RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNS2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037003

Ensembl transcript IDs: ENSMUST00000046144.10, ENSMUST00000169627.9, ENSMUST00000228958.2, ENSMUST00000229592.2, ENSMUST00000230474.2

Found 623 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGAAAGAGCAGTaGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGG +
Preference number: 1 (lower is better)
Translates to: GAHSLSLAGKGRKEQ*PRCCHSLFHRGQAR
Trigger: CCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCACTGCTCTTTCCTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR GCA 90 bp CTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATaGTGGGAGGGTGCAGTGTGGGTGTGCACTCGGAGCTTGTGGCTT +
Preference number: 1 (lower is better)
Translates to: LPLSQGPGQGSERCG*WEGAVWVCTRSLWL
Trigger: AAGCCACAAGCTCCGAGTGCACACCCACACTGCACCCTCCCAGCATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR CCA 90 bp CCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGCTaGGAGGGTGCAGTGTGGGTGTGCACTCGGAGCTTGTGGCTTTCC +
Preference number: 1 (lower is better)
Translates to: PLSQGPGQGSERCGC*EGAVWVCTRSLWLS
Trigger: GGAAAGCCACAAGCTCCGAGTGCACACCCACACTGCACCCTCCCAGCATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR GCA 90 bp CTCAGCTTAGCAGGCAAGGGCAGGAAAGAGCAGTGGCCCAGATGCTaGCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCT +
Preference number: 1 (lower is better)
Translates to: LSLAGKGRKEQWPRC*HSLFHRGQARVVSA
Trigger: AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCACTGCTCTTTCCTGCCCTTGCCTGCTAAGCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR GCA 90 bp TCACTCAGCTTAGCAGGCAAGGGCAGGAAAGAGCAGTGGCCCAGATaGTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGC +
Preference number: 1 (lower is better)
Translates to: SLSLAGKGRKEQWPR*CHSLFHRGQARVVS
Trigger: GCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCACTGCTCTTTCCTGCCCTTGCCTGCTAAGCTGAGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR CCA 90 bp CTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTaGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATG +
Preference number: 1 (lower is better)
Translates to: LSFSLCLCDPTLVSV*REGRKLSSFSHPSM
Trigger: CATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTTGGATGCTGGGAGGGTaGAGTGTGGGTGTGCACTCG +
Preference number: 2 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAWMLGG*SVGVHS
Trigger: CGAGTGCACACCCACACTGCACCCTCCCAGCATCCA...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGTGGATGCTGGGAGGGTaGAGTGTGGGTGTGCACTCG +
Preference number: 2 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEWMLGG*SVGVHS
Trigger: CGAGTGCACACCCACACTGCACCCTCCCAGCATCCA...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGAGCGCTGTGGATGCTaGGAGGGTGCAGTGTGGGTG +
Preference number: 2 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQERCGC*EGAVWV
Trigger: CACCCACACTGCACCCTCCCAGCATCCACAGCGCTC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCAGTGGCCCAGATGCTaGCACTCCCTCTTTCACAGG +
Preference number: 2 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQQWPRC*HSLFHR
Trigger: CCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCACTG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGGGAGCTGGGTGGAGCTaGCAGGGTCATTCCCCTCCA +
Preference number: 2 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGGAGWS*QGHSPP
Trigger: TGGAGGGGAATGACCCTGCCAGCTCCACCCAGCTCC...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGATGCCATCTGCTCACATaGCAGGTCACCTTAGGGGCC +
Preference number: 2 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGCHLLT*QVTLGA
Trigger: GGCCCCTAAGGTGACCTGGCATGTGAGCAGATGGCA...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTGCCATCTGCTCACATaGCAGGTCACCTTAGGGGCC +
Preference number: 2 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGCHLLT*QVTLGA
Trigger: GGCCCCTAAGGTGACCTGGCATGTGAGCAGATGGCA...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATAGTGAGCGCTGTGGATaGTGGGAGGGTGCAGTGTGG +
Preference number: 2 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDSERCG*WEGAVW
Trigger: CCACACTGCACCCTCCCAGCATCCACAGCGCTCACT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACCTCACACCTGTCTCTaGCATCTGCTCACATGCCAG +
