RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TOMM40L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005674

Ensembl transcript IDs: ENSMUST00000005817.9, ENSMUST00000111326.8, ENSMUST00000111327.8, ENSMUST00000138184.8, ENSMUST00000143405.2, ENSMUST00000147246.2

Found 268 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGCCAGACAGGCACAGCGGCGGGCAGAGAAAGCATCTTTGCAACTaGATCAGCAGCAGAAAGAACTGGTCCAGATCCTCCTGGGGGCCC +
Preference number: 1 (lower is better)
Translates to: EPDRHSGGQRKHLCN*ISSRKNWSRSSWGP
Trigger: GGGCCCCCAGGAGGATCTGGACCAGTTCTTTCTGCTGCTGATTCAGTTGCAAAGATGCTTTCTCTGCCCGCCGCTGTGCCTGTCTGGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 90 bp CAGCCCACAGTGATGCTGAAGCCGCAATGGAATCTGTTTCGCCAGTaGTTGAGGAAGGCTCCAAGGGCTAGGGTGACAGGCAGGGGACGC +
Preference number: 1 (lower is better)
Translates to: QPTVMLKPQWNLFRQ*LRKAPRARVTGRGR
Trigger: GCGTCCCCTGCCTGTCACCCTAGCCCTTGGAGCCTTCCTCAATCACTGGCGAAACAGATTCCATTGCGGCTTCAGCATCACTGTGGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR CCA 90 bp CCACTCTGCCCATGGGACCTAGGAGTCATCCGGCAAGGTAGGCTCTaGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGTATCAGACTCA +
Preference number: 1 (lower is better)
Translates to: PLCPWDLGVIRQGRL*RGTKLVSGPRVSDS
Trigger: TGAGTCTGATACCCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGATGACTCCTAGGTCCCATGGGCAGAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR TCA 90 bp CGCTGCTGGTCTCAACAGCTTTGTCATCTCTCTTGCCTGACACAGTaGTACTGTCAGCAGAAGCCCTGGCATTGCGGCGAGCCAGACAGG +
Preference number: 1 (lower is better)
Translates to: RCWSQQLCHLSCLTQ*YCQQKPWHCGEPDR
Trigger: CCTGTCTGGCTCGCCGCAATGCCAGGGCTTCTGCTGACAGTATCACTGTGTCAGGCAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 90 bp ATCTGGGGAGGTGGAGTGGCCCCAACTGAAGGGATGGCTGAAAGGTaGTCGCTGCTGGTCTCAACAGCTTTGTCATCTCTCTTGCCTGAC +
Preference number: 1 (lower is better)
Translates to: IWGGGVAPTEGMAER*SLLVSTALSSLLPD
Trigger: GTCAGGCAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCCTTCAGTTGGGGCCACTCCACCTCCCCAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CCA 90 bp CCTCCTTCCTTATCTGGGGAGGTGGAGTGGCCCCAACTGAAGGGATaGCTGAAAGGTGCTCGCTGCTGGTCTCAACAGCTTTGTCATCTC +
Preference number: 1 (lower is better)
Translates to: PPSLSGEVEWPQLKG*LKGARCWSQQLCHL
Trigger: GAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCCTTCAGTTGGGGCCACTCCACCTCCCCAGATAAGGAAGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 90 bp TGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGAGTGGCAATaGAATGCTGAACAGTCACTGTCTCTTAGTGCACTCATCAGTGGG +
Preference number: 1 (lower is better)
Translates to: WTPHGNQQEGAWEWQ*NAEQSLSLSALISG
Trigger: CCCACTGATGAGTGCACTAAGAGACAGTGACTGTTCAGCATTTCATTGCCACTCCCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR GCA 90 bp TCATGCATCACCGGCCTTTCCAGCCTCGGGGCCCCGTGTTGCCTCTaGTCACACACTTTGCAGATATCAACACGTTTATGGTGCAACAGA +
Preference number: 1 (lower is better)
Translates to: SCITGLSSLGAPCCL*SHTLQISTRLWCNR
Trigger: TCTGTTGCACCATAAACGTGTTGATATCTGCAAAGTGTGTGAGCAGAGGCAACACGGGGCCCCGAGGCTGGAAAGGCCGGTGATGCATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 90 bp ATCTGTTCATGCATCACCGGCCTTTCCAGCCTCGGGGCCCCGTGTTaGCTCTGCTCACACACTTTGCAGATATCAACACGTTTATGGTGC +
Preference number: 1 (lower is better)
Translates to: ICSCITGLSSLGAPC*LCSHTLQISTRLWC
Trigger: GCACCATAAACGTGTTGATATCTGCAAAGTGTGTGAGCAGAGGCAACACGGGGCCCCGAGGCTGGAAAGGCCGGTGATGCATGAACAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 90 bp GATGTGACCTGGGTACCTGAGGAGGTAACCCACAGAAGAAGGCTATaGCCTGATGGAGAACAGATCTCCAGAATCCCACGATGGGCAGGT +
Preference number: 1 (lower is better)
Translates to: DVTWVPEEVTHRRRL*PDGEQISRIPRWAG
Trigger: ACCTGCCCATCGTGGGATTCTGGAGATCTGTTCTCCATCAGGGCATAGCCTTCTTCTGTGGGTTACCTCCTCAGGTACCCAGGTCACATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 90 bp GGATTCGGAGGCTGCGCCGGGGGTAGGAAGGGATCTGTGAAACACTaGGCTCCGGATGGATGCATTTTACTGTTGTTTCCTTTGGGAAAC +
Preference number: 1 (lower is better)
Translates to: GFGGCAGGRKGSVKH*APDGCILLLFPLGN
Trigger: GTTTCCCAAAGGAAACAACAGTAAAATGCATCCATCCGGAGCTCAGTGTTTCACAGATCCCTTCCTACCCCCGGCGCAGCCTCCGAATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 90 bp GTGCAACAGATCATCAAGTTCACCAAGGATCTGCCGCTCTTCCGGTaGGTAGCACATGGCCTTTCAGGAAGCAAGTGCTCGCTCGGTAAG +
Preference number: 1 (lower is better)
Translates to: VQQIIKFTKDLPLFR*VAHGLSGSKCSLGK
Trigger: CTTACCGAGCGAGCACTTGCTTCCTGAAAGGCCATGTGCTACTCACCGGAAGAGCGGCAGATCCTTGGTGAACTTGATGATCTGTTGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 90 bp CTCGCCATGTGGGCCCCATGTTTGACCAGTTTGTGCAGTTCAAGGTaGGAACTTAACCAGGATGTGACCTGGGTACCTGAGGAGGTAACC +
Preference number: 1 (lower is better)
Translates to: LAMWAPCLTSLCSSR*ELNQDVTWVPEEVT
Trigger: GGTTACCTCCTCAGGTACCCAGGTCACATCCTGGTTAAGTTCTCACCTTGAACTGCACAAACTGGTCAAACATGGGGCCCACATGGCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 90 bp TCCAGTACGAGTTTTTGGAGTCGATCCTCCACTTCCATAAAAACCTaGAAGGACTGCATCTCCAGGAGCCTGAGTATGTGCTCATGGCTG +
Preference number: 1 (lower is better)
Translates to: SSTSFWSRSSTSIKT*KDCISRSLSMCSWL
Trigger: CAGCCATGAGCACATACTCAGGCTCCTGGAGATGCAGTCCTTTCAGGTTTTTATGGAAGTGGAGGATCGACTCCAAAAACTCGTACTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 90 bp CCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCTCTaGTCATTCCCTAATGAATCCGTTTGCTACGAGGGAGATGCTTTA +
Preference number: 1 (lower is better)
Translates to: PSSTVQAQTSMPPSL*SFPNESVCYEGDAL
Trigger: TAAAGCATCTCCCTCGTAGCAAACGGATTCATTAGGGAATGAGCAGAGCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR GCA 90 bp ACTACGTTCTGTCTTCAAACAGAGAATTTCTTCTGTGGGCCTCTTTaGTACAAGATGGAGGACGCAGTCCATGGTGAGATGGTAGAACGG +
Preference number: 1 (lower is better)
Translates to: TTFCLQTENFFCGPL*YKMEDAVHGEMVER
Trigger: CCGTTCTACCATCTCACCATGGACTGCGTCCTCCATCTTGTAGCAAAGAGGCCCACAGAAGAAATTCTCTGTTTGAAGACAGAACGTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 90 bp TGTTGCCTCTGCTCACACACTTTGCAGATATCAACACGTTTATGGTaGAACAGATCATCAAGTTCACCAAGGATCTGCCGCTCTTCCGGT +
Preference number: 1 (lower is better)
Translates to: CCLCSHTLQISTRLW*NRSSSSPRICRSSG
Trigger: ACCGGAAGAGCGGCAGATCCTTGGTGAACTTGATGATCTGTTGCACCATAAACGTGTTGATATCTGCAAAGTGTGTGAGCAGAGGCAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CCA 90 bp TCCTGTTGTTGTTTTCAGTCAGTAGAGATGCAAAGTCGTAGCTCATaGCCTGGGTGTGACAGCTTTCCTGAGACTGGTGACATTCCTTAC +
Preference number: 1 (lower is better)
Translates to: SCCCFQSVEMQSRSS*PGCDSFPETGDIPY
Trigger: GTAAGGAATGTCACCAGTCTCAGGAAAGCTGTCACACCCAGGCCATGAGCTACGACTTTGCATCTCTACTGACTGAAAACAACAACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR TCA 90 bp GAAAGTGTGCAGGGATTCCCCTGCCATCAGGAAACATTAATTCAATaGAGTCCCAAGGAAGCCTCAGAAACTCTTTCTTCCTTCCTCCTT +
Preference number: 1 (lower is better)
Translates to: ESVQGFPCHQETLIQ*SPKEASETLSSFLL
Trigger: AAGGAGGAAGGAAGAAAGAGTTTCTGAGGCTTCCTTGGGACTTCATTGAATTAATGTTTCCTGATGGCAGGGGAATCCCTGCACACTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 90 bp TATTCTCCACCCTCCCCTTCTTTCCCATGGTGCATTGCTTTCTGCTaGAGTGTATCACAGATGAATATGAGATCGACAGAAAGTGTGCAG +
Preference number: 1 (lower is better)
Translates to: YSPPSPSFPWCIAFC*SVSQMNMRSTESVQ
Trigger: CTGCACACTTTCTGTCGATCTCATATTCATCTGTGATACACTTCAGCAGAAAGCAATGCACCATGGGAAAGAAGGGGAGGGTGGAGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 90 bp CTTCCCACTTTATTCTCCACCCTCCCCTTCTTTCCCATGGTGCATTaGTTTCTGCTGAAGTGTATCACAGATGAATATGAGATCGACAGA +
Preference number: 1 (lower is better)
Translates to: LPTLFSTLPFFPMVH*FLLKCITDEYEIDR
Trigger: TCTGTCGATCTCATATTCATCTGTGATACACTTCAGCAGAAAGCAATGCACCATGGGAAAGAAGGGGAGGGTGGAGAATAAAGTGGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 90 bp TCTAGAACTGGATCTAGAAGGCCTCACCTTCAGATTCTATACAGTTaGCGTTTTGGCCAAGAACTTCTTTTACACTTGACCTCAAAGCCC +
Preference number: 1 (lower is better)
Translates to: SRTGSRRPHLQILYS*RFGQELLLHLTSKP
Trigger: GGGCTTTGAGGTCAAGTGTAAAAGAAGTTCTTGGCCAAAACGTCAACTGTATAGAATCTGAAGGTGAGGCCTTCTAGATCCAGTTCTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR GCA 90 bp TGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGAGCTGCTGCAGAGGCTaGTCCCAGGACAACCTCAGC +
Preference number: 2 (lower is better)
Translates to: WKGYSAGPHTGTSRKELGSCCRG*SQDNLS
Trigger: GCTGAGGTTGTCCTGGGAGCAGCCTCTGCAGCAGCT...CCCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp CTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGACAGGACTCCCAGCTGCCTTACTCCAAGGGCTAGGGTaGCAGGCAGGGGACGCATCT +
Preference number: 2 (lower is better)
Translates to: LRSGPGDRNLRTGLPAALLQGLG*QAGDAS
Trigger: AGATGCGTCCCCTGCCTGTCACCCTAGCCCTTGGAG...TAAGGCAGCTGGGAGTCCTGTCCTGAGGTTCCTATCCCCTGGACCACTCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp GCCGCTGCTCGGGGAGATTTGCAGTTGAGGCCCAGGCTTGCATCCTTTCCCCAGAAAGGTTCCAGCTGCTaGAGAGGCTGCTCCCAGGAC +
Preference number: 2 (lower is better)
Translates to: AAARGDLQLRPRLASFPQKGSSC*RGCSQD
Trigger: GTCCTGGGAGCAGCCTCTGCAGCAGCTGGAACCTTT...CTGGGGAAAGGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCGAGCAGCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp TGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGTTCTGTATGCAAAGCTaGTGGGCCTGCTGGCTGACC +
Preference number: 2 (lower is better)
Translates to: WKGYSAGPHTGTSRKELGFCMQS*WACWLT
Trigger: GGTCAGCCAGCAGGCCCATCAGCTTTGCATACAGAA...CCCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp AGACCCCCAGGGATACACTGGCCTGGAAAGGGTACAGCGCTGGACCCCACACGGCTCCAGAGCATCTGCTaGTCAGACTTAGCCTCTCTG +
Preference number: 2 (lower is better)
Translates to: RPPGIHWPGKGTALDPTRLQSIC*SDLASL
Trigger: CAGAGAGGCTAAGTCTGAGCAGCAGATGCTCTGGAG...CCGTGTGGGGTCCAGCGCTGTACCCTTTCCAGGCCAGTGTATCCCTGGGGGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp AAGGGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGCCCCCACTCTGCCCATaGGACCTAGGAGTCATCCGG +
Preference number: 2 (lower is better)
Translates to: KGGGQPQGQSCSPETQGMPPLCP*DLGVIR
Trigger: CCGGATGACTCCTAGGTCCCATGGGCAGAGTGGGGG...CATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp GTCATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGCTCGGGGCTAGGAGGTaGCTAGAGTTCCTTCTGGGA +
Preference number: 2 (lower is better)
Translates to: VIRQGRLWRGTKLVSGPRLGARR*LEFLLG
Trigger: TCCCAGAAGGAACTCTAGTCACCTCCTAGCCCCGAG...CCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGATGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp GGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAGCACAAGCCGATGGGTaGTGCTCTGCAGGAAGTGAG +
Preference number: 2 (lower is better)
Translates to: GGGQPQGQSCSPETQGMGAQADG*CSAGSE
Trigger: CTCACTTCCTGCAGAGCATCACCCATCGGCTTGTGC...TCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp TGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGTGTTTCGCCAGTGATTaGGGAAGGCTCCAAGGGCTA +
Preference number: 2 (lower is better)
Translates to: WKGYSAGPHTGTSRKELGCFASD*GRLQGL
Trigger: TAGCCCTTGGAGCCTTCCTCAATCACTGGCGAAACA...CCCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp GTCATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGAAAGGTTCCAGCTGCTaGAGAGGCTGCTCCCAGGAC +
Preference number: 2 (lower is better)
Translates to: VIRQGRLWRGTKLVSGPRKGSSC*RGCSQD
