RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TOMM20L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021078

Ensembl transcript IDs: ENSMUST00000021482.6, ENSMUST00000220834.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGTGTGGATGCGCTGGGATGTTTTCAGTCGGGGTCATCCTTCAAGTaGTCCGTGCTCCTGCATGTCTCCTCGAGTTGCTGGCAAATGAGG +
Preference number: 1 (lower is better)
Translates to: RVDALGCFQSGSSFK*SVLLHVSSSCWQMR
Trigger: CCTCATTTGCCAGCAACTCGAGGAGACATGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACATCCCAGCGCATCCACACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR TCA 90 bp TCAAGTGCTCCGTGCTCCTGCATGTCTCCTCGAGTTGCTGGCAAATaGGGGGAATCTTGTCCAATAGCATCTGAAAAACCTCAGGAGGGA +
Preference number: 1 (lower is better)
Translates to: SSAPCSCMSPRVAGK*GESCPIASEKPQEG
Trigger: TCCCTCCTGAGGTTTTTCAGATGCTATTGGACAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGACATGCAGGAGCACGGAGCACTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR CCA 90 bp ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTaGGCATTCCCACTGCGTGTGGATGCGCTGGGATGTTTTCAGTCG +
Preference number: 1 (lower is better)
Translates to: MSIIEQLSLLYRTRQ*AFPLRVDALGCFQS
Trigger: CGACTGAAAACATCCCAGCGCATCCACACGCAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR-3UTR CCA 90 bp ATGCGCTGGGATGTTTTCAGTCGGGGTCATCCTTCAAGTGCTCCGTGCTCCTGCTATAGAACACGGCAGTaGGCATTCCCACTGCGTGTG +
Preference number: 2 (lower is better)
Translates to: MRWDVFSRGHPSSAPCSCYRTRQ*AFPLRV
Trigger: CACACGCAGTGGGAATGCCCACTGCCGTGTTCTATA...GCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACATCCCAGCGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR-3UTR TCA 90 bp ATGTTTTCAGTCGGGGTCATCCTTCAAGTGCTCCGTGCTCCTGCATGTCTCCTCTTGTCCAATAGCATCTaGAAAACCTCAGGAGGGAGT +
Preference number: 2 (lower is better)
Translates to: MFSVGVILQVLRAPACLLLSNSI*KTSGGS
Trigger: ACTCCCTCCTGAGGTTTTTCAGATGCTATTGGACAA...GAGGAGACATGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR-3UTR GCA 90 bp GTTTTCAGTCGGGGTCATCCTTCAAGTGCTCCGTGCTCCTGCATGTCTCCTCGAAGAAGCTCCTTTGGTTaGTCACATACTAAAAGGGCA +
Preference number: 2 (lower is better)
Translates to: VFSRGHPSSAPCSCMSPRRSSFG*SHTKRA
Trigger: TGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCT...TCGAGGAGACATGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR GCA 72 bp GCGCTGGGATGTTTTCAGTCGGGGTCATCCTTCAAGTaGTCCGTGCTCCTGCATGTCTCCTCGAGTTGCTGG +
Preference number: 3 (lower is better)
Translates to: ALGCFQSGSSFK*SVLLHVSSSCW
Trigger: CCAGCAACTCGAGGAGACATGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACATCCCAGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR CCA 72 bp TGTATAGAACACGGCAGTGGGCATTCCCACTGCGTGTaGATGCGCTGGGATGTTTTCAGTCGGGGTCATCCT +
Preference number: 3 (lower is better)
Translates to: CIEHGSGHSHCV*MRWDVFSRGHP
Trigger: AGGATGACCCCGACTGAAAACATCCCAGCGCATCCACACGCAGTGGGAATGCCCACTGCCGTGTTCTATACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR GCA 72 bp TTCAAGTGCTCCGTGCTCCTGCATGTCTCCTCGAGTTaGTGGCAAATGAGGGGAATCTTGTCCAATAGCATC +
Preference number: 3 (lower is better)
Translates to: FKCSVLLHVSSS*WQMRGILSNSI