Preference number: 2 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGPHTCL*HLLTCQ
Trigger: CTGGCATGTGAGCAGATGGCAGAGACAGGTGTGAGG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGAGCGCTGTGGATGCTaGGAGGGTGCAGTGTGGGTG +
Preference number: 2 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGERCGC*EGAVWV
Trigger: CACCCACACTGCACCCTCCCAGCATCCACAGCGCTC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGGAGCTGGGTGGAGCTaGCAGGGTCATTCCCCTCCA +
Preference number: 2 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGGAGWS*QGHSPP
Trigger: TGGAGGGGAATGACCCTGCCAGCTCCACCCAGCTCC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAGTGAGCGCTGTGGATaGTGGGAGGGTGCAGTGTGG +
Preference number: 2 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGSERCG*WEGAVW
Trigger: CCACACTGCACCCTCCCAGCATCCACAGCGCTCACT...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGAGCAGTGGCCCAGATaGTGCCACTCCCTCTTTCAC +
Preference number: 2 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDEQWPR*CHSLFH
Trigger: GTGAAAGAGGGAGTGGCAGCATCTGGGCCACTGCTC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATTGCCATCTGCTCACATaGCAGGTCACCTTAGGGGCC +
Preference number: 2 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDCHLLT*QVTLGA
Trigger: GGCCCCTAAGGTGACCTGGCATGTGAGCAGATGGCA...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR GCA 72 bp TCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATaGTGGGAGGGTGCAGTGTGGGTGTGCACTCGGAGC +
Preference number: 3 (lower is better)
Translates to: SQGPGQGSERCG*WEGAVWVCTRS
Trigger: GCTCCGAGTGCACACCCACACTGCACCCTCCCAGCATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR GCA 72 bp TTAGCAGGCAAGGGCAGGAAAGAGCAGTGGCCCAGATaGTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGG +
Preference number: 3 (lower is better)
Translates to: LAGKGRKEQWPR*CHSLFHRGQAR
Trigger: CCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCACTGCTCTTTCCTGCCCTTGCCTGCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR CCA 72 bp TCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTaGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCAT +
Preference number: 3 (lower is better)
Translates to: SLCLCDPTLVSV*REGRKLSSFSH
Trigger: ATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
3UTR CCA 72 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTaGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAA +
Preference number: 3 (lower is better)
Translates to: DSLFPSVYVTPL*SLCGGKAGSFQ
Trigger: TTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGGCTCCCGGAAGCCCTaGCGGCAGGAGCAGCGTCGA +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEGSRKP*RQEQRR
Trigger: TCGACGCTGCTCCTGCCGTCAGGGCTTCCGGGAGCC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTTGCTGGTGGCCCGGCTaGTGTCCCTCCTCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCCWWPG*CPSSPG
Trigger: CCCTGGGGAGGAGGGACAGCAGCCGGGCCACCAGCA...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTTCTTTCAGCAGCAGTTaGGGGCGGCCGGCCGGGGGA +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSASFSSS*GRPAGG
Trigger: TCCCCCGGCCGGCCGCCCCCAACTGCTGCTGAAAGA...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCCAGCCCGTGGTGAGTaGGCACCAGGGCTGGGGTAC +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEPARGE*APGLGY
Trigger: GTACCCCAGCCCTGGTGCCCACTCACCACGGGCTGG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCCAGCCCGTGGTGAGTaGGCACCAGGGCTGGGGTAC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAPARGE*APGLGY
Trigger: GTACCCCAGCCCTGGTGCCCACTCACCACGGGCTGG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCCCTGCCACGGGGCATaGCGAAGTCCAGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAPCHGA*RSPGRV
Trigger: CACCCTGCCTGGACTTCGCCATGCCCCGTGGCAGGG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGCGGACCAGCTGTTCTaGGGGGTCCCCTTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAADQLF*GVPFPG
Trigger: CCCTGGAAAGGGGACCCCTCAGAACAGCTGGTCCGC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTTGGCCTCGGTGTCGCTaGTCGTCCGGTCGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAWPRCR*SSGRAG
Trigger: TCCTGCACGACCGGACGAGCAGCGACACCGAGGCCA...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGGTGGCGACGGCTGTTaGCCAGACCCAGGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEGGDGC*PDPGRC