Trigger: GTCCTGGGAGCAGCCTCTGCAGCAGCTGGAACCTTT...CCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGATGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp CTGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGTCCCGAGGGAAGGAGTaGAAGACTGAGGAATGGAGA +
Preference number: 2 (lower is better)
Translates to: LERVQRWTPHGNQQEGAWSRGKE*KTEEWR
Trigger: TCTCCATTCCTCAGTCTTCCACTCCTTCCCTCGGGA...CCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp GGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAAAGCTCGGGGCTAGGAGGTaGCTAGAGTTCCTTCTGGGA +
Preference number: 2 (lower is better)
Translates to: GGQPQGQSCSPETQGMGKLGARR*LEFLLG
Trigger: TCCCAGAAGGAACTCTAGTCACCTCCTAGCCCCGAG...CTTTCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp CTCAGTGGTATGAGGTGTGGAGCAATGGCCAGGAGGCTCCTCAGTCTACCATCTGTTGAGGCCCAGGCTTaGATCCTTTCCCCAGACCCC +
Preference number: 2 (lower is better)
Translates to: LSGMRCGAMARRLLSLPSVEAQA*ILSPDP
Trigger: GGGGTCTGGGGAAAGGATGCAAGCCTGGGCCTCAAC...AGATGGTAGACTGAGGAGCCTCCTGGCCATTGCTCCACACCTCATACCACTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CCA 90 bp GGGATGGCTGAAAGGTGCTCGCTGCTGGTCTCAACAGCTTTGTCATCTCTCTTGCCCCCACTCTGCCCATaGGACCTAGGAGTCATCCGG +
Preference number: 2 (lower is better)
Translates to: GMAERCSLLVSTALSSLLPPLCP*DLGVIR
Trigger: CCGGATGACTCCTAGGTCCCATGGGCAGAGTGGGGG...CAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CCA 90 bp GGGATGGCTGAAAGGTGCTCGCTGCTGGTCTCAACAGCTTTGTCATCTCTCTTGTGGTCCAGATCCTCCTaGGGGCCCACACTCGCCATG +
Preference number: 2 (lower is better)
Translates to: GMAERCSLLVSTALSSLLWSRSS*GPTLAM
Trigger: CATGGCGAGTGTGGGCCCCCAGGAGGATCTGGACCA...CAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CAA 90 bp TTGCGGCGAGCCAGACAGGCACAGCGGCGGGCAGAGAAAGCATCTTaGCAACTGAATCAGCAGCAGAAAGAACTGGTCCAGATCCTCCTG +
Preference number: 2 (lower is better)
Translates to: LRRARQAQRRAEKAS*QLNQQQKELVQILL
Trigger: CAGGAGGATCTGGACCAGTTCTTTCTGCTGCTGATTCAGTTGCAAAGATGCTTTCTCTGCCCGCCGCTGTGCCTGTCTGGCTCGCCGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR TCA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGTTCTGTATGCAAAGCTaGTGGGCCTGCTGGCTGACC +
Preference number: 2 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRFCMQS*WACWLT
Trigger: GGTCAGCCAGCAGGCCCATCAGCTTTGCATACAGAA...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp TTCTTCCTTCCTCCTTCCTTATCTGGGGAGGTGGAGTGGCCCCAACTGAAGGGAGCATCTCCAGGAGCCTaGGTATGTGCTCATGGCTGC +
Preference number: 2 (lower is better)
Translates to: FFLPPSLSGEVEWPQLKGASPGA*VCAHGC
Trigger: GCAGCCATGAGCACATACTCAGGCTCCTGGAGATGC...TCCCTTCAGTTGGGGCCACTCCACCTCCCCAGATAAGGAAGGAGGAAGGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CCA 90 bp GTCATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGGTGGGCCCATTCTTTaGTCTTTCTGTGGCCAGAGA +
Preference number: 2 (lower is better)
Translates to: VIRQGRLWRGTKLVSGPRGGPIL*SFCGQR
Trigger: TCTCTGGCCACAGAAAGACCAAAGAATGGGCCCACC...CCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp AAGGGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGAGGGATACACTGGCCTaGAAAGGGTACAGCGCTGGA +
Preference number: 2 (lower is better)
Translates to: KGGGQPQGQSCSPETQGMRDTLA*KGYSAG
Trigger: TCCAGCGCTGTACCCTTTCCAGGCCAGTGTATCCCT...CATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGTTCCCAGGGTCAGAGTaGCTGTGTAGTCATCTCCCC +
Preference number: 2 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRFPGSE*LCSHLP
Trigger: GGGGAGATGACTACACAGCCACTCTGACCCTGGGAA...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp TTCTTCCTTCCTCCTTCCTTATCTGGGGAGGTGGAGTGGCCCCAACTGAAGGGATGTGACCTGGGTACCTaGGGAGGTAACCCACAGAAG +
Preference number: 2 (lower is better)
Translates to: FFLPPSLSGEVEWPQLKGCDLGT*GGNPQK
Trigger: CTTCTGTGGGTTACCTCCTCAGGTACCCAGGTCACA...TCCCTTCAGTTGGGGCCACTCCACCTCCCCAGATAAGGAAGGAGGAAGGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR TCA 90 bp CTCCCAGGACAACCTCAGCCCACAGTGATGCTGAAGCCGCAATGGAATCTGTTTTGCATGGGCCCCACCTaGCCCAACATTCAACGTAGC +
Preference number: 2 (lower is better)
Translates to: LPGQPQPTVMLKPQWNLFCMGPT*PNIQRS
Trigger: GCTACGTTGAATGTTGGGTCAGGTGGGGCCCATGCA...AAACAGATTCCATTGCGGCTTCAGCATCACTGTGGGCTGAGGTTGTCCTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGGACAGGACTCCCAGCTaGCTTATTTCCCTGGTAACC +
Preference number: 2 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRDRTPS*LISLVT
Trigger: GGTTACCAGGGAAATAAGGCAGCTGGGAGTCCTGTC...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp CAGCAGCAGAAAGAACTGGTCCAGATCCTCCTGGGGGCCCACACTCGCCATGTGCCAGATTGCTCAGACTaGTGTGTTGTCTCCCTTTTC +
Preference number: 2 (lower is better)
Translates to: QQQKELVQILLGAHTRHVPDCSD*CVVSLF
Trigger: GAAAAGGGAGACAACACAGCAGTCTGAGCAATCTGG...CACATGGCGAGTGTGGGCCCCCAGGAGGATCTGGACCAGTTCTTTCTGCTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CCA 90 bp GAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTAACTCCCCCACTCTGCCCATaGGACCTAGGAGTCATCCGG +
Preference number: 2 (lower is better)
Translates to: EIIVGLMAVLGTSTRYLTPPLCP*DLGVIR
Trigger: CCGGATGACTCCTAGGTCCCATGGGCAGAGTGGGGG...AGTTAGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp GGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGACCTTCTGGGAATGGGTaGGCCCATTCTTTGGTCTTT +
Preference number: 2 (lower is better)
Translates to: GGGQPQGQSCSPETQGMGPSGNG*AHSLVF
Trigger: AAAGACCAAAGAATGGGCCCACCCATTCCCAGAAGG...TCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp CTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGACAGGACTCCCAGCTGCCTTAAGTTCCTTCTGGGAATaGGTGGGCCCATTCTTTGGT +
Preference number: 2 (lower is better)
Translates to: LRSGPGDRNLRTGLPAALSSFWE*VGPFFG
Trigger: ACCAAAGAATGGGCCCACCCATTCCCAGAAGGAACT...TAAGGCAGCTGGGAGTCCTGTCCTGAGGTTCCTATCCCCTGGACCACTCCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp GAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTAACTCTCATCAGTGGGGCGTaGAGTGGGTGGGGGACAGAG +
Preference number: 2 (lower is better)
Translates to: EIIVGLMAVLGTSTRYLTLISGA*SGWGTE
Trigger: CTCTGTCCCCCACCCACTCCACGCCCCACTGATGAG...AGTTAGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp AAGGGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGAAGGAGTGGAAGACTaGGGAATGGAGAAACCAGGA +
Preference number: 2 (lower is better)
Translates to: KGGGQPQGQSCSPETQGMEGVED*GMEKPG
Trigger: TCCTGGTTTCTCCATTCCTCAGTCTTCCACTCCTTC...CATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp CTACCATCTCTCACAGCAGGGTTCCAGTACGAGTTTTTGGAGTCGATCCTCCACCTCGGGGCTAGGAGGTaGCTAGAGTTCCTTCTGGGA +
Preference number: 2 (lower is better)
Translates to: LPSLTAGFQYEFLESILHLGARR*LEFLLG
Trigger: TCCCAGAAGGAACTCTAGTCACCTCCTAGCCCCGAG...GTGGAGGATCGACTCCAAAAACTCGTACTGGAACCCTGCTGTGAGAGATGGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR GCA 90 bp GTAGAGATGCAAAGTCGTAGCTCATGGCCTGGGTGTGACAGCTTTCCTGAGACTAAAGGTTCCAGCTGCTaGAGAGGCTGCTCCCAGGAC +
Preference number: 2 (lower is better)
Translates to: VEMQSRSSWPGCDSFPETKGSSC*RGCSQD
Trigger: GTCCTGGGAGCAGCCTCTGCAGCAGCTGGAACCTTT...AGTCTCAGGAAAGCTGTCACACCCAGGCCATGAGCTACGACTTTGCATCTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp CACGGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCGGTGGGCCCATTCTTTaGTCTTTCTGTGGCCAGAGA +
Preference number: 2 (lower is better)
Translates to: HGQSLVQQCRLRHLCHLRGGPIL*SFCGQR
Trigger: TCTCTGGCCACAGAAAGACCAAAGAATGGGCCCACC...GCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp GATAGACCTAAGTCTAAAGTGCCCTTGTTTTCTACCCGACACAGGTCCCTAACCCTCATCAGTGGGGCGTaGAGTGGGTGGGGGACAGAG +
Preference number: 2 (lower is better)
Translates to: DRPKSKVPLFSTRHRSLTLISGA*SGWGTE
Trigger: CTCTGTCCCCCACCCACTCCACGCCCCACTGATGAG...GGTTAGGGACCTGTGTCGGGTAGAAAACAAGGGCACTTTAGACTTAGGTCTATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CCA 90 bp GCTTTCCTGAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTCATCAGTGGGGCGTaGAGTGGGTGGGGGACAGAG +
Preference number: 2 (lower is better)
Translates to: AFLRLVTFLTSHLSDFSKLISGA*SGWGTE
Trigger: CTCTGTCCCCCACCCACTCCACGCCCCACTGATGAG...TTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTCAGGAAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp TGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGCCTGAACCTGTTCATTaGCCTTGTGGTAATAACTTG +
Preference number: 2 (lower is better)
Translates to: WKGYSAGPHTGTSRKELGPEPVH*PCGNNL
Trigger: CAAGTTATTACCACAAGGCCAATGAACAGGTTCAGG...CCCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR CAA 90 bp AGACCTTCCCTCGGACCACCCCATCCATCGCACACAGTATCCAGATaGCTCAGACTGCTGTGTTGTCTCCCTTTTCCAAGTTGTTGGCTC +
Preference number: 2 (lower is better)
Translates to: RPSLGPPHPSHTVSR*LRLLCCLPFPSCWL
Trigger: GAGCCAACAACTTGGAAAAGGGAGACAACACAGCAGTCTGAGCAATCTGGATACTGTGTGCGATGGATGGGGTGGTCCGAGGGAAGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR CAA 90 bp TATCTGTTCATGCATCACCGGCCTTTCCAGCCTCGGGGCCCCGTGTaGCCTCTGCTCACACACTTTGCAGATATCAACACGTTTATGGTG +
Preference number: 2 (lower is better)
Translates to: YLFMHHRPFQPRGPV*PLLTHFADINTFMV
Trigger: CACCATAAACGTGTTGATATCTGCAAAGTGTGTGAGCAGAGGCAACACGGGGCCCCGAGGCTGGAAAGGCCGGTGATGCATGAACAGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR GCA 90 bp GCCGCTGCTCGGGGAGATTTGCAGTTGAGGCCCAGGCTTGCATCCTTTCCCCAGCCATGCAGATTTCTCTaGTTTGAAGAAGGAGTAGTA +
Preference number: 2 (lower is better)
Translates to: AAARGDLQLRPRLASFPQPCRFL*FEEGVV
Trigger: TACTACTCCTTCTTCAAAGCAGAGAAATCTGCATGG...CTGGGGAAAGGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCGAGCAGCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp AAGGGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGCCAAAGGTTTCTGTATaGAAAGCTGATGGGCCTGCT +
Preference number: 2 (lower is better)
Translates to: KGGGQPQGQSCSPETQGMPKVSV*KADGPA
Trigger: AGCAGGCCCATCAGCTTTGCATACAGAAACCTTTGG...CATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp TTCTTCCTTCCTCCTTCCTTATCTGGGGAGGTGGAGTGGCCCCAACTGAAGGGAAGTTCCTTCTGGGAATaGGTGGGCCCATTCTTTGGT +
Preference number: 2 (lower is better)
Translates to: FFLPPSLSGEVEWPQLKGSSFWE*VGPFFG
Trigger: ACCAAAGAATGGGCCCACCCATTCCCAGAAGGAACT...TCCCTTCAGTTGGGGCCACTCCACCTCCCCAGATAAGGAAGGAGGAAGGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CCA 90 bp GAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTAACTCAGAGAGAAGGGAGGTaGGCAACCACAGGGCCAAAG +
Preference number: 2 (lower is better)
Translates to: EIIVGLMAVLGTSTRYLTQREGR*ATTGPK
Trigger: CTTTGGCCCTGTGGTTGCCCACCTCCCTTCTCTCTG...AGTTAGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp TCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCGAGGGAAGGAGCAGCCAGAGTCAAGATaGCCCCCTCTTCTCCTGGCC +
Preference number: 2 (lower is better)
Translates to: SFCGQRFNSLILPSRGKEQPESR*PPLLLA
Trigger: GGCCAGGAGAAGAGGGGGCCATCTTGACTCTGGCTG...CTCCTTCCCTCGGGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR CAA 90 bp ACTGAAGGGATGGCTGAAAGGTGCTCGCTGCTGGTCTCAACAGCTTaGTCATCTCTCTTGCCTGACACAGTGATACTGTCAGCAGAAGCC +
Preference number: 2 (lower is better)
Translates to: TEGMAERCSLLVSTA*SSLLPDTVILSAEA
Trigger: GGCTTCTGCTGACAGTATCACTGTGTCAGGCAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCCTTCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR TCA 90 bp GCCGCTGCTCGGGGAGATTTGCAGTTGAGGCCCAGGCTTGCATCCTTTCCCCAGCAGATTTCTCTGCTTTaGAGAAGGAGTAGTAATATC +
