RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TOB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037573

Ensembl transcript IDs: ENSMUST00000041589.6

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp AGTGGAGGCGGCGGCTGGGATGATGACGGCTGCTGCTGCTGCTGCTaGTGTGGCTGCGGCTGTGGCTGCTGCTGGCTGCCCAGGCCCAGC +
Preference number: 5 (lower is better)
Translates to: SGGGGWDDDGCCCCC*CGCGCGCCWLPRPS
Trigger: GCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCGTCATCATCCCAGCCGCCGCCTCCACT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp GGCGGCTGGGATGATGACGGCTGCTGCTGCTGCTGCTGCTGTGGCTaGGGCTGTGGCTGCTGCTGGCTGCCCAGGCCCAGCCCATACAGA +
Preference number: 5 (lower is better)
Translates to: GGWDDDGCCCCCCCG*GCGCCWLPRPSPYR
Trigger: TCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCGTCATCATCCCAGCCGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp TGCTGCTGCGGTAGTGGAGGCGGCGGCTGGGATGATGACGGCTGCTaGTGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTGCTGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: CCCGSGGGGWDDDGC*CCCCCGCGCGCCWL
Trigger: CAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCGTCATCATCCCAGCCGCCGCCTCCACTACCGCAGCAGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp GACGGCTGCTGCTGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTGCTaGTGGCTGCCCAGGCCCAGCCCATACAGAGAGTGCACTGAGGAA +
Preference number: 5 (lower is better)
Translates to: DGCCCCCCCGCGCGC*WLPRPSPYRECTEE
Trigger: TTCCTCAGTGCACTCTCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp GATGACGGCTGCTGCTGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTaGTGCTGGCTGCCCAGGCCCAGCCCATACAGAGAGTGCACTGAG +
Preference number: 5 (lower is better)
Translates to: DDGCCCCCCCGCGCG*CWLPRPSPYRECTE
Trigger: CTCAGTGCACTCTCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCGTCATC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CCA 90 bp GGCTGCTGCTGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTGCTGCTaGCTGCCCAGGCCCAGCCCATACAGAGAGTGCACTGAGGAAGAG +
Preference number: 5 (lower is better)
Translates to: GCCCCCCCGCGCGCC*LPRPSPYRECTEEE
Trigger: CTCTTCCTCAGTGCACTCTCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp GCTGCTGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTGCTGCTGGCTaGCCAGGCCCAGCCCATACAGAGAGTGCACTGAGGAAGAGATGG +
Preference number: 5 (lower is better)
Translates to: AAAAAAVAAAVAAAG*PGPAHTESALRKRW
Trigger: CCATCTCTTCCTCAGTGCACTCTCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp TTGGCATTGGGAGAAAGAGCAGAGGTTTGCTGCTGCTGCTGCTGCTaGTGCTGTGGCTGCTGCTGCTGCTGCTGCGGTAGTGGAGGCGGC +
Preference number: 5 (lower is better)
Translates to: LALGERAEVCCCCCC*CCGCCCCCCGSGGG
Trigger: GCCGCCTCCACTACCGCAGCAGCAGCAGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAAACCTCTGCTCTTTCTCCCAATGCCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp TCCTTGGCATTGGGAGAAAGAGCAGAGGTTTGCTGCTGCTGCTGCTaGTGCTGCTGTGGCTGCTGCTGCTGCTGCTGCGGTAGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: SLALGERAEVCCCCC*CCCGCCCCCCGSGG
Trigger: GCCTCCACTACCGCAGCAGCAGCAGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAAACCTCTGCTCTTTCTCCCAATGCCAAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp AATTCCTTGGCATTGGGAGAAAGAGCAGAGGTTTGCTGCTGCTGCTaGTGCTGCTGCTGTGGCTGCTGCTGCTGCTGCTGCGGTAGTGGA +