Trigger: ACACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGGTGGCGACGGCTGTTaGCCAGACCCAGGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAGGDGC*PDPGRC
Trigger: ACACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCCACCACGGCCCGCACTaGCCACTCCACAACCTCCCA +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPHHGPH*PLHNLP
Trigger: TGGGAGGTTGTGGAGTGGCCAGTGCGGGCCGTGGTG...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGAGTGGGCACCAGGGCTaGGGTACCCTCGGCCTTCAC +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSESGHQG*GTLGLH
Trigger: GTGAAGGCCGAGGGTACCCCAGCCCTGGTGCCCACT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCCGGGTGCAGAGGTCTaGGAGAAGGGGCTAGGGTCC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAPGAEV*EKGLGS
Trigger: GGACCCTAGCCCCTTCTCCCAGACCTCTGCACCCGG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCCCTGAGGCCAGCCATTaGGTGAGCCGGGTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPPEASH*VSRVQR
Trigger: CCTCTGCACCCGGCTCACCCAATGGCTGGCCTCAGG...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
66% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCCTGCAGAGCTGGCCTTaGCCACAGCCTGAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPLQSWP*PQPEGQ
Trigger: CTGGCCCTCAGGCTGTGGCCAAGGCCAGCTCTGCAG...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGCCAGAGTCGCTGCTaGCAGAGAGCATCGGGGGTG +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCGQSRC*QRASGV
Trigger: CACCCCCGATGCTCTCTGTCAGCAGCGACTCTGGCC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTAGGAGCAGCGTCGACTaGGTCCAGGCCTGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCRSSVD*VQACGL
Trigger: CAGGCCACAGGCCTGGACTCAGTCGACGCTGCTCCT...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCCTGGGCTCCTTTCCTaGGGCCAGCCATTGGGTGAG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAPGLLS*GQPLGE
Trigger: CTCACCCAATGGCTGGCCTCAGGAAAGGAGCCCAGG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGCCATCTGGGCTATCTaGAGTGCCCCGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCAIWAI*SAPRAL
Trigger: CAGGGCCCTCGGGGCACTTCAGATAGCCCAGATGGC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCGGGGTGGTTCTGGGCTaGCCACAAGCCAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPGVVLG*PQARAS
Trigger: AGATGCCCTGGCTTGTGGGCAGCCCAGAACCACCCC...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGCTGCAGCTCAGAGCTaGAGAGCTGGCCTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEAAAQS*RAGLGH
Trigger: GTGGCCAAGGCCAGCTCTGCAGCTCTGAGCTGCAGC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGTCCTCGGCCTGCTGGTaGCCCGGCTGCTGTCCCTCC +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRSSACW*PGCCPS
Trigger: GGAGGGACAGCAGCCGGGCCACCAGCAGGCCGAGGA...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCTCTGGAGAAGGTGCTaGTGGTGTCTGGCGGGGGAC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSALWRRC*WCLAGD
Trigger: GTCCCCCGCCAGACACCACCAGCACCTTCTCCAGAG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCTCCCGGTAGCCTGCTaGACGGTAGCCAAAGTCCCC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSALPVAC*TVAKVP
Trigger: GGGGACTTTGGCTACCGTCCAGCAGGCTACCGGGAG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCTGCCCGGCCATATGCTaGGCAGTAGCTGGGAACCGC +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPCPAIC*AVAGNR
Trigger: GCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCA...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCCCTGCCACGGGGCATaGCGAAGTCCAGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQPCHGA*RSPGRV
Trigger: CACCCTGCCTGGACTTCGCCATGCCCCGTGGCAGGG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGCTCTGGGGTGGTTCTaGGCTGCCCACAAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDALGWF*AAHKPG
Trigger: CCCTGGCTTGTGGGCAGCCCAGAACCACCCCAGAGC...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGGGGTGGGTGAGCTCTaGGGTGGTTCTGGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQGVGEL*GGSGLP
Trigger: GGGCAGCCCAGAACCACCCCAGAGCTCACCCACCCC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCAACACAACCACGTGCTaGGGGTCGGCACTGAGCCAC +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPNTTTC*GSALSH