Preference number: 2 (lower is better)
Translates to: AAARGDLQLRPRLASFPQQISLL*RRSSNI
Trigger: GATATTACTACTCCTTCTTCAAAGCAGAGAAATCTG...CTGGGGAAAGGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCGAGCAGCGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp TCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCGAGGGAAGGAGAAAGGTTCCAGCTGCTaGAGAGGCTGCTCCCAGGAC +
Preference number: 2 (lower is better)
Translates to: SFCGQRFNSLILPSRGKEKGSSC*RGCSQD
Trigger: GTCCTGGGAGCAGCCTCTGCAGCAGCTGGAACCTTT...CTCCTTCCCTCGGGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp CTCAGACATCTATGCCACCTTCGCTCTGCTCATTCCCTAATGAATCCGTTTGCTCTCAAAGGTTCCAGCTaGTGCAGAGGCTGCTCCCAG +
Preference number: 2 (lower is better)
Translates to: LRHLCHLRSAHSLMNPFALKGSS*CRGCSQ
Trigger: CTGGGAGCAGCCTCTGCAGCAGCTGGAACCTTTGAG...AGCAAACGGATTCATTAGGGAATGAGCAGAGCGAAGGTGGCATAGATGTCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR GCA 90 bp TCATGGCCTGGGTGTGACAGCTTTCCTGAGACTGGTGACATTCCTTACCTCTCAGACAGGACTCCCAGCTaGCTTATTTCCCTGGTAACC +
Preference number: 2 (lower is better)
Translates to: SWPGCDSFPETGDIPYLSDRTPS*LISLVT
Trigger: GGTTACCAGGGAAATAAGGCAGCTGGGAGTCCTGTC...TGAGAGGTAAGGAATGTCACCAGTCTCAGGAAAGCTGTCACACCCAGGCCATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp CCCATTCTTTGGTCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCCCCCACTCTGCCCATaGGACCTAGGAGTCATCCGG +
Preference number: 2 (lower is better)
Translates to: PILWSFCGQRFNSLILPSPPLCP*DLGVIR
Trigger: CCGGATGACTCCTAGGTCCCATGGGCAGAGTGGGGG...GGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGACCAAAGAATGGG
52% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp TCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCGAGGGAAGGAGCAGAGAGAAGGGAGGTaGGCAACCACAGGGCCAAAG +
Preference number: 2 (lower is better)
Translates to: SFCGQRFNSLILPSRGKEQREGR*ATTGPK
Trigger: CTTTGGCCCTGTGGTTGCCCACCTCCCTTCTCTCTG...CTCCTTCCCTCGGGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGGATAGAGGCCCTTCTTaGGTATGTCTGAGATTTTCC +
Preference number: 2 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRDRGPS*VCLRFS
Trigger: GGAAAATCTCAGACATACCCAAGAAGGGCCTCTATC...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp ACAGAGAATTTCTTCTGTGGGCCTCTTTGCTACAAGATGGAGGACGCAGTCCATCGGAAACACAGGGGATaGGAAAGATGGAAGCCTCGG +
Preference number: 2 (lower is better)
Translates to: TENFFCGPLCYKMEDAVHRKHRG*ERWKPR
Trigger: CCGAGGCTTCCATCTTTCCCATCCCCTGTGTTTCCG...ATGGACTGCGTCCTCCATCTTGTAGCAAAGAGGCCCACAGAAGAAATTCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR TCA 90 bp CTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGACAGGACTCCCAGCTGCCTTACAGATTTCTCTGCTTTaGAGAAGGAGTAGTAATATC +
Preference number: 2 (lower is better)
Translates to: LRSGPGDRNLRTGLPAALQISLL*RRSSNI
Trigger: GATATTACTACTCCTTCTTCAAAGCAGAGAAATCTG...TAAGGCAGCTGGGAGTCCTGTCCTGAGGTTCCTATCCCCTGGACCACTCCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp CACGGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCCTTCTTGGGTATGTCTaGGATTTTCCAAGATGTAGC +
Preference number: 2 (lower is better)
Translates to: HGQSLVQQCRLRHLCHLRLLGYV*DFPRCS
Trigger: GCTACATCTTGGAAAATCTCAGACATACCCAAGAAG...GCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp GAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTAACTCCTTCTGGGAATGGGTaGGCCCATTCTTTGGTCTTT +
Preference number: 2 (lower is better)
Translates to: EIIVGLMAVLGTSTRYLTPSGNG*AHSLVF
Trigger: AAAGACCAAAGAATGGGCCCACCCATTCCCAGAAGG...AGTTAGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp GGTATGTCTGAGATTTTCCAAGATGTAGCTCCAGAGCATCTGCTGCTCAGACTTCGGAAACACAGGGGATaGGAAAGATGGAAGCCTCGG +
Preference number: 2 (lower is better)
Translates to: GMSEIFQDVAPEHLLLRLRKHRG*ERWKPR
Trigger: CCGAGGCTTCCATCTTTCCCATCCCCTGTGTTTCCG...AAGTCTGAGCAGCAGATGCTCTGGAGCTACATCTTGGAAAATCTCAGACATACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp GGTATGTCTGAGATTTTCCAAGATGTAGCTCCAGAGCATCTGCTGCTCAGACTTAGGGATACACTGGCCTaGAAAGGGTACAGCGCTGGA +
Preference number: 2 (lower is better)
Translates to: GMSEIFQDVAPEHLLLRLRDTLA*KGYSAG
Trigger: TCCAGCGCTGTACCCTTTCCAGGCCAGTGTATCCCT...AAGTCTGAGCAGCAGATGCTCTGGAGCTACATCTTGGAAAATCTCAGACATACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp GAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTAAAGTCAGGGATACACTGGCCTaGAAAGGGTACAGCGCTGGA +
Preference number: 2 (lower is better)
Translates to: ETGDIPYLSPLRLFQTKVRDTLA*KGYSAG
Trigger: TCCAGCGCTGTACCCTTTCCAGGCCAGTGTATCCCT...GACTTTAGTTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR TCA 90 bp GGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAAAGCAGATTTCTCTGCTTTaGAGAAGGAGTAGTAATATC +
Preference number: 2 (lower is better)
Translates to: GGQPQGQSCSPETQGMGKQISLL*RRSSNI
Trigger: GATATTACTACTCCTTCTTCAAAGCAGAGAAATCTG...CTTTCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp AAGCCAGACACATCCCGTAGTCCCTCTCCTTTACTCCAGAGCCATACAGCTTATGGAAGTGAGCAACCATaGTCACTGATTCCCCAATCA +
Preference number: 2 (lower is better)
Translates to: KPDTSRSPSPLLQSHTAYGSEQP*SLIPQS
Trigger: TGATTGGGGAATCAGTGATCATGGTTGCTCACTTCC...ATAAGCTGTATGGCTCTGGAGTAAAGGAGAGGGACTACGGGATGTGTCTGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp CTTCTCAAGGGAGCGGCTGTGGAAATATTGCATATCTCACTCAACACTACGTTCCTCCAGAGCATCTGCTaGTCAGACTTAGCCTCTCTG +
Preference number: 2 (lower is better)
Translates to: LLKGAAVEILHISLNTTFLQSIC*SDLASL
Trigger: CAGAGAGGCTAAGTCTGAGCAGCAGATGCTCTGGAG...GAACGTAGTGTTGAGTGAGATATGCAATATTTCCACAGCCGCTCCCTTGAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CCA 90 bp GGTATGTCTGAGATTTTCCAAGATGTAGCTCCAGAGCATCTGCTGCTCAGACTTGGTGGGCCCATTCTTTaGTCTTTCTGTGGCCAGAGA +
Preference number: 2 (lower is better)
Translates to: GMSEIFQDVAPEHLLLRLGGPIL*SFCGQR
Trigger: TCTCTGGCCACAGAAAGACCAAAGAATGGGCCCACC...AAGTCTGAGCAGCAGATGCTCTGGAGCTACATCTTGGAAAATCTCAGACATACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp GACCTCAAAGCCCTGGGTTCAGGAAAAACTAGGCACAATGAAGGAACAGTGTTGAGTTCCTTCTGGGAATaGGTGGGCCCATTCTTTGGT +
Preference number: 2 (lower is better)
Translates to: DLKALGSGKTRHNEGTVLSSFWE*VGPFFG
Trigger: ACCAAAGAATGGGCCCACCCATTCCCAGAAGGAACT...CAACACTGTTCCTTCATTGTGCCTAGTTTTTCCTGAACCCAGGGCTTTGAGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR TCA 90 bp CACGGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCCAGATTTCTCTGCTTTaGAGAAGGAGTAGTAATATC +
Preference number: 2 (lower is better)
Translates to: HGQSLVQQCRLRHLCHLRQISLL*RRSSNI
Trigger: GATATTACTACTCCTTCTTCAAAGCAGAGAAATCTG...GCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCCGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR TCA 90 bp GACCTCAAAGCCCTGGGTTCAGGAAAAACTAGGCACAATGAAGGAACAGTGTTGATGCTCTGCAGGAAGTaGGCAACCATGATCACTGAT +
Preference number: 2 (lower is better)
Translates to: DLKALGSGKTRHNEGTVLMLCRK*ATMITD
Trigger: ATCAGTGATCATGGTTGCTCACTTCCTGCAGAGCAT...CAACACTGTTCCTTCATTGTGCCTAGTTTTTCCTGAACCCAGGGCTTTGAGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp CTCCCAGGACAACCTCAGCCCACAGTGATGCTGAAGCCGCAATGGAATCTGTTTCCATGCAGATTTCTCTaGTTTGAAGAAGGAGTAGTA +
Preference number: 2 (lower is better)
Translates to: LPGQPQPTVMLKPQWNLFPCRFL*FEEGVV
Trigger: TACTACTCCTTCTTCAAAGCAGAGAAATCTGCATGG...AAACAGATTCCATTGCGGCTTCAGCATCACTGTGGGCTGAGGTTGTCCTGGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp GCTTTCCTGAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAAATGCCACCTTCGCTCTaGTCATTCCCTAATGAATCC +
Preference number: 2 (lower is better)
Translates to: AFLRLVTFLTSHLSDFSKMPPSL*SFPNES
Trigger: GGATTCATTAGGGAATGAGCAGAGCGAAGGTGGCAT...TTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTCAGGAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp GAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTAAAGTCCCTTCTGGGAATGGGTaGGCCCATTCTTTGGTCTTT +
Preference number: 2 (lower is better)
Translates to: ETGDIPYLSPLRLFQTKVPSGNG*AHSLVF
Trigger: AAAGACCAAAGAATGGGCCCACCCATTCCCAGAAGG...GACTTTAGTTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp GGTGGGCCCATTCTTTGGTCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCTGGGAATGGGTaGGCCCATTCTTTGGTCTTT +
Preference number: 2 (lower is better)
Translates to: GGPILWSFCGQRFNSLILPSGNG*AHSLVF
Trigger: AAAGACCAAAGAATGGGCCCACCCATTCCCAGAAGG...GAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGACCAAAGAATGGGCCCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp CTACGTTCTGTCTTCAAACAGAGAATTTCTTCTGTGGGCCTCTTTGCTACAAGACTGAGTATGTGCTCATaGCTGCCACGGCCCTCTTCT +
Preference number: 2 (lower is better)
Translates to: LRSVFKQRISSVGLFATRLSMCS*LPRPSS
Trigger: AGAAGAGGGCCGTGGCAGCCATGAGCACATACTCAG...TCTTGTAGCAAAGAGGCCCACAGAAGAAATTCTCTGTTTGAAGACAGAACGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR GCA 90 bp CAGCTACAAGAGGAGATGGCGCTGATTCTGAACAACCACATTATGGAACAACAGCCAAAGGTTTCTGTATaGAAAGCTGATGGGCCTGCT +
Preference number: 2 (lower is better)
Translates to: QLQEEMALILNNHIMEQQPKVSV*KADGPA
Trigger: AGCAGGCCCATCAGCTTTGCATACAGAAACCTTTGG...CTGTTGTTCCATAATGTGGTTGTTCAGAATCAGCGCCATCTCCTCTTGTAGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR GCA 90 bp GAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTAAAGTCATGCCACCTTCGCTCTaGTCATTCCCTAATGAATCC +
Preference number: 2 (lower is better)
Translates to: ETGDIPYLSPLRLFQTKVMPPSL*SFPNES
Trigger: GGATTCATTAGGGAATGAGCAGAGCGAAGGTGGCAT...GACTTTAGTTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp AAAACTAGGCACAATGAAGGAACAGTGTTGATAGAGGCCCTTCTTGGGTATGTCAGTTCCTTCTGGGAATaGGTGGGCCCATTCTTTGGT +
Preference number: 2 (lower is better)
Translates to: KTRHNEGTVLIEALLGYVSSFWE*VGPFFG
Trigger: ACCAAAGAATGGGCCCACCCATTCCCAGAAGGAACT...GACATACCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATTGTGCCTAGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CCA 90 bp CACGGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCATACAGTTGACGTTTTaGCCAAGAACTTCTTTTACA +
Preference number: 2 (lower is better)
Translates to: HGQSLVQQCRLRHLCHLRIQLTF*PRTSFT
Trigger: TGTAAAAGAAGTTCTTGGCCAAAACGTCAACTGTAT...GCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR GCA 90 bp AAAACTAGGCACAATGAAGGAACAGTGTTGATAGAGGCCCTTCTTGGGTATGTCCCAAAGGTTTCTGTATaGAAAGCTGATGGGCCTGCT +
Preference number: 2 (lower is better)
Translates to: KTRHNEGTVLIEALLGYVPKVSV*KADGPA
Trigger: AGCAGGCCCATCAGCTTTGCATACAGAAACCTTTGG...GACATACCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATTGTGCCTAGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp GCACACAGTATCCAGATTGCTCAGACTGCTGTGTTGTCTCCCTTTTCCAAGTTGCCATGCAGATTTCTCTaGTTTGAAGAAGGAGTAGTA +
Preference number: 2 (lower is better)
Translates to: AHSIQIAQTAVLSPFSKLPCRFL*FEEGVV
Trigger: TACTACTCCTTCTTCAAAGCAGAGAAATCTGCATGG...CAACTTGGAAAAGGGAGACAACACAGCAGTCTGAGCAATCTGGATACTGTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR TCA 90 bp CTCAACACTACGTTCTGTCTTCAAACAGAGAATTTCTTCTGTGGGCCTCTTTGCCTTCTTGGGTATGTCTaGGATTTTCCAAGATGTAGC +
Preference number: 2 (lower is better)
Translates to: LNTTFCLQTENFFCGPLCLLGYV*DFPRCS
