAACAAGGTTACTTGGCTGGTCTCCTGGACAGAGAATATCCAAGGTTCTATCAAATATATCATGCTGAATCCCAGTTCACGAATCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS TCA 90 bp | TTTGATTTTCAATTTTTCTTCCTTGCTCATCTGTTTCCGAGCTTCTaGCTGCGCTTTGAAATACTGGCTCATCTGTGTAAAGTCGCATTT | + |
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Preference number: 5 (lower is better) Translates to: FDFQFFFLAHLFPSF*LRFEILAHLCKVAF Trigger: AAATGCGACTTTACACAGATGAGCCAGTATTTCAAAGCGCAGTCAGAAGCTCGGAAACAGATGAGCAAGGAAGAAAAATTGAAAATCAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS GCA 90 bp | TTTCCTGAATATTTCCTTAGTAGTATATTCGTGGTCAAGCATTTTTaGAAAGAATGTAGCTACTTCTTCTGCTTTAGGACTCAGCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: FPEYFLSSIFVVKHF*KECSYFFCFRTQLH Trigger: ATGAAGCTGAGTCCTAAAGCAGAAGAAGTAGCTACATTCTTTGCAAAAATGCTTGACCACGAATATACTACTAAGGAAATATTCAGGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS TCA 72 bp | TCCCTCGGCCTCGGAAAAGCCCCGGAGGCTCTATCTTaGAGTTGGCAATCCGCTCTCTATGATTATCCATTA | + |
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Preference number: 6 (lower is better) Translates to: SLGLGKAPEALS*SWQSALYDYPL Trigger: TAATGGATAATCATAGAGAGCGGATTGCCAACTTCAAGATAGAGCCTCCGGGGCTTTTCCGAGGCCGAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CAA 90 bp | ATAGAACCTTGGATATTCTCTGTCCAGGAGACCAGCCAAGTAACCTaGTTATCATGTCGGACTTCCTTCCATTTATGTCCAGGAGGGGGA | + |
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Preference number: 6 (lower is better) Translates to: IEPWIFSVQETSQVT*LSCRTSFHLCPGGG Trigger: TCCCCCTCCTGGACATAAATGGAAGGAAGTCCGACATGATAACAAGGTTACTTGGCTGGTCTCCTGGACAGAGAATATCCAAGGTTCTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 72 bp | CATAACTTTACCATCATAGTAAAACTTGACACTCTCTaGCAGAGGCTCATATGGTGGAGCGAAGACAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: HNFTIIVKLDTL*QRLIWWSEDRP Trigger: GGGCCTGTCTTCGCTCCACCATATGAGCCTCTGCCAGAGAGTGTCAAGTTTTACTATGATGGTAAAGTTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 72 bp | ACAGTGCTACAGCTCTCTGACGAACTTTCATCTCTTTaGACTTCCAGTCTTCCCGATACTGATTTCGGATCT | + |
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Preference number: 6 (lower is better) Translates to: TVLQLSDELSSL*TSSLPDTDFGS Trigger: AGATCCGAAATCAGTATCGGGAAGACTGGAAGTCCAAAGAGATGAAAGTTCGTCAGAGAGCTGTAGCACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CAA 72 bp | TGCTTAGACTTTTCCCGGTCCTTATCCTTATCCTTCTaGTGCTCCTTATGCCGGTGTTCTCGATCTTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: CLDFSRSLSLSF*CSLCRCSRSLC Trigger: ACACAAAGATCGAGAACACCGGCATAAGGAGCACAAGAAGGATAAGGATAAGGACCGGGAAAAGTCTAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS TCA 72 bp | GCAAGCTTATCAATGAAGTACAGTGCTACAGCTCTCTaGCGAACTTTCATCTCTTTGGACTTCCAGTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: ASLSMKYSATAL*RTFISLDFQSS Trigger: GGAAGACTGGAAGTCCAAAGAGATGAAAGTTCGTCAGAGAGCTGTAGCACTGTACTTCATTGATAAGCTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS TCA 72 bp | TCCTTCCCAGGAAAGTCAAATTCCACCACATACTCCTaGCCATCCAATTCTGGGTGTAAATTGATGTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: SFPGKSNSTTYS*PSNSGCKLMCS Trigger: GGAACACATCAATTTACACCCAGAATTGGATGGTCAGGAGTATGTGGTGGAATTTGACTTTCCTGGGAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 72 bp | ATCTGTTTCCGAGCTTCTGACTGCGCTTTGAAATACTaGCTCATCTGTGTAAAGTCGCATTTGCTTAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: ICFRASDCALKY*LICVKSHLLRL Trigger: CAACCTAAGCAAATGCGACTTTACACAGATGAGCCAGTATTTCAAAGCGCAGTCAGAAGCTCGGAAACAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CAA 72 bp | TGGATATTCTCTGTCCAGGAGACCAGCCAAGTAACCTaGTTATCATGTCGGACTTCCTTCCATTTATGTCCA | + |
