RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TONSL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059323

Ensembl transcript IDs: ENSMUST00000165163.8, ENSMUST00000165190.2, ENSMUST00000166974.2, ENSMUST00000168185.8

Found 257 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGTCCGGGGCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTaGTGGGCCTGCCGCTGCGGGTCAGAGGTGTATCTACCTCCAGCC +
Preference number: 1 (lower is better)
Translates to: GSGALQDIAHSLTPR*WACRCGSEVYLPPA
Trigger: GGCTGGAGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGACCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 90 bp CTGCTTGACACGGGTCCGGGGCCTTGCAGGACATCGCTCATAGTCTaGCACCGAGGTGCTGGGCCTGCCGCTGCGGGTCAGAGGTGTATC +
Preference number: 1 (lower is better)
Translates to: LLDTGPGPCRTSLIV*HRGAGPAAAGQRCI
Trigger: GATACACCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGACCCGTGTCAAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 90 bp ACTTGGAATGGTCTGGAGGGCAGGGGAGCTGCGGGAAGCTTGGCCTaGGGAGGCCATCTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTG +
Preference number: 1 (lower is better)
Translates to: TWNGLEGRGAAGSLA*GGHLEPLLHGCRLL
Trigger: CAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCTCCAGACCATTCCAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp GGCCTTCAATGCAAGCTCGGTGCAGCAGGGTCTCTCCCATGTCATTaGGCCGGTTCCACTTGTTCACCTTCCGCCGGCCCACACAGCCCT +
Preference number: 1 (lower is better)
Translates to: GLQCKLGAAGSLPCH*AGSTCSPSAGPHSP
Trigger: AGGGCTGTGTGGGCCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCCTGCTGCACCGAGCTTGCATTGAAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp CAGGACATCGCTCATAGTCTGACACCGAGGTGCTGGGCCTGCCGCTaGGGGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGT +
Preference number: 1 (lower is better)
Translates to: QDIAHSLTPRCWACR*GSEVYLPPAIPQPG
Trigger: ACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp GCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTGCTGGGCCTaGCGCTGCGGGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAG +
Preference number: 1 (lower is better)
Translates to: ALQDIAHSLTPRCWA*RCGSEVYLPPAIPQ
Trigger: CTGGGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp TGGAGGGCAGGGGAGCTGCGGGAAGCTTGGCCTGAGGAGGCCATCTaGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGG +
Preference number: 1 (lower is better)
Translates to: WRAGELREAWPEEAI*SLFSMVAAFCLVSR
Trigger: CCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp TCCGGGGCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTGCTaGGCCTGCCGCTGCGGGTCAGAGGTGTATCTACCTCCAGCCATT +
Preference number: 1 (lower is better)
Translates to: SGALQDIAHSLTPRC*ACRCGSEVYLPPAI
Trigger: AATGGCTGGAGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp GGCCCTGCTTCACAAGATCCTGGACACGACGCAGTTGGCCTTCAATaGAAGCTCGGTGCAGCAGGGTCTCTCCCATGTCATTGCGCCGGT +
Preference number: 1 (lower is better)
Translates to: GPASQDPGHDAVGLQ*KLGAAGSLPCHCAG
Trigger: ACCGGCGCAATGACATGGGAGAGACCCTGCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTGAAGCAGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp AAGGTCCCTGAAGTACAACTTCACCCACTGCTGCAGTGTCTCCAGTaGGCTGAGGCCCTTCCTGGTACGGAGAGTCACGGATGCCCCTCG +
Preference number: 1 (lower is better)
Translates to: KVPEVQLHPLLQCLQ*AEALPGTESHGCPS
Trigger: CGAGGGGCATCCGTGACTCTCCGTACCAGGAAGGGCCTCAGCCCACTGGAGACACTGCAGCAGTGGGTGAAGTTGTACTTCAGGGACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp GGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATGGTCTaGAGGGCAGGGGAGCTGCGGGAAGCTTGGCCTGAGGAGGCCATC +
Preference number: 1 (lower is better)
Translates to: GGEVSGSNRWLLGMV*RAGELREAWPEEAI
Trigger: GATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCTCCAGACCATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp GGGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTGGTTGGTCTGTaGCTGGTCTTTCGAGGTCGGGACACGGCAGACACAGTTTCCTCC +
Preference number: 1 (lower is better)
Translates to: GLSSSSELLLLLVGL*LVFRGRDTADTVSS
Trigger: GGAGGAAACTGTGTCTGCCGTGTCCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp TTCAGGGGATGGCCCTGCTTCACAAGATCCTGGACACGACGCAGTTaGCCTTCAATGCAAGCTCGGTGCAGCAGGGTCTCTCCCATGTCA +
Preference number: 1 (lower is better)
Translates to: FRGWPCFTRSWTRRS*PSMQARCSRVSPMS
Trigger: TGACATGGGAGAGACCCTGCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTGAAGCAGGGCCATCCCCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp TTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATaGTCTGGAGGGCAGGGGAGCTGCGGGAAGCTTGGCCTGAGGAGG +
Preference number: 1 (lower is better)
Translates to: LREERSQGQIDGYLE*SGGQGSCGKLGLRR
Trigger: CCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCTCCAGACCATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp TGCAGGGACTTGGGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTaGTTGGTCTGTGCCTGGTCTTTCGAGGTCGGGACACGGCAGACA +
Preference number: 1 (lower is better)
Translates to: CRDLGYPHPLSCYCC*LVCAWSFEVGTRQT
Trigger: TGTCTGCCGTGTCCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 90 bp CTGGGGTTCTCTGCAGGCTCTGCATTCAAGCTGCCATCTCCTGCTTaGGTCCGTGCACACCAACCATCAAGACTTGTCAGGCGACTCTGC +
Preference number: 1 (lower is better)
Translates to: LGFSAGSAFKLPSPA*VRAHQPSRLVRRLC
Trigger: GCAGAGTCGCCTGACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAGCTTGAATGCAGAGCCTGCAGAGAACCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp ACAAGATCCTGGACACGACGCAGTTGGCCTTCAATGCAAGCTCGGTaGAGCAGGGTCTCTCCCATGTCATTGCGCCGGTTCCACTTGTTC +
Preference number: 1 (lower is better)
Translates to: TRSWTRRSWPSMQAR*SRVSPMSLRRFHLF
Trigger: GAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCCTGCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp GGGGGTGATGCCATCACACCCCTGGCCACCTGGGTCATCCACTGCTaGTCCATGGTCCAGAAGGAAGCGAACAATCTCAAGATGTCCATA +
Preference number: 1 (lower is better)
Translates to: GGDAITPLATWVIHC*SMVQKEANNLKMSI
Trigger: TATGGACATCTTGAGATTGTTCGCTTCCTTCTGGACCATGGAGCAGCAGTGGATGACCCAGGTGGCCAGGGGTGTGATGGCATCACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp CTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCACCCACTGCTaGAGTGTCTCCAGTGGGCTGAGGCCCTTCCTGGTACGGAGAGTC +
Preference number: 1 (lower is better)
Translates to: LVSRSRSLKYNFTHC*SVSSGLRPFLVRRV
Trigger: GACTCTCCGTACCAGGAAGGGCCTCAGCCCACTGGAGACACTGCAGCAGTGGGTGAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp CACGCTGGGGTTCTCTGCAGGCTCTGCATTCAAGCTGCCATCTCCTaGTTGAGTCCGTGCACACCAACCATCAAGACTTGTCAGGCGACT +
Preference number: 1 (lower is better)
Translates to: HAGVLCRLCIQAAIS*LSPCTPTIKTCQAT
Trigger: AGTCGCCTGACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAGCTTGAATGCAGAGCCTGCAGAGAACCCCAGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp TGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCACCCACTaGTGCAGTGTCTCCAGTGGGCTGAGGCCCTTCCTGGTACGGAGA +
Preference number: 1 (lower is better)
Translates to: CLVSRSRSLKYNFTH*CSVSSGLRPFLVRR
Trigger: TCTCCGTACCAGGAAGGGCCTCAGCCCACTGGAGACACTGCAGCAGTGGGTGAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp TATCCTCATCCTCTGAGCTGCTACTGCTGCTGGTTGGTCTGTGCCTaGTCTTTCGAGGTCGGGACACGGCAGACACAGTTTCCTCCAGAA +
Preference number: 1 (lower is better)
Translates to: YPHPLSCYCCWLVCA*SFEVGTRQTQFPPE
Trigger: TTCTGGAGGAAACTGTGTCTGCCGTGTCCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp TCTCGGTCTTTGGTGCTCAGGTCTTTGGTGCACAGTTGCAACTCCTaGAACTGCACGAAGATCTTGTCCCAGAGGTCAGAGTTCAGCGGC +
Preference number: 1 (lower is better)
Translates to: SRSLVLRSLVHSCNS*NCTKILSQRSEFSG
Trigger: GCCGCTGAACTCTGACCTCTGGGACAAGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR GCA 90 bp CACACCGAGTCTCGGTCTTTGGTGCTCAGGTCTTTGGTGCACAGTTaGAACTCCTGCAACTGCACGAAGATCTTGTCCCAGAGGTCAGAG +
Preference number: 1 (lower is better)
Translates to: HTESRSLVLRSLVHS*NSCNCTKILSQRSE
Trigger: CTCTGACCTCTGGGACAAGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGACTCGGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR TCA 90 bp GCCTCCTCACGTGACAGGGCAATGTTGAACCAAGTCTTAGCTTCCTaGAACAGAGGGAGAAAAACACAAGGTCGGTGGCTGCCTACCACA +
Preference number: 1 (lower is better)
Translates to: ASSRDRAMLNQVLAS*NRGRKTQGRWLPTT
Trigger: TGTGGTAGGCAGCCACCGACCTTGTGTTTTTCTCCCTCTGTTTCAGGAAGCTAAGACTTGGTTCAACATTGCCCTGTCACGTGAGGAGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 90 bp CTCCATGGTCCAGAAGGAAGCGAACAATCTCAAGATGTCCATAGTTaGATGCTTCATGGAGAGGTGTCCAGCCGCAGTAGTCTCGGGGAT +
Preference number: 1 (lower is better)
Translates to: LHGPEGSEQSQDVHS*MLHGEVSSRSSLGD
Trigger: ATCCCCGAGACTACTGCGGCTGGACACCTCTCCATGAAGCATGCAACTATGGACATCTTGAGATTGTTCGCTTCCTTCTGGACCATGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 90 bp TTTAAAGAAGAGCTTGGAACTTTGGTCCATTGTGCACGCACCCTCTaGCAGTCTCTGACACACCGAGTCTCGGTCTTTGGTGCTCAGGTC +
Preference number: 1 (lower is better)
Translates to: FKEELGTLVHCARTL*QSLTHRVSVFGAQV
Trigger: GACCTGAGCACCAAAGACCGAGACTCGGTGTGTCAGAGACTGCCAGAGGGTGCGTGCACAATGGACCAAAGTTCCAAGCTCTTCTTTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR GCA 90 bp ATGGTCCAGAAGGAAGCGAACAATCTCAAGATGTCCATAGTTGCATaGTTCATGGAGAGGTGTCCAGCCGCAGTAGTCTCGGGGATTCAG +
Preference number: 1 (lower is better)
Translates to: MVQKEANNLKMSIVA*FMERCPAAVVSGIQ
Trigger: CTGAATCCCCGAGACTACTGCGGCTGGACACCTCTCCATGAAGCATGCAACTATGGACATCTTGAGATTGTTCGCTTCCTTCTGGACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 90 bp CACTTGACGTGGCTGTCTCTCTACTTTTGGGTGGGTCAGGAATCTTaGCTTCACCCTGCTGTGTGGTATGTCTCAGTCTTTTCTGCGATG +
Preference number: 1 (lower is better)
Translates to: HLTWLSLYFWVGQES*LHPAVWYVSVFSAM
Trigger: CATCGCAGAAAAGACTGAGACATACCACACAGCAGGGTGAAGTCAAGATTCCTGACCCACCCAAAAGTAGAGAGACAGCCACGTCAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 90 bp TGGCCTTCAATGCAAGCTCGGTGCAGCAGGGTCTCTCCCATGTCATaGCGCCGGTTCCACTTGTTCACCTTCCGCCGGCCCACACAGCCC +
Preference number: 2 (lower is better)
Translates to: WPSMQARCSRVSPMS*RRFHLFTFRRPTQP
Trigger: GGGCTGTGTGGGCCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCCTGCTGCACCGAGCTTGCATTGAAGGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR TCA 90 bp GGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGTATTCCTCCTCGGGGCGGGAAGCTTGGCCTaGGGAGGCCATCTGGAGCCT +
Preference number: 2 (lower is better)
Translates to: GQRCIYLQPFPSQVFLLGAGSLA*GGHLEP