Trigger: GATGCTATTGGACAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGACATGCAGGAGCACGGAGCACTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR CCA 72 bp ATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTaGGCATTCCCACTGCGTGTGGATGCGCTGGGATGT +
Preference number: 3 (lower is better)
Translates to: IEQLSLLYRTRQ*AFPLRVDALGC
Trigger: ACATCCCAGCGCATCCACACGCAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021482.6
ENSMUST00000220834.2
3UTR-3UTR CAA 90 bp TGCGCTGGGATGTTTTCAGTCGGGGTCATCCTTCAAGTGCTCCGTGCTCCTGCAACATCAGAAGCTCCTTaGGTTGCTCACATACTAAAA +
Preference number: 3 (lower is better)
Translates to: CAGMFSVGVILQVLRAPATSEAP*VAHILK
Trigger: TTTTAGTATGTGAGCAACCAAAGGAGCTTCTGATGT...TGCAGGAGCACGGAGCACTTGAAGGATGACCCCGACTGAAAACATCCCAGCGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
3UTR TCA 72 bp CCGTGCTCCTGCATGTCTCCTCGAGTTGCTGGCAAATaGGGGGAATCTTGTCCAATAGCATCTGAAAAACCT +
Preference number: 3 (lower is better)
Translates to: PCSCMSPRVAGK*GESCPIASEKP
Trigger: AGGTTTTTCAGATGCTATTGGACAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGACATGCAGGAGCACGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
CDS-3UTR CCA 90 bp ATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCCACTGTGCCTGGCGGGCGCCTaGGCCTTGGGCTGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: IIEQLSLLYRTRQWAFPLCLAGA*ALGCPA
Trigger: AGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCA...CAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS-3UTR CCA 90 bp ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCGGGCGCCTGGGCCTTaGGCTGTCCAGCTCTTCTCT +
Preference number: 4 (lower is better)
Translates to: MSIIEQLSLLYRTRQWAFRAPGP*AVQLFS
Trigger: AGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCG...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
3UTR CAA 72 bp AGAAGCTCCTTTGGTTGCTCACATACTAAAAGGGCATaGGTGAGATGCTCAAAGCCCATTCCGCGCTCCCCT +
Preference number: 4 (lower is better)
Translates to: RSSFGCSHTKRA*VRCSKPIPRSP
Trigger: AGGGGAGCGCGGAATGGGCTTTGAGCATCTCACCAATGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
CDS-3UTR TCA 90 bp ATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCCACTGCGTTTGTCCAATAGCATCTaGAAAACCTCAGGAGGGAGT +
Preference number: 4 (lower is better)
Translates to: IEQLSLLYRTRQWAFPLRLSNSI*KTSGGS
Trigger: ACTCCCTCCTGAGGTTTTTCAGATGCTATTGGACAA...ACGCAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS-3UTR GCA 90 bp ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCATGTCTCCTCGAGTTaGTGGCAAATGAGGGGAATC +
Preference number: 4 (lower is better)
Translates to: MSIIEQLSLLYRTRQWAFHVSSS*WQMRGI
Trigger: GATTCCCCTCATTTGCCAGCAACTCGAGGAGACATG...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS-3UTR CCA 90 bp ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCGTCTCCTCGAGTTGCTaGCAAATGAGGGGAATCTTG +
Preference number: 4 (lower is better)
Translates to: MSIIEQLSLLYRTRQWAFVSSSC*QMRGIL
Trigger: CAAGATTCCCCTCATTTGCCAGCAACTCGAGGAGAC...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS-3UTR GCA 90 bp ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCAGAAGCTCCTTTGGTTaGTCACATACTAAAAGGGCA +
Preference number: 4 (lower is better)
Translates to: MSIIEQLSLLYRTRQWAFRSSFG*SHTKRA