Trigger: GTGGCTCAGTGCCGACCCTCAGCACGTGGTTGTGTT...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGTGGGGTGTTGCCTTTaGCCTTCTCAGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEVGCCL*PSQGWR
Trigger: CCTCCAGCCCTGAGAAGGTCAAAGGCAACACCCCAC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGAGGAGCAGCGTCGACTaGGTCCAGGCCTGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQRSSVD*VQACGL
Trigger: CAGGCCACAGGCCTGGACTCAGTCGACGCTGCTCCT...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCCCAGGACTCAGTCTCTaGGTGGGTGCCAAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPPGLSL*VGAKEG
Trigger: TCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGG...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTTGGGCCCAGTCTCGATaGGGAAATGGCGGACCAGCT +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAWAQSR*GNGGPA
Trigger: AGCTGGTCCGCCATTTCCTCATCGAGACTGGGCCCA...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGTGGGCCCAGTCTCGATaGGGAAATGGCGGACCAGCT +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEWAQSR*GNGGPA
Trigger: AGCTGGTCCGCCATTTCCTCATCGAGACTGGGCCCA...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGATGCTGGTGGCCCGGCTaGTGTCCCTCCTCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGCWWPG*CPSSPG
Trigger: CCCTGGGGAGGAGGGACAGCAGCCGGGCCACCAGCA...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR GCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCTGCCAGCGCCTGGTCTaGCCCTGCAGAGATCTTGCT +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPCQRLV*PCRDLA
Trigger: AGCAAGATCTCTGCAGGGGCAGACCAGGCGCTGGCA...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCCTGGGCATAAGGACTaGCATCCAGGGGGCCCCTTG +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDPGHKD*HPGGPL
Trigger: CAAGGGGCCCCCTGGATGGCAGTCCTTATGCCCAGG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCTCCACAGAGGCTTCTaGGTAGCCCTGGGGGTGTCC +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDLHRGF*VALGVS
Trigger: GGACACCCCCAGGGCTACGCAGAAGCCTCTGTGGAG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCACCTCCCGGTAGCCTaGTGGACGGTAGCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEHLPVA*WTVAKV
Trigger: GACTTTGGCTACCGTCCAGCAGGCTACCGGGAGGTG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCGGGCTAGGGTCCAGTTaGTCAGGCCTGCTGCTTGTC +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPGLGSS*SGLLLV
Trigger: GACAAGCAGCAGGCCTGAGCAACTGGACCCTAGCCC...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGGGGTGGTTCTGGGCTaGCCACAAGCCAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDGVVLG*PQARAS
Trigger: AGATGCCCTGGCTTGTGGGCAGCCCAGAACCACCCC...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGCTGCAGCTCAGAGCTaGAGAGCTGGCCTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDAAAQS*RAGLGH
Trigger: GTGGCCAAGGCCAGCTCTGCAGCTCTGAGCTGCAGC...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTCTGGGTTGGTCCATCTaGGGTCCTGGGGGTCAGTGC +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCLGWSI*GPGGQC
Trigger: GCACTGACCCCCAGGACCGCAGATGGACCAACCCAG...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAAGGGTTGCCAGCGCCTaGTCTGCCCCTGCAGAGATC +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGRVASA*SAPAEI
Trigger: GATCTCTGCAGGGGCAGACCAGGCGCTGGCAACCCT...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTCTCTGGAGAAGGTGCTaGTGGTGTCTGGCGGGGGAC +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCLWRRC*WCLAGD
Trigger: GTCCCCCGCCAGACACCACCAGCACCTTCTCCAGAG...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCACCAGCAGAGGCAATaGGTGTCCAGGCCTCACTGG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAHQQRQ*VSRPHW
Trigger: CCAGTGAGGCCTGGACACCCATTGCCTCTGCTGGTG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATTGCCCGGCCATATGCTaGGCAGTAGCTGGGAACCGC +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDCPAIC*AVAGNR
Trigger: GCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCA...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGAGTGGGCACCAGGGCTaGGGTACCCTCGGCCTTCAC +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQSGHQG*GTLGLH
Trigger: GTGAAGGCCGAGGGTACCCCAGCCCTGGTGCCCACT...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCCAAGGAGGGAGACCTaGTGGTGTCTTGCCGTCGGT +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEPRRET*WCLAVG