Preference number: 5 (lower is better)
Translates to: NSLALGERAEVCCCC*CCCCGCCCCCCGSG
Trigger: TCCACTACCGCAGCAGCAGCAGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAAACCTCTGCTCTTTCTCCCAATGCCAAGGAATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CCA 90 bp GGCTGCCCAGGCCCAGCCCATACAGAGAGTGCACTGAGGAAGAGATaGCTTTCTGCTTCAGGAGGTCGTTCACATTTACAGTCAGGCCCA +
Preference number: 5 (lower is better)
Translates to: GCPGPAHTESALRKR*LSASGGRSHLQSGP
Trigger: TGGGCCTGACTGTAAATGTGAACGACCTCCTGAAGCAGAAAGCCATCTCTTCCTCAGTGCACTCTCTGTATGGGCTGGGCCTGGGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CCA 90 bp GTGGCAGATTGCCACGAACATCGTCAATGTCCAAACCACTCTCTTTaGATGCCTGCTCGATCACGGGGTCTACCTTCTCCCCCACGTGTA +
Preference number: 5 (lower is better)
Translates to: VADCHEHRQCPNHSL*MPARSRGLPSPPRV
Trigger: TACACGTGGGGGAGAAGGTAGACCCCGTGATCGAGCAGGCATCCAAAGAGAGTGGTTTGGACATTGACGATGTTCGTGGCAATCTGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp AGGCCCAGCCCATACAGAGAGTGCACTGAGGAAGAGATGGCTTTCTaGTTCAGGAGGTCGTTCACATTTACAGTCAGGCCCAGGTTGATC +
Preference number: 5 (lower is better)
Translates to: RPSPYRECTEEEMAF*FRRSFTFTVRPRLI
Trigger: GATCAACCTGGGCCTGACTGTAAATGTGAACGACCTCCTGAAGCAGAAAGCCATCTCTTCCTCAGTGCACTCTCTGTATGGGCTGGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS TCA 90 bp CTTTCTGCTTCAGGAGGTCGTTCACATTTACAGTCAGGCCCAGGTTaGTCGGAGAAGTGCGAGCTACCTTGCTGCTACGGCCACTATTCT +
Preference number: 5 (lower is better)
Translates to: LSASGGRSHLQSGPG*SEKCELPCCYGHYS
Trigger: AGAATAGTGGCCGTAGCAGCAAGGTAGCTCGCACTTCTCCGATCAACCTGGGCCTGACTGTAAATGTGAACGACCTCCTGAAGCAGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp CAGATTGCCACGAACATCGTCAATGTCCAAACCACTCTCTTTGGATaGCTGCTCGATCACGGGGTCTACCTTCTCCCCCACGTGTATACA +
Preference number: 5 (lower is better)
Translates to: QIATNIVNVQTTLFG*LLDHGVYLLPHVYT
Trigger: TGTATACACGTGGGGGAGAAGGTAGACCCCGTGATCGAGCAGGCATCCAAAGAGAGTGGTTTGGACATTGACGATGTTCGTGGCAATCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 90 bp TTGCCACGAACATCGTCAATGTCCAAACCACTCTCTTTGGATGCCTaGTCGATCACGGGGTCTACCTTCTCCCCCACGTGTATACATCTA +
Preference number: 5 (lower is better)
Translates to: LPRTSSMSKPLSLDA*SITGSTFSPTCIHL
Trigger: TAGATGTATACACGTGGGGGAGAAGGTAGACCCCGTGATCGAGCAGGCATCCAAAGAGAGTGGTTTGGACATTGACGATGTTCGTGGCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS TCA 90 bp TTGAGGGGGCTGTCACCTGGGAACATTCCATTGGTACTACTACCTTaGCCCTGCATGTTAGGAAAAATAAATTCCTTGGCATTGGGAGAA +
Preference number: 5 (lower is better)
Translates to: LRGLSPGNIPLVLLP*PCMLGKINSLALGE
Trigger: TTCTCCCAATGCCAAGGAATTTATTTTTCCTAACATGCAGGGTCAAGGTAGTAGTACCAATGGAATGTTCCCAGGTGACAGCCCCCTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CCA 72 bp CGGCTGCTGCTGCTGCTGCTGCTGTGGCTGCGGCTGTaGCTGCTGCTGGCTGCCCAGGCCCAGCCCATACAG +
Preference number: 6 (lower is better)
Translates to: RLLLLLLLWLRL*LLLAAQAQPIQ
Trigger: CTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp GATGATGACGGCTGCTGCTGCTGCTGCTGCTGTGGCTaGGGCTGTGGCTGCTGCTGGCTGCCCAGGCCCAGC +
Preference number: 6 (lower is better)
Translates to: DDDGCCCCCCCG*GCGCCWLPRPS
Trigger: GCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCGTCATCATC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp AGTGGAGGCGGCGGCTGGGATGATGACGGCTGCTGCTaGTGCTGCTGCTGTGGCTGCGGCTGTGGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: SGGGGWDDDGCC*CCCCGCGCGCC
Trigger: GCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCGTCATCATCCCAGCCGCCGCCTCCACT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp GGTAGTGGAGGCGGCGGCTGGGATGATGACGGCTGCTaGTGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTGC +
Preference number: 6 (lower is better)
Translates to: GSGGGGWDDDGC*CCCCCGCGCGC
Trigger: GCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCAGCCGTCATCATCCCAGCCGCCGCCTCCACTACC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp GCTGCTGCTGTGGCTGCGGCTGTGGCTGCTGCTGGCTaGCCAGGCCCAGCCCATACAGAGAGTGCACTGAGG +
Preference number: 6 (lower is better)
Translates to: AAAVAAAVAAAG*PGPAHTESALR
Trigger: CCTCAGTGCACTCTCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp TGCTGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTGCTaGTGGCTGCCCAGGCCCAGCCCATACAGAGAGTGC +
Preference number: 6 (lower is better)
Translates to: CCCCCCGCGCGC*WLPRPSPYREC
Trigger: GCACTCTCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp TGCTGCTGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTaGTGCTGGCTGCCCAGGCCCAGCCCATACAGAGAG +
Preference number: 6 (lower is better)
Translates to: CCCCCCCGCGCG*CWLPRPSPYRE
Trigger: CTCTCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCAGCAGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CCA 72 bp TGCTGCTGCTGCTGTGGCTGCGGCTGTGGCTGCTGCTaGCTGCCCAGGCCCAGCCCATACAGAGAGTGCACT +
Preference number: 6 (lower is better)
Translates to: CCCCCGCGCGCC*LPRPSPYRECT
Trigger: AGTGCACTCTCTGTATGGGCTGGGCCTGGGCAGCCAGCAGCAGCCACAGCCGCAGCCACAGCAGCAGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp GCATTGGGAGAAAGAGCAGAGGTTTGCTGCTGCTGCTaGTGCTGCTGCTGTGGCTGCTGCTGCTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: ALGERAEVCCCC*CCCCGCCCCCC
Trigger: GCAGCAGCAGCAGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAAACCTCTGCTCTTTCTCCCAATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp TCCTTGGCATTGGGAGAAAGAGCAGAGGTTTGCTGCTaGTGCTGCTGCTGCTGCTGTGGCTGCTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: SLALGERAEVCC*CCCCCCGCCCC
Trigger: GCAGCAGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAAACCTCTGCTCTTTCTCCCAATGCCAAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS TCA 72 bp CTGGCTGCCCAGGCCCAGCCCATACAGAGAGTGCACTaGGGAAGAGATGGCTTTCTGCTTCAGGAGGTCGTT +
Preference number: 6 (lower is better)
Translates to: LAAQAQPIQRVH*GRDGFLLQEVV
Trigger: AACGACCTCCTGAAGCAGAAAGCCATCTCTTCCTCAGTGCACTCTCTGTATGGGCTGGGCCTGGGCAGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CAA 90 bp TGTGGCAGATTGCCACGAACATCGTCAATGTCCAAACCACTCTCTTaGGATGCCTGCTCGATCACGGGGTCTACCTTCTCCCCCACGTGT +
Preference number: 6 (lower is better)
Translates to: CGRLPRTSSMSKPLS*DACSITGSTFSPTC
Trigger: ACACGTGGGGGAGAAGGTAGACCCCGTGATCGAGCAGGCATCCAAAGAGAGTGGTTTGGACATTGACGATGTTCGTGGCAATCTGCCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp ACATCGTCAATGTCCAAACCACTCTCTTTGGATGCCTaGTCGATCACGGGGTCTACCTTCTCCCCCACGTGT +
Preference number: 6 (lower is better)
Translates to: TSSMSKPLSLDA*SITGSTFSPTC
Trigger: ACACGTGGGGGAGAAGGTAGACCCCGTGATCGAGCAGGCATCCAAAGAGAGTGGTTTGGACATTGACGATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CAA 72 bp GTCAGGCCCAGGTTGATCGGAGAAGTGCGAGCTACCTaGCTGCTACGGCCACTATTCTTCATTTTGGTGGAG +
Preference number: 6 (lower is better)
Translates to: VRPRLIGEVRAT*LLRPLFFILVE
Trigger: CTCCACCAAAATGAAGAATAGTGGCCGTAGCAGCAAGGTAGCTCGCACTTCTCCGATCAACCTGGGCCTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CAA 72 bp TTCAGGAGGTCGTTCACATTTACAGTCAGGCCCAGGTaGATCGGAGAAGTGCGAGCTACCTTGCTGCTACGG +
Preference number: 6 (lower is better)
Translates to: FRRSFTFTVRPR*IGEVRATLLLR
Trigger: CCGTAGCAGCAAGGTAGCTCGCACTTCTCCGATCAACCTGGGCCTGACTGTAAATGTGAACGACCTCCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CAA 90 bp GCTTTCTGCTTCAGGAGGTCGTTCACATTTACAGTCAGGCCCAGGTaGATCGGAGAAGTGCGAGCTACCTTGCTGCTACGGCCACTATTC +
Preference number: 6 (lower is better)
Translates to: AFCFRRSFTFTVRPR*IGEVRATLLLRPLF
Trigger: GAATAGTGGCCGTAGCAGCAAGGTAGCTCGCACTTCTCCGATCAACCTGGGCCTGACTGTAAATGTGAACGACCTCCTGAAGCAGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CAA 72 bp TTGCCACGAACATCGTCAATGTCCAAACCACTCTCTTaGGATGCCTGCTCGATCACGGGGTCTACCTTCTCC +
Preference number: 6 (lower is better)
Translates to: LPRTSSMSKPLS*DACSITGSTFS
Trigger: GGAGAAGGTAGACCCCGTGATCGAGCAGGCATCCAAAGAGAGTGGTTTGGACATTGACGATGTTCGTGGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CAA 90 bp ACATTTACAGTCAGGCCCAGGTTGATCGGAGAAGTGCGAGCTACCTaGCTGCTACGGCCACTATTCTTCATTTTGGTGGAGCCGAACTTG +
Preference number: 6 (lower is better)
Translates to: TFTVRPRLIGEVRAT*LLRPLFFILVEPNL
Trigger: CAAGTTCGGCTCCACCAAAATGAAGAATAGTGGCCGTAGCAGCAAGGTAGCTCGCACTTCTCCGATCAACCTGGGCCTGACTGTAAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS GCA 72 bp CCATACAGAGAGTGCACTGAGGAAGAGATGGCTTTCTaGTTCAGGAGGTCGTTCACATTTACAGTCAGGCCC +
Preference number: 6 (lower is better)
Translates to: PYRECTEEEMAF*FRRSFTFTVRP
Trigger: GGGCCTGACTGTAAATGTGAACGACCTCCTGAAGCAGAAAGCCATCTCTTCCTCAGTGCACTCTCTGTATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS TCA 72 bp GTCTACCTTCTCCCCCACGTGTATACATCTAAACCCTaGGCCTTTGTATGGCTTTTCAGGATACCAGTGCCC +
Preference number: 6 (lower is better)
Translates to: VYLLPHVYTSKP*AFVWLFRIPVP
Trigger: GGGCACTGGTATCCTGAAAAGCCATACAAAGGCTCAGGGTTTAGATGTATACACGTGGGGGAGAAGGTAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CAA 90 bp GTTGAGGGGGCTGTCACCTGGGAACATTCCATTGGTACTACTACCTaGACCCTGCATGTTAGGAAAAATAAATTCCTTGGCATTGGGAGA +
Preference number: 6 (lower is better)
Translates to: VEGAVTWEHSIGTTT*TLHVRKNKFLGIGR
Trigger: TCTCCCAATGCCAAGGAATTTATTTTTCCTAACATGCAGGGTCAAGGTAGTAGTACCAATGGAATGTTCCCAGGTGACAGCCCCCTCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS CAA 72 bp TTCTCCCCCACGTGTATACATCTAAACCCTGAGCCTTaGTATGGCTTTTCAGGATACCAGTGCCCTTCATAT +
Preference number: 6 (lower is better)
Translates to: FSPTCIHLNPEP*YGFSGYQCPSY
Trigger: ATATGAAGGGCACTGGTATCCTGAAAAGCCATACAAAGGCTCAGGGTTTAGATGTATACACGTGGGGGAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6
CDS TCA 72 bp CTGTCACCTGGGAACATTCCATTGGTACTACTACCTTaGCCCTGCATGTTAGGAAAAATAAATTCCTTGGCA +
Preference number: 6 (lower is better)
Translates to: LSPGNIPLVLLP*PCMLGKINSLA
Trigger: TGCCAAGGAATTTATTTTTCCTAACATGCAGGGTCAAGGTAGTAGTACCAATGGAATGTTCCCAGGTGACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041589.6