Trigger: GCTACATCTTGGAAAATCTCAGACATACCCAAGAAG...GCAAAGAGGCCCACAGAAGAAATTCTCTGTTTGAAGACAGAACGTAGTGTTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR TCA 90 bp AAAACTAGGCACAATGAAGGAACAGTGTTGATAGAGGCCCTTCTTGGGTATGTCCTTCTTGGGTATGTCTaGGATTTTCCAAGATGTAGC +
Preference number: 2 (lower is better)
Translates to: KTRHNEGTVLIEALLGYVLLGYV*DFPRCS
Trigger: GCTACATCTTGGAAAATCTCAGACATACCCAAGAAG...GACATACCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATTGTGCCTAGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR GCA 90 bp GAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTAAAGTCCCATGCAGATTTCTCTaGTTTGAAGAAGGAGTAGTA +
Preference number: 2 (lower is better)
Translates to: ETGDIPYLSPLRLFQTKVPCRFL*FEEGVV
Trigger: TACTACTCCTTCTTCAAAGCAGAGAAATCTGCATGG...GACTTTAGTTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CCA 90 bp CTGATGGAGAACAGATCTCCAGAATCCCACGATGGGCAGGTTCCTCAGCAAAAAATACAGTTGACGTTTTaGCCAAGAACTTCTTTTACA +
Preference number: 2 (lower is better)
Translates to: LMENRSPESHDGQVPQQKIQLTF*PRTSFT
Trigger: TGTAAAAGAAGTTCTTGGCCAAAACGTCAACTGTAT...TTTTTGCTGAGGAACCTGCCCATCGTGGGATTCTGGAGATCTGTTCTCCATCAG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CCA 72 bp CCCCAGGGATACACTGGCCTGGAAAGGGTACAGCGCTaGACCCCACACGGGAACCAGCAGGAAGGAGCTTGG +
Preference number: 3 (lower is better)
Translates to: PQGYTGLERVQR*TPHGNQQEGAW
Trigger: CCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCAGGCCAGTGTATCCCTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR GCA 72 bp AGCTCTGAACTCTACAGCCTCCGGCCTATCTGTTCATaGATCACCGGCCTTTCCAGCCTCGGGGCCCCGTGT +
Preference number: 3 (lower is better)
Translates to: SSELYSLRPICS*ITGLSSLGAPC
Trigger: ACACGGGGCCCCGAGGCTGGAAAGGCCGGTGATGCATGAACAGATAGGCCGGAGGCTGTAGAGTTCAGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CCA 72 bp TGGTCCAGATCCTCCTGGGGGCCCACACTCGCCATGTaGGCCCCATGTTTGACCAGTTTGTGCAGTTCAAGG +
Preference number: 3 (lower is better)
Translates to: WSRSSWGPTLAM*APCLTSLCSSR
Trigger: CCTTGAACTGCACAAACTGGTCAAACATGGGGCCCACATGGCGAGTGTGGGCCCCCAGGAGGATCTGGACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CAA 90 bp GTCATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGGGTGGGCCCATTCTTaGGTCTTTCTGTGGCCAGAG +
Preference number: 3 (lower is better)
Translates to: VIRQGRLWRGTKLVSGPRGWAHS*VFLWPE
Trigger: CTCTGGCCACAGAAAGACCAAAGAATGGGCCCACCC...CCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGATGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CAA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGGGGTGGGCCCATTCTTaGGTCTTTCTGTGGCCAGAG +
Preference number: 3 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRGWAHS*VFLWPE
Trigger: CTCTGGCCACAGAAAGACCAAAGAATGGGCCCACCC...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CAA 90 bp ATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGTAGGGTGGGCCCATTCTTaGGTCTTTCTGTGGCCAGAG +
Preference number: 3 (lower is better)
Translates to: IRQGRLWRGTKLVSGPRVGWAHS*VFLWPE
Trigger: CTCTGGCCACAGAAAGACCAAAGAATGGGCCCACCC...TACCCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CAA 90 bp CTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGACAGGACTCCCAGCTGCCTTACCTTGTGGTAATAACTaGCATGGGCCCCACCTGACC +
Preference number: 3 (lower is better)
Translates to: LRSGPGDRNLRTGLPAALPCGNN*HGPHLT
Trigger: GGTCAGGTGGGGCCCATGCAAGTTATTACCACAAGG...TAAGGCAGCTGGGAGTCCTGTCCTGAGGTTCCTATCCCCTGGACCACTCCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR GCA 72 bp TGCATCACCGGCCTTTCCAGCCTCGGGGCCCCGTGTTaGCTCTGCTCACACACTTTGCAGATATCAACACGT +
Preference number: 3 (lower is better)
Translates to: CITGLSSLGAPC*LCSHTLQISTR
Trigger: ACGTGTTGATATCTGCAAAGTGTGTGAGCAGAGGCAACACGGGGCCCCGAGGCTGGAAAGGCCGGTGATGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CCA 72 bp CCATGGGACCTAGGAGTCATCCGGCAAGGTAGGCTCTaGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGTA +
Preference number: 3 (lower is better)
Translates to: PWDLGVIRQGRL*RGTKLVSGPRV
Trigger: TACCCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGATGACTCCTAGGTCCCATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR TCA 72 bp CCTGGGGGCCCACACTCGCCATGTGGGCCCCATGTTTaGCCAGTTTGTGCAGTTCAAGGTGAGAACTTAACC +
Preference number: 3 (lower is better)
Translates to: PGGPHSPCGPHV*PVCAVQGENLT
Trigger: GGTTAAGTTCTCACCTTGAACTGCACAAACTGGTCAAACATGGGGCCCACATGGCGAGTGTGGGCCCCCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 72 bp ACCGGCCTTTCCAGCCTCGGGGCCCCGTGTTGCCTCTaGTCACACACTTTGCAGATATCAACACGTTTATGG +
Preference number: 3 (lower is better)
Translates to: TGLSSLGAPCCL*SHTLQISTRLW
Trigger: CCATAAACGTGTTGATATCTGCAAAGTGTGTGAGCAGAGGCAACACGGGGCCCCGAGGCTGGAAAGGCCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 72 bp GGTGGAGTGGCCCCAACTGAAGGGATGGCTGAAAGGTaGTCGCTGCTGGTCTCAACAGCTTTGTCATCTCTC +
Preference number: 3 (lower is better)
Translates to: GGVAPTEGMAER*SLLVSTALSSL
Trigger: GAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCCTTCAGTTGGGGCCACTCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CCA 72 bp TTCTTCCTTCCTCCTTCCTTATCTGGGGAGGTGGAGTaGCCCCAACTGAAGGGATGGCTGAAAGGTGCTCGC +
Preference number: 3 (lower is better)
Translates to: FFLPPSLSGEVE*PQLKGWLKGAR
Trigger: GCGAGCACCTTTCAGCCATCCCTTCAGTTGGGGCCACTCCACCTCCCCAGATAAGGAAGGAGGAAGGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CAA 90 bp GCAGCAGAAAGAACTGGTCCAGATCCTCCTGGGGGCCCACACTCGCCATGTGGGGAACTTCTTTTACACTaGACCTCAAAGCCCTGGGTT +
Preference number: 3 (lower is better)
Translates to: AAERTGPDPPGGPHSPCGELLLH*TSKPWV
Trigger: AACCCAGGGCTTTGAGGTCAAGTGTAAAAGAAGTTC...CCCACATGGCGAGTGTGGGCCCCCAGGAGGATCTGGACCAGTTCTTTCTGCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp GATTCGGAGGCTGCGCCGGGGGTAGGAAGGGATCTGTaGAACACTGAGCTCCGGATGGATGCATTTTACTGT +
Preference number: 3 (lower is better)
Translates to: DSEAAPGVGRDL*NTELRMDAFYC
Trigger: ACAGTAAAATGCATCCATCCGGAGCTCAGTGTTTCACAGATCCCTTCCTACCCCCGGCGCAGCCTCCGAATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp GTGATGCTGAAGCCGCAATGGAATCTGTTTCGCCAGTaGTTGAGGAAGGCTCCAAGGGCTAGGGTGACAGGC +
Preference number: 3 (lower is better)
Translates to: VMLKPQWNLFRQ*LRKAPRARVTG
Trigger: GCCTGTCACCCTAGCCCTTGGAGCCTTCCTCAATCACTGGCGAAACAGATTCCATTGCGGCTTCAGCATCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR GCA 72 bp TGGCCCCAACTGAAGGGATGGCTGAAAGGTGCTCGCTaGTGGTCTCAACAGCTTTGTCATCTCTCTTGCCTG +
Preference number: 3 (lower is better)
Translates to: WPQLKGWLKGAR*WSQQLCHLSCL
Trigger: CAGGCAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCCTTCAGTTGGGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp GGCTGCGCCGGGGGTAGGAAGGGATCTGTGAAACACTaGGCTCCGGATGGATGCATTTTACTGTTGTTTCCT +
Preference number: 3 (lower is better)
Translates to: GCAGGRKGSVKH*APDGCILLLFP
Trigger: AGGAAACAACAGTAAAATGCATCCATCCGGAGCTCAGTGTTTCACAGATCCCTTCCTACCCCCGGCGCAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp ATGGTAGAACGGTCCAGGGTATGTATCTCAGTGGTATaGGGTGTGGAGCAATGGCCAGGAGGCTCCTCAGTC +
Preference number: 3 (lower is better)
Translates to: MVERSRVCISVV*GVEQWPGGSSV
Trigger: GACTGAGGAGCCTCCTGGCCATTGCTCCACACCTCATACCACTGAGATACATACCCTGGACCGTTCTACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp AAGGGCAGCCAAGGCTGGGGCCTCTTACTAAAGCTCTaGACTCTACAGCCTCCGGCCTATCTGTTCATGCAT +
Preference number: 3 (lower is better)
Translates to: KGSQGWGLLLKL*TLQPPAYLFMH
Trigger: ATGCATGAACAGATAGGCCGGAGGCTGTAGAGTTCAGAGCTTTAGTAAGAGGCCCCAGCCTTGGCTGCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp AGGCACAGCGGCGGGCAGAGAAAGCATCTTTGCAACTaGATCAGCAGCAGAAAGAACTGGTCCAGATCCTCC +
Preference number: 3 (lower is better)
Translates to: RHSGGQRKHLCN*ISSRKNWSRSS
Trigger: GGAGGATCTGGACCAGTTCTTTCTGCTGCTGATTCAGTTGCAAAGATGCTTTCTCTGCCCGCCGCTGTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CCA 72 bp CCCCAACTGAAGGGATGGCTGAAAGGTGCTCGCTGCTaGTCTCAACAGCTTTGTCATCTCTCTTGCCTGACA +
Preference number: 3 (lower is better)
Translates to: PQLKGWLKGARC*SQQLCHLSCLT
Trigger: TGTCAGGCAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCCTTCAGTTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CAA 90 bp GACCTCAAAGCCCTGGGTTCAGGAAAAACTAGGCACAATGAAGGAACAGTGTTGCGGGGAGATTTGCAGTaGAGGCCCAGGCTTGCATCC +
Preference number: 3 (lower is better)
Translates to: DLKALGSGKTRHNEGTVLRGDLQ*RPRLAS
Trigger: GGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCG...CAACACTGTTCCTTCATTGTGCCTAGTTTTTCCTGAACCCAGGGCTTTGAGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CAA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGAATGAAGGAACAGTGTaGATAGAGGCCCTTCTTGGG +
Preference number: 3 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRNEGTV*IEALLG
Trigger: CCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATT...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CAA 90 bp CAGCAGCAGAAAGAACTGGTCCAGATCCTCCTGGGGGCCCACACTCGCCATGTGGGATGCATTTTACTGTaGTTTCCTTTGGGAAACCAG +
Preference number: 3 (lower is better)
Translates to: QQQKELVQILLGAHTRHVGCILL*FPLGNQ
Trigger: CTGGTTTCCCAAAGGAAACAACAGTAAAATGCATCC...CACATGGCGAGTGTGGGCCCCCAGGAGGATCTGGACCAGTTCTTTCTGCTGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CAA 90 bp TTCTTCCTTCCTCCTTCCTTATCTGGGGAGGTGGAGTGGCCCCAACTGAAGGGACTGGTCTCAACAGCTTaGTCATCTCTCTTGCCTGAC +
Preference number: 3 (lower is better)
Translates to: FFLPPSLSGEVEWPQLKGLVSTA*SSLLPD
Trigger: GTCAGGCAAGAGAGATGACAAAGCTGTTGAGACCAG...TCCCTTCAGTTGGGGCCACTCCACCTCCCCAGATAAGGAAGGAGGAAGGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp CACGGGAACCAGCAGGAAGGAGCTTGGGAGTGGCAATaGAATGCTGAACAGTCACTGTCTCTTAGTGCACTC +
Preference number: 3 (lower is better)
Translates to: HGNQQEGAWEWQ*NAEQSLSLSAL
Trigger: GAGTGCACTAAGAGACAGTGACTGTTCAGCATTTCATTGCCACTCCCAAGCTCCTTCCTGCTGGTTCCCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR TCA 72 bp ATCATCAAGTTCACCAAGGATCTGCCGCTCTTCCGGTaGGTAGCACATGGCCTTTCAGGAAGCAAGTGCTCG +
Preference number: 3 (lower is better)
Translates to: IIKFTKDLPLFR*VAHGLSGSKCS
Trigger: CGAGCACTTGCTTCCTGAAAGGCCATGTGCTACTCACCGGAAGAGCGGCAGATCCTTGGTGAACTTGATGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp CCTAGCACAAGCCGATGGGTGATGCTCTGCAGGAAGTaGGCAACCATGATCACTGATTCCCCAATCAGATCC +
Preference number: 3 (lower is better)
Translates to: PSTSRWVMLCRK*ATMITDSPIRS
Trigger: GGATCTGATTGGGGAATCAGTGATCATGGTTGCTCACTTCCTGCAGAGCATCACCCATCGGCTTGTGCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR GCA 72 bp GCCTCGGGGCCCCGTGTTGCCTCTGCTCACACACTTTaGAGATATCAACACGTTTATGGTGCAACAGATCAT +
Preference number: 3 (lower is better)
Translates to: ASGPRVASAHTL*RYQHVYGATDH
Trigger: ATGATCTGTTGCACCATAAACGTGTTGATATCTGCAAAGTGTGTGAGCAGAGGCAACACGGGGCCCCGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 72 bp TGGGTACCTGAGGAGGTAACCCACAGAAGAAGGCTATaGCCTGATGGAGAACAGATCTCCAGAATCCCACGA +
Preference number: 3 (lower is better)
Translates to: WVPEEVTHRRRL*PDGEQISRIPR
Trigger: TCGTGGGATTCTGGAGATCTGTTCTCCATCAGGGCATAGCCTTCTTCTGTGGGTTACCTCCTCAGGTACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CAA 90 bp TCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCGAGGGAAGGAGGGGTGGGCCCATTCTTaGGTCTTTCTGTGGCCAGAG +
Preference number: 3 (lower is better)
Translates to: SFCGQRFNSLILPSRGKEGWAHS*VFLWPE