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Preference number: 6 (lower is better) Translates to: WIFSVQETSQVT*LSCRTSFHLCP Trigger: TGGACATAAATGGAAGGAAGTCCGACATGATAACAAGGTTACTTGGCTGGTCTCCTGGACAGAGAATATCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CAA 90 bp | CTGTTGCTATGCTTAGACTTTTCCCGGTCCTTATCCTTATCCTTCTaGTGCTCCTTATGCCGGTGTTCTCGATCTTTGTGTTTATCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LLLCLDFSRSLSLSF*CSLCRCSRSLCLSL Trigger: CAAAGATAAACACAAAGATCGAGAACACCGGCATAAGGAGCACAAGAAGGATAAGGATAAGGACCGGGAAAAGTCTAAGCATAGCAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS GCA 72 bp | TTAGACTTTTCCCGGTCCTTATCCTTATCCTTCTTGTaGTCCTTATGCCGGTGTTCTCGATCTTTGTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: LDFSRSLSLSFL*SLCRCSRSLCL Trigger: TAAACACAAAGATCGAGAACACCGGCATAAGGAGCACAAGAAGGATAAGGATAAGGACCGGGAAAAGTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 72 bp | ATCTCGAAGCCTCTTCAATGGCTTAATATCCTCTTTTaGAGGAGCAAAATAGCCATCATCCTCAGGTTCATC | + |
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Preference number: 6 (lower is better) Translates to: ISKPLQWLNILF*RSKIAIILRFI Trigger: GATGAACCTGAGGATGATGGCTATTTTGCTCCTCCAAAAGAGGATATTAAGCCATTGAAGAGGCTTCGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 72 bp | GAACTGGGATTCAGCATGATATATTTGATAGAACCTTaGATATTCTCTGTCCAGGAGACCAGCCAAGTAACC | + |
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Preference number: 6 (lower is better) Translates to: ELGFSMIYLIEP*IFSVQETSQVT Trigger: GGTTACTTGGCTGGTCTCCTGGACAGAGAATATCCAAGGTTCTATCAAATATATCATGCTGAATCCCAGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CAA 90 bp | AATTTTTCTTCCTTGCTCATCTGTTTCCGAGCTTCTGACTGCGCTTaGAAATACTGGCTCATCTGTGTAAAGTCGCATTTGCTTAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: NFSSLLICFRASDCA*KYWLICVKSHLLRL Trigger: CAACCTAAGCAAATGCGACTTTACACAGATGAGCCAGTATTTCAAAGCGCAGTCAGAAGCTCGGAAACAGATGAGCAAGGAAGAAAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS TCA 72 bp | CAATTTTTCTTCCTTGCTCATCTGTTTCCGAGCTTCTaGCTGCGCTTTGAAATACTGGCTCATCTGTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: QFFFLAHLFPSF*LRFEILAHLCK Trigger: TTTACACAGATGAGCCAGTATTTCAAAGCGCAGTCAGAAGCTCGGAAACAGATGAGCAAGGAAGAAAAATTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS CCA 72 bp | ATAATCAGCATCATCTTCATCTCGAAGCCTCTTCAATaGCTTAATATCCTCTTTTGGAGGAGCAAAATAGCC | + |
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Preference number: 6 (lower is better) Translates to: IISIIFISKPLQ*LNILFWRSKIA Trigger: GGCTATTTTGCTCCTCCAAAAGAGGATATTAAGCCATTGAAGAGGCTTCGAGATGAAGATGATGCTGATTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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| CDS GCA 72 bp | GTCAAGCATTTTTGCAAAGAATGTAGCTACTTCTTCTaGTTTAGGACTCAGCTTCATAACTTTACCATCATA | + |
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Preference number: 6 (lower is better) Translates to: VKHFCKECSYFF*FRTQLHNFTII Trigger: TATGATGGTAAAGTTATGAAGCTGAGTCCTAAAGCAGAAGAAGTAGCTACATTCTTTGCAAAAATGCTTGAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109468.3 |
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