Trigger: AGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGC...CCCGAGGAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR GCA 90 bp TCCGGGGCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTGCTGGGCCTGCCCTCTGAGCTGCTACTaGTGCTGGTTGGTCTGTGCC +
Preference number: 2 (lower is better)
Translates to: SGALQDIAHSLTPRCWACPLSCY*CWLVCA
Trigger: GGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGG...GCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp CAGTGTCTCCAGTGGGCTGAGGCCCTTCCTGGTACGGAGAGTCACGGATGCCCCAGAGTTCCAGTTCACTaGTCTCTGGGGCCTCACTGG +
Preference number: 2 (lower is better)
Translates to: QCLQWAEALPGTESHGCPRVPVH*SLGPHW
Trigger: CCAGTGAGGCCCCAGAGACCAGTGAACTGGAACTCT...GGGGCATCCGTGACTCTCCGTACCAGGAAGGGCCTCAGCCCACTGGAGACACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR GCA 90 bp GGTGCTGGGCCTGCCGCTGCGGGTCAGAGGTGTATCTACCTCCAGCCATTCCCCTCTCTCCCATGTCATTaGGCCGGTTCCACTTGTTCA +
Preference number: 2 (lower is better)
Translates to: GAGPAAAGQRCIYLQPFPSLPCH*AGSTCS
Trigger: TGAACAAGTGGAACCGGCGCAATGACATGGGAGAGA...GGGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp AGCAGGGTCTCTCCCATGTCATTGCGCCGGTTCCACTTGTTCACCTTCCGCCGGTGCAGCTGGAATCTCTaGGCCTGCTGGGCACAGCAA +
Preference number: 2 (lower is better)
Translates to: SRVSPMSLRRFHLFTFRRCSWNL*ACWAQQ
Trigger: TTGCTGTGCCCAGCAGGCCCAGAGATTCCAGCTGCA...CCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp CAGTGTCTCCAGTGGGCTGAGGCCCTTCCTGGTACGGAGAGTCACGGATGCCCCTCTCTGGGGCCTCACTaGCTTCTTCCTCTTCTTCCT +
Preference number: 2 (lower is better)
Translates to: QCLQWAEALPGTESHGCPSLGPH*LLPLLP
Trigger: AGGAAGAAGAGGAAGAAGCCAGTGAGGCCCCAGAGA...GGGGCATCCGTGACTCTCCGTACCAGGAAGGGCCTCAGCCCACTGGAGACACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 90 bp AGGGGCTTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTaGGAATGGTCTGGAGGGCAGGGGAGCTGCGGGAAGCTTGGCCTG +
Preference number: 2 (lower is better)
Translates to: RGLREERSQGQIDGY*EWSGGQGSCGKLGL
Trigger: CAGGCCAAGCTTCCCGCAGCTCCCCTGCCCTCCAGACCATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp GCTGCGGGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGTATTCCTCATCTGCCTCTGCAGCTaGAATCTCTGGGCCTGCTGG +
Preference number: 2 (lower is better)
Translates to: AAGQRCIYLQPFPSQVFLICLCS*NLWACW
Trigger: CCAGCAGGCCCAGAGATTCCAGCTGCAGAGGCAGAT...GAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp CTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCACACCCCTGGCCACCTaGGTCATCCACTGCTGCTCC +
Preference number: 2 (lower is better)
Translates to: LEPLLHGCRLLSCLKVKVTPLAT*VIHCCS
Trigger: GGAGCAGCAGTGGATGACCCAGGTGGCCAGGGGTGT...GACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 90 bp ATTCAGGGGATGGCCCTGCTTCACAAGATCCTGGACACGACGCAGTaGGCCTTCAATGCAAGCTCGGTGCAGCAGGGTCTCTCCCATGTC +
Preference number: 2 (lower is better)
Translates to: IQGMALLHKILDTTQ*AFNASSVQQGLSHV
Trigger: GACATGGGAGAGACCCTGCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTGAAGCAGGGCCATCCCCTGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 90 bp AGGGACTTGGGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTGGTaGGTCTGTGCCTGGTCTTTCGAGGTCGGGACACGGCAGACACAG +
Preference number: 2 (lower is better)
Translates to: RDLGYPHPLSCYCCW*VCAWSFEVGTRQTQ
Trigger: CTGTGTCTGCCGTGTCCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR TCA 90 bp TTCACAAGATCCTGGACACGACGCAGTTGGCCTTCAATGCAAGCTCGGTGCAGCCGGCCCACACAGCCCTaGAGCTCCTCATCTTCTTCC +
Preference number: 2 (lower is better)
Translates to: FTRSWTRRSWPSMQARCSRPTQP*SSSSSS
Trigger: GGAAGAAGATGAGGAGCTTCAGGGCTGTGTGGGCCG...GCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp ATGGCCTGCAGGGACTTGGGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTGGTTACTTGGAATGGTCTaGAGGGCAGGGGAGCTGCGG +
Preference number: 2 (lower is better)
Translates to: MACRDLGYPHPLSCYCCWLLGMV*RAGELR
Trigger: CCGCAGCTCCCCTGCCCTCCAGACCATTCCAAGTAA...CCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCAGGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 90 bp GCTGGGGTTCTCTGCAGGCTCTGCATTCAAGCTGCCATCTCCTGCTaGAGTCCGTGCACACCAACCATCAAGACTTGTCAGGCGACTCTG +
Preference number: 2 (lower is better)
Translates to: AGVLCRLCIQAAISC*SPCTPTIKTCQATL
Trigger: CAGAGTCGCCTGACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAGCTTGAATGCAGAGCCTGCAGAGAACCCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp GGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGTATTCCTCCTCGGGAATCTCTGGGCCTGCTaGGCACAGCAAAAAGCCTTC +
Preference number: 2 (lower is better)
Translates to: GQRCIYLQPFPSQVFLLGNLWAC*AQQKAF
Trigger: GAAGGCTTTTTGCTGTGCCCAGCAGGCCCAGAGATT...CCCGAGGAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR GCA 90 bp GCTGCGGGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGTATTCCTCAGGTGCTGTAAGATCTaGCTCTGCAGCTGGAATCTC +
Preference number: 2 (lower is better)
Translates to: AAGQRCIYLQPFPSQVFLRCCKI*LCSWNL
Trigger: GAGATTCCAGCTGCAGAGGCAGATCTTACAGCACCT...GAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR GCA 90 bp CCATCTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGCAGTTGGCCTTCAATaGAAGCTCGGTGCAGCAGGG +
Preference number: 2 (lower is better)
Translates to: PSGASSPWLPPSVLSQGQAVGLQ*KLGAAG
Trigger: CCCTGCTGCACCGAGCTTGCATTGAAGGCCAACTGC...TTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp CAGGGGCTTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATGCTGCAGTGTCTCCAGTaGGCTGAGGCCCTTCCTGGT +
Preference number: 2 (lower is better)
Translates to: QGLEGGEVSGSNRWLLGMLQCLQ*AEALPG
Trigger: ACCAGGAAGGGCCTCAGCCCACTGGAGACACTGCAG...CATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp TCCGGGGCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTGCTGGGCCTGCTCAGGGTCAAATAGATaGTTACTTGGAATGGTCTGG +
Preference number: 2 (lower is better)
Translates to: SGALQDIAHSLTPRCWACSGSNR*LLGMVW
Trigger: CCAGACCATTCCAAGTAACCATCTATTTGACCCTGA...GCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 90 bp GCTGTGTGGTATGTCTCAGTCTTTTCTGCGATGGCCTGCAGGGACTaGGGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTGGTTGGTC +
Preference number: 2 (lower is better)
Translates to: AVWYVSVFSAMACRD*GYPHPLSCYCCWLV
Trigger: GACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCAGGCCATCGCAGAAAAGACTGAGACATACCACACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR TCA 90 bp GGGTCTCTCCCATGTCATTGCGCCGGTTCCACTTGTTCACCTTCCGCCGGCCCACAAGTCTTAGCTTCCTaGAACAGAGGGAGAAAAACA +
Preference number: 2 (lower is better)
Translates to: GSLPCHCAGSTCSPSAGPQVLAS*NRGRKT
Trigger: TGTTTTTCTCCCTCTGTTTCAGGAAGCTAAGACTTG...TGGGCCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR GCA 90 bp CCATCTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAACCTGGGTCATCCACTaGTGCTCCATGGTCCAGAAG +
Preference number: 2 (lower is better)
Translates to: PSGASSPWLPPSVLSQGQTWVIH*CSMVQK
Trigger: CTTCTGGACCATGGAGCAGCAGTGGATGACCCAGGT...TTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp TCATCCTCTGAGCTGCTACTGCTGCTGGTTGGTCTGTGCCTGGTCTTTCGAGGTTCCACTGCTGCTCCATaGTCCAGAAGGAAGCGAACA +
Preference number: 2 (lower is better)
Translates to: SSSELLLLLVGLCLVFRGSTAAP*SRRKRT
Trigger: TGTTCGCTTCCTTCTGGACCATGGAGCAGCAGTGGA...ACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 90 bp ACACACCGAGTCTCGGTCTTTGGTGCTCAGGTCTTTGGTGCACAGTaGCAACTCCTGCAACTGCACGAAGATCTTGTCCCAGAGGTCAGA +
Preference number: 2 (lower is better)
Translates to: THRVSVFGAQVFGAQ*QLLQLHEDLVPEVR
Trigger: TCTGACCTCTGGGACAAGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGACTCGGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR-3UTR GCA 90 bp GATGCCCCTCGCTCAATGAGTAATTCAGCTACCTCAAAGTGGCCACAGTTGAGGTCAATGCAAGCTCGGTaGAGCAGGGTCTCTCCCATG +
Preference number: 2 (lower is better)
Translates to: DAPRSMSNSATSKWPQLRSMQAR*SRVSPM
Trigger: CATGGGAGAGACCCTGCTGCACCGAGCTTGCATTGA...CCTCAACTGTGGCCACTTTGAGGTAGCTGAATTACTCATTGAGCGAGGGGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCATGCCATCACACCCCTaGCCACCTGGGTCATCCACT +
Preference number: 2 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFMPSHP*PPGSST
Trigger: AGTGGATGACCCAGGTGGCCAGGGGTGTGATGGCAT...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp GGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGTATTCCTCCTCGGGCTCTCTACTTTTGGGTaGGTCAGGAATCTTGACTTC +
Preference number: 2 (lower is better)
Translates to: GQRCIYLQPFPSQVFLLGLSTFG*VRNLDF
Trigger: GAAGTCAAGATTCCTGACCCACCCAAAAGTAGAGAG...CCCGAGGAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 90 bp ACGGCAGGACTAGGATCAGAGGCATTTAAAGAAGAGCTTGGAACTTaGGTCCATTGTGCACGCACCCTCTGGCAGTCTCTGACACACCGA +
Preference number: 2 (lower is better)
Translates to: TAGLGSEAFKEELGT*VHCARTLWQSLTHR
Trigger: TCGGTGTGTCAGAGACTGCCAGAGGGTGCGTGCACAATGGACCAAAGTTCCAAGCTCTTCTTTAAATGCCTCTGATCCTAGTCCTGCCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR-3UTR TCA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCTCCAGCCTCCTCACGTaGCAGGGCAATGTTGAACCA +
Preference number: 2 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFSSLLT*QGNVEP
Trigger: TGGTTCAACATTGCCCTGTCACGTGAGGAGGCTGGA...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR TCA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCTCTTCTTCCAGCTGCTaGGACAGGCCGTCAGCATCA +
Preference number: 2 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFSSSSC*DRPSAS
Trigger: TGATGCTGACGGCCTGTCTCAGCAGCTGGAAGAAGA...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCCAGTTCACTGGTCTCTaGGGCCTCACTGGCTTCTTC +
Preference number: 2 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFQFTGL*GLTGFF
Trigger: GAAGAAGCCAGTGAGGCCCCAGAGACCAGTGAACTG...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp ATTCAAGCTGCCATCTCCTGCTTGAGTCCGTGCACACCAACCATCAAGACTTGTGATGGTTACTTGGAATaGTCTGGAGGGCAGGGGAGC +
Preference number: 2 (lower is better)
Translates to: IQAAISCLSPCTPTIKTCDGYLE*SGGQGS
Trigger: GCTCCCCTGCCCTCCAGACCATTCCAAGTAACCATC...ACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAGCTTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR TCA 90 bp CAGGGGCTTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATGCAAGGTCAAGGTCCCTaGAGTACAACTTCACCCACT +
Preference number: 2 (lower is better)
Translates to: QGLEGGEVSGSNRWLLGMQGQGP*STTSPT