Trigger: ACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCCGGGTGCAGAGGTCTaGGAGAAGGGGCTAGGGTCC +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQPGAEV*EKGLGS
Trigger: GGACCCTAGCCCCTTCTCCCAGACCTCTGCACCCGG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGAAGTCCAGGCAGGGTaGTTGGCACAGGGCTCCGAG +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCEVQAG*LAQGSE
Trigger: CTCGGAGCCCTGTGCCAACCACCCTGCCTGGACTTC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGAAGTCCAGGCAGGGTaGTTGGCACAGGGCTCCGAG +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDEVQAG*LAQGSE
Trigger: CTCGGAGCCCTGTGCCAACCACCCTGCCTGGACTTC...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCTGCAGAGCTGGCCTTaGCCACAGCCTGAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQLQSWP*PQPEGQ
Trigger: CTGGCCCTCAGGCTGTGGCCAAGGCCAGCTCTGCAG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGCTCCGTTACATAGGTaGGGTCCAAGTCCCAGCGAC +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEAPLHR*GPSPSD
Trigger: GTCGCTGGGACTTGGACCTCACCTATGTAACGGAGC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGCTCCGTTACATAGGTaGGGTCCAAGTCCCAGCGAC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAAPLHR*GPSPSD
Trigger: GTCGCTGGGACTTGGACCTCACCTATGTAACGGAGC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGGCTCCCGGAAGCCCTaGCGGCAGGAGCAGCGTCGA +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHGSRKP*RQEQRR
Trigger: TCGACGCTGCTCCTGCCGTCAGGGCTTCCGGGAGCC...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCAGCCAAGGGTCCTGTTaGGGCCAGGTGTCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPSQGSC*GQVSRK
Trigger: CTTTCTGGACACCTGGCCTCAACAGGACCCTTGGCT...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGAGCCAAGGGTCCTGTTaGGGCCAGGTGTCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSESQGSC*GQVSRK
Trigger: CTTTCTGGACACCTGGCCTCAACAGGACCCTTGGCT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACCAGGACTCAGTCTCTaGGTGGGTGCCAAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGPGLSL*VGAKEG
Trigger: TCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGG...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCCTGGGCTCCTTTCCTaGGGCCAGCCATTGGGTGAG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQPGLLS*GQPLGE
Trigger: CTCACCCAATGGCTGGCCTCAGGAAAGGAGCCCAGG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGCGGACCAGCTGTTCTaGGGGGTCCCCTTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRADQLF*GVPFPG
Trigger: CCCTGGAAAGGGGACCCCTCAGAACAGCTGGTCCGC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGCGGACCAGCTGTTCTaGGGGGTCCCCTTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWADQLF*GVPFPG
Trigger: CCCTGGAAAGGGGACCCCTCAGAACAGCTGGTCCGC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCCTGAGGGCCAGTCAATaGCTCTGTCTCCACCGAGGT +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPLRASQ*LCLHRG
Trigger: ACCTCGGTGGAGACAGAGTCATTGACTGGCCCTCAG...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGCCTTGGCCACAGCCTaGGGGCCAGTCAATGACTCT +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCALATA*GPVNDS
Trigger: AGAGTCATTGACTGGCCCTCAGGCTGTGGCCAAGGC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGTGGCCTCGGTGTCGCTaGTCGTCCGGTCGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRWPRCR*SSGRAG
Trigger: TCCTGCACGACCGGACGAGCAGCGACACCGAGGCCA...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCGCCTGGTCTGCCCCTaGAGAGATCTTGCTGTAGTG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSARLVCP*RDLAVV
Trigger: CACTACAGCAAGATCTCTGCAGGGGCAGACCAGGCG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCTGAGGCCCTGGACCTaGTATGCGGTAGACTCCAGA +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSELRPWT*YAVDSR
Trigger: TCTGGAGTCTACCGCATAGCAGGTCCAGGGCCTCAG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCCTGGGCATAAGGACTaGCATCCAGGGGGCCCCTTG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQPGHKD*HPGGPL
Trigger: CAAGGGGCCCCCTGGATGGCAGTCCTTATGCCCAGG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCAGTCCATACAGGGCTaGGGTGGGCAGTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDQSIQG*GGQCQL