Trigger: TGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCT...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS GCA 90 bp CTGGCGGGCGCCTGGGCCTTGGGCTGTCCAGCTCTTCTCTTGTCCTaGAGGCGGCGGCGGAATGCGGGGTCTCGGTGCCGCCTCCAGTCC +
Preference number: 5 (lower is better)
Translates to: LAGAWALGCPALLLS*RRRRNAGSRCRLQS
Trigger: GGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS TCA 90 bp ATGCGGGGTCTCGGTGCCGCCTCCAGTCCAGGTAGACGCAGTAGCTaGGTAGGACGACCGCGCCGCCCGCTGCCAAGCCCGCCAGGAGAC +
Preference number: 5 (lower is better)
Translates to: MRGLGAASSPGRRSS*VGRPRRPLPSPPGD
Trigger: GTCTCCTGGCGGGCTTGGCAGCGGGCGGCGCGGTCGTCCTACTCAGCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCAT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021482.6
ENSMUST00000220834.2
CDS GCA 90 bp CTTGGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGCGGCGGAATaGGGGGTCTCGGTGCCGCCTCCAGTCCAGGTAGACGCAGTAGCT +
Preference number: 5 (lower is better)
Translates to: LGLSSSSLVLQAAAE*GVSVPPPVQVDAVA
Trigger: AGCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS CCA 90 bp CCTTCTTTACTGGATCCCATAACTGCCTGGCGGGCGCCTGGGCCTTaGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGCGGCGGAATG +
Preference number: 5 (lower is better)
Translates to: PSLLDPITAWRAPGP*AVQLFSCPAGGGGM
Trigger: CATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS GCA 90 bp TCCTTCTTTACTGGATCCCATAATGTCCTGCAGGCGGCGGCGGAATaGGGGGTCTCGGTGCCGCCTCCAGTCCAGGTAGACGCAGTAGCT +
Preference number: 5 (lower is better)
Translates to: SFFTGSHNVLQAAAE*GVSVPPPVQVDAVA
Trigger: AGCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACATTATGGGATCCAGTAAAGAAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
CDS CCA 90 bp AGTTCTTCCTTCTTTACTGGATCCCATAACTGCCTGGCGGGCGCCTaGGCCTTGGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGCGG +
Preference number: 5 (lower is better)
Translates to: SSSFFTGSHNCLAGA*ALGCPALLLSCRRR
Trigger: CCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAAGGAAGAACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS-3UTR CAA 90 bp ATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCCACTGGCGGGCGCCTGGGCCTaGGGCTGTCCAGCTCTTCTC +
Preference number: 5 (lower is better)
Translates to: IIEQLSLLYRTRQWAFPLAGAWA*GCPALL
Trigger: GAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGC...CAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS-3UTR CAA 90 bp ATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCCCACTGTGTCCAGCTCTTCTCTaGTCCTGCAGGCGGCGGCGG +
Preference number: 5 (lower is better)
Translates to: IIEQLSLLYRTRQWAFPLCPALL*SCRRRR
Trigger: CCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACA...CAGTGGGAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS GCA 90 bp AGAAGCTCCTTTGGTTGCTCACATACTAAAAGGGCATTGGTGAGATaGTCAAAGCCCATTCCGCGCTCCCCTCTAATTAAACAAAGTTTT +
Preference number: 5 (lower is better)
Translates to: RSSFGCSHTKRALVR*SKPIPRSPLIKQSF
Trigger: AAAACTTTGTTTAATTAGAGGGGAGCGCGGAATGGGCTTTGAGCATCTCACCAATGCCCTTTTAGTATGTGAGCAACCAAAGGAGCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS-3UTR CAA 90 bp ATGAGTATCATTGAGCAGTTGTCTTTACTGTATAGAACACGGCAGTGGGCATTCACATCAGAAGCTCCTTaGGTTGCTCACATACTAAAA +
Preference number: 5 (lower is better)
Translates to: MSIIEQLSLLYRTRQWAFTSEAP*VAHILK
Trigger: TTTTAGTATGTGAGCAACCAAAGGAGCTTCTGATGT...GAATGCCCACTGCCGTGTTCTATACAGTAAAGACAACTGCTCAATGATACTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS CAA 72 bp GCGGGCGCCTGGGCCTTGGGCTGTCCAGCTCTTCTCTaGTCCTGCAGGCGGCGGCGGAATGCGGGGTCTCGG +
Preference number: 6 (lower is better)
Translates to: AGAWALGCPALL*SCRRRRNAGSR
Trigger: CCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS CAA 90 bp AACTGCCTGGCGGGCGCCTGGGCCTTGGGCTGTCCAGCTCTTCTCTaGTCCTGCAGGCGGCGGCGGAATGCGGGGTCTCGGTGCCGCCTC +
Preference number: 6 (lower is better)
Translates to: NCLAGAWALGCPALL*SCRRRRNAGSRCRL
Trigger: GAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS TCA 72 bp CTCGGTGCCGCCTCCAGTCCAGGTAGACGCAGTAGCTaGGTAGGACGACCGCGCCGCCCGCTGCCAAGCCCG +
Preference number: 6 (lower is better)
Translates to: LGAASSPGRRSS*VGRPRRPLPSP
Trigger: CGGGCTTGGCAGCGGGCGGCGCGGTCGTCCTACTCAGCTACTGCGTCTACCTGGACTGGAGGCGGCACCGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021482.6
ENSMUST00000220834.2
CDS GCA 72 bp GCCTGGGCCTTGGGCTGTCCAGCTCTTCTCTTGTCCTaGAGGCGGCGGCGGAATGCGGGGTCTCGGTGCCGC +
Preference number: 6 (lower is better)
Translates to: AWALGCPALLLS*RRRRNAGSRCR
Trigger: GCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS GCA 72 bp TCCAGCTCTTCTCTTGTCCTGCAGGCGGCGGCGGAATaGGGGGTCTCGGTGCCGCCTCCAGTCCAGGTAGAC +
Preference number: 6 (lower is better)
Translates to: SSSSLVLQAAAE*GVSVPPPVQVD
Trigger: GTCTACCTGGACTGGAGGCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS CCA 72 bp CTGGATCCCATAACTGCCTGGCGGGCGCCTGGGCCTTaGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGC +
Preference number: 6 (lower is better)
Translates to: LDPITAWRAPGP*AVQLFSCPAGG
Trigger: GCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS CAA 72 bp ACTGGATCCCATAACTGCCTGGCGGGCGCCTGGGCCTaGGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGG +
Preference number: 6 (lower is better)
Translates to: TGSHNCLAGAWA*GCPALLLSCRR
Trigger: CCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS CAA 90 bp TCCTTCTTTACTGGATCCCATAACTGCCTGGCGGGCGCCTGGGCCTaGGGCTGTCCAGCTCTTCTCTTGTCCTGCAGGCGGCGGCGGAAT +
Preference number: 6 (lower is better)
Translates to: SFFTGSHNCLAGAWA*GCPALLLSCRRRRN
Trigger: ATTCCGCCGCCGCCTGCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS GCA 72 bp GTAGTTCTTCCTTCTTTACTGGATCCCATAATGTCCTaGAGGCGGCGGCGGAATGCGGGGTCTCGGTGCCGC +
Preference number: 6 (lower is better)
Translates to: VVLPSLLDPIMS*RRRRNAGSRCR
Trigger: GCGGCACCGAGACCCCGCATTCCGCCGCCGCCTGCAGGACATTATGGGATCCAGTAAAGAAGGAAGAACTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220834.2
CDS CCA 72 bp TTCTTTACTGGATCCCATAACTGCCTGGCGGGCGCCTaGGCCTTGGGCTGTCCAGCTCTTCTCTTGTCCTGC +
Preference number: 6 (lower is better)
Translates to: FFTGSHNCLAGA*ALGCPALLLSC
Trigger: GCAGGACAAGAGAAGAGCTGGACAGCCCAAGGCCCAGGCGCCCGCCAGGCAGTTATGGGATCCAGTAAAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6
CDS GCA 72 bp TTTGGTTGCTCACATACTAAAAGGGCATTGGTGAGATaGTCAAAGCCCATTCCGCGCTCCCCTCTAATTAAA +
Preference number: 6 (lower is better)
Translates to: FGCSHTKRALVR*SKPIPRSPLIK
Trigger: TTTAATTAGAGGGGAGCGCGGAATGGGCTTTGAGCATCTCACCAATGCCCTTTTAGTATGTGAGCAACCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021482.6