Trigger: CTCTGGCCACAGAAAGACCAAAGAATGGGCCCACCC...CTCCTTCCCTCGGGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR-3UTR CAA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGGAACTTCTTTTACACTaGACCTCAAAGCCCTGGGTT +
Preference number: 3 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRELLLH*TSKPWV
Trigger: AACCCAGGGCTTTGAGGTCAAGTGTAAAAGAAGTTC...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR TCA 72 bp GCCTCTTTGCTACAAGATGGAGGACGCAGTCCATGGTaGGATGGTAGAACGGTCCAGGGTATGTATCTCAGT +
Preference number: 3 (lower is better)
Translates to: ASLLQDGGRSPW*DGRTVQGMYLS
Trigger: ACTGAGATACATACCCTGGACCGTTCTACCATCTCACCATGGACTGCGTCCTCCATCTTGTAGCAAAGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp TGGGCCCCATGTTTGACCAGTTTGTGCAGTTCAAGGTaGGAACTTAACCAGGATGTGACCTGGGTACCTGAG +
Preference number: 3 (lower is better)
Translates to: WAPCLTSLCSSR*ELNQDVTWVPE
Trigger: CTCAGGTACCCAGGTCACATCCTGGTTAAGTTCTCACCTTGAACTGCACAAACTGGTCAAACATGGGGCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 72 bp ACAGTGCAGGCTCAGACATCTATGCCACCTTCGCTCTaGTCATTCCCTAATGAATCCGTTTGCTACGAGGGA +
Preference number: 3 (lower is better)
Translates to: TVQAQTSMPPSL*SFPNESVCYEG
Trigger: TCCCTCGTAGCAAACGGATTCATTAGGGAATGAGCAGAGCGAAGGTGGCATAGATGTCTGAGCCTGCACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR GCA 72 bp CAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATaGCACCTTCGCTCTGCTCATTCCCTAATGAATCCG +
Preference number: 3 (lower is better)
Translates to: QSLVQQCRLRHL*HLRSAHSLMNP
Trigger: CGGATTCATTAGGGAATGAGCAGAGCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR GCA 72 bp CCCATCCATCGCACACAGTATCCAGATTGCTCAGACTaGTGTGTTGTCTCCCTTTTCCAAGTTGTTGGCTCC +
Preference number: 3 (lower is better)
Translates to: PIHRTQYPDCSD*CVVSLFQVVGS
Trigger: GGAGCCAACAACTTGGAAAAGGGAGACAACACAGCAGTCTGAGCAATCTGGATACTGTGTGCGATGGATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR GCA 72 bp TCGGACCACCCCATCCATCGCACACAGTATCCAGATTaGTCAGACTGCTGTGTTGTCTCCCTTTTCCAAGTT +
Preference number: 3 (lower is better)
Translates to: SDHPIHRTQYPD*SDCCVVSLFQV
Trigger: AACTTGGAAAAGGGAGACAACACAGCAGTCTGAGCAATCTGGATACTGTGTGCGATGGATGGGGTGGTCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CAA 90 bp CAGCTACAAGAGGAGATGGCGCTGATTCTGAACAACCACATTATGGAACAACAGCCAGCAGGAAGGAGCTaGGGAGTGGCAATGAAATGC +
Preference number: 3 (lower is better)
Translates to: QLQEEMALILNNHIMEQQPAGRS*GVAMKC
Trigger: GCATTTCATTGCCACTCCCAAGCTCCTTCCTGCTGG...CTGTTGTTCCATAATGTGGTTGTTCAGAATCAGCGCCATCTCCTCTTGTAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR-3UTR CAA 90 bp GGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAAAGTCGTATCTTGTAGCCTaGTATTTGCCTCAAACTCTA +
Preference number: 3 (lower is better)
Translates to: GGQPQGQSCSPETQGMGKSYLVA*YLPQTL
Trigger: TAGAGTTTGAGGCAAATACAAGGCTACAAGATACGA...CTTTCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
3UTR-3UTR CAA 90 bp CTCAGACATCTATGCCACCTTCGCTCTGCTCATTCCCTAATGAATCCGTTTGCTAATGAAGGAACAGTGTaGATAGAGGCCCTTCTTGGG +
Preference number: 3 (lower is better)
Translates to: LRHLCHLRSAHSLMNPFANEGTV*IEALLG
Trigger: CCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATT...AGCAAACGGATTCATTAGGGAATGAGCAGAGCGAAGGTGGCATAGATGTCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CAA 90 bp ACACAACCGCCTTCTAGAACTGGATCTAGAAGGCCTCACCTTCAGATTCTATACAATGAAGGAACAGTGTaGATAGAGGCCCTTCTTGGG +
Preference number: 3 (lower is better)
Translates to: TQPPSRTGSRRPHLQILYNEGTV*IEALLG
Trigger: CCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATT...GTATAGAATCTGAAGGTGAGGCCTTCTAGATCCAGTTCTAGAAGGCGGTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CAA 90 bp GAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTAAAGTCAATGAAGGAACAGTGTaGATAGAGGCCCTTCTTGGG +
Preference number: 3 (lower is better)
Translates to: ETGDIPYLSPLRLFQTKVNEGTV*IEALLG
Trigger: CCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATT...GACTTTAGTTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CAA 90 bp CTGATGGAGAACAGATCTCCAGAATCCCACGATGGGCAGGTTCCTCAGCAAAAATTACTGTTGTTTCCTTaGGGAAACCAGGTACTTAGG +
Preference number: 3 (lower is better)
Translates to: LMENRSPESHDGQVPQQKLLLFP*GNQVLR
Trigger: CCTAAGTACCTGGTTTCCCAAAGGAAACAACAGTAA...TTTTTGCTGAGGAACCTGCCCATCGTGGGATTCTGGAGATCTGTTCTCCATCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp GGAACAGTGTTGATAGAGGCCCTTCTTGGGTATGTCTaGGATTTTCCAAGATGTAGCTCCAGAGCATCTGCT +
Preference number: 3 (lower is better)
Translates to: GTVLIEALLGYV*DFPRCSSRASA
Trigger: AGCAGATGCTCTGGAGCTACATCTTGGAAAATCTCAGACATACCCAAGAAGGGCCTCTATCAACACTGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR TCA 72 bp AGTTTTTGGAGTCGATCCTCCACTTCCATAAAAACCTaGAAGGACTGCATCTCCAGGAGCCTGAGTATGTGC +
Preference number: 3 (lower is better)
Translates to: SFWSRSSTSIKT*KDCISRSLSMC
Trigger: GCACATACTCAGGCTCCTGGAGATGCAGTCCTTTCAGGTTTTTATGGAAGTGGAGGATCGACTCCAAAAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 72 bp TGTCTTCAAACAGAGAATTTCTTCTGTGGGCCTCTTTaGTACAAGATGGAGGACGCAGTCCATGGTGAGATG +
Preference number: 3 (lower is better)
Translates to: CLQTENFFCGPL*YKMEDAVHGEM
Trigger: CATCTCACCATGGACTGCGTCCTCCATCTTGTAGCAAAGAGGCCCACAGAAGAAATTCTCTGTTTGAAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp CAGGGATTCCCCTGCCATCAGGAAACATTAATTCAATaGAGTCCCAAGGAAGCCTCAGAAACTCTTTCTTCC +
Preference number: 3 (lower is better)
Translates to: QGFPCHQETLIQ*SPKEASETLSS
Trigger: GGAAGAAAGAGTTTCTGAGGCTTCCTTGGGACTTCATTGAATTAATGTTTCCTGATGGCAGGGGAATCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 72 bp TGCTCACACACTTTGCAGATATCAACACGTTTATGGTaGAACAGATCATCAAGTTCACCAAGGATCTGCCGC +
Preference number: 3 (lower is better)
Translates to: CSHTLQISTRLW*NRSSSSPRICR
Trigger: GCGGCAGATCCTTGGTGAACTTGATGATCTGTTGCACCATAAACGTGTTGATATCTGCAAAGTGTGTGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CCA 72 bp CTAGAGTTCCTTCTGGGAATGGGTGGGCCCATTCTTTaGTCTTTCTGTGGCCAGAGATTTAACTCTTTAATC +
Preference number: 3 (lower is better)
Translates to: LEFLLGMGGPIL*SFCGQRFNSLI
Trigger: GATTAAAGAGTTAAATCTCTGGCCACAGAAAGACCAAAGAATGGGCCCACCCATTCCCAGAAGGAACTCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR CCA 72 bp GGCCAAGAACTTCTTTTACACTTGACCTCAAAGCCCTaGGTTCAGGAAAAACTAGGCACAATGAAGGAACAG +
Preference number: 3 (lower is better)
Translates to: GQELLLHLTSKP*VQEKLGTMKEQ
Trigger: CTGTTCCTTCATTGTGCCTAGTTTTTCCTGAACCCAGGGCTTTGAGGTCAAGTGTAAAAGAAGTTCTTGGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CAA 90 bp GCTTTCCTGAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACAAAATTTCAAAGTCTaGTTCATTCTTTTGGCCCGC +
Preference number: 3 (lower is better)
Translates to: AFLRLVTFLTSHLSDFSKQNFKV*FILLAR
Trigger: GCGGGCCAAAAGAATGAACAAGACTTTGAAATTTTG...TTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTCAGGAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR GCA 72 bp AGATCTCCCTTCTCAAGGGAGCGGCTGTGGAAATATTaGATATCTCACTCAACACTACGTTCTGTCTTCAAA +
Preference number: 3 (lower is better)
Translates to: RSPFSRERLWKY*ISHSTLRSVFK
Trigger: TTTGAAGACAGAACGTAGTGTTGAGTGAGATATGCAATATTTCCACAGCCGCTCCCTTGAGAAGGGAGATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR GCA 72 bp TTATTCTCCACCCTCCCCTTCTTTCCCATGGTGCATTaGTTTCTGCTGAAGTGTATCACAGATGAATATGAG +
Preference number: 3 (lower is better)
Translates to: LFSTLPFFPMVH*FLLKCITDEYE
Trigger: CTCATATTCATCTGTGATACACTTCAGCAGAAAGCAATGCACCATGGGAAAGAAGGGGAGGGTGGAGAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR TCA 72 bp GGATCTAGAAGGCCTCACCTTCAGATTCTATACAGTTaGCGTTTTGGCCAAGAACTTCTTTTACACTTGACC +
Preference number: 3 (lower is better)
Translates to: GSRRPHLQILYS*RFGQELLLHLT
Trigger: GGTCAAGTGTAAAAGAAGTTCTTGGCCAAAACGTCAACTGTATAGAATCTGAAGGTGAGGCCTTCTAGATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR GCA 72 bp CCACCTTCGCTCTGCTCATTCCCTAATGAATCCGTTTaGTACGAGGGAGATGCTTTATACTATAGAATAACA +
Preference number: 3 (lower is better)
Translates to: PPSLCSFPNESV*YEGDALYYRIT
Trigger: TGTTATTCTATAGTATAAAGCATCTCCCTCGTAGCAAACGGATTCATTAGGGAATGAGCAGAGCGAAGGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR CCA 72 bp AAGGCCTCACCTTCAGATTCTATACAGTTGACGTTTTaGCCAAGAACTTCTTTTACACTTGACCTCAAAGCC +
Preference number: 3 (lower is better)
Translates to: KASPSDSIQLTF*PRTSFTLDLKA
Trigger: GGCTTTGAGGTCAAGTGTAAAAGAAGTTCTTGGCCAAAACGTCAACTGTATAGAATCTGAAGGTGAGGCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR-3UTR CAA 90 bp AAAACTAGGCACAATGAAGGAACAGTGTTGATAGAGGCCCTTCTTGGGTATGTCCAAAATTTCAAAGTCTaGTTCATTCTTTTGGCCCGC +
Preference number: 3 (lower is better)
Translates to: KTRHNEGTVLIEALLGYVQNFKV*FILLAR
Trigger: GCGGGCCAAAAGAATGAACAAGACTTTGAAATTTTG...GACATACCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATTGTGCCTAGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp AGACCCCCAGGGATACACTGGCCTGGAAAGGGTACAGCGCTGGACCCCACACGGCAGCCAGAGTCAAGATaGCCCCCTCTTCTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: RPPGIHWPGKGTALDPTRQPESR*PPLLLA
Trigger: GGCCAGGAGAAGAGGGGGCCATCTTGACTCTGGCTG...CCGTGTGGGGTCCAGCGCTGTACCCTTTCCAGGCCAGTGTATCCCTGGGGGTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp GCCGCTGCTCGGGGAGATTTGCAGTTGAGGCCCAGGCTTGCATCCTTTCCCCAGGGTTCCTCTCGACGGTaGCTCCGGCGGGGTAAAGTA +
Preference number: 4 (lower is better)
Translates to: AAARGDLQLRPRLASFPQGSSRR*LRRGKV
Trigger: TACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACC...CTGGGGAAAGGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCGAGCAGCGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR CAA 72 bp GTCTGCTATGACGCCGCTGCTCGGGGAGATTTGCAGTaGAGGCCCAGGCTTGCATCCTTTCCCCAGACCCCC +
Preference number: 4 (lower is better)
Translates to: VCYDAAARGDLQ*RPRLASFPQTP
Trigger: GGGGGTCTGGGGAAAGGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCGAGCAGCGGCGTCATAGCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR TCA 90 bp CTGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGCACAAGCCGATGGGTaGTGCTCTGCAGGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: LERVQRWTPHGNQQEGAWAQADG*CSAGSE
Trigger: CTCACTTCCTGCAGAGCATCACCCATCGGCTTGTGC...CCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp CTGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGTGCATGGGCCCCACCTaGCCCAACATTCAACGTAGC +
Preference number: 4 (lower is better)
Translates to: LERVQRWTPHGNQQEGAWCMGPT*PNIQRS
Trigger: GCTACGTTGAATGTTGGGTCAGGTGGGGCCCATGCA...CCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGACTCCAAGGGCTAGGGTaGCAGGCAGGGGACGCATCT +
Preference number: 4 (lower is better)
Translates to: GGGQPQGQSCSPETQGMGLQGLG*QAGDAS
Trigger: AGATGCGTCCCCTGCCTGTCACCCTAGCCCTTGGAG...TCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp GCCGCTGCTCGGGGAGATTTGCAGTTGAGGCCCAGGCTTGCATCCTTTCCCCAGGGCCTGCTGTGTCTTTaGACAACCGGTGCAGCTCGT +
Preference number: 4 (lower is better)
Translates to: AAARGDLQLRPRLASFPQGLLCL*TTGAAR
Trigger: ACGAGCTGCACCGGTTGTGCAAAGACACAGCAGGCC...CTGGGGAAAGGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCGAGCAGCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
CDS-3UTR GCA 90 bp GAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGAGAGCTCGCAGCCGTTCTaGCAACAGAAGCAAGACCTG +
Preference number: 4 (lower is better)
Translates to: ERVQRWTPHGNQQEGAWESSQPF*QQKQDL
Trigger: CAGGTCTTGCTTCTGTTGGCAGAACGGCTGCGAGCT...CTCCCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp TGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGGTCAGGAACTTGGCCTaGTGTGTCTGGAAGACAGCC +
Preference number: 4 (lower is better)
Translates to: WKGYSAGPHTGTSRKELGVRNLA*CVWKTA
Trigger: GGCTGTCTTCCAGACACAGCAGGCCAAGTTCCTGAC...CCCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp GTCATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGCAGCCAGAGTCAAGATaGCCCCCTCTTCTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: VIRQGRLWRGTKLVSGPRQPESR*PPLLLA
Trigger: GGCCAGGAGAAGAGGGGGCCATCTTGACTCTGGCTG...CCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGATGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR CAA 72 bp GGAACTGTCTGCTATGACGCCGCTGCTCGGGGAGATTaGCAGTTGAGGCCCAGGCTTGCATCCTTTCCCCAG +
Preference number: 4 (lower is better)
Translates to: GTVCYDAAARGD*QLRPRLASFPQ
Trigger: CTGGGGAAAGGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCGAGCAGCGGCGTCATAGCAGACAGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR TCA 90 bp CTGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGCTCATGTGCACAGTATaGGCCACCTGGAAATGGCTG +
Preference number: 4 (lower is better)
Translates to: LERVQRWTPHGNQQEGAWLMCTV*ATWKWL
Trigger: CAGCCATTTCCAGGTGGCTCATACTGTGCACATGAG...CCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp GGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGATCTTTGCACAACCGGTaGAGCTCGTCGAAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: GGGQPQGQSCSPETQGMGSLHNR*SSSKLP
Trigger: CGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGA...TCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR CCA 90 bp GGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAAAGGGTTCCTCTCGACGGTaGCTCCGGCGGGGTAAAGTA +
Preference number: 4 (lower is better)
Translates to: GGQPQGQSCSPETQGMGKGSSRR*LRRGKV
Trigger: TACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACC...CTTTCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR CCA 90 bp ATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGTATATCCCCCACCACAGTaGGGAACACCTCTGTGGGGC +
Preference number: 4 (lower is better)
Translates to: IRQGRLWRGTKLVSGPRVYPPPQ*GTPLWG
Trigger: GCCCCACAGAGGTGTTCCCCACTGTGGTGGGGGATA...TACCCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp GCCGCTGCTCGGGGAGATTTGCAGTTGAGGCCCAGGCTTGCATCCTTTCCCCAGGCCATGTCAGGAACTTaGCCTGCTGTGTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: AAARGDLQLRPRLASFPQAMSGT*PAVSGR
Trigger: TCTTCCAGACACAGCAGGCCAAGTTCCTGACATGGC...CTGGGGAAAGGATGCAAGCCTGGGCCTCAACTGCAAATCTCCCCGAGCAGCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp AGACCCCCAGGGATACACTGGCCTGGAAAGGGTACAGCGCTGGACCCCACACGGGGAAGTGAGCAACCATaGTCACTGATTCCCCAATCA +
Preference number: 4 (lower is better)
Translates to: RPPGIHWPGKGTALDPTRGSEQP*SLIPQS
Trigger: TGATTGGGGAATCAGTGATCATGGTTGCTCACTTCC...CCGTGTGGGGTCCAGCGCTGTACCCTTTCCAGGCCAGTGTATCCCTGGGGGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp GGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAAAGTCTTTGCACAACCGGTaGAGCTCGTCGAAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: GGQPQGQSCSPETQGMGKSLHNR*SSSKLP
Trigger: CGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGA...CTTTCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR GCA 90 bp AAGGGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGTCTTTGCACAACCGGTaGAGCTCGTCGAAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: KGGGQPQGQSCSPETQGMSLHNR*SSSKLP
Trigger: CGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGA...CATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR CCA 90 bp GTCATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGTTCCCAGGGTCAGAGTaGCTGTGTAGTCATCTCCCC +
Preference number: 4 (lower is better)
Translates to: VIRQGRLWRGTKLVSGPRFPGSE*LCSHLP
Trigger: GGGGAGATGACTACACAGCCACTCTGACCCTGGGAA...CCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGATGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR CAA 72 bp ATGCATCACCGGCCTTTCCAGCCTCGGGGCCCCGTGTaGCCTCTGCTCACACACTTTGCAGATATCAACACG +
Preference number: 4 (lower is better)
Translates to: MHHRPFQPRGPV*PLLTHFADINT
Trigger: CGTGTTGATATCTGCAAAGTGTGTGAGCAGAGGCAACACGGGGCCCCGAGGCTGGAAAGGCCGGTGATGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR GCA 90 bp ATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGTAGTCAGGAACTTGGCCTaGTGTGTCTGGAAGACAGCC +
Preference number: 4 (lower is better)
Translates to: IRQGRLWRGTKLVSGPRVVRNLA*CVWKTA
Trigger: GGCTGTCTTCCAGACACAGCAGGCCAAGTTCCTGAC...TACCCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp AGACCCCCAGGGATACACTGGCCTGGAAAGGGTACAGCGCTGGACCCCACACGGGCCTTCCATCTGTGCTaGGAATACATCTTTGCACAA +
Preference number: 4 (lower is better)
Translates to: RPPGIHWPGKGTALDPTRAFHLC*EYIFAQ
Trigger: TTGTGCAAAGATGTATTCCCAGCACAGATGGAAGGC...CCGTGTGGGGTCCAGCGCTGTACCCTTTCCAGGCCAGTGTATCCCTGGGGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGCCTAGCACAAGCCGATaGGTGATGCTCTGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRPSTSR*VMLCRK
Trigger: CTTCCTGCAGAGCATCACCCATCGGCTTGTGCTAGG...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp GGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAAAGCCTAGCACAAGCCGATaGGTGATGCTCTGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: GGQPQGQSCSPETQGMGKPSTSR*VMLCRK
Trigger: CTTCCTGCAGAGCATCACCCATCGGCTTGTGCTAGG...CTTTCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp TGCTGCTCAGACTTAGCCTCTCTGAGGAGTGGTCCAGGGGATAGGAACCTCAGGTGTTTCGCCAGTGATTaGGGAAGGCTCCAAGGGCTA +
Preference number: 4 (lower is better)
Translates to: CCSDLASLRSGPGDRNLRCFASD*GRLQGL
Trigger: TAGCCCTTGGAGCCTTCCTCAATCACTGGCGAAACA...CCTGAGGTTCCTATCCCCTGGACCACTCCTCAGAGAGGCTAAGTCTGAGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp CAGCAGCAGAAAGAACTGGTCCAGATCCTCCTGGGGGCCCACACTCGCCATGTGCACGCCTTCCATCTGTaGTGGGAATACATCTTTGCA +
Preference number: 4 (lower is better)
Translates to: QQQKELVQILLGAHTRHVHAFHL*WEYIFA
Trigger: TGCAAAGATGTATTCCCAGCACAGATGGAAGGCGTG...CACATGGCGAGTGTGGGCCCCCAGGAGGATCTGGACCAGTTCTTTCTGCTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR GCA 90 bp GAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAAGTCAGGAACTTGGCCTaGTGTGTCTTTGCACAACCG +
Preference number: 4 (lower is better)
Translates to: EVGNHRAKVVLRKHRGWEVRNLA*CVFAQP
Trigger: CGGTTGTGCAAAGACACAGCAGGCCAAGTTCCTGAC...TTCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
CDS-3UTR CCA 90 bp CTCAGACATCTATGCCACCTTCGCTCTGCTCATTCCCTAATGAATCCGTTTGCTCGAAGCTCCCGGGGTTaGGCAGCGGTTCCTCTCGAC +
Preference number: 4 (lower is better)
Translates to: LRHLCHLRSAHSLMNPFARSSRG*AAVPLD
Trigger: GTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCG...AGCAAACGGATTCATTAGGGAATGAGCAGAGCGAAGGTGGCATAGATGTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp CACGGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCTTCCCAGGGTCAGAGTaGCTGTGTAGTCATCTCCCC +
Preference number: 4 (lower is better)
Translates to: HGQSLVQQCRLRHLCHLRFPGSE*LCSHLP
Trigger: GGGGAGATGACTACACAGCCACTCTGACCCTGGGAA...GCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp ATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGTATGCTCAGAACCTTGTTaGCAACCAGCTTCACGCCTT +
Preference number: 4 (lower is better)
Translates to: IRQGRLWRGTKLVSGPRVCSEPC*QPASRL
Trigger: AAGGCGTGAAGCTGGTTGTCAACAAGGTTCTGAGCA...TACCCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp TTCTTCCTTCCTCCTTCCTTATCTGGGGAGGTGGAGTGGCCCCAACTGAAGGGACTCATGTGCACAGTATaGGCCACCTGGAAATGGCTG +
Preference number: 4 (lower is better)
Translates to: FFLPPSLSGEVEWPQLKGLMCTV*ATWKWL
Trigger: CAGCCATTTCCAGGTGGCTCATACTGTGCACATGAG...TCCCTTCAGTTGGGGCCACTCCACCTCCCCAGATAAGGAAGGAGGAAGGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR TCA 90 bp GGAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAATGCTCTGCAGGAAGTaGGCAACCATGATCACTGAT +
Preference number: 4 (lower is better)
Translates to: GGGQPQGQSCSPETQGMGMLCRK*ATMITD
Trigger: ATCAGTGATCATGGTTGCTCACTTCCTGCAGAGCAT...TCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GTAGAGATGCAAAGTCGTAGCTCATGGCCTGGGTGTGACAGCTTTCCTGAGACTGCACAAGCCGATGGGTaGTGCTCTGCAGGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: VEMQSRSSWPGCDSFPETAQADG*CSAGSE
Trigger: CTCACTTCCTGCAGAGCATCACCCATCGGCTTGTGC...AGTCTCAGGAAAGCTGTCACACCCAGGCCATGAGCTACGACTTTGCATCTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp GAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTAAAGTCCGAAGCTCCCGGGGTTaGGCAGCGGTTCCTCTCGAC +
Preference number: 4 (lower is better)
Translates to: ETGDIPYLSPLRLFQTKVRSSRG*AAVPLD
Trigger: GTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCG...GACTTTAGTTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp ACCAAGTTAGTCTCTGGCCCTAGGGTATCAGACTCAAAGGTTCCAGCTGCTGCAATGGAGGTGGTACCCTaGCAAGCCCAGGGCACTCAT +
Preference number: 4 (lower is better)
Translates to: TKLVSGPRVSDSKVPAAAMEVVP*QAQGTH
Trigger: ATGAGTGCCCTGGGCTTGCCAGGGTACCACCTCCAT...TGCAGCAGCTGGAACCTTTGAGTCTGATACCCTAGGGCCAGAGACTAACTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp CACGGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCAACAGAAGCAAGACCTaGGCGTTGAGACTGCCACTG +
Preference number: 4 (lower is better)
Translates to: HGQSLVQQCRLRHLCHLRNRSKT*ALRLPL
Trigger: CAGTGGCAGTCTCAACGCCCAGGTCTTGCTTCTGTT...GCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCCGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp ATCCGGCAAGGTAGGCTCTGGAGAGGGACCAAGTTAGTCTCTGGCCCTAGGGTAATGCTCTGCAGGAAGTaGGCAACCATGATCACTGAT +
Preference number: 4 (lower is better)
Translates to: IRQGRLWRGTKLVSGPRVMLCRK*ATMITD
Trigger: ATCAGTGATCATGGTTGCTCACTTCCTGCAGAGCAT...TACCCTAGGGCCAGAGACTAACTTGGTCCCTCTCCAGAGCCTACCTTGCCGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTAAAGTCCTCCAAGGGCTAGGGTaGCAGGCAGGGGACGCATCT +
Preference number: 4 (lower is better)
Translates to: ETGDIPYLSPLRLFQTKVLQGLG*QAGDAS
Trigger: AGATGCGTCCCCTGCCTGTCACCCTAGCCCTTGGAG...GACTTTAGTTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GGTGGGCCCATTCTTTGGTCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCTCCAAGGGCTAGGGTaGCAGGCAGGGGACGCATCT +
Preference number: 4 (lower is better)
Translates to: GGPILWSFCGQRFNSLILLQGLG*QAGDAS
Trigger: AGATGCGTCCCCTGCCTGTCACCCTAGCCCTTGGAG...GAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGACCAAAGAATGGGCCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp TGGGAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTAAGCTCGCAGCCGTTCTaGCAACAGAAGCAAGACCTG +
Preference number: 4 (lower is better)
Translates to: WEIIVGLMAVLGTSTRYLSSQPF*QQKQDL
Trigger: CAGGTCTTGCTTCTGTTGGCAGAACGGCTGCGAGCT...TAGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp CACGGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCTACTCGCCATCAAACTaGCATGTCAGGAACTTGGCC +
Preference number: 4 (lower is better)
Translates to: HGQSLVQQCRLRHLCHLRYSPSN*HVRNLA
Trigger: GGCCAAGTTCCTGACATGGCAGTTTGATGGCGAGTA...GCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp TCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCGAGGGAAGGAGTATCCCCCACCACAGTaGGGAACACCTCTGTGGGGC +
Preference number: 4 (lower is better)
Translates to: SFCGQRFNSLILPSRGKEYPPPQ*GTPLWG
Trigger: GCCCCACAGAGGTGTTCCCCACTGTGGTGGGGGATA...CTCCTTCCCTCGGGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp ACCAAGTTAGTCTCTGGCCCTAGGGTATCAGACTCAAAGGTTCCAGCTGCTGCATTCCCAGGGTCAGAGTaGCTGTGTAGTCATCTCCCC +
Preference number: 4 (lower is better)
Translates to: TKLVSGPRVSDSKVPAAAFPGSE*LCSHLP
Trigger: GGGGAGATGACTACACAGCCACTCTGACCCTGGGAA...TGCAGCAGCTGGAACCTTTGAGTCTGATACCCTAGGGCCAGAGACTAACTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
3UTR CAA 72 bp CTCGGACCACCCCATCCATCGCACACAGTATCCAGATaGCTCAGACTGCTGTGTTGTCTCCCTTTTCCAAGT +
Preference number: 4 (lower is better)
Translates to: LGPPHPSHTVSR*LRLLCCLPFPS
Trigger: ACTTGGAAAAGGGAGACAACACAGCAGTCTGAGCAATCTGGATACTGTGTGCGATGGATGGGGTGGTCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GGGATGGCTGAAAGGTGCTCGCTGCTGGTCTCAACAGCTTTGTCATCTCTCTTGTGCTCAGAACCTTGTTaGCAACCAGCTTCACGCCTT +
Preference number: 4 (lower is better)
Translates to: GMAERCSLLVSTALSSLLCSEPC*QPASRL
Trigger: AAGGCGTGAAGCTGGTTGTCAACAAGGTTCTGAGCA...CAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCATCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR TCA 90 bp GCACACAGTATCCAGATTGCTCAGACTGCTGTGTTGTCTCCCTTTTCCAAGTTGGCACAAGCCGATGGGTaGTGCTCTGCAGGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: AHSIQIAQTAVLSPFSKLAQADG*CSAGSE
Trigger: CTCACTTCCTGCAGAGCATCACCCATCGGCTTGTGC...CAACTTGGAAAAGGGAGACAACACAGCAGTCTGAGCAATCTGGATACTGTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GCTTTCCTGAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAATGCATGGGCCCCACCTaGCCCAACATTCAACGTAGC +
Preference number: 4 (lower is better)
Translates to: AFLRLVTFLTSHLSDFSKCMGPT*PNIQRS
Trigger: GCTACGTTGAATGTTGGGTCAGGTGGGGCCCATGCA...TTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTCAGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GACCTCAAAGCCCTGGGTTCAGGAAAAACTAGGCACAATGAAGGAACAGTGTTGTGCATGGGCCCCACCTaGCCCAACATTCAACGTAGC +
Preference number: 4 (lower is better)
Translates to: DLKALGSGKTRHNEGTVLCMGPT*PNIQRS
Trigger: GCTACGTTGAATGTTGGGTCAGGTGGGGCCCATGCA...CAACACTGTTCCTTCATTGTGCCTAGTTTTTCCTGAACCCAGGGCTTTGAGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp ATGGGAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTTGTTTCGCCAGTGATTaGGGAAGGCTCCAAGGGCTA +
Preference number: 4 (lower is better)
Translates to: MGDYSGADGSIGNLNPLPCFASD*GRLQGL
Trigger: TAGCCCTTGGAGCCTTCCTCAATCACTGGCGAAACA...AGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCTCTAATCTGTTTCGCCAGTaGTTGAGGAAGGCTCCAAGG +
Preference number: 4 (lower is better)
Translates to: GQSLVQQCRLRHLCHLRSNLFRQ*LRKAPR
Trigger: CCTTGGAGCCTTCCTCAATCACTGGCGAAACAGATT...AGAGCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp GCCATACAGCTTATGGGAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCCCTAGCACAAGCCGATaGGTGATGCTCTGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: AIQLMGDYSGADGSIGNLPSTSR*VMLCRK
Trigger: CTTCCTGCAGAGCATCACCCATCGGCTTGTGCTAGG...GAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTCCCATAAGCTGTATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp ACCAAGTTAGTCTCTGGCCCTAGGGTATCAGACTCAAAGGTTCCAGCTGCTGCAAATCTGTTTCGCCAGTaGTTGAGGAAGGCTCCAAGG +
Preference number: 4 (lower is better)
Translates to: TKLVSGPRVSDSKVPAAANLFRQ*LRKAPR
Trigger: CCTTGGAGCCTTCCTCAATCACTGGCGAAACAGATT...TGCAGCAGCTGGAACCTTTGAGTCTGATACCCTAGGGCCAGAGACTAACTTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp GTAGAGATGCAAAGTCGTAGCTCATGGCCTGGGTGTGACAGCTTTCCTGAGACTTACTCGCCATCAAACTaGCATGTCAGGAACTTGGCC +
Preference number: 4 (lower is better)
Translates to: VEMQSRSSWPGCDSFPETYSPSN*HVRNLA
Trigger: GGCCAAGTTCCTGACATGGCAGTTTGATGGCGAGTA...AGTCTCAGGAAAGCTGTCACACCCAGGCCATGAGCTACGACTTTGCATCTCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp TTTACACTTGACCTCAAAGCCCTGGGTTCAGGAAAAACTAGGCACAATGAAGGAGGTTCCTCTCGACGGTaGCTCCGGCGGGGTAAAGTA +
Preference number: 4 (lower is better)
Translates to: FTLDLKALGSGKTRHNEGGSSRR*LRRGKV
Trigger: TACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACC...TCCTTCATTGTGCCTAGTTTTTCCTGAACCCAGGGCTTTGAGGTCAAGTGTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR CCA 90 bp TTCTTCCTTCCTCCTTCCTTATCTGGGGAGGTGGAGTGGCCCCAACTGAAGGGAGCCTTCCATCTGTGCTaGGAATACATCTTTGCACAA +
Preference number: 4 (lower is better)
Translates to: FFLPPSLSGEVEWPQLKGAFHLC*EYIFAQ
Trigger: TTGTGCAAAGATGTATTCCCAGCACAGATGGAAGGC...TCCCTTCAGTTGGGGCCACTCCACCTCCCCAGATAAGGAAGGAGGAAGGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR CCA 90 bp CACGGACAGAGCCTAGTTCAACAGTGCAGGCTCAGACATCTATGCCACCTTCGCGCCTTCCATCTGTGCTaGGAATACATCTTTGCACAA +
Preference number: 4 (lower is better)
Translates to: HGQSLVQQCRLRHLCHLRAFHLC*EYIFAQ
Trigger: TTGTGCAAAGATGTATTCCCAGCACAGATGGAAGGC...GCGAAGGTGGCATAGATGTCTGAGCCTGCACTGTTGAACTAGGCTCTGTCCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp AAGCCAGACACATCCCGTAGTCCCTCTCCTTTACTCCAGAGCCATACAGCTTATAACAGAAGCAAGACCTaGGCGTTGAGACTGCCACTG +
Preference number: 4 (lower is better)
Translates to: KPDTSRSPSPLLQSHTAYNRSKT*ALRLPL
Trigger: CAGTGGCAGTCTCAACGCCCAGGTCTTGCTTCTGTT...ATAAGCTGTATGGCTCTGGAGTAAAGGAGAGGGACTACGGGATGTGTCTGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005817.9
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp CTGATGGAGAACAGATCTCCAGAATCCCACGATGGGCAGGTTCCTCAGCAAAAAGCCATGTCAGGAACTTaGCCTGCTGTGTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: LMENRSPESHDGQVPQQKAMSGT*PAVSGR
Trigger: TCTTCCAGACACAGCAGGCCAAGTTCCTGACATGGC...TTTTTGCTGAGGAACCTGCCCATCGTGGGATTCTGGAGATCTGTTCTCCATCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR CCA 90 bp TTTACACTTGACCTCAAAGCCCTGGGTTCAGGAAAAACTAGGCACAATGAAGGACAGCCAGAGTCAAGATaGCCCCCTCTTCTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: FTLDLKALGSGKTRHNEGQPESR*PPLLLA
Trigger: GGCCAGGAGAAGAGGGGGCCATCTTGACTCTGGCTG...TCCTTCATTGTGCCTAGTTTTTCCTGAACCCAGGGCTTTGAGGTCAAGTGTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTAACTTGCTCAGAACCTTGTTaGCAACCAGCTTCACGCCTT +
Preference number: 4 (lower is better)
Translates to: EIIVGLMAVLGTSTRYLTCSEPC*QPASRL
Trigger: AAGGCGTGAAGCTGGTTGTCAACAAGGTTCTGAGCA...AGTTAGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp GTAGAGATGCAAAGTCGTAGCTCATGGCCTGGGTGTGACAGCTTTCCTGAGACTGGAAGTGAGCAACCATaGTCACTGATTCCCCAATCA +
Preference number: 4 (lower is better)
Translates to: VEMQSRSSWPGCDSFPETGSEQP*SLIPQS
Trigger: TGATTGGGGAATCAGTGATCATGGTTGCTCACTTCC...AGTCTCAGGAAAGCTGTCACACCCAGGCCATGAGCTACGACTTTGCATCTCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp ACAGAGAATTTCTTCTGTGGGCCTCTTTGCTACAAGATGGAGGACGCAGTCCATTGTTTCGCCAGTGATTaGGGAAGGCTCCAAGGGCTA +
Preference number: 4 (lower is better)
Translates to: TENFFCGPLCYKMEDAVHCFASD*GRLQGL
Trigger: TAGCCCTTGGAGCCTTCCTCAATCACTGGCGAAACA...ATGGACTGCGTCCTCCATCTTGTAGCAAAGAGGCCCACAGAAGAAATTCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR GCA 90 bp CCCATTCTTTGGTCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCTCTTTGCACAACCGGTaGAGCTCGTCGAAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: PILWSFCGQRFNSLILPSSLHNR*SSSKLP
Trigger: CGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGA...GGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGACCAAAGAATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR CCA 90 bp ACACAACCGCCTTCTAGAACTGGATCTAGAAGGCCTCACCTTCAGATTCTATACGCCATGTCAGGAACTTaGCCTGCTGTGTCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: TQPPSRTGSRRPHLQILYAMSGT*PAVSLW
Trigger: CCACAGAGACACAGCAGGCCAAGTTCCTGACATGGC...GTATAGAATCTGAAGGTGAGGCCTTCTAGATCCAGTTCTAGAAGGCGGTTGTGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111326.8
3UTR CAA 72 bp AGTATAAACAATGCATACTCCTATGAACTTCAGCGCTaGGAGGAACTGTCTGCTATGACGCCGCTGCTCGGG +
Preference number: 4 (lower is better)
Translates to: SINNAYSYELQR*EELSAMTPLLG
Trigger: CCCGAGCAGCGGCGTCATAGCAGACAGTTCCTCCAAGCGCTGAAGTTCATAGGAGTATGCATTGTTTATACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
3UTR CAA 72 bp ATGGCTGAAAGGTGCTCGCTGCTGGTCTCAACAGCTTaGTCATCTCTCTTGCCTGACACAGTGATACTGTCA +
Preference number: 4 (lower is better)
Translates to: MAERCSLLVSTA*SSLLPDTVILS
Trigger: TGACAGTATCACTGTGTCAGGCAAGAGAGATGACAAAGCTGTTGAGACCAGCAGCGAGCACCTTTCAGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR TCA 90 bp GGCCTGCTGGCTGACCTCCGGAGTATAAACAATGCATACTCCTATGAACTTCAGGGAAGTGAGCAACCATaGTCACTGATTCCCCAATCA +
Preference number: 4 (lower is better)
Translates to: GLLADLRSINNAYSYELQGSEQP*SLIPQS
Trigger: TGATTGGGGAATCAGTGATCATGGTTGCTCACTTCC...CTGAAGTTCATAGGAGTATGCATTGTTTATACTCCGGAGGTCAGCCAGCAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp TTTACACTTGACCTCAAAGCCCTGGGTTCAGGAAAAACTAGGCACAATGAAGGAGTCAGGAACTTGGCCTaGTGTGTCTCTGTGGGGCTA +
Preference number: 4 (lower is better)
Translates to: FTLDLKALGSGKTRHNEGVRNLA*CVSVGL
Trigger: TAGCCCCACAGAGACACAGCAGGCCAAGTTCCTGAC...TCCTTCATTGTGCCTAGTTTTTCCTGAACCCAGGGCTTTGAGGTCAAGTGTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111326.8
CDS-3UTR CCA 90 bp CTACGTTCTGTCTTCAAACAGAGAATTTCTTCTGTGGGCCTCTTTGCTACAAGAATGGAGGTGGTACCCTaGCAAGCCCAGGGCACTCAT +
Preference number: 4 (lower is better)
Translates to: LRSVFKQRISSVGLFATRMEVVP*QAQGTH
Trigger: ATGAGTGCCCTGGGCTTGCCAGGGTACCACCTCCAT...TCTTGTAGCAAAGAGGCCCACAGAAGAAATTCTCTGTTTGAAGACAGAACGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR TCA 90 bp TCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCGAGGGAAGGAGATGCTCTGCAGGAAGTaGGCAACCATGATCACTGAT +
Preference number: 4 (lower is better)
Translates to: SFCGQRFNSLILPSRGKEMLCRK*ATMITD
Trigger: ATCAGTGATCATGGTTGCTCACTTCCTGCAGAGCAT...CTCCTTCCCTCGGGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp ACCAAGTTAGTCTCTGGCCCTAGGGTATCAGACTCAAAGGTTCCAGCTGCTGCACCTGAACCTGTTCATTaGCCTTGTGGTAATAACTTG +
Preference number: 4 (lower is better)
Translates to: TKLVSGPRVSDSKVPAAAPEPVH*PCGNNL
Trigger: CAAGTTATTACCACAAGGCCAATGAACAGGTTCAGG...TGCAGCAGCTGGAACCTTTGAGTCTGATACCCTAGGGCCAGAGACTAACTTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR TCA 90 bp CCCATTCTTTGGTCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCAATCTGTTTCGCCAGTaGTTGAGGAAGGCTCCAAGG +
Preference number: 4 (lower is better)
Translates to: PILWSFCGQRFNSLILPSNLFRQ*LRKAPR
Trigger: CCTTGGAGCCTTCCTCAATCACTGGCGAAACAGATT...GGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGACCAAAGAATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR GCA 90 bp CCCATTCTTTGGTCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCTACTCGCCATCAAACTaGCATGTCAGGAACTTGGCC +
Preference number: 4 (lower is better)
Translates to: PILWSFCGQRFNSLILPSYSPSN*HVRNLA
Trigger: GGCCAAGTTCCTGACATGGCAGTTTGATGGCGAGTA...GGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGACCAAAGAATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp GGCCTGCTGGCTGACCTCCGGAGTATAAACAATGCATACTCCTATGAACTTCAGCCTGAACCTGTTCATTaGCCTTGTGGTAATAACTTG +
Preference number: 4 (lower is better)
Translates to: GLLADLRSINNAYSYELQPEPVH*PCGNNL
Trigger: CAAGTTATTACCACAAGGCCAATGAACAGGTTCAGG...CTGAAGTTCATAGGAGTATGCATTGTTTATACTCCGGAGGTCAGCCAGCAGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CCA 90 bp GATAGACCTAAGTCTAAAGTGCCCTTGTTTTCTACCCGACACAGGTCCCTAACCCCTGAACCTGTTCATTaGCCTTGTGGTAATAACTTG +
Preference number: 4 (lower is better)
Translates to: DRPKSKVPLFSTRHRSLTPEPVH*PCGNNL
Trigger: CAAGTTATTACCACAAGGCCAATGAACAGGTTCAGG...GGTTAGGGACCTGTGTCGGGTAGAAAACAAGGGCACTTTAGACTTAGGTCTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
3UTR CAA 72 bp CAGATCTCCCTTCTCAAGGGAGCGGCTGTGGAAATATaGCATATCTCACTCAACACTACGTTCTGTCTTCAA +
Preference number: 4 (lower is better)
Translates to: QISLLKGAAVEI*HISLNTTFCLQ
Trigger: TTGAAGACAGAACGTAGTGTTGAGTGAGATATGCAATATTTCCACAGCCGCTCCCTTGAGAAGGGAGATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS CCA 90 bp AGCTCGTCGAAGCTCCCGGGGTTGGGCAGCGGTTCCTCTCGACGGTaGCTCCGGCGGGGTAAAGTACCCATCGGTGCCAGGCCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: SSSKLPGLGSGSSRR*LRRGKVPIGARPRV
Trigger: CACCCTGGGCCTGGCACCGATGGGTACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGACGAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000143405.2
ENSMUST00000147246.2
CDS CCA 90 bp CTGTGTCTTTGCACAACCGGTGCAGCTCGTCGAAGCTCCCGGGGTTaGGCAGCGGTTCCTCTCGACGGTGGCTCCGGCGGGGTAAAGTAC +
Preference number: 5 (lower is better)
Translates to: LCLCTTGAARRSSRG*AAVPLDGGSGGVKY
Trigger: GTACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGACACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
CDS-3UTR CAA 90 bp CTGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGTCGAAGCTCCCGGGGTaGGGCAGCGGTTCCTCTCGA +
Preference number: 5 (lower is better)
Translates to: LERVQRWTPHGNQQEGAWSKLPG*GSGSSR
Trigger: TCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGA...CCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS CCA 90 bp ATACATCTTTGCACAACCGGTGCAGCTCGTCGAAGCTCCCGGGGTTaGGCAGCGGTTCCTCTCGACGGTGGCTCCGGCGGGGTAAAGTAC +
Preference number: 5 (lower is better)
Translates to: IHLCTTGAARRSSRG*AAVPLDGGSGGVKY
Trigger: GTACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGATGTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000147246.2
CDS CCA 90 bp GCTAAGCTGCCAGTCCCCTGCATAGGCGGTATGGAGGTGGTACCCTaGCAAGCCCAGGGCACTCATGTGCACAGTATGAGCCACCTGGAA +
Preference number: 5 (lower is better)
Translates to: AKLPVPCIGGMEVVP*QAQGTHVHSMSHLE
Trigger: TTCCAGGTGGCTCATACTGTGCACATGAGTGCCCTGGGCTTGCCAGGGTACCACCTCCATACCGCCTATGCAGGGGACTGGCAGCTTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000147246.2
CDS-3UTR CAA 90 bp CTGGAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGTGCCATGTCAGGAACTaGGCCTGCTGTGTCTTTGCA +
Preference number: 5 (lower is better)
Translates to: LERVQRWTPHGNQQEGAWCHVRN*ACCVFA
Trigger: TGCAAAGACACAGCAGGCCAAGTTCCTGACATGGCA...CCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
CDS-3UTR CAA 90 bp GAGGTGGGCAACCACAGGGCCAAAGTTGTTCTCCGGAAACACAGGGGATGGGAATGGCTGCTCAGAACCTaGTTGACAACCAGCTTCACG +
Preference number: 5 (lower is better)
Translates to: EVGNHRAKVVLRKHRGWEWLLRT*LTTSFT
Trigger: CGTGAAGCTGGTTGTCAACAAGGTTCTGAGCAGCCA...TTCCCATCCCCTGTGTTTCCGGAGAACAACTTTGGCCCTGTGGTTGCCCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CAA 90 bp CTTCTCAAGGGAGCGGCTGTGGAAATATTGCATATCTCACTCAACACTACGTTCTCGAAGCTCCCGGGGTaGGGCAGCGGTTCCTCTCGA +
Preference number: 5 (lower is better)
Translates to: LLKGAAVEILHISLNTTFSKLPG*GSGSSR
Trigger: TCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGA...GAACGTAGTGTTGAGTGAGATATGCAATATTTCCACAGCCGCTCCCTTGAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005817.9
CDS-3UTR CAA 90 bp AAAACTAGGCACAATGAAGGAACAGTGTTGATAGAGGCCCTTCTTGGGTATGTCTCGAAGCTCCCGGGGTaGGGCAGCGGTTCCTCTCGA +
Preference number: 5 (lower is better)
Translates to: KTRHNEGTVLIEALLGYVSKLPG*GSGSSR
Trigger: TCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGA...GACATACCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATTGTGCCTAGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000143405.2
CDS-3UTR CAA 90 bp TCATGGCCTGGGTGTGACAGCTTTCCTGAGACTGGTGACATTCCTTACCTCTCACCTTGTGGTAATAACTaGCATGGGCCCCACCTGACC +
Preference number: 5 (lower is better)
Translates to: SWPGCDSFPETGDIPYLSPCGNN*HGPHLT
Trigger: GGTCAGGTGGGGCCCATGCAAGTTATTACCACAAGG...TGAGAGGTAAGGAATGTCACCAGTCTCAGGAAAGCTGTCACACCCAGGCCATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CAA 90 bp GAAAGGGTACAGCGCTGGACCCCACACGGGAACCAGCAGGAAGGAGCTTGGGAGTCGTATCTTGTAGCCTaGTATTTGCCTCAAACTCTA +
Preference number: 5 (lower is better)
Translates to: ERVQRWTPHGNQQEGAWESYLVA*YLPQTL
Trigger: TAGAGTTTGAGGCAAATACAAGGCTACAAGATACGA...CTCCCAAGCTCCTTCCTGCTGGTTCCCGTGTGGGGTCCAGCGCTGTACCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CAA 90 bp ATGGGAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTCTGCTCAGAACCTTGTaGACAACCAGCTTCACGCCT +
Preference number: 5 (lower is better)
Translates to: MGDYSGADGSIGNLNPLPLLRTL*TTSFTP
Trigger: AGGCGTGAAGCTGGTTGTCAACAAGGTTCTGAGCAG...AGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CAA 90 bp TGGGAGATTATAGTGGGGCTGATGGCAGTATTGGGAACCTCAACCCGCTACCTATGGCTGCTCAGAACCTaGTTGACAACCAGCTTCACG +
Preference number: 5 (lower is better)
Translates to: WEIIVGLMAVLGTSTRYLWLLRT*LTTSFT
Trigger: CGTGAAGCTGGTTGTCAACAAGGTTCTGAGCAGCCA...TAGGTAGCGGGTTGAGGTTCCCAATACTGCCATCAGCCCCACTATAATCTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CAA 90 bp TCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCGAGGGAAGGAGCCTTGTGGTAATAACTaGCATGGGCCCCACCTGACC +
Preference number: 5 (lower is better)
Translates to: SFCGQRFNSLILPSRGKEPCGNN*HGPHLT
Trigger: GGTCAGGTGGGGCCCATGCAAGTTATTACCACAAGG...CTCCTTCCCTCGGGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CAA 90 bp TCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCCCTTCCCGAGGGAAGGAGTGCCATGTCAGGAACTaGGCCTGCTGTGTCTCTGTG +
Preference number: 5 (lower is better)
Translates to: SFCGQRFNSLILPSRGKECHVRN*ACCVSV
Trigger: CACAGAGACACAGCAGGCCAAGTTCCTGACATGGCA...CTCCTTCCCTCGGGAAGGGAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111326.8
CDS-3UTR CAA 90 bp GAGACTGGTGACATTCCTTACCTCTCACCTCTCCGACTTTTCCAAACTAAAGTCCTGCTCAGAACCTTGTaGACAACCAGCTTCACGCCT +
Preference number: 5 (lower is better)
Translates to: ETGDIPYLSPLRLFQTKVLLRTL*TTSFTP
Trigger: AGGCGTGAAGCTGGTTGTCAACAAGGTTCTGAGCAG...GACTTTAGTTTGGAAAAGTCGGAGAGGTGAGAGGTAAGGAATGTCACCAGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CAA 90 bp AAAACTAGGCACAATGAAGGAACAGTGTTGATAGAGGCCCTTCTTGGGTATGTCTGGCTGCTCAGAACCTaGTTGACAACCAGCTTCACG +
Preference number: 5 (lower is better)
Translates to: KTRHNEGTVLIEALLGYVWLLRT*LTTSFT
Trigger: CGTGAAGCTGGTTGTCAACAAGGTTCTGAGCAGCCA...GACATACCCAAGAAGGGCCTCTATCAACACTGTTCCTTCATTGTGCCTAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS-3UTR CAA 90 bp GGTGGGCCCATTCTTTGGTCTTTCTGTGGCCAGAGATTTAACTCTTTAATCCTCTCGTATCTTGTAGCCTaGTATTTGCCTCAAACTCTA +
Preference number: 5 (lower is better)
Translates to: GGPILWSFCGQRFNSLILSYLVA*YLPQTL
Trigger: TAGAGTTTGAGGCAAATACAAGGCTACAAGATACGA...GAGGATTAAAGAGTTAAATCTCTGGCCACAGAAAGACCAAAGAATGGGCCCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
CDS CCA 72 bp TGCACAACCGGTGCAGCTCGTCGAAGCTCCCGGGGTTaGGCAGCGGTTCCTCTCGACGGTGGCTCCGGCGGG +
Preference number: 6 (lower is better)
Translates to: CTTGAARRSSRG*AAVPLDGGSGG
Trigger: CCCGCCGGAGCCACCGTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000143405.2
ENSMUST00000147246.2
CDS CAA 72 bp TTGCACAACCGGTGCAGCTCGTCGAAGCTCCCGGGGTaGGGCAGCGGTTCCTCTCGACGGTGGCTCCGGCGG +
Preference number: 6 (lower is better)
Translates to: LHNRCSSSKLPG*GSGSSRRWLRR
Trigger: CCGCCGGAGCCACCGTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000143405.2
ENSMUST00000147246.2
CDS CCA 72 bp AAGCTCCCGGGGTTGGGCAGCGGTTCCTCTCGACGGTaGCTCCGGCGGGGTAAAGTACCCATCGGTGCCAGG +
Preference number: 6 (lower is better)
Translates to: KLPGLGSGSSRR*LRRGKVPIGAR
Trigger: CCTGGCACCGATGGGTACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000143405.2
ENSMUST00000147246.2
CDS CAA 90 bp GCTGTGTCTTTGCACAACCGGTGCAGCTCGTCGAAGCTCCCGGGGTaGGGCAGCGGTTCCTCTCGACGGTGGCTCCGGCGGGGTAAAGTA +
Preference number: 6 (lower is better)
Translates to: AVSLHNRCSSSKLPG*GSGSSRRWLRRGKV
Trigger: TACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGACACAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
CDS GCA 72 bp CTGCTGTGTCTCTGTGGGGCTAAGCTGCCAGTCCCCTaGATAGGCGGTATGGAGGTGGTACCCTGGCAAGCC +
Preference number: 6 (lower is better)
Translates to: LLCLCGAKLPVP*IGGMEVVPWQA
Trigger: GGCTTGCCAGGGTACCACCTCCATACCGCCTATGCAGGGGACTGGCAGCTTAGCCCCACAGAGACACAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111326.8
CDS GCA 72 bp TCAGGAACTTGGCCTGCTGTGTCTTTGCACAACCGGTaGAGCTCGTCGAAGCTCCCGGGGTTGGGCAGCGGT +
Preference number: 6 (lower is better)
Translates to: SGTWPAVSLHNR*SSSKLPGLGSG
Trigger: ACCGCTGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGACACAGCAGGCCAAGTTCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143405.2
CDS CAA 90 bp AATACATCTTTGCACAACCGGTGCAGCTCGTCGAAGCTCCCGGGGTaGGGCAGCGGTTCCTCTCGACGGTGGCTCCGGCGGGGTAAAGTA +
Preference number: 6 (lower is better)
Translates to: NTSLHNRCSSSKLPG*GSGSSRRWLRRGKV
Trigger: TACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACCGCTGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGATGTATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000147246.2
CDS CCA 72 bp CCAGTCCCCTGCATAGGCGGTATGGAGGTGGTACCCTaGCAAGCCCAGGGCACTCATGTGCACAGTATGAGC +
Preference number: 6 (lower is better)
Translates to: PVPCIGGMEVVP*QAQGTHVHSMS
Trigger: GCTCATACTGTGCACATGAGTGCCCTGGGCTTGCCAGGGTACCACCTCCATACCGCCTATGCAGGGGACTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000147246.2
CDS GCA 72 bp TCCATCTGTGCTGGGAATACATCTTTGCACAACCGGTaGAGCTCGTCGAAGCTCCCGGGGTTGGGCAGCGGT +
Preference number: 6 (lower is better)
Translates to: SICAGNTSLHNR*SSSKLPGLGSG
Trigger: ACCGCTGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGATGTATTCCCAGCACAGATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000147246.2
CDS GCA 72 bp TACTCGCCATCAAACTGCCATGTCAGGAACTTGGCCTaGTGTGTCTCTGTGGGGCTAAGCTGCCAGTCCCCT +
Preference number: 6 (lower is better)
Translates to: YSPSNCHVRNLA*CVSVGLSCQSP
Trigger: AGGGGACTGGCAGCTTAGCCCCACAGAGACACAGCAGGCCAAGTTCCTGACATGGCAGTTTGATGGCGAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111326.8
CDS CCA 72 bp CTTGTTGACAACCAGCTTCACGCCTTCCATCTGTGCTaGGAATACATCTTTGCACAACCGGTGCAGCTCGTC +
Preference number: 6 (lower is better)
Translates to: LVDNQLHAFHLC*EYIFAQPVQLV
Trigger: GACGAGCTGCACCGGTTGTGCAAAGATGTATTCCCAGCACAGATGGAAGGCGTGAAGCTGGTTGTCAACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000147246.2
CDS GCA 72 bp AACCTTGTTGACAACCAGCTTCACGCCTTCCATCTGTaGTGGGAATACATCTTTGCACAACCGGTGCAGCTC +
Preference number: 6 (lower is better)
Translates to: NLVDNQLHAFHL*WEYIFAQPVQL
Trigger: GAGCTGCACCGGTTGTGCAAAGATGTATTCCCAGCACAGATGGAAGGCGTGAAGCTGGTTGTCAACAAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005817.9
ENSMUST00000111326.8
ENSMUST00000111327.8
ENSMUST00000138184.8
ENSMUST00000147246.2