Trigger: AGTGGGTGAAGTTGTACTTCAGGGACCTTGACCTTG...CATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR GCA 90 bp CTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCTTCTTCTGTGTCTTTTaGCATACTCAGTTCCTGCAG +
Preference number: 2 (lower is better)
Translates to: LEPLLHGCRLLSCLKVKVFFCVF*HTQFLQ
Trigger: CTGCAGGAACTGAGTATGGCAAAAGACACAGAAGAA...GACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR GCA 90 bp ATTCAAGCTGCCATCTCCTGCTTGAGTCCGTGCACACCAACCATCAAGACTTGTTTTTCTGCGATGGCCTaGAGGGACTTGGGTTATCCT +
Preference number: 2 (lower is better)
Translates to: IQAAISCLSPCTPTIKTCFSAMA*RDLGYP
Trigger: AGGATAACCCAAGTCCCTGCAGGCCATCGCAGAAAA...ACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAGCTTGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CCA 90 bp TTTAAAGAAGAGCTTGGAACTTTGGTCCATTGTGCACGCACCCTCTGGCAGTCTTGGTGCTCAGGTCTTTaGTGCACAGTTGCAACTCCT +
Preference number: 2 (lower is better)
Translates to: FKEELGTLVHCARTLWQSWCSGL*CTVATP
Trigger: AGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCA...AGACTGCCAGAGGGTGCGTGCACAATGGACCAAAGTTCCAAGCTCTTCTTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR TCA 72 bp GGTCTGGAGGGCAGGGGAGCTGCGGGAAGCTTGGCCTaGGGAGGCCATCTGGAGCCTCTTCTCCATGGTTGC +
Preference number: 3 (lower is better)
Translates to: GLEGRGAAGSLA*GGHLEPLLHGC
Trigger: GCAACCATGGAGAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCTCCAGACC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 72 bp GGGAATGAGTGCTGTCTTGGGGGCAGGGACTTCCTCTaGGCCCCGAGGCAGGCTAGGCACCAAGCGACGGCT +
Preference number: 3 (lower is better)
Translates to: GNECCLGGRDFL*APRQARHQATA
Trigger: AGCCGTCGCTTGGTGCCTAGCCTGCCTCGGGGCTCAGAGGAAGTCCCTGCCCCCAAGACAGCACTCATTCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp GGAATGGTCTGGAGGGCAGGGGAGCTGCGGGAAGCTTaGCCTGAGGAGGCCATCTGGAGCCTCTTCTCCATG +
Preference number: 3 (lower is better)
Translates to: GMVWRAGELREA*PEEAIWSLFSM
Trigger: CATGGAGAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCTCCAGACCATTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CAA 90 bp GGTGCTGGGCCTGCCGCTGCGGGTCAGAGGTGTATCTACCTCCAGCCATTCCCCGGTGGGTCAGGAATCTaGACTTCACCCTGCTGTGTG +
Preference number: 3 (lower is better)
Translates to: GAGPAAAGQRCIYLQPFPGGSGI*TSPCCV
Trigger: CACACAGCAGGGTGAAGTCAAGATTCCTGACCCACC...GGGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp GCTCATAGTCTGACACCGAGGTGCTGGGCCTGCCGCTaGGGGTCAGAGGTGTATCTACCTCCAGCCATTCCC +
Preference number: 3 (lower is better)
Translates to: AHSLTPRCWACR*GSEVYLPPAIP
Trigger: GGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CAA 90 bp TCCGGGGCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTGCTGGGCCTGCTGCTACTGCTGCTGGTaGGTCTGTGCCTGGTCTTTC +
Preference number: 3 (lower is better)
Translates to: SGALQDIAHSLTPRCWACCYCCW*VCAWSF
Trigger: GAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCA...GCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 72 bp CCAGCCATTCCCCAGCCAGGTATTCCTCCTCGGGAATaGGTGCTGTCTTGGGGGCAGGGACTTCCTCTGAGC +
Preference number: 3 (lower is better)
Translates to: PAIPQPGIPPRE*VLSWGQGLPLS
Trigger: GCTCAGAGGAAGTCCCTGCCCCCAAGACAGCACTCATTCCCGAGGAGGAATACCTGGCTGGGGAATGGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp GCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTaGTGGGCCTGCCGCTGCGGGTCAGAGGTGTATCTA +
Preference number: 3 (lower is better)
Translates to: ALQDIAHSLTPR*WACRCGSEVYL
Trigger: TAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp TTGCAGGACATCGCTCATAGTCTGACACCGAGGTGCTaGGCCTGCCGCTGCGGGTCAGAGGTGTATCTACCT +
Preference number: 3 (lower is better)
Translates to: LQDIAHSLTPRC*ACRCGSEVYLP
Trigger: AGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 72 bp CTGCTGAGACAGGCCGTCAGCATCATCCTCGCTCTCTaGGAGTTCCAGTTCACTGGTCTCTGGGGCCTCACT +
Preference number: 3 (lower is better)
Translates to: LLRQAVSIILAL*EFQFTGLWGLT
Trigger: AGTGAGGCCCCAGAGACCAGTGAACTGGAACTCTCAGAGAGCGAGGATGATGCTGACGGCCTGTCTCAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 72 bp CGATGGCCTGCAGGGACTTGGGTTATCCTCATCCTCTaGGCTGCTACTGCTGCTGGTTGGTCTGTGCCTGGT +
Preference number: 3 (lower is better)
Translates to: RWPAGTWVILIL*AATAAGWSVPG
Trigger: ACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCAGGCCATCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 72 bp CACACCAACCATCAAGACTTGTCAGGCGACTCTGCTTaGCACGGGTCCGGGGCCTTGCAGGACATCGCTCAT +
Preference number: 3 (lower is better)
Translates to: HTNHQDLSGDSA*HGSGALQDIAH
Trigger: ATGAGCGATGTCCTGCAAGGCCCCGGACCCGTGTCAAGCAGAGTCGCCTGACAAGTCTTGATGGTTGGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp GCCATCACACCCCTGGCCACCTGGGTCATCCACTGCTaGTCCATGGTCCAGAAGGAAGCGAACAATCTCAAG +
Preference number: 3 (lower is better)
Translates to: AITPLATWVIHC*SMVQKEANNLK
Trigger: CTTGAGATTGTTCGCTTCCTTCTGGACCATGGAGCAGCAGTGGATGACCCAGGTGGCCAGGGGTGTGATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp GATGCCATCACACCCCTGGCCACCTGGGTCATCCACTaGTGCTCCATGGTCCAGAAGGAAGCGAACAATCTC +
Preference number: 3 (lower is better)
Translates to: DAITPLATWVIH*CSMVQKEANNL
Trigger: GAGATTGTTCGCTTCCTTCTGGACCATGGAGCAGCAGTGGATGACCCAGGTGGCCAGGGGTGTGATGGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp TCATCCTCTGAGCTGCTACTGCTGCTGGTTGGTCTGTaGCTGGTCTTTCGAGGTCGGGACACGGCAGACACA +
Preference number: 3 (lower is better)
Translates to: SSSELLLLLVGL*LVFRGRDTADT
Trigger: TGTGTCTGCCGTGTCCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp TGGCCCTGCTTCACAAGATCCTGGACACGACGCAGTTaGCCTTCAATGCAAGCTCGGTGCAGCAGGGTCTCT +
Preference number: 3 (lower is better)
Translates to: WPCFTRSWTRRS*PSMQARCSRVS
Trigger: AGAGACCCTGCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTGAAGCAGGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp GAAGTACAACTTCACCCACTGCTGCAGTGTCTCCAGTaGGCTGAGGCCCTTCCTGGTACGGAGAGTCACGGA +
Preference number: 3 (lower is better)
Translates to: EVQLHPLLQCLQ*AEALPGTESHG
Trigger: TCCGTGACTCTCCGTACCAGGAAGGGCCTCAGCCCACTGGAGACACTGCAGCAGTGGGTGAAGTTGTACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp CCTCTGAGCTGCTACTGCTGCTGGTTGGTCTGTGCCTaGTCTTTCGAGGTCGGGACACGGCAGACACAGTTT +
Preference number: 3 (lower is better)
Translates to: PLSCYCCWLVCA*SFEVGTRQTQF
Trigger: AAACTGTGTCTGCCGTGTCCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 72 bp CTTTGGTCCATTGTGCACGCACCCTCTGGCAGTCTCTaGCACACCGAGTCTCGGTCTTTGGTGCTCAGGTCT +
Preference number: 3 (lower is better)
Translates to: LWSIVHAPSGSL*HTESRSLVLRS
Trigger: AGACCTGAGCACCAAAGACCGAGACTCGGTGTGTCAGAGACTGCCAGAGGGTGCGTGCACAATGGACCAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR GCA 72 bp GACTTGGGTTATCCTCATCCTCTGAGCTGCTACTGCTaGTGGTTGGTCTGTGCCTGGTCTTTCGAGGTCGGG +
Preference number: 3 (lower is better)
Translates to: DLGYPHPLSCYC*WLVCAWSFEVG
Trigger: CCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp GCCTGCAGGGACTTGGGTTATCCTCATCCTCTGAGCTaGTACTGCTGCTGGTTGGTCTGTGCCTGGTCTTTC +
Preference number: 3 (lower is better)
Translates to: ACRDLGYPHPLS*YCCWLVCAWSF
Trigger: GAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp CACCCCTGGCCACCTGGGTCATCCACTGCTGCTCCATaGTCCAGAAGGAAGCGAACAATCTCAAGATGTCCA +
Preference number: 3 (lower is better)
Translates to: HPWPPGSSTAAP*SRRKRTISRCP
Trigger: TGGACATCTTGAGATTGTTCGCTTCCTTCTGGACCATGGAGCAGCAGTGGATGACCCAGGTGGCCAGGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp CTTGGCCTGAGGAGGCCATCTGGAGCCTCTTCTCCATaGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGT +
Preference number: 3 (lower is better)
Translates to: LGLRRPSGASSP*LPPSVLSQGQG
Trigger: ACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGGCCTCCTCAGGCCAAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp GTCTCAGGGTCAAATAGATGGTTACTTGGAATGGTCTaGAGGGCAGGGGAGCTGCGGGAAGCTTGGCCTGAG +
Preference number: 3 (lower is better)
Translates to: VSGSNRWLLGMV*RAGELREAWPE
Trigger: CTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCTCCAGACCATTCCAAGTAACCATCTATTTGACCCTGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp GAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATaGTCTGGAGGGCAGGGGAGCTGCGGGAAGCTTGGC +
Preference number: 3 (lower is better)
Translates to: ERSQGQIDGYLE*SGGQGSCGKLG
Trigger: GCCAAGCTTCCCGCAGCTCCCCTGCCCTCCAGACCATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp GGGCTTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATaGTTACTTGGAATGGTCTGGAGGGCAGGGGAGCTG +
Preference number: 3 (lower is better)
Translates to: GLEGGEVSGSNR*LLGMVWRAGEL
Trigger: CAGCTCCCCTGCCCTCCAGACCATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR-3UTR CAA 90 bp GGGTCTCTCCCATGTCATTGCGCCGGTTCCACTTGTTCACCTTCCGCCGGCCCACTTCTTCTGTGTCTTTaGCCATACTCAGTTCCTGCA +
Preference number: 3 (lower is better)
Translates to: GSLPCHCAGSTCSPSAGPLLLCL*PYSVPA
Trigger: TGCAGGAACTGAGTATGGCAAAAGACACAGAAGAAG...TGGGCCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp TCACAAGATCCTGGACACGACGCAGTTGGCCTTCAATaGAAGCTCGGTGCAGCAGGGTCTCTCCCATGTCAT +
Preference number: 3 (lower is better)
Translates to: SQDPGHDAVGLQ*KLGAAGSLPCH
Trigger: ATGACATGGGAGAGACCCTGCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp AGGGACTTGGGTTATCCTCATCCTCTGAGCTGCTACTaGTGCTGGTTGGTCTGTGCCTGGTCTTTCGAGGTC +
Preference number: 3 (lower is better)
Translates to: RDLGYPHPLSCY*CWLVCAWSFEV
Trigger: GACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp CTGGCAGTCTCTGACACACCGAGTCTCGGTCTTTGGTaGTCAGGTCTTTGGTGCACAGTTGCAACTCCTGCA +
Preference number: 3 (lower is better)
Translates to: LAVSDTPSLGLW*SGLWCTVATPA
Trigger: TGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGACTCGGTGTGTCAGAGACTGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR CCA 72 bp CCTCTGGCAGTCTCTGACACACCGAGTCTCGGTCTTTaGTGCTCAGGTCTTTGGTGCACAGTTGCAACTCCT +
Preference number: 3 (lower is better)
Translates to: PLAVSDTPSLGL*CSGLWCTVATP
Trigger: AGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGACTCGGTGTGTCAGAGACTGCCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR TCA 72 bp TCTGCAGGCTCTGCATTCAAGCTGCCATCTCCTGCTTaGGTCCGTGCACACCAACCATCAAGACTTGTCAGG +
Preference number: 3 (lower is better)
Translates to: SAGSAFKLPSPA*VRAHQPSRLVR
Trigger: CCTGACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAGCTTGAATGCAGAGCCTGCAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp TGTAAGATCTGCCTCTGCAGCTGGAATCTCTGGGCCTaGTGGGCACAGCAAAAAGCCTTCTGGAAGCATGGA +
Preference number: 3 (lower is better)
Translates to: CKICLCSWNLWA*WAQQKAFWKHG
Trigger: TCCATGCTTCCAGAAGGCTTTTTGCTGTGCCCAGCAGGCCCAGAGATTCCAGCTGCAGAGGCAGATCTTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp CAGCATCATCCTCGCTCTCTGAGAGTTCCAGTTCACTaGTCTCTGGGGCCTCACTGGCTTCTTCCTCTTCTT +
Preference number: 3 (lower is better)
Translates to: QHHPRSLRVPVH*SLGPHWLLPLL
Trigger: AAGAAGAGGAAGAAGCCAGTGAGGCCCCAGAGACCAGTGAACTGGAACTCTCAGAGAGCGAGGATGATGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CCA 72 bp GACACACCGAGTCTCGGTCTTTGGTGCTCAGGTCTTTaGTGCACAGTTGCAACTCCTGCAACTGCACGAAGA +
Preference number: 3 (lower is better)
Translates to: DTPSLGLWCSGL*CTVATPATARR
Trigger: TCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGACTCGGTGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR TCA 72 bp TTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTaGAGTACAACTTCACCCACTGCTGCAGTGTCTCCA +
Preference number: 3 (lower is better)
Translates to: LPPSVLSQGQGP*STTSPTAAVSP
Trigger: TGGAGACACTGCAGCAGTGGGTGAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp TCTCGGTCTTTGGTGCTCAGGTCTTTGGTGCACAGTTaGAACTCCTGCAACTGCACGAAGATCTTGTCCCAG +
Preference number: 3 (lower is better)
Translates to: SRSLVLRSLVHS*NSCNCTKILSQ
Trigger: CTGGGACAAGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR GCA 72 bp ACACCGAGTCTCGGTCTTTGGTGCTCAGGTCTTTGGTaGACAGTTGCAACTCCTGCAACTGCACGAAGATCT +
Preference number: 3 (lower is better)
Translates to: TPSLGLWCSGLW*TVATPATARRS
Trigger: AGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGACTCGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR-3UTR CAA 90 bp TTTAAAGAAGAGCTTGGAACTTTGGTCCATTGTGCACGCACCCTCTGGCAGTCTGTCTTTGGTGCACAGTaGCAACTCCTGCAACTGCAC +
Preference number: 3 (lower is better)
Translates to: FKEELGTLVHCARTLWQSVFGAQ*QLLQLH
Trigger: GTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGAC...AGACTGCCAGAGGGTGCGTGCACAATGGACCAAAGTTCCAAGCTCTTCTTTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
3UTR TCA 72 bp CGTGACAGGGCAATGTTGAACCAAGTCTTAGCTTCCTaGAACAGAGGGAGAAAAACACAAGGTCGGTGGCTG +
Preference number: 3 (lower is better)
Translates to: RDRAMLNQVLAS*NRGRKTQGRWL
Trigger: CAGCCACCGACCTTGTGTTTTTCTCCCTCTGTTTCAGGAAGCTAAGACTTGGTTCAACATTGCCCTGTCACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp CCAGAAGGAAGCGAACAATCTCAAGATGTCCATAGTTaGATGCTTCATGGAGAGGTGTCCAGCCGCAGTAGT +
Preference number: 3 (lower is better)
Translates to: PEGSEQSQDVHS*MLHGEVSSRSS
Trigger: ACTACTGCGGCTGGACACCTCTCCATGAAGCATGCAACTATGGACATCTTGAGATTGTTCGCTTCCTTCTGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp CTACTTTTGGGTGGGTCAGGAATCTTGACTTCACCCTaGTGTGTGGTATGTCTCAGTCTTTTCTGCGATGGC +
Preference number: 3 (lower is better)
Translates to: LLLGGSGILTSP*CVVCLSLFCDG
Trigger: GCCATCGCAGAAAAGACTGAGACATACCACACAGCAGGGTGAAGTCAAGATTCCTGACCCACCCAAAAGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR TCA 72 bp TGGCTGTCTCTCTACTTTTGGGTGGGTCAGGAATCTTaGCTTCACCCTGCTGTGTGGTATGTCTCAGTCTTT +
Preference number: 3 (lower is better)
Translates to: WLSLYFWVGQES*LHPAVWYVSVF
Trigger: AAAGACTGAGACATACCACACAGCAGGGTGAAGTCAAGATTCCTGACCCACCCAAAAGTAGAGAGACAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR GCA 72 bp TCCTCTTCTTCTGTGTCTTTTGCCATACTCAGTTCCTaGAGTCTGATTTCAGTGTCACGGGCTTCTTGTGGC +
Preference number: 3 (lower is better)
Translates to: SSSSVSFAILSS*SLISVSRASCG
Trigger: GCCACAAGAAGCCCGTGACACTGAAATCAGACTGCAGGAACTGAGTATGGCAAAAGACACAGAAGAAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp AGGGCAGGGGAGCTGCGGGAAGCTTGGCCTGAGGAGGCCATCTGGAGCCTCTTCCTCCGCGCCAGTGGATaGCACCCAGGTTGTATCGGG +
Preference number: 4 (lower is better)
Translates to: RAGELREAWPEEAIWSLFLRASG*HPGCIG
Trigger: CCCGATACAACCTGGGTGCCATCCACTGGCGCGGAG...GAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp AGGGCAGGGGAGCTGCGGGAAGCTTGGCCTGAGGAGGCCATCTGGAGCCTCTTCGCCTCTTCCAGCTGCTaGTGCAGCTGGATCACTGCC +
Preference number: 4 (lower is better)
Translates to: RAGELREAWPEEAIWSLFASSSC*CSWITA
Trigger: GGCAGTGATCCAGCTGCAGCAGCAGCTGGAAGAGGC...GAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp GGTGCTGGGCCTGCCGCTGCGGGTCAGAGGTGTATCTACCTCCAGCCATTCCCCTGCCCTCCGCGCCAGTaGATGGCACCCAGGTTGTAT +
Preference number: 4 (lower is better)
Translates to: GAGPAAAGQRCIYLQPFPCPPRQ*MAPRLY
Trigger: ATACAACCTGGGTGCCATCCACTGGCGCGGAGGGCA...GGGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGCGGCAGGCCCAGCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp AGGGCAGGGGAGCTGCGGGAAGCTTGGCCTGAGGAGGCCATCTGGAGCCTCTTCTCAGCCTCTTCCAGCTaGTGCTGCAGCTGGATCACT +
Preference number: 4 (lower is better)
Translates to: RAGELREAWPEEAIWSLFSASSS*CCSWIT
Trigger: AGTGATCCAGCTGCAGCAGCAGCTGGAAGAGGCTGA...GAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp ATGCAAGCTCGGTGCAGCAGGGTCTCTCCCATGTCATaGCGCCGGTTCCACTTGTTCACCTTCCGCCGGCCC +
Preference number: 4 (lower is better)
Translates to: MQARCSRVSPMS*RRFHLFTFRRP
Trigger: GGGCCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCCTGCTGCACCGAGCTTGCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp CAGTGTCTCCAGTGGGCTGAGGCCCTTCCTGGTACGGAGAGTCACGGATGCCCCATATATCCAGATGGGTaGGGCCAATGGTGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: QCLQWAEALPGTESHGCPIYPDG*GQWWPR
Trigger: CCTGGGCCACCATTGGCCGCACCCATCTGGATATAT...GGGGCATCCGTGACTCTCCGTACCAGGAAGGGCCTCAGCCCACTGGAGACACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp GGGTCTCTCCCATGTCATTGCGCCGGTTCCACTTGTTCACCTTCCGCCGGCCCACTGGTAAGCCTCAGCTaGCTTGGGAAAGTCACCCGC +
Preference number: 4 (lower is better)
Translates to: GSLPCHCAGSTCSPSAGPLVSLS*LGKVTR
Trigger: GCGGGTGACTTTCCCAAGGCAGCTGAGGCTTACCAG...TGGGCCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp CTCGGATGGCCGCTTGGTAAGCCGCCCGGCAAGCACTaGACGTGGCTGTCTCTCTACTTTTGGGTGGGTCAG +
Preference number: 4 (lower is better)
Translates to: LGWPLGKPPGKH*TWLSLYFWVGQ
Trigger: CTGACCCACCCAAAAGTAGAGAGACAGCCACGTCAAGTGCTTGCCGGGCGGCTTACCAAGCGGCCATCCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp GGCCTGAGGAGGCCATCTGGAGCCTCTTCTCCATGGTaGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCC +
Preference number: 4 (lower is better)
Translates to: GLRRPSGASSPW*PPSVLSQGQGP
Trigger: GGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGGCCTCCTCAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp TCCGGGGCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTGCTGGGCCTGCCTCAAAGGCAGCTTGTaGCTGCAACAAGGAATCTCT +
Preference number: 4 (lower is better)
Translates to: SGALQDIAHSLTPRCWACLKGSL*LQQGIS
Trigger: AGAGATTCCTTGTTGCAGGCACAAGCTGCCTTTGAG...GCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp AGCAGGGTCTCTCCCATGTCATTGCGCCGGTTCCACTTGTTCACCTTCCGCCGGTGTAGTTCCTGCTGGTaGTCCTCCAAAGCGTCCTTG +
Preference number: 4 (lower is better)
Translates to: SRVSPMSLRRFHLFTFRRCSSCW*SSKASL
Trigger: CAAGGACGCTTTGGAGGAGCACCAGCAGGAACTACA...CCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp ATGGCCCTGCTTCACAAGATCCTGGACACGACGCAGTaGGCCTTCAATGCAAGCTCGGTGCAGCAGGGTCTC +
Preference number: 4 (lower is better)
Translates to: MALLHKILDTTQ*AFNASSVQQGL
Trigger: GAGACCCTGCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTGAAGCAGGGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp GGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTGGTaGGTCTGTGCCTGGTCTTTCGAGGTCGGGACACGG +
Preference number: 4 (lower is better)
Translates to: GYPHPLSCYCCW*VCAWSFEVGTR
Trigger: CCGTGTCCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR TCA 90 bp GTCTCTGACACACCGAGTCTCGGTCTTTGGTGCTCAGGTCTTTGGTGCACAGTTCTAGACTGGCACAGCTaGCCTCGGGGTTGGCAGACA +
Preference number: 4 (lower is better)
Translates to: VSDTPSLGLWCSGLWCTVLDWHS*PRGWQT
Trigger: TGTCTGCCAACCCCGAGGTCAGCTGTGCCAGTCTAG...AACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGACTCGGTGTGTCAGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR GCA 90 bp GGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGTATTCCTCCTCGGGAGCAGATGTAGTTCCTaGTGGTGCTCCTCCAAAGCG +
Preference number: 4 (lower is better)
Translates to: GQRCIYLQPFPSQVFLLGSRCSS*WCSSKA
Trigger: CGCTTTGGAGGAGCACCAGCAGGAACTACATCTGCT...CCCGAGGAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp ATGGCCTGCAGGGACTTGGGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTGGCACAGGGCTGTCTGTTaGAGGCTCTCACAGGTGAGA +
Preference number: 4 (lower is better)
Translates to: MACRDLGYPHPLSCYCCWHRAVC*RLSQVR
Trigger: TCTCACCTGTGAGAGCCTGCAACAGACAGCCCTGTG...CCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCAGGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp TCCGGGGCCTTGCAGGACATCGCTCATAGTCTGACACCGAGGTGCTGGGCCTGCCTGCAGCTGGATCACTaGCAATACATACTTGAGACT +
Preference number: 4 (lower is better)
Translates to: SGALQDIAHSLTPRCWACLQLDH*QYILET
Trigger: AGTCTCAAGTATGTATTGGCAGTGATCCAGCTGCAG...GCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp GAGAAAAACACAAGGTCGGTGGCTGCCTACCACATCCAGCTGCCCACAGCCAATAGCTGTCCATTCCTCTaGGCCCTGGTCTTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: EKNTRSVAAYHIQLPTANSCPFL*ALVLAL
Trigger: CAAGGCCAAGACCAGGGCCCAGAGGAATGGACAGCT...ATTGGCTGTGGGCAGCTGGATGTGGTAGGCAGCCACCGACCTTGTGTTTTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp AGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTaGGAATGGTCTGGAGGGCAGGGGAGCTGCGGGAAG +
Preference number: 4 (lower is better)
Translates to: REERSQGQIDGY*EWSGGQGSCGK
Trigger: CTTCCCGCAGCTCCCCTGCCCTCCAGACCATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR TCA 90 bp GGTGCTCAGGTCTTTGGTGCACAGTTGCAACTCCTGCAACTGCACGAAGATCTTGTCCAGAGAGGTGAGTaGGGGGCAGCAAGGGAGACA +
Preference number: 4 (lower is better)
Translates to: GAQVFGAQLQLLQLHEDLVQRGE*GAARET
Trigger: TGTCTCCCTTGCTGCCCCTCACTCACCTCTCTGGAC...AAGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR TCA 90 bp GAGAAAAACACAAGGTCGGTGGCTGCCTACCACATCCAGCTGCCCACAGCCAATTGCACAGCCTTGCGGTaGTCCTTCATGTCTCCCAGT +
Preference number: 4 (lower is better)
Translates to: EKNTRSVAAYHIQLPTANCTALR*SFMSPS
Trigger: ACTGGGAGACATGAAGGATCACCGCAAGGCTGTGCA...ATTGGCTGTGGGCAGCTGGATGTGGTAGGCAGCCACCGACCTTGTGTTTTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCGATGGGTGCGGCCAATaGTGGCCCAGGCTCGCTGTA +
Preference number: 4 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFDGCGQ*WPRLAV
Trigger: TACAGCGAGCCTGGGCCACCATTGGCCGCACCCATC...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp CTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCTCACTCAGTTCCCGCTaGGTCAGCATCCCCTCTAGT +
Preference number: 4 (lower is better)
Translates to: LEPLLHGCRLLSCLKVKVSLSSR*VSIPSS
Trigger: ACTAGAGGGGATGCTGACCCAGCGGGAACTGAGTGA...GACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp GCCCGGCAAGCACTTGACGTGGCTGTCTCTCTACTTTaGGGTGGGTCAGGAATCTTGACTTCACCCTGCTGT +
Preference number: 4 (lower is better)
Translates to: ARQALDVAVSLL*GGSGILTSPCC
Trigger: ACAGCAGGGTGAAGTCAAGATTCCTGACCCACCCAAAAGTAGAGAGACAGCCACGTCAAGTGCTTGCCGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR TCA 90 bp GTCTTTGGTGCACAGTTGCAACTCCTGCAACTGCACGAAGATCTTGTCCCAGAGATAGGCCAAGGAAGCTaGGGCCTTGGGACCGCTCTT +
Preference number: 4 (lower is better)
Translates to: VFGAQLQLLQLHEDLVPEIGQGS*GLGTAL
Trigger: AAGAGCGGTCCCAAGGCCTCAGCTTCCTTGGCCTAT...CTCTGGGACAAGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR TCA 90 bp GGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGTATTCCTCCTCGGGACATACTTGAGACTCTaGCAGACAGTCACTCTCTGG +
Preference number: 4 (lower is better)
Translates to: GQRCIYLQPFPSQVFLLGTYLRL*QTVTLW
Trigger: CCAGAGAGTGACTGTCTGTCAGAGTCTCAAGTATGT...CCCGAGGAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR TCA 90 bp GAGAAAAACACAAGGTCGGTGGCTGCCTACCACATCCAGCTGCCCACAGCCAATATAGCCATGGCACCTTaGAGATCATTGCCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: EKNTRSVAAYHIQLPTANIAMAP*RSLPSA
Trigger: GGCTGAGGGCAATGATCTTCAAGGTGCCATGGCTAT...ATTGGCTGTGGGCAGCTGGATGTGGTAGGCAGCCACCGACCTTGTGTTTTTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR TCA 90 bp CCATCTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAATGTCCTATCTCCAGTTaGCAGACGGTCCTCGGAAGG +
Preference number: 4 (lower is better)
Translates to: PSGASSPWLPPSVLSQGQCPISS*QTVLGR
Trigger: CCTTCCGAGGACCGTCTGTCAACTGGAGATAGGACA...TTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp AACAGAGGGAGAAAAACACAAGGTCGGTGGCTGCCTACCACATCCAGCTGCCCATCTTCCAGCTGCTGCTaGAGCTGGATCACTGCCAAT +
Preference number: 4 (lower is better)
Translates to: NRGRKTQGRWLPTTSSCPSSSCC*SWITAN
Trigger: ATTGGCAGTGATCCAGCTGCAGCAGCAGCTGGAAGA...TGGGCAGCTGGATGTGGTAGGCAGCCACCGACCTTGTGTTTTTCTCCCTCTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp CACAAGATCCTGGACACGACGCAGTTGGCCTTCAATGCAAGCTCGGTGCAGCAGCACCTTGAAGATCATTaGCCTCAGCCTCTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: HKILDTTQLAFNASSVQQHLEDH*PQPLPA
Trigger: AGCTGGAAGAGGCTGAGGGCAATGATCTTCAAGGTG...CTGCTGCACCGAGCTTGCATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp GATGCCCCTCGCTCAATGAGTAATTCAGCTACCTCAAAGTGGCCACAGTTGAGGCCAGAGCGTTGCCCTTaGGCAGCCTCAGTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: DAPRSMSNSATSKWPQLRPERCP*AASVLP
Trigger: AGGAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGG...CCTCAACTGTGGCCACTTTGAGGTAGCTGAATTACTCATTGAGCGAGGGGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCTCTGGGCCCTGGTCTTaGCCTTGCTCAGCTGGCGAA +
Preference number: 4 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFSGPWS*PCSAGE
Trigger: TTCGCCAGCTGAGCAAGGCCAAGACCAGGGCCCAGA...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp CAGGGGCTTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATGCTTCTAAGCAGCGCATaGCCTGAGAGTGCTGCCCTC +
Preference number: 4 (lower is better)
Translates to: QGLEGGEVSGSNRWLLGMLLSSA*PESAAL
Trigger: GAGGGCAGCACTCTCAGGCCATGCGCTGCTTAGAAG...CATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp ATGGCCTGCAGGGACTTGGGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTGGAGCTGCTGCTGCAGCTaGATCACTGCCAATACATAC +
Preference number: 4 (lower is better)
Translates to: MACRDLGYPHPLSCYCCWSCCCS*ITANTY
Trigger: GTATGTATTGGCAGTGATCCAGCTGCAGCAGCAGCT...CCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCAGGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR GCA 90 bp CCATCTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAAGTGGTGCACAGCCTTaGGGTGATCCTTCATGTCTC +
Preference number: 4 (lower is better)
Translates to: PSGASSPWLPPSVLSQGQSGAQP*GDPSCL
Trigger: GAGACATGAAGGATCACCGCAAGGCTGTGCACCACT...TTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp CAGGGGCTTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATGAAGTCCCCCAGATCTTaGAGCACCTGGGACACTAGC +
Preference number: 4 (lower is better)
Translates to: QGLEGGEVSGSNRWLLGMKSPRS*STWDTS
Trigger: GCTAGTGTCCCAGGTGCTCCAAGATCTGGGGGACTT...CATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp CAGGGGCTTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATGAAGCCTCAGCTGCCTTaGGAAAGTCACCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: QGLEGGEVSGSNRWLLGMKPQLP*ESHPLW
Trigger: CCAAAGCGGGTGACTTTCCCAAGGCAGCTGAGGCTT...CATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp TATGTCTCAGTCTTTTCTGCGATGGCCTGCAGGGACTaGGGTTATCCTCATCCTCTGAGCTGCTACTGCTGC +
Preference number: 4 (lower is better)
Translates to: YVSVFSAMACRD*GYPHPLSCYCC
Trigger: GCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCAGGCCATCGCAGAAAAGACTGAGACATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
3UTR CAA 72 bp GTCTCGGTCTTTGGTGCTCAGGTCTTTGGTGCACAGTaGCAACTCCTGCAACTGCACGAAGATCTTGTCCCA +
Preference number: 4 (lower is better)
Translates to: VSVFGAQVFGAQ*QLLQLHEDLVP
Trigger: TGGGACAAGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR TCA 90 bp TTTTACAGCTCACATCGCCCACCCTTTTCGCAGAGAGCTGACACAAATGAGATAACAGGTCCAGAGAGGTaGGTGAGGGGCAGCAAGGGA +
Preference number: 4 (lower is better)
Translates to: FYSSHRPPFSQRADTNEITGPER*VRGSKG
Trigger: TCCCTTGCTGCCCCTCACTCACCTCTCTGGACCTGT...TATCTCATTTGTGTCAGCTCTCTGCGAAAAGGGTGGGCGATGTGAGCTGTAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR TCA 90 bp TTTAAAGAAGAGCTTGGAACTTTGGTCCATTGTGCACGCACCCTCTGGCAGTCTGCACCCTGGAGGCAGTaGGTCTCGAGTTTGATGCCA +
Preference number: 4 (lower is better)
Translates to: FKEELGTLVHCARTLWQSAPWRQ*VSSLMP
Trigger: TGGCATCAAACTCGAGACTCACTGCCTCCAGGGTGC...AGACTGCCAGAGGGTGCGTGCACAATGGACCAAAGTTCCAAGCTCTTCTTTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR CCA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCTCATGTCTCCCAGTGTaGTGGCCAGGGATACGTGGA +
Preference number: 4 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFSCLPV*WPGIRG
Trigger: TCCACGTATCCCTGGCCACCACACTGGGAGACATGA...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR TCA 90 bp TCAGAGGCATTTAAAGAAGAGCTTGGAACTTTGGTCCATTGTGCACGCACCCTCAGTGAGTCTCGAGTTTaGTGCCATCTTGGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: SEAFKEELGTLVHCARTLSESRV*CHLGSR
Trigger: CCTGGAACCAAGATGGCATCAAACTCGAGACTCACT...GAGGGTGCGTGCACAATGGACCAAAGTTCCAAGCTCTTCTTTAAATGCCTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR TCA 90 bp CTGGAGCCTCTTCTCCATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCAACAAGGAATCTCTTaGTTGGCAGTGGTCATATAT +
Preference number: 4 (lower is better)
Translates to: LEPLLHGCRLLSCLKVKVQQGIS*LAVVIY
Trigger: ATATATGACCACTGCCAATCAAGAGATTCCTTGTTG...GACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp ATGGCCTGCAGGGACTTGGGTTATCCTCATCCTCTGAGCTGCTACTGCTGCTGGAAGGAATCTCTTGATTaGCAGTGGTCATATATATCC +
Preference number: 4 (lower is better)
Translates to: MACRDLGYPHPLSCYCCWKESLD*QWSYIS
Trigger: GGATATATATGACCACTGCCAATCAAGAGATTCCTT...CCAGCAGCAGTAGCAGCTCAGAGGATGAGGATAACCCAAGTCCCTGCAGGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR TCA 90 bp CAGGGGCTTGAGGGAGGAGAGGTCTCAGGGTCAAATAGATGGTTACTTGGAATGGAAAGATGCTCTTTTTaGAGTAGTTGTTGCACAGGG +
Preference number: 4 (lower is better)
Translates to: QGLEGGEVSGSNRWLLGMERCSF*SSCCTG
Trigger: CCCTGTGCAACAACTACTTCAAAAAGAGCATCTTTC...CATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CCA 90 bp ATTCAAGCTGCCATCTCCTGCTTGAGTCCGTGCACACCAACCATCAAGACTTGTTCTCTTGATTGGCAGTaGTCATATATATCCAGATGG +
Preference number: 4 (lower is better)
Translates to: IQAAISCLSPCTPTIKTCSLDWQ*SYISRW
Trigger: CCATCTGGATATATATGACCACTGCCAATCAAGAGA...ACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAGCTTGAAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS GCA 90 bp GCTAACACCTCATCGTTGCTCTGCAGCACGTCAGGGATGGGGTCCTaGGGGGCCAGCAGTGCGCCATCCTTCCGCAGGGTGAGCCTTGGG +
Preference number: 5 (lower is better)
Translates to: ANTSSLLCSTSGMGS*GASSAPSFRRVSLG
Trigger: CCCAAGGCTCACCCTGCGGAAGGATGGCGCACTGCTGGCCCCGCAGGACCCCATCCCTGACGTGCTGCAGAGCAACGATGAGGTGTTAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 90 bp GGCAGTAGGCCGCCTCCTCGCGCAGCTGTCCATTCCTCTGGGCCCTaGTCTTGGCCTTGCTCAGCTGGCGAAGCTCCTGTTCCAGGGTCA +
Preference number: 5 (lower is better)
Translates to: GSRPPPRAAVHSSGP*SWPCSAGEAPVPGS
Trigger: TGACCCTGGAACAGGAGCTTCGCCAGCTGAGCAAGGCCAAGACCAGGGCCCAGAGGAATGGACAGCTGCGCGAGGAGGCGGCCTACTGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS TCA 90 bp ATAGCACGGGCACATTCCCGGGCCCCTTCTAAGCAGCGCATGGCCTaGGAGTGCTGCCCTCCGCGCCAGTGGATGGCACCCAGGTTGTAT +
Preference number: 5 (lower is better)
Translates to: IARAHSRAPSKQRMA*ECCPPRQWMAPRLY
Trigger: ATACAACCTGGGTGCCATCCACTGGCGCGGAGGGCAGCACTCTCAGGCCATGCGCTGCTTAGAAGGGGCCCGGGAATGTGCCCGTGCTAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 90 bp CACAAGGCTAGGGAGCAGGCACTGAACGAAGGGCTGGAACTCTGGTaGTCCATGGCATGCAGCACTTGCTGGTGCTCCCCTTGCCCCAGG +
Preference number: 5 (lower is better)
Translates to: HKAREQALNEGLELW*SMACSTCWCSPCPR
Trigger: CCTGGGGCAAGGGGAGCACCAGCAAGTGCTGCATGCCATGGACCACCAGAGTTCCAGCCCTTCGTTCAGTGCCTGCTCCCTAGCCTTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 90 bp TGGCACAAGGCTAGGGAGCAGGCACTGAACGAAGGGCTGGAACTCTaGTGGTCCATGGCATGCAGCACTTGCTGGTGCTCCCCTTGCCCC +
Preference number: 5 (lower is better)
Translates to: WHKAREQALNEGLEL*WSMACSTCWCSPCP
Trigger: GGGGCAAGGGGAGCACCAGCAAGTGCTGCATGCCATGGACCACCAGAGTTCCAGCCCTTCGTTCAGTGCCTGCTCCCTAGCCTTGTGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 90 bp CGGAGTGCTGTGTGTAACTTGAGGGCCCTCAGCAGGGGTGTGAGCTaGGCTTGGCACAAGGCTAGGGAGCAGGCACTGAACGAAGGGCTG +
Preference number: 5 (lower is better)
Translates to: RSAVCNLRALSRGVS*AWHKAREQALNEGL
Trigger: CAGCCCTTCGTTCAGTGCCTGCTCCCTAGCCTTGTGCCAAGCCCAGCTCACACCCCTGCTGAGGGCCCTCAAGTTACACACAGCACTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS TCA 90 bp GGCACAGCTGACCTCGGGGTTGGCAGACAGGTCCAGAGAGGTGAGTaGGGGGCAGCAAGGGAGACATCTGCTCAGTTCTCTCACGGCCTT +
Preference number: 5 (lower is better)
Translates to: GTADLGVGRQVQRGE*GAARETSAQFSHGL
Trigger: AAGGCCGTGAGAGAACTGAGCAGATGTCTCCCTTGCTGCCCCTCACTCACCTCTCTGGACCTGTCTGCCAACCCCGAGGTCAGCTGTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165163.8
ENSMUST00000168185.8
CDS GCA 90 bp AGACGGTCCTCGGAAGGAACAGCCTTTCTCTGGGAAGCATCCGCTTaGACCCACTCCAGAGCGTTGCCCTTGCGCAGCCTCAGTTCTTCC +
Preference number: 5 (lower is better)
Translates to: RRSSEGTAFLWEASA*THSRALPLRSLSSS
Trigger: GGAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGGAGTGGGTGCAAGCGGATGCTTCCCAGAGAAAGGCTGTTCCTTCCGAGGACCGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS GCA 90 bp ACAGAGCTTAGGTCCAGACGTTTGAGGGTACAGGCGGGTAAGGTCTaGAGCACCCTCGCCAGGGCAGGAGCGCCGAGCAGATTGTACGAT +
Preference number: 5 (lower is better)
Translates to: TELRSRRLRVQAGKV*STLARAGAPSRLYD
Trigger: ATCGTACAATCTGCTCGGCGCTCCTGCCCTGGCGAGGGTGCTGCAGACCTTACCCGCCTGTACCCTCAAACGTCTGGACCTAAGCTCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 90 bp GGGTGCGGCCAATGGTGGCCCAGGCTCGCTGTAGTTCAGTGTGGTTaGACAGGGAACCAGCCAGATCCAGGTAGAGATGCTGGTGCTTCA +
Preference number: 5 (lower is better)
Translates to: GCGQWWPRLAVVQCG*TGNQPDPGRDAGAS
Trigger: TGAAGCACCAGCATCTCTACCTGGATCTGGCTGGTTCCCTGTCCAACCACACTGAACTACAGCGAGCCTGGGCCACCATTGGCCGCACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CCA 90 bp CTAAGCAGCGCATGGCCTGAGAGTGCTGCCCTCCGCGCCAGTGGATaGCACCCAGGTTGTATCGGGCCCGGAACAGATCTTCATAGAGAT +
Preference number: 5 (lower is better)
Translates to: LSSAWPESAALRASG*HPGCIGPGTDLHRD
Trigger: ATCTCTATGAAGATCTGTTCCGGGCCCGATACAACCTGGGTGCCATCCACTGGCGCGGAGGGCAGCACTCTCAGGCCATGCGCTGCTTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 90 bp GTTTTCAGGTGCACAGCATCTTGGAAGGCACCGCCCAGGGCAGCCTaGTGGCTCAGGAAGAAACTGGAGCTGAAGCCACAGGCCTGTAGG +
Preference number: 5 (lower is better)
Translates to: VFRCTASWKAPPRAA*WLRKKLELKPQACR
Trigger: CCTACAGGCCTGTGGCTTCAGCTCCAGTTTCTTCCTGAGCCACCAGGCTGCCCTGGGCGGTGCCTTCCAAGATGCTGTGCACCTGAAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS GCA 90 bp TTCTCTGGGAAGCATCCGCTTGCACCCACTCCAGAGCGTTGCCCTTaGGCAGCCTCAGTTCTTCCTCATAGTGGTGCACAGCCTTGCGGT +
Preference number: 5 (lower is better)
Translates to: FSGKHPLAPTPERCP*AASVLPHSGAQPCG
Trigger: ACCGCAAGGCTGTGCACCACTATGAGGAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGGAGTGGGTGCAAGCGGATGCTTCCCAGAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS GCA 90 bp CAGCCTTTCTCTGGGAAGCATCCGCTTGCACCCACTCCAGAGCGTTaGCCTTGCGCAGCCTCAGTTCTTCCTCATAGTGGTGCACAGCCT +
Preference number: 5 (lower is better)
Translates to: QPFSGKHPLAPTPER*PCAASVLPHSGAQP
Trigger: AGGCTGTGCACCACTATGAGGAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGGAGTGGGTGCAAGCGGATGCTTCCCAGAGAAAGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS GCA 90 bp GTTCAGCAGCTCAGCCAAGTGCAGCTGCTTCTGGTAAGCCTCAGCTaGCTTGGGAAAGTCACCCGCTTTGGAGAACAGGTCCCCCAACTG +
Preference number: 5 (lower is better)
Translates to: VQQLSQVQLLLVSLS*LGKVTRFGEQVPQL
Trigger: CAGTTGGGGGACCTGTTCTCCAAAGCGGGTGACTTTCCCAAGGCAGCTGAGGCTTACCAGAAGCAGCTGCACTTGGCTGAGCTGCTGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS GCA 90 bp TGCCCTTGCGCAGCCTCAGTTCTTCCTCATAGTGGTGCACAGCCTTaGGGTGATCCTTCATGTCTCCCAGTGTGGTGGCCAGGGATACGT +
Preference number: 5 (lower is better)
Translates to: CPCAASVLPHSGAQP*GDPSCLPVWWPGIR
Trigger: ACGTATCCCTGGCCACCACACTGGGAGACATGAAGGATCACCGCAAGGCTGTGCACCACTATGAGGAAGAACTGAGGCTGCGCAAGGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 90 bp CGTTCTCCAATCTTGCGGTGGGCCACAGCGCAGCCTAGAGTGTCCTaGACGCTCTCTAGCAGATGTAGTTCCTGCTGGTGCTCCTCCAAA +
Preference number: 5 (lower is better)
Translates to: RSPILRWATAQPRVS*TLSSRCSSCWCSSK
Trigger: TTTGGAGGAGCACCAGCAGGAACTACATCTGCTAGAGAGCGTCCAGGACACTCTAGGCTGCGCTGTGGCCCACCGCAAGATTGGAGAACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 90 bp GCAGCTCAGCCAAGTGCAGCTGCTTCTGGTAAGCCTCAGCTGCCTTaGGAAAGTCACCCGCTTTGGAGAACAGGTCCCCCAACTGTTCAC +
Preference number: 5 (lower is better)
Translates to: AAQPSAAASGKPQLP*ESHPLWRTGPPTVH
Trigger: GTGAACAGTTGGGGGACCTGTTCTCCAAAGCGGGTGACTTTCCCAAGGCAGCTGAGGCTTACCAGAAGCAGCTGCACTTGGCTGAGCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS-3UTR CAA 90 bp CTCGGTCTTTGGTGCTCAGGTCTTTGGTGCACAGTTGCAACTCCTGCAACTGCACAGCTGACCTCGGGGTaGGCAGACAGGTCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: LGLWCSGLWCTVATPATAQLTSG*ADRSRE
Trigger: CTCTCTGGACCTGTCTGCCAACCCCGAGGTCAGCTG...TGCAGTTGCAGGAGTTGCAACTGTGCACCAAAGACCTGAGCACCAAAGACCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR CAA 90 bp GCTGCGGGTCAGAGGTGTATCTACCTCCAGCCATTCCCCAGCCAGGTATTCCTCTTCTTCAGGGCTCGTTaGGCAGCTAAGAAGTCCCCC +
Preference number: 5 (lower is better)
Translates to: AAGQRCIYLQPFPSQVFLFFRAR*AAKKSP
Trigger: GGGGGACTTCTTAGCTGCCAAACGAGCCCTGAAGAA...GAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACACCTCTGACCCGCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CAA 90 bp GAGAAAAACACAAGGTCGGTGGCTGCCTACCACATCCAGCTGCCCACAGCCAATTCCAGAGCGTTGCCCTaGCGCAGCCTCAGTTCTTCC +
Preference number: 5 (lower is better)
Translates to: EKNTRSVAAYHIQLPTANSRALP*RSLSSS
Trigger: GGAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGGA...ATTGGCTGTGGGCAGCTGGATGTGGTAGGCAGCCACCGACCTTGTGTTTTTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS TCA 90 bp GGACAGCTAGGGCTACATAGAGAAACCCTGATAGGCCAAGGAAGCTaGGGCCTTGGGACCGCTCTTGGAGGGCAGACAAGAGCTCCTCTA +
Preference number: 5 (lower is better)
Translates to: GQLGLHRETLIGQGS*GLGTALGGQTRAPL
Trigger: TAGAGGAGCTCTTGTCTGCCCTCCAAGAGCGGTCCCAAGGCCTCAGCTTCCTTGGCCTATCAGGGTTTCTCTATGTAGCCCTAGCTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS CCA 90 bp CAGTGTGGTGGCCAGGGATACGTGGATAACAGCCAGCTCCAGATCTaGTCTGTTCAGCAGCTCAGCCAAGTGCAGCTGCTTCTGGTAAGC +
Preference number: 5 (lower is better)
Translates to: QCGGQGYVDNSQLQI*SVQQLSQVQLLLVS
Trigger: GCTTACCAGAAGCAGCTGCACTTGGCTGAGCTGCTGAACAGACCAGATCTGGAGCTGGCTGTTATCCACGTATCCCTGGCCACCACACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS-3UTR CAA 90 bp AGCTCACATCGCCCACCCTTTTCGCAGAGAGCTGACACAAATGAGATAGCAGCAAAGGAAGCTGAGGCCTaGGGACCGCTCTTGGAGGGC +
Preference number: 5 (lower is better)
Translates to: SSHRPPFSQRADTNEIAAKEAEA*GPLLEG
Trigger: GCCCTCCAAGAGCGGTCCCAAGGCCTCAGCTTCCTT...TGCTGCTATCTCATTTGTGTCAGCTCTCTGCGAAAAGGGTGGGCGATGTGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS-3UTR CAA 90 bp AGGGCAGGGGAGCTGCGGGAAGCTTGGCCTGAGGAGGCCATCTGGAGCCTCTTCGCAACAAGGAATCTCTaGATTGGCAGTGGTCATATA +
Preference number: 5 (lower is better)
Translates to: RAGELREAWPEEAIWSLFATRNL*IGSGHI
Trigger: TATATGACCACTGCCAATCAAGAGATTCCTTGTTGC...GAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCCTGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS-3UTR CAA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCCTCTGGGCCCTGGTCTaGGCCTTGCTCAGCTGGCGA +
Preference number: 5 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFLWALV*ALLSWR
Trigger: TCGCCAGCTGAGCAAGGCCAAGACCAGGGCCCAGAG...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS TCA 90 bp AACTGCACGAAGATCTTGTCCCAGAGGTCAGAGTTCAGCGGCCCTTaGATAGAGCAGCCTGATAGGCCAAGGAAGCTGAGGCCTTGGGAC +
Preference number: 5 (lower is better)
Translates to: NCTKILSQRSEFSGP*IEQPDRPRKLRPWD
Trigger: GTCCCAAGGCCTCAGCTTCCTTGGCCTATCAGGCTGCTCTATTCAAGGGCCGCTGAACTCTGACCTCTGGGACAAGATCTTCGTGCAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 90 bp TCTCTCACGGCCTTGTCACCCAGGCAGTTTGCGGACAGGGTTAGGTaGGCCAGAGCACAGCCTTCCTTGGTCAAGTATTTGATAACAGGC +
Preference number: 5 (lower is better)
Translates to: SLTALSPRQFADRVR*ARAQPSLVKYLITG
Trigger: GCCTGTTATCAAATACTTGACCAAGGAAGGCTGTGCTCTGGCCCACCTAACCCTGTCCGCAAACTGCCTGGGTGACAAGGCCGTGAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS-3UTR CAA 90 bp ATTCAAGCTGCCATCTCCTGCTTGAGTCCGTGCACACCAACCATCAAGACTTGTAGCCGTTCTCCAATCTaGCGGTGGGCCACAGCGCAG +
Preference number: 5 (lower is better)
Translates to: IQAAISCLSPCTPTIKTCSRSPI*RWATAQ
Trigger: CTGCGCTGTGGCCCACCGCAAGATTGGAGAACGGCT...ACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAGCTTGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS TCA 90 bp CAGAAGCAAAGGCTGGCCTGCTGCATAATTTTCCTTGTTGGGTCCTaGGGTCCTAGGCACGCTGGGGTTCTCTGCAGGCTCTGCATTCAA +
Preference number: 5 (lower is better)
Translates to: QKQRLACCIIFLVGS*GPRHAGVLCRLCIQ
Trigger: TTGAATGCAGAGCCTGCAGAGAACCCCAGCGTGCCTAGGACCTCAGGACCCAACAAGGAAAATTATGCAGCAGGCCAGCCTTTGCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 90 bp TTGATTGGCAGTGGTCATATATATCCAGATGGGTGCGGCCAATGGTaGCCCAGGCTCGCTGTAGTTCAGTGTGGTTGGACAGGGAACCAG +
Preference number: 5 (lower is better)
Translates to: LIGSGHIYPDGCGQW*PRLAVVQCGWTGNQ
Trigger: CTGGTTCCCTGTCCAACCACACTGAACTACAGCGAGCCTGGGCCACCATTGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CCA 90 bp CTCTTGATTGGCAGTGGTCATATATATCCAGATGGGTGCGGCCAATaGTGGCCCAGGCTCGCTGTAGTTCAGTGTGGTTGGACAGGGAAC +
Preference number: 5 (lower is better)
Translates to: LLIGSGHIYPDGCGQ*WPRLAVVQCGWTGN
Trigger: GTTCCCTGTCCAACCACACTGAACTACAGCGAGCCTGGGCCACCATTGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CCA 90 bp GCCTTCTTCAGGGCTCGTTTGGCAGCTAAGAAGTCCCCCAGATCTTaGAGCACCTGGGACACTAGCACGCAACATTCACTCTCCATGAAT +
Preference number: 5 (lower is better)
Translates to: AFFRARLAAKKSPRS*STWDTSTQHSLSMN
Trigger: ATTCATGGAGAGTGAATGTTGCGTGCTAGTGTCCCAGGTGCTCCAAGATCTGGGGGACTTCTTAGCTGCCAAACGAGCCCTGAAGAAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS GCA 90 bp ACAAGGAATCTCTTGATTGGCAGTGGTCATATATATCCAGATGGGTaGGGCCAATGGTGGCCCAGGCTCGCTGTAGTTCAGTGTGGTTGG +
Preference number: 5 (lower is better)
Translates to: TRNLLIGSGHIYPDG*GQWWPRLAVVQCGW
Trigger: CCAACCACACTGAACTACAGCGAGCCTGGGCCACCATTGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAAGAGATTCCTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CCA 90 bp TGCAACAAGGAATCTCTTGATTGGCAGTGGTCATATATATCCAGATaGGTGCGGCCAATGGTGGCCCAGGCTCGCTGTAGTTCAGTGTGG +
Preference number: 5 (lower is better)
Translates to: CNKESLDWQWSYISR*VRPMVAQARCSSVW
Trigger: CCACACTGAACTACAGCGAGCCTGGGCCACCATTGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAAGAGATTCCTTGTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CCA 90 bp TCAAAGGCAGCTTGTGCCTGCAACAAGGAATCTCTTGATTGGCAGTaGTCATATATATCCAGATGGGTGCGGCCAATGGTGGCCCAGGCT +
Preference number: 5 (lower is better)
Translates to: SKAACACNKESLDWQ*SYISRWVRPMVAQA
Trigger: AGCCTGGGCCACCATTGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAAGAGATTCCTTGTTGCAGGCACAAGCTGCCTTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS-3UTR CAA 90 bp ATGGTTGCCGCCTTCTGTCTTGTCTCAAGGTCAAGGTCCCTGAAGTACAACTTCTGTAGTTCAGTGTGGTaGGACAGGGAACCAGCCAGA +
Preference number: 5 (lower is better)
Translates to: MVAAFCLVSRSRSLKYNFCSSVW*DREPAR
Trigger: TCTGGCTGGTTCCCTGTCCAACCACACTGAACTACA...GAAGTTGTACTTCAGGGACCTTGACCTTGAGACAAGACAGAAGGCGGCAACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS TCA 90 bp GATCTTCATAGAGATGGTTCTGCTCAGCAAGAAAGATGCTCTTTTTaGAGTAGTTGTTGCACAGGGCTGTCTGTTGCAGGCTCTCACAGG +
Preference number: 5 (lower is better)
Translates to: DLHRDGSAQQERCSF*SSCCTGLSVAGSHR
Trigger: CCTGTGAGAGCCTGCAACAGACAGCCCTGTGCAACAACTACTTCAAAAAGAGCATCTTTCTTGCTGAGCAGAACCATCTCTATGAAGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS-3UTR CAA 90 bp TTTCTTTTTCTTCTGGAGGAAACGGCAGGACTAGGATCAGAGGCATTTAAAGAAGAGTTTGATGCCATCTaGGTTCCAGGACAGCTAGGG +
Preference number: 5 (lower is better)
Translates to: FLFLLEETAGLGSEAFKEEFDAI*VPGQLG
Trigger: CCCTAGCTGTCCTGGAACCAAGATGGCATCAAACTC...TTCTTTAAATGCCTCTGATCCTAGTCCTGCCGTTTCCTCCAGAAGAAAAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS TCA 72 bp GCACATTCCCGGGCCCCTTCTAAGCAGCGCATGGCCTaGGAGTGCTGCCCTCCGCGCCAGTGGATGGCACCC +
Preference number: 6 (lower is better)
Translates to: AHSRAPSKQRMA*ECCPPRQWMAP
Trigger: GGGTGCCATCCACTGGCGCGGAGGGCAGCACTCTCAGGCCATGCGCTGCTTAGAAGGGGCCCGGGAATGTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS GCA 72 bp AGGTCCAGACGTTTGAGGGTACAGGCGGGTAAGGTCTaGAGCACCCTCGCCAGGGCAGGAGCGCCGAGCAGA +
Preference number: 6 (lower is better)
Translates to: RSRRLRVQAGKV*STLARAGAPSR
Trigger: TCTGCTCGGCGCTCCTGCCCTGGCGAGGGTGCTGCAGACCTTACCCGCCTGTACCCTCAAACGTCTGGACCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp CCGCCTCCTCGCGCAGCTGTCCATTCCTCTGGGCCCTaGTCTTGGCCTTGCTCAGCTGGCGAAGCTCCTGTT +
Preference number: 6 (lower is better)
Translates to: PPPRAAVHSSGP*SWPCSAGEAPV
Trigger: AACAGGAGCTTCGCCAGCTGAGCAAGGCCAAGACCAGGGCCCAGAGGAATGGACAGCTGCGCGAGGAGGCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CAA 90 bp TGCGCCATCCTTCCGCAGGGTGAGCCTTGGGAGCAGCCCACACGTTaGGAAATAGCGCTGGGCGGCTTGCTCTGTGAGCCAAGCCACGGG +
Preference number: 6 (lower is better)
Translates to: CAILPQGEPWEQPTR*EIALGGLLCEPSHG
Trigger: CCCGTGGCTTGGCTCACAGAGCAAGCCGCCCAGCGCTATTTCCAAACGTGTGGGCTGCTCCCAAGGCTCACCCTGCGGAAGGATGGCGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp GCATGGCCTGAGAGTGCTGCCCTCCGCGCCAGTGGATaGCACCCAGGTTGTATCGGGCCCGGAACAGATCTT +
Preference number: 6 (lower is better)
Translates to: AWPESAALRASG*HPGCIGPGTDL
Trigger: AAGATCTGTTCCGGGCCCGATACAACCTGGGTGCCATCCACTGGCGCGGAGGGCAGCACTCTCAGGCCATGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 72 bp CTAACACCTCATCGTTGCTCTGCAGCACGTCAGGGATaGGGTCCTGCGGGGCCAGCAGTGCGCCATCCTTCC +
Preference number: 6 (lower is better)
Translates to: LTPHRCSAARQG*GPAGPAVRHPS
Trigger: GGAAGGATGGCGCACTGCTGGCCCCGCAGGACCCCATCCCTGACGTGCTGCAGAGCAACGATGAGGTGTTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 72 bp CCTGCAAGGCGTAGCTCCCGGAGTGCTGTGTGTAACTaGAGGGCCCTCAGCAGGGGTGTGAGCTGGGCTTGG +
Preference number: 6 (lower is better)
Translates to: PARRSSRSAVCN*RALSRGVSWAW
Trigger: CCAAGCCCAGCTCACACCCCTGCTGAGGGCCCTCAAGTTACACACAGCACTCCGGGAGCTACGCCTTGCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 90 bp GAGCCTTGGGAGCAGCCCACACGTTTGGAAATAGCGCTGGGCGGCTaGCTCTGTGAGCCAAGCCACGGGGCGGATGTCACTCTGGGGAAC +
Preference number: 6 (lower is better)
Translates to: EPWEQPTRLEIALGG*LCEPSHGADVTLGN
Trigger: GTTCCCCAGAGTGACATCCGCCCCGTGGCTTGGCTCACAGAGCAAGCCGCCCAGCGCTATTTCCAAACGTGTGGGCTGCTCCCAAGGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 90 bp CTCTCTAGCAGATGTAGTTCCTGCTGGTGCTCCTCCAAAGCGTCCTaGAAGCGGCCGTGGCTAGCCAGCAGCTCCCCCAGCTGGTGGCAG +
Preference number: 6 (lower is better)
Translates to: LSSRCSSCWCSSKAS*KRPWLASSSPSWWQ
Trigger: CTGCCACCAGCTGGGGGAGCTGCTGGCTAGCCACGGCCGCTTCAAGGACGCTTTGGAGGAGCACCAGCAGGAACTACATCTGCTAGAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CAA 90 bp AGTCGGTTCCCTGCAAGGCGTAGCTCCCGGAGTGCTGTGTGTAACTaGAGGGCCCTCAGCAGGGGTGTGAGCTGGGCTTGGCACAAGGCT +
Preference number: 6 (lower is better)
Translates to: SRFPARRSSRSAVCN*RALSRGVSWAWHKA
Trigger: AGCCTTGTGCCAAGCCCAGCTCACACCCCTGCTGAGGGCCCTCAAGTTACACACAGCACTCCGGGAGCTACGCCTTGCAGGGAACCGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 90 bp CCCGAGTTGCTCTTGCTGGCTGCCACAGAGCTTAGGTCCAGACGTTaGAGGGTACAGGCGGGTAAGGTCTGCAGCACCCTCGCCAGGGCA +
Preference number: 6 (lower is better)
Translates to: PELLLLAATELRSRR*RVQAGKVCSTLARA
Trigger: TGCCCTGGCGAGGGTGCTGCAGACCTTACCCGCCTGTACCCTCAAACGTCTGGACCTAAGCTCTGTGGCAGCCAGCAAGAGCAACTCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 72 bp GAGCAGCCCACACGTTTGGAAATAGCGCTGGGCGGCTaGCTCTGTGAGCCAAGCCACGGGGCGGATGTCACT +
Preference number: 6 (lower is better)
Translates to: EQPTRLEIALGG*LCEPSHGADVT
Trigger: AGTGACATCCGCCCCGTGGCTTGGCTCACAGAGCAAGCCGCCCAGCGCTATTTCCAAACGTGTGGGCTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 72 bp CTTCCGCAGGGTGAGCCTTGGGAGCAGCCCACACGTTaGGAAATAGCGCTGGGCGGCTTGCTCTGTGAGCCA +
Preference number: 6 (lower is better)
Translates to: LPQGEPWEQPTR*EIALGGLLCEP
Trigger: TGGCTCACAGAGCAAGCCGCCCAGCGCTATTTCCAAACGTGTGGGCTGCTCCCAAGGCTCACCCTGCGGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS TCA 72 bp CACACGTTTGGAAATAGCGCTGGGCGGCTTGCTCTGTaGGCCAAGCCACGGGGCGGATGTCACTCTGGGGAA +
Preference number: 6 (lower is better)
Translates to: HTFGNSAGRLAL*AKPRGGCHSGE
Trigger: TTCCCCAGAGTGACATCCGCCCCGTGGCTTGGCTCACAGAGCAAGCCGCCCAGCGCTATTTCCAAACGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS GCA 72 bp TCGGAAGGAACAGCCTTTCTCTGGGAAGCATCCGCTTaGACCCACTCCAGAGCGTTGCCCTTGCGCAGCCTC +
Preference number: 6 (lower is better)
Translates to: SEGTAFLWEASA*THSRALPLRSL
Trigger: GAGGCTGCGCAAGGGCAACGCTCTGGAGTGGGTGCAAGCGGATGCTTCCCAGAGAAAGGCTGTTCCTTCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS GCA 72 bp GGTCCCACGAAGTTACCTCAGCTAACACCTCATCGTTaGTCTGCAGCACGTCAGGGATGGGGTCCTGCGGGG +
Preference number: 6 (lower is better)
Translates to: GPTKLPQLTPHR*SAARQGWGPAG
Trigger: CCCCGCAGGACCCCATCCCTGACGTGCTGCAGAGCAACGATGAGGTGTTAGCTGAGGTAACTTCGTGGGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp GCTAGGGAGCAGGCACTGAACGAAGGGCTGGAACTCTaGTGGTCCATGGCATGCAGCACTTGCTGGTGCTCC +
Preference number: 6 (lower is better)
Translates to: AREQALNEGLEL*WSMACSTCWCS
Trigger: GGAGCACCAGCAAGTGCTGCATGCCATGGACCACCAGAGTTCCAGCCCTTCGTTCAGTGCCTGCTCCCTAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp TGCACAGCATCTTGGAAGGCACCGCCCAGGGCAGCCTaGTGGCTCAGGAAGAAACTGGAGCTGAAGCCACAG +
Preference number: 6 (lower is better)
Translates to: CTASWKAPPRAA*WLRKKLELKPQ
Trigger: CTGTGGCTTCAGCTCCAGTTTCTTCCTGAGCCACCAGGCTGCCCTGGGCGGTGCCTTCCAAGATGCTGTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 90 bp CAGACGGTCCTCGGAAGGAACAGCCTTTCTCTGGGAAGCATCCGCTaGCACCCACTCCAGAGCGTTGCCCTTGCGCAGCCTCAGTTCTTC +
Preference number: 6 (lower is better)
Translates to: QTVLGRNSLSLGSIR*HPLQSVALAQPQFF
Trigger: GAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGGAGTGGGTGCAAGCGGATGCTTCCCAGAGAAAGGCTGTTCCTTCCGAGGACCGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS CAA 90 bp AGTGAGGGGCAGCAAGGGAGACATCTGCTCAGTTCTCTCACGGCCTaGTCACCCAGGCAGTTTGCGGACAGGGTTAGGTGGGCCAGAGCA +
Preference number: 6 (lower is better)
Translates to: SEGQQGRHLLSSLTA*SPRQFADRVRWARA
Trigger: TGCTCTGGCCCACCTAACCCTGTCCGCAAACTGCCTGGGTGACAAGGCCGTGAGAGAACTGAGCAGATGTCTCCCTTGCTGCCCCTCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS TCA 72 bp TCTTGCTGGCTGCCACAGAGCTTAGGTCCAGACGTTTaGGGGTACAGGCGGGTAAGGTCTGCAGCACCCTCG +
Preference number: 6 (lower is better)
Translates to: SCWLPQSLGPDV*GYRRVRSAAPS
Trigger: CGAGGGTGCTGCAGACCTTACCCGCCTGTACCCTCAAACGTCTGGACCTAAGCTCTGTGGCAGCCAGCAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp ATCTTGCGGTGGGCCACAGCGCAGCCTAGAGTGTCCTaGACGCTCTCTAGCAGATGTAGTTCCTGCTGGTGC +
Preference number: 6 (lower is better)
Translates to: ILRWATAQPRVS*TLSSRCSSCWC
Trigger: GCACCAGCAGGAACTACATCTGCTAGAGAGCGTCCAGGACACTCTAGGCTGCGCTGTGGCCCACCGCAAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 72 bp TTCTCCATTTCAGCCAGCCGTTCTCCAATCTTGCGGTaGGCCACAGCGCAGCCTAGAGTGTCCTGGACGCTC +
Preference number: 6 (lower is better)
Translates to: FSISASRSPILR*ATAQPRVSWTL
Trigger: GAGCGTCCAGGACACTCTAGGCTGCGCTGTGGCCCACCGCAAGATTGGAGAACGGCTGGCTGAAATGGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CAA 72 bp CTCTTGCTGGCTGCCACAGAGCTTAGGTCCAGACGTTaGAGGGTACAGGCGGGTAAGGTCTGCAGCACCCTC +
Preference number: 6 (lower is better)
Translates to: LLLAATELRSRR*RVQAGKVCSTL
Trigger: GAGGGTGCTGCAGACCTTACCCGCCTGTACCCTCAAACGTCTGGACCTAAGCTCTGTGGCAGCCAGCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 72 bp TGCTCAGTTCTCTCACGGCCTTGTCACCCAGGCAGTTaGCGGACAGGGTTAGGTGGGCCAGAGCACAGCCTT +
Preference number: 6 (lower is better)
Translates to: CSVLSRPCHPGS*RTGLGGPEHSL
Trigger: AAGGCTGTGCTCTGGCCCACCTAACCCTGTCCGCAAACTGCCTGGGTGACAAGGCCGTGAGAGAACTGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 90 bp GGAGACATCTGCTCAGTTCTCTCACGGCCTTGTCACCCAGGCAGTTaGCGGACAGGGTTAGGTGGGCCAGAGCACAGCCTTCCTTGGTCA +
Preference number: 6 (lower is better)
Translates to: GDICSVLSRPCHPGS*RTGLGGPEHSLPWS
Trigger: TGACCAAGGAAGGCTGTGCTCTGGCCCACCTAACCCTGTCCGCAAACTGCCTGGGTGACAAGGCCGTGAGAGAACTGAGCAGATGTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 90 bp AGCAGCTCGTATGCGTCTCCAGCCTCCTCACGTGACAGGGCAATGTaGAACCAAGTCTTAGCTTCCTCCAGAGCGTTGCCCTTGCGCAGC +
Preference number: 6 (lower is better)
Translates to: SSSYASPASSRDRAM*NQVLASSRALPLRS
Trigger: GCTGCGCAAGGGCAACGCTCTGGAGGAAGCTAAGACTTGGTTCAACATTGCCCTGTCACGTGAGGAGGCTGGAGACGCATACGAGCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS GCA 72 bp TCCTGGACGCTCTCTAGCAGATGTAGTTCCTGCTGGTaGTCCTCCAAAGCGTCCTTGAAGCGGCCGTGGCTA +
Preference number: 6 (lower is better)
Translates to: SWTLSSRCSSCW*SSKASLKRPWL
Trigger: TAGCCACGGCCGCTTCAAGGACGCTTTGGAGGAGCACCAGCAGGAACTACATCTGCTAGAGAGCGTCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS GCA 72 bp AAGCATCCGCTTGCACCCACTCCAGAGCGTTGCCCTTaGGCAGCCTCAGTTCTTCCTCATAGTGGTGCACAG +
Preference number: 6 (lower is better)
Translates to: KHPLAPTPERCP*AASVLPHSGAQ
Trigger: CTGTGCACCACTATGAGGAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGGAGTGGGTGCAAGCGGATGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS GCA 72 bp TCTGGGAAGCATCCGCTTGCACCCACTCCAGAGCGTTaGCCTTGCGCAGCCTCAGTTCTTCCTCATAGTGGT +
Preference number: 6 (lower is better)
Translates to: SGKHPLAPTPER*PCAASVLPHSG
Trigger: ACCACTATGAGGAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGGAGTGGGTGCAAGCGGATGCTTCCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165190.2
CDS CCA 72 bp CCAAGTGCAGCTGCTTCTGGTAAGCCTCAGCTGCCTTaGGAAAGTCACCCGCTTTGGAGAACAGGTCCCCCA +
Preference number: 6 (lower is better)
Translates to: PSAAASGKPQLP*ESHPLWRTGPP
Trigger: TGGGGGACCTGTTCTCCAAAGCGGGTGACTTTCCCAAGGCAGCTGAGGCTTACCAGAAGCAGCTGCACTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 72 bp TACGATAAGGACAAGGTTTTCAGGTGCACAGCATCTTaGAAGGCACCGCCCAGGGCAGCCTGGTGGCTCAGG +
Preference number: 6 (lower is better)
Translates to: YDKDKVFRCTAS*KAPPRAAWWLR
Trigger: CCTGAGCCACCAGGCTGCCCTGGGCGGTGCCTTCCAAGATGCTGTGCACCTGAAAACCTTGTCCTTATCGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp ATAGAGCAGCCTGATAGGCCAAGGAAGCTGAGGCCTTaGGACCGCTCTTGGAGGGCAGACAAGAGCTCCTCT +
Preference number: 6 (lower is better)
Translates to: IEQPDRPRKLRP*DRSWRADKSSS
Trigger: AGAGGAGCTCTTGTCTGCCCTCCAAGAGCGGTCCCAAGGCCTCAGCTTCCTTGGCCTATCAGGCTGCTCTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 72 bp CAGCAAGGGAGACATCTGCTCAGTTCTCTCACGGCCTaGTCACCCAGGCAGTTTGCGGACAGGGTTAGGTGG +
Preference number: 6 (lower is better)
Translates to: QQGRHLLSSLTA*SPRQFADRVRW
Trigger: CCACCTAACCCTGTCCGCAAACTGCCTGGGTGACAAGGCCGTGAGAGAACTGAGCAGATGTCTCCCTTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 90 bp GGTAAGGTCTGCAGCACCCTCGCCAGGGCAGGAGCGCCGAGCAGATaGTACGATAAGGACAAGGTTTTCAGGTGCACAGCATCTTGGAAG +
Preference number: 6 (lower is better)
Translates to: GKVCSTLARAGAPSR*YDKDKVFRCTASWK
Trigger: CTTCCAAGATGCTGTGCACCTGAAAACCTTGTCCTTATCGTACAATCTGCTCGGCGCTCCTGCCCTGGCGAGGGTGCTGCAGACCTTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS TCA 72 bp GGGCTACATAGAGAAACCCTGATAGGCCAAGGAAGCTaGGGCCTTGGGACCGCTCTTGGAGGGCAGACAAGA +
Preference number: 6 (lower is better)
Translates to: GLHRETLIGQGS*GLGTALGGQTR
Trigger: TCTTGTCTGCCCTCCAAGAGCGGTCCCAAGGCCTCAGCTTCCTTGGCCTATCAGGGTTTCTCTATGTAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS GCA 72 bp GCAGCCTCAGTTCTTCCTCATAGTGGTGCACAGCCTTaGGGTGATCCTTCATGTCTCCCAGTGTGGTGGCCA +
Preference number: 6 (lower is better)
Translates to: AASVLPHSGAQP*GDPSCLPVWWP
Trigger: TGGCCACCACACTGGGAGACATGAAGGATCACCGCAAGGCTGTGCACCACTATGAGGAAGAACTGAGGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS GCA 72 bp AGTGGGTTCATACTCAAGTCCAGCTCCTCCAAGTTCTaGAAAGCAGCCTGGCCCGAGGAGCCTTCCACAAGC +
Preference number: 6 (lower is better)
Translates to: SGFILKSSSSKF*KAAWPEEPSTS
Trigger: GCTTGTGGAAGGCTCCTCGGGCCAGGCTGCTTTGCAGAACTTGGAGGAGCTGGACTTGAGTATGAACCCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp CAATGGTGGCCCAGGCTCGCTGTAGTTCAGTGTGGTTaGACAGGGAACCAGCCAGATCCAGGTAGAGATGCT +
Preference number: 6 (lower is better)
Translates to: QWWPRLAVVQCG*TGNQPDPGRDA
Trigger: AGCATCTCTACCTGGATCTGGCTGGTTCCCTGTCCAACCACACTGAACTACAGCGAGCCTGGGCCACCATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CCA 72 bp GGCAGTGGTCATATATATCCAGATGGGTGCGGCCAATaGTGGCCCAGGCTCGCTGTAGTTCAGTGTGGTTGG +
Preference number: 6 (lower is better)
Translates to: GSGHIYPDGCGQ*WPRLAVVQCGW
Trigger: CCAACCACACTGAACTACAGCGAGCCTGGGCCACCATTGGCCGCACCCATCTGGATATATATGACCACTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CCA 72 bp GGCCAGGGATACGTGGATAACAGCCAGCTCCAGATCTaGTCTGTTCAGCAGCTCAGCCAAGTGCAGCTGCTT +
Preference number: 6 (lower is better)
Translates to: GQGYVDNSQLQI*SVQQLSQVQLL
Trigger: AAGCAGCTGCACTTGGCTGAGCTGCTGAACAGACCAGATCTGGAGCTGGCTGTTATCCACGTATCCCTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 72 bp GCCTTGTCACCCAGGCAGTTTGCGGACAGGGTTAGGTaGGCCAGAGCACAGCCTTCCTTGGTCAAGTATTTG +
Preference number: 6 (lower is better)
Translates to: ALSPRQFADRVR*ARAQPSLVKYL
Trigger: CAAATACTTGACCAAGGAAGGCTGTGCTCTGGCCCACCTAACCCTGTCCGCAAACTGCCTGGGTGACAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS GCA 72 bp AGTAATTCTCCATTTCAGCCAGCCGTTCTCCAATCTTaGGGTGGGCCACAGCGCAGCCTAGAGTGTCCTGGA +
Preference number: 6 (lower is better)
Translates to: SNSPFQPAVLQS*GGPQRSLECPG
Trigger: TCCAGGACACTCTAGGCTGCGCTGTGGCCCACCGCAAGATTGGAGAACGGCTGGCTGAAATGGAGAATTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 72 bp AGGGCTCGTTTGGCAGCTAAGAAGTCCCCCAGATCTTaGAGCACCTGGGACACTAGCACGCAACATTCACTC +
Preference number: 6 (lower is better)
Translates to: RARLAAKKSPRS*STWDTSTQHSL
Trigger: GAGTGAATGTTGCGTGCTAGTGTCCCAGGTGCTCCAAGATCTGGGGGACTTCTTAGCTGCCAAACGAGCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CCA 72 bp TCCTTCATGTCTCCCAGTGTGGTGGCCAGGGATACGTaGATAACAGCCAGCTCCAGATCTGGTCTGTTCAGC +
Preference number: 6 (lower is better)
Translates to: SFMSPSVVARDT*ITASSRSGLFS
Trigger: GCTGAACAGACCAGATCTGGAGCTGGCTGTTATCCACGTATCCCTGGCCACCACACTGGGAGACATGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CAA 72 bp CAGGTCCCCCAACTGTTCACAGATAGCCATGGCACCTaGAAGATCATTGCCCTCAGCCTCTTCCAGCTGCTG +
Preference number: 6 (lower is better)
Translates to: QVPQLFTDSHGT*KIIALSLFQLL
Trigger: CAGCAGCTGGAAGAGGCTGAGGGCAATGATCTTCAAGGTGCCATGGCTATCTGTGAACAGTTGGGGGACCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8
CDS CAA 72 bp TATGCGTCTCCAGCCTCCTCACGTGACAGGGCAATGTaGAACCAAGTCTTAGCTTCCTCCAGAGCGTTGCCC +
Preference number: 6 (lower is better)
Translates to: YASPASSRDRAM*NQVLASSRALP
Trigger: GGGCAACGCTCTGGAGGAAGCTAAGACTTGGTTCAACATTGCCCTGTCACGTGAGGAGGCTGGAGACGCATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS TCA 72 bp AAGATCTTGTCCCAGAGGTCAGAGTTCAGCGGCCCTTaGATAGAGCAGCCTGATAGGCCAAGGAAGCTGAGG +
Preference number: 6 (lower is better)
Translates to: KILSQRSEFSGP*IEQPDRPRKLR
Trigger: CCTCAGCTTCCTTGGCCTATCAGGCTGCTCTATTCAAGGGCCGCTGAACTCTGACCTCTGGGACAAGATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS GCA 72 bp CTCTTGATTGGCAGTGGTCATATATATCCAGATGGGTaGGGCCAATGGTGGCCCAGGCTCGCTGTAGTTCAG +
Preference number: 6 (lower is better)
Translates to: LLIGSGHIYPDG*GQWWPRLAVVQ
Trigger: CTGAACTACAGCGAGCCTGGGCCACCATTGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CAA 90 bp AATCCCAGCACCCTGGAGGCAGTGAGTCTCGAGTTTGATGCCATCTaGGTTCCAGGACAGCTAGGGCTACATAGAGAAACCCTGATAGGC +
Preference number: 6 (lower is better)
Translates to: NPSTLEAVSLEFDAI*VPGQLGLHRETLIG
Trigger: GCCTATCAGGGTTTCTCTATGTAGCCCTAGCTGTCCTGGAACCAAGATGGCATCAAACTCGAGACTCACTGCCTCCAGGGTGCTGGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS CAA 90 bp GACAGGGTTAGGTGGGCCAGAGCACAGCCTTCCTTGGTCAAGTATTaGATAACAGGCTCTATGATACCCGAGTTGCTCTTGCTGGCTGCC +
Preference number: 6 (lower is better)
Translates to: DRVRWARAQPSLVKY*ITGSMIPELLLLAA
Trigger: GGCAGCCAGCAAGAGCAACTCGGGTATCATAGAGCCTGTTATCAAATACTTGACCAAGGAAGGCTGTGCTCTGGCCCACCTAACCCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp GAATCTCTTGATTGGCAGTGGTCATATATATCCAGATaGGTGCGGCCAATGGTGGCCCAGGCTCGCTGTAGT +
Preference number: 6 (lower is better)
Translates to: ESLDWQWSYISR*VRPMVAQARCS
Trigger: ACTACAGCGAGCCTGGGCCACCATTGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAAGAGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CAA 72 bp ACCCTGGAGGCAGTGAGTCTCGAGTTTGATGCCATCTaGGTTCCAGGACAGCTAGGGCTACATAGAGAAACC +
Preference number: 6 (lower is better)
Translates to: TLEAVSLEFDAI*VPGQLGLHRET
Trigger: GGTTTCTCTATGTAGCCCTAGCTGTCCTGGAACCAAGATGGCATCAAACTCGAGACTCACTGCCTCCAGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165163.8
CDS CAA 72 bp GCGGACAGGGTTAGGTGGGCCAGAGCACAGCCTTCCTaGGTCAAGTATTTGATAACAGGCTCTATGATACCC +
Preference number: 6 (lower is better)
Translates to: ADRVRWARAQPS*VKYLITGSMIP
Trigger: GGGTATCATAGAGCCTGTTATCAAATACTTGACCAAGGAAGGCTGTGCTCTGGCCCACCTAACCCTGTCCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CAA 90 bp AGGCAGTTTGCGGACAGGGTTAGGTGGGCCAGAGCACAGCCTTCCTaGGTCAAGTATTTGATAACAGGCTCTATGATACCCGAGTTGCTC +
Preference number: 6 (lower is better)
Translates to: RQFADRVRWARAQPS*VKYLITGSMIPELL
Trigger: GAGCAACTCGGGTATCATAGAGCCTGTTATCAAATACTTGACCAAGGAAGGCTGTGCTCTGGCCCACCTAACCCTGTCCGCAAACTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS CCA 72 bp GCTTGTGCCTGCAACAAGGAATCTCTTGATTGGCAGTaGTCATATATATCCAGATGGGTGCGGCCAATGGTG +
Preference number: 6 (lower is better)
Translates to: ACACNKESLDWQ*SYISRWVRPMV
Trigger: CACCATTGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAAGAGATTCCTTGTTGCAGGCACAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CCA 72 bp AAGGCAGCTTGTGCCTGCAACAAGGAATCTCTTGATTaGCAGTGGTCATATATATCCAGATGGGTGCGGCCA +
Preference number: 6 (lower is better)
Translates to: KAACACNKESLD*QWSYISRWVRP
Trigger: TGGCCGCACCCATCTGGATATATATGACCACTGCCAATCAAGAGATTCCTTGTTGCAGGCACAAGCTGCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CAA 72 bp AGGTGGGCCAGAGCACAGCCTTCCTTGGTCAAGTATTaGATAACAGGCTCTATGATACCCGAGTTGCTCTTG +
Preference number: 6 (lower is better)
Translates to: RWARAQPSLVKY*ITGSMIPELLL
Trigger: CAAGAGCAACTCGGGTATCATAGAGCCTGTTATCAAATACTTGACCAAGGAAGGCTGTGCTCTGGCCCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS TCA 72 bp CTCAAAGGCAGCTTGTGCCTGCAACAAGGAATCTCTTaGTTGGCAGTGGTCATATATATCCAGATGGGTGCG +
Preference number: 6 (lower is better)
Translates to: LKGSLCLQQGIS*LAVVIYIQMGA
Trigger: CGCACCCATCTGGATATATATGACCACTGCCAATCAAGAGATTCCTTGTTGCAGGCACAAGCTGCCTTTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165190.2
ENSMUST00000166974.2
ENSMUST00000168185.8
CDS CAA 72 bp TATTTGATAACAGGCTCTATGATACCCGAGTTGCTCTaGCTGGCTGCCACAGAGCTTAGGTCCAGACGTTTG +
Preference number: 6 (lower is better)
Translates to: YLITGSMIPELL*LAATELRSRRL
Trigger: CAAACGTCTGGACCTAAGCTCTGTGGCAGCCAGCAAGAGCAACTCGGGTATCATAGAGCCTGTTATCAAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168185.8
CDS TCA 72 bp AGAGATGGTTCTGCTCAGCAAGAAAGATGCTCTTTTTaGAGTAGTTGTTGCACAGGGCTGTCTGTTGCAGGC +
Preference number: 6 (lower is better)
Translates to: RDGSAQQERCSF*SSCCTGLSVAG
Trigger: GCCTGCAACAGACAGCCCTGTGCAACAACTACTTCAAAAAGAGCATCTTTCTTGCTGAGCAGAACCATCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165190.2
ENSMUST00000168185.8