Trigger: AAGCTGGCACTGCCCACCGCAGCCCTGTATGGACTG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCAGTCTCTGAGTGGGTaGCAAGGAGGGAGACCTGGT +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEQSLSG*QGGRPG
Trigger: ACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGGTGGCGACGGCTGTTaGCCAGACCCAGGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWGGDGC*PDPGRC
Trigger: ACACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGCACTGGGACCGGGCTaGAGCTCAGAGCTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWALGPG*SSELQS
Trigger: GCTCTGCAGCTCTGAGCTGCAGCCCGGTCCCAGTGC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGAAGCTGTGTGGTTCTaGTTTCCTCGGCTGCGGGTG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAEAVWF*FPRLRV
Trigger: CACCCGCAGCCGAGGAAAGCAGAACCACACAGCTTC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGTCCTCGGCCTGCTGGTaGCCCGGCTGCTGTCCCTCC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGSSACW*PGCCPS
Trigger: GGAGGGACAGCAGCCGGGCCACCAGCAGGCCGAGGA...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGAGGGCTGCAGTTCCGTaGCCACCTTGTCCTCACAGA +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSERAAVP*PPCPHR
Trigger: TCTGTGAGGACAAGGTGGCCACGGAACTGCAGCCCT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGCTGGAAGCCTGTGTTaGGCTCAAAGGCTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAAGSLC*AQRLAA
Trigger: TGCTGCCAGCCTTTGAGCCCAACACAGGCTTCCAGC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTCTTTCAGCAGCAGTTaGGGGCGGCCGGCCGGGGGA +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGSFSSS*GRPAGG
Trigger: TCCCCCGGCCGGCCGCCCCCAACTGCTGCTGAAAGA...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGCACCACGGCCCGCACTaGCCACTCCACAACCTCCCA +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWHHGPH*PLHNLP
Trigger: TGGGAGGTTGTGGAGTGGCCAGTGCGGGCCGTGGTG...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGTGGGCACCAGGGCTaGGGTACCCTCGGCCTTCAC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWSGHQG*GTLGLH
Trigger: GTGAAGGCCGAGGGTACCCCAGCCCTGGTGCCCACT...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACCAGCCCGTGGTGAGTaGGCACCAGGGCTGGGGTAC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGPARGE*APGLGY
Trigger: GTACCCCAGCCCTGGTGCCCACTCACCACGGGCTGG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCCATAACCCAGCTTCCTaGGCTGCAGGTAGGGTGGAC +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPHNPAS*AAGRVD
Trigger: GTCCACCCTACCTGCAGCCCAGGAAGCTGGGTTATG...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCATAACCCAGCTTCCTaGGCTGCAGGTAGGGTGGAC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAHNPAS*AAGRVD
Trigger: GTCCACCCTACCTGCAGCCCAGGAAGCTGGGTTATG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCCTGAACTGGGCTGCTaGTGTGTAAGGGTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAPELGC*CVRVWR
Trigger: CCTCCACACCCTTACACACCAGCAGCCCAGTTCAGG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACCAAGGAGGGAGACCTaGTGGTGTCTTGCCGTCGGT +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGPRRET*WCLAVG
Trigger: ACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGG...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCCGGGTGCAGAGGTCTaGGAGAAGGGGCTAGGGTCC +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRPGAEV*EKGLGS
Trigger: GGACCCTAGCCCCTTCTCCCAGACCTCTGCACCCGG...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGTTGGTGTGGCCTCCTaGGCTCCTTTCCTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDVGVAS*APFLRP
Trigger: TGGCCTCAGGAAAGGAGCCCAGGAGGCCACACCAAC...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGCTCTGGGGTGGTTCTaGGCTGCCCACAAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRALGWF*AAHKPG
Trigger: CCCTGGCTTGTGGGCAGCCCAGAACCACCCCAGAGC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGGGTGTTCTGGGGGTTaGGTGACATCTGGGAGAGGA +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEGCSGG*VTSGRG
Trigger: TCCTCTCCCAGATGTCACCCAACCCCCAGAACACCC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCTGCAGAGCTGGCCTTaGCCACAGCCTGAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRLQSWP*PQPEGQ
Trigger: CTGGCCCTCAGGCTGTGGCCAAGGCCAGCTCTGCAG...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATTCAGAGCTGCAGAGCTaGCCTTGGCCACAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDSELQS*PWPQPE
Trigger: CTCAGGCTGTGGCCAAGGCCAGCTCTGCAGCTCTGA...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTTCAGAGCTGCAGAGCTaGCCTTGGCCACAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCSELQS*PWPQPE
Trigger: CTCAGGCTGTGGCCAAGGCCAGCTCTGCAGCTCTGA...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGCTCCGTTACATAGGTaGGGTCCAAGTCCCAGCGAC +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCAPLHR*GPSPSD
Trigger: GTCGCTGGGACTTGGACCTCACCTATGTAACGGAGC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCCTGGGCTCCTTTCCTaGGGCCAGCCATTGGGTGAG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRPGLLS*GQPLGE
Trigger: CTCACCCAATGGCTGGCCTCAGGAAAGGAGCCCAGG...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGAAGGCAGGGGTGGGTaGGCTCTGGGGTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGEGRGG*ALGWFW
Trigger: CCAGAACCACCCCAGAGCTCACCCACCCCTGCCTTC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGAAGCTGTGTGGTTCTaGTTTCCTCGGCCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEEAVWF*FPRPAG
Trigger: ACCAGCAGGCCGAGGAAAGCAGAACCACACAGCTTC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR GCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTTCGTGCAGGAAAAGCTaGGGCCAAGATCCGCTCCGT +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCSCRKS*GQDPLR
Trigger: ACGGAGCGGATCTTGGCCGCAGCTTTTCCTGCACGA...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACTGAGGCCCTGGACCTaGTATGCGGTAGACTCCAGA +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGLRPWT*YAVDSR
Trigger: TCTGGAGTCTACCGCATAGCAGGTCCAGGGCCTCAG...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGAAGCTCTGGAGAAGGTaGTGGTGGTGTCTGGCGGGG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQKLWRR*WWCLAG
Trigger: CCCCGCCAGACACCACCAGCACCTTCTCCAGAGCTT...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGTCCGCAACTGTGAGGTaGCCGGCCATATGCTGGGCA +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQSATVR*PAICWA
Trigger: TGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGA...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGCTCTGAAGAAGCACTaGACTGAGGATCTCGGGGAG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAALKKH*TEDLGE
Trigger: CTCCCCGAGATCCTCAGTGCAGTGCTTCTTCAGAGC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGCTCTGAAGAAGCACTaGACTGAGGATCTCGGGGAG +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEALKKH*TEDLGE
Trigger: CTCCCCGAGATCCTCAGTGCAGTGCTTCTTCAGAGC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCTGGGCTATCTGAAGTaGCCCGAGGGCCCTGCCACG +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGLGYLK*PEGPAT
Trigger: CGTGGCAGGGCCCTCGGGGCACTTCAGATAGCCCAG...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACTGGGCTATCTGAAGTaGCCCGAGGGCCCTGCCACG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGLGYLK*PEGPAT
Trigger: CGTGGCAGGGCCCTCGGGGCACTTCAGATAGCCCAG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGCTGCAGCTCAGAGCTaGAGAGCTGGCCTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWAAAQS*RAGLGH
Trigger: GTGGCCAAGGCCAGCTCTGCAGCTCTGAGCTGCAGC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGCACTGGGACCGGGCTaGAGCTCAGAGCTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGALGPG*SSELQS
Trigger: GCTCTGCAGCTCTGAGCTGCAGCCCGGTCCCAGTGC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGCACTGGGACCGGGCTaGAGCTCAGAGCTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGALGPG*SSELQS
Trigger: GCTCTGCAGCTCTGAGCTGCAGCCCGGTCCCAGTGC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTTTCCTCGGCCTGCTaGTGGCCCGGCTGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGLSSAC*WPGCCP
Trigger: GGGACAGCAGCCGGGCCACCAGCAGGCCGAGGAAAG...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCACCGGTCCCATCGATaGTCACCTTACACACTGCAC +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEHRSHR*SPYTLH
Trigger: GTGCAGTGTGTAAGGTGACCATCGATGGGACCGGTG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGCTGGAAGCCTGTGTTaGGCTCAAAGGCTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDAGSLC*AQRLAA
Trigger: TGCTGCCAGCCTTTGAGCCCAACACAGGCTTCCAGC...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGTCTTTCAGCAGCAGTTaGGGGCGGCCGGCCGGGGGA +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGSFSSS*GRPAGG
Trigger: TCCCCCGGCCGGCCGCCCCCAACTGCTGCTGAAAGA...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTCCTGAACTGGGCTGCTaGTGTGTAAGGGTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCPELGC*CVRVWR
Trigger: CCTCCACACCCTTACACACCAGCAGCCCAGTTCAGG...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGTCCAGGCAGGGTGGTTaGCACAGGGCTCCGAGGACT +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWSRQGG*HRAPRT
Trigger: AGTCCTCGGAGCCCTGTGCCAACCACCCTGCCTGGA...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCCCTGCCACGGGGCATaGCGAAGTCCAGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHPCHGA*RSPGRV
Trigger: CACCCTGCCTGGACTTCGCCATGCCCCGTGGCAGGG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGGGGGTGGGTGAGCTCTaGGGTGGTTCTGGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGGVGEL*GGSGLP
Trigger: GGGCAGCCCAGAACCACCCCAGAGCTCACCCACCCC...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
61% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGGTGTTCTGGGGGTTaGGTGACATCTGGGAGAGGA +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCGCSGG*VTSGRG
Trigger: TCCTCTCCCAGATGTCACCCAACCCCCAGAACACCC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGGGCTGCGCACTGGGTaGAGGTGTAGCCACCTTGAG +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWGLRTG*RCSHLE
Trigger: CTCAAGGTGGCTACACCTCCACCCAGTGCGCAGCCC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGGGCTGCGCACTGGGTaGAGGTGTAGCCACCTTGAG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRGLRTG*RCSHLE
Trigger: CTCAAGGTGGCTACACCTCCACCCAGTGCGCAGCCC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGGAGGTGGCTCCATCTaGGTTGGTCCATCTGCGGTC +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQGGGSI*VGPSAV
Trigger: GACCGCAGATGGACCAACCCAGATGGAGCCACCTCC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTCCTCCCCAGGGCTCTaGGCAACCTTTCCACAGGGC +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGSSPGL*ATFPQG
Trigger: GCCCTGTGGAAAGGTTGCTCAGAGCCCTGGGGAGGA...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGCAGGGGGCAAGGCCTaGCAGGATGAAGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQAGGKA*QDEVTF
Trigger: AAAGGTGACTTCATCCTGTCAGGCCTTGCCCCCTGC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCTCTCTGTGCTTGGATTaGAGCACATGGGCTAGCTCG +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPSLCLD*STWASS
Trigger: CGAGCTAGCCCATGTGCTTCAATCCAAGCACAGAGA...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGTGCATGTGTGGAACTaGACTCGGAACACGAGGGTC +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDVHVWN*TRNTRV
Trigger: GACCCTCGTGTTCCGAGTTCAGTTCCACACATGCAC...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGAGCCAAGGGTCCTGTTaGGGCCAGGTGTCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQSQGSC*GQVSRK
Trigger: CTTTCTGGACACCTGGCCTCAACAGGACCCTTGGCT...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGAAGGCAGGGGTGGGTaGGCTCTGGGGTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLEGRGG*ALGWFW
Trigger: CCAGAACCACCCCAGAGCTCACCCACCCCTGCCTTC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGGAAGGCAGGGGTGGGTaGGCTCTGGGGTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGEGRGG*ALGWFW
Trigger: CCAGAACCACCCCAGAGCTCACCCACCCCTGCCTTC...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGTTCTGGGGGTTGGGTaGCATCTGGGAGAGGAGATG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQVLGVG*HLGEEM
Trigger: CATCTCCTCTCCCAGATGTCACCCAACCCCCAGAAC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGCATAAGGACTaGCATCCAGGGGGCCCCTTG +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGPGHKD*HPGGPL
Trigger: CAAGGGGCCCCCTGGATGGCAGTCCTTATGCCCAGG...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAGAATACATCCCAAGGTaGAGGCCTCCACCCACAGAG +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGEYIPR*RPPPTE
Trigger: CTCTGTGGGTGGAGGCCTGCACCTTGGGATGTATTC...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCAGGCCTCACTGGGTaGAGGAGAGGCTTGCCTACC +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGPGLTG*RRGLPT
Trigger: GGTAGGCAAGCCTCTCCTGCACCCAGTGAGGCCTGG...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACCAGGCCTCACTGGGTaGAGGAGAGGCTTGCCTACC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGPