Pregenerated sensors for TOMM20L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021078Ensembl transcript IDs: ENSMUST00000021482.6, ENSMUST00000220834.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | CGTGTGGATGCGCTGGGATGTTTTCAGTCGGGGTCATCCTTCAAGTaGTCCGTGCTCCTGCATGTCTCCTCGAGTTGCTGGCAAATGAGG | + |
Preference number: 1 (lower is better) Translates to: RVDALGCFQSGSSFK*SVLLHVSSSCWQMR Trigger: CCTCATTTGCCAGCAACTCGAGGAGACATGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACATCCCAGCGCATCCACACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR TCA 90 bp | TCAAGTGCTCCGTGCTCCTGCATGTCTCCTCGAGTTGCTGGCAAATaGGGGGAATCTTGTCCAATAGCATCTGAAAAACCTCAGGAGGGA | + |
Preference number: 1 (lower is better) Translates to: SSAPCSCMSPRVAGK*GESCPIASEKPQEG Trigger: TCCCTCCTGAGGTTTTTCAGATGCTATTGGACAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGACATGCAGGAGCACGGAGCACTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR CCA 90 bp | ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTaGGCATTCCCACTGCGTGTGGATGCGCTGGGATGTTTTCAGTCG | + |
Preference number: 1 (lower is better) Translates to: MSIIEQLSLLYRTRQ*AFPLRVDALGCFQS Trigger: CGACTGAAAACATCCCAGCGCATCCACACGCAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR-3UTR CCA 90 bp | ATGCGCTGGGATGTTTTCAGTCGGGGTCATCCTTCAAGTGCTCCGTGCTCCTGCTATAGAACACGGCAGTaGGCATTCCCACTGCGTGTG | + |
Preference number: 2 (lower is better) Translates to: MRWDVFSRGHPSSAPCSCYRTRQ*AFPLRV Trigger: CACACGCAGTGGGAATGCCCACTGCCGTGTTCTATA...GCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACATCCCAGCGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR-3UTR TCA 90 bp | ATGTTTTCAGTCGGGGTCATCCTTCAAGTGCTCCGTGCTCCTGCATGTCTCCTCTTGTCCAATAGCATCTaGAAAACCTCAGGAGGGAGT | + |
Preference number: 2 (lower is better) Translates to: MFSVGVILQVLRAPACLLLSNSI*KTSGGS Trigger: ACTCCCTCCTGAGGTTTTTCAGATGCTATTGGACAA...GAGGAGACATGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR-3UTR GCA 90 bp | GTTTTCAGTCGGGGTCATCCTTCAAGTGCTCCGTGCTCCTGCATGTCTCCTCGAAGAAGCTCCTTTGGTTaGTCACATACTAAAAGGGCA | + |
Preference number: 2 (lower is better) Translates to: VFSRGHPSSAPCSCMSPRRSSFG*SHTKRA Trigger: TGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCT...TCGAGGAGACATGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR GCA 72 bp | GCGCTGGGATGTTTTCAGTCGGGGTCATCCTTCAAGTaGTCCGTGCTCCTGCATGTCTCCTCGAGTTGCTGG | + |
Preference number: 3 (lower is better) Translates to: ALGCFQSGSSFK*SVLLHVSSSCW Trigger: CCAGCAACTCGAGGAGACATGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACATCCCAGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR CCA 72 bp | TGTATAGAACACGGCAGTGGGCATTCCCACTGCGTGTaGATGCGCTGGGATGTTTTCAGTCGGGGTCATCCT | + |
Preference number: 3 (lower is better) Translates to: CIEHGSGHSHCV*MRWDVFSRGHP Trigger: AGGATGACCCCGACTGAAAACATCCCAGCGCATCCACACGCAGTGGGAATGCCCACTGCCGTGTTCTATACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR GCA 72 bp | TTCAAGTGCTCCGTGCTCCTGCATGTCTCCTCGAGTTaGTGGCAAATGAGGGGAATCTTGTCCAATAGCATC | + |
Preference number: 3 (lower is better) Translates to: FKCSVLLHVSSS*WQMRGILSNSI Trigger: GATGCTATTGGACAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGACATGCAGGAGCACGGAGCACTTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR CCA 72 bp | ATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTaGGCATTCCCACTGCGTGTGGATGCGCTGGGATGT | + |
Preference number: 3 (lower is better) Translates to: IEQLSLLYRTRQ*AFPLRVDALGC Trigger: ACATCCCAGCGCATCCACACGCAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021482.6 ENSMUST00000220834.2 |
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3UTR-3UTR CAA 90 bp | TGCGCTGGGATGTTTTCAGTCGGGGTCATCCTTCAAGTGCTCCGTGCTCCTGCAACATCAGAAGCTCCTTaGGTTGCTCACATACTAAAA | + |
Preference number: 3 (lower is better) Translates to: CAGMFSVGVILQVLRAPATSEAP*VAHILK Trigger: TTTTAGTATGTGAGCAACCAAAGGAGCTTCTGATGT...TGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACATCCCAGCGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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3UTR TCA 72 bp | CCGTGCTCCTGCATGTCTCCTCGAGTTGCTGGCAAATaGGGGGAATCTTGTCCAATAGCATCTGAAAAACCT | + |
Preference number: 3 (lower is better) Translates to: PCSCMSPRVAGK*GESCPIASEKP Trigger: AGGTTTTTCAGATGCTATTGGACAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGACATGCAGGAGCACGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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CDS-3UTR CCA 90 bp | ATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCCACTGTGCCTGGCGGGCGCCTaGGCCTTGGGCTGTCCAGCT | + |
Preference number: 4 (lower is better) Translates to: IIEQLSLLYRTRQWAFPLCLAGA*ALGCPA Trigger: AGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCA...CAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS-3UTR CCA 90 bp | ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCGGGCGCCTGGGCCTTaGGCTGTCCAGCTCTTCTCT | + |
Preference number: 4 (lower is better) Translates to: MSIIEQLSLLYRTRQWAFRAPGP*AVQLFS Trigger: AGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCG...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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3UTR CAA 72 bp | AGAAGCTCCTTTGGTTGCTCACATACTAAAAGGGCATaGGTGAGATGCTCAAAGCCCATTCCGCGCTCCCCT | + |
Preference number: 4 (lower is better) Translates to: RSSFGCSHTKRA*VRCSKPIPRSP Trigger: AGGGGAGCGCGGAATGGGCTTTGAGCATCTCACCAATGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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CDS-3UTR TCA 90 bp | ATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCCACTGCGTTTGTCCAATAGCATCTaGAAAACCTCAGGAGGGAGT | + |
Preference number: 4 (lower is better) Translates to: IEQLSLLYRTRQWAFPLRLSNSI*KTSGGS Trigger: ACTCCCTCCTGAGGTTTTTCAGATGCTATTGGACAA...ACGCAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS-3UTR GCA 90 bp | ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCATGTCTCCTCGAGTTaGTGGCAAATGAGGGGAATC | + |
Preference number: 4 (lower is better) Translates to: MSIIEQLSLLYRTRQWAFHVSSS*WQMRGI Trigger: GATTCCCCTCATTTGCCAGCAACTCGAGGAGACATG...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS-3UTR CCA 90 bp | ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCGTCTCCTCGAGTTGCTaGCAAATGAGGGGAATCTTG | + |
Preference number: 4 (lower is better) Translates to: MSIIEQLSLLYRTRQWAFVSSSC*QMRGIL Trigger: CAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGAC...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS-3UTR GCA 90 bp | ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCAGAAGCTCCTTTGGTTaGTCACATACTAAAAGGGCA | + |
Preference number: 4 (lower is better) Translates to: MSIIEQLSLLYRTRQWAFRSSFG*SHTKRA Trigger: TGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCT...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS GCA 90 bp | CTGGCGGGCGCCTGGGCCTTGGGCTGTCCAGCTCTTCTCTTGTCCTaGAGGCGGCGGCGGAATGCGGGGTCTCGGTGCCGCCTCCAGTCC | + |
Preference number: 5 (lower is better) Translates to: LAGAWALGCPALLLS*RRRRNAGSRCRLQS Trigger: GGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS TCA 90 bp | ATGCGGGGTCTCGGTGCCGCCTCCAGTCCAGGTAGACGCAGTAGCTaGGTAGGACGACCGCGCCGCCCGCTGCCAAGCCCGCCAGGAGAC | + |
Preference number: 5 (lower is better) Translates to: MRGLGAASSPGRRSS*VGRPRRPLPSPPGD Trigger: GTCTCCTGGCGGGCTTGGCAGCGGGCGGCGCGGTCGTCCTACTCAGCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCAT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021482.6 ENSMUST00000220834.2 |
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CDS GCA 90 bp | CTTGGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGCGGCGGAATaGGGGGTCTCGGTGCCGCCTCCAGTCCAGGTAGACGCAGTAGCT | + |
Preference number: 5 (lower is better) Translates to: LGLSSSSLVLQAAAE*GVSVPPPVQVDAVA Trigger: AGCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS CCA 90 bp | CCTTCTTTACTGGATCCCATAACTGCCTGGCGGGCGCCTGGGCCTTaGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGCGGCGGAATG | + |
Preference number: 5 (lower is better) Translates to: PSLLDPITAWRAPGP*AVQLFSCPAGGGGM Trigger: CATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS GCA 90 bp | TCCTTCTTTACTGGATCCCATAATGTCCTGCAGGCGGCGGCGGAATaGGGGGTCTCGGTGCCGCCTCCAGTCCAGGTAGACGCAGTAGCT | + |
Preference number: 5 (lower is better) Translates to: SFFTGSHNVLQAAAE*GVSVPPPVQVDAVA Trigger: AGCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACATTATGGGATCCAGTAAAGAAGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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CDS CCA 90 bp | AGTTCTTCCTTCTTTACTGGATCCCATAACTGCCTGGCGGGCGCCTaGGCCTTGGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGCGG | + |
Preference number: 5 (lower is better) Translates to: SSSFFTGSHNCLAGA*ALGCPALLLSCRRR Trigger: CCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAAGGAAGAACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS-3UTR CAA 90 bp | ATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCCACTGGCGGGCGCCTGGGCCTaGGGCTGTCCAGCTCTTCTC | + |
Preference number: 5 (lower is better) Translates to: IIEQLSLLYRTRQWAFPLAGAWA*GCPALL Trigger: GAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGC...CAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS-3UTR CAA 90 bp | ATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCCACTGTGTCCAGCTCTTCTCTaGTCCTGCAGGCGGCGGCGG | + |
Preference number: 5 (lower is better) Translates to: IIEQLSLLYRTRQWAFPLCPALL*SCRRRR Trigger: CCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACA...CAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS GCA 90 bp | AGAAGCTCCTTTGGTTGCTCACATACTAAAAGGGCATTGGTGAGATaGTCAAAGCCCATTCCGCGCTCCCCTCTAATTAAACAAAGTTTT | + |
Preference number: 5 (lower is better) Translates to: RSSFGCSHTKRALVR*SKPIPRSPLIKQSF Trigger: AAAACTTTGTTTAATTAGAGGGGAGCGCGGAATGGGCTTTGAGCATCTCACCAATGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS-3UTR CAA 90 bp | ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCACATCAGAAGCTCCTTaGGTTGCTCACATACTAAAA | + |
Preference number: 5 (lower is better) Translates to: MSIIEQLSLLYRTRQWAFTSEAP*VAHILK Trigger: TTTTAGTATGTGAGCAACCAAAGGAGCTTCTGATGT...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS CAA 72 bp | GCGGGCGCCTGGGCCTTGGGCTGTCCAGCTCTTCTCTaGTCCTGCAGGCGGCGGCGGAATGCGGGGTCTCGG | + |
Preference number: 6 (lower is better) Translates to: AGAWALGCPALL*SCRRRRNAGSR Trigger: CCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS CAA 90 bp | AACTGCCTGGCGGGCGCCTGGGCCTTGGGCTGTCCAGCTCTTCTCTaGTCCTGCAGGCGGCGGCGGAATGCGGGGTCTCGGTGCCGCCTC | + |
Preference number: 6 (lower is better) Translates to: NCLAGAWALGCPALL*SCRRRRNAGSRCRL Trigger: GAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS TCA 72 bp | CTCGGTGCCGCCTCCAGTCCAGGTAGACGCAGTAGCTaGGTAGGACGACCGCGCCGCCCGCTGCCAAGCCCG | + |
Preference number: 6 (lower is better) Translates to: LGAASSPGRRSS*VGRPRRPLPSP Trigger: CGGGCTTGGCAGCGGGCGGCGCGGTCGTCCTACTCAGCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021482.6 ENSMUST00000220834.2 |
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CDS GCA 72 bp | GCCTGGGCCTTGGGCTGTCCAGCTCTTCTCTTGTCCTaGAGGCGGCGGCGGAATGCGGGGTCTCGGTGCCGC | + |
Preference number: 6 (lower is better) Translates to: AWALGCPALLLS*RRRRNAGSRCR Trigger: GCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS GCA 72 bp | TCCAGCTCTTCTCTTGTCCTGCAGGCGGCGGCGGAATaGGGGGTCTCGGTGCCGCCTCCAGTCCAGGTAGAC | + |
Preference number: 6 (lower is better) Translates to: SSSSLVLQAAAE*GVSVPPPVQVD Trigger: GTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS CCA 72 bp | CTGGATCCCATAACTGCCTGGCGGGCGCCTGGGCCTTaGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGC | + |
Preference number: 6 (lower is better) Translates to: LDPITAWRAPGP*AVQLFSCPAGG Trigger: GCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS CAA 72 bp | ACTGGATCCCATAACTGCCTGGCGGGCGCCTGGGCCTaGGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGG | + |
Preference number: 6 (lower is better) Translates to: TGSHNCLAGAWA*GCPALLLSCRR Trigger: CCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS CAA 90 bp | TCCTTCTTTACTGGATCCCATAACTGCCTGGCGGGCGCCTGGGCCTaGGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGCGGCGGAAT | + |
Preference number: 6 (lower is better) Translates to: SFFTGSHNCLAGAWA*GCPALLLSCRRRRN Trigger: ATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS GCA 72 bp | GTAGTTCTTCCTTCTTTACTGGATCCCATAATGTCCTaGAGGCGGCGGCGGAATGCGGGGTCTCGGTGCCGC | + |
Preference number: 6 (lower is better) Translates to: VVLPSLLDPIMS*RRRRNAGSRCR Trigger: GCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACATTATGGGATCCAGTAAAGAAGGAAGAACTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220834.2 |
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CDS CCA 72 bp | TTCTTTACTGGATCCCATAACTGCCTGGCGGGCGCCTaGGCCTTGGGCTGTCCAGCTCTTCTCTTGTCCTGC | + |
Preference number: 6 (lower is better) Translates to: FFTGSHNCLAGA*ALGCPALLLSC Trigger: GCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |
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CDS GCA 72 bp | TTTGGTTGCTCACATACTAAAAGGGCATTGGTGAGATaGTCAAAGCCCATTCCGCGCTCCCCTCTAATTAAA | + |
Preference number: 6 (lower is better) Translates to: FGCSHTKRALVR*SKPIPRSPLIK Trigger: TTTAATTAGAGGGGAGCGCGGAATGGGCTTTGAGCATCTCACCAATGCCCTTTTAGTATGTGAGCAACCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021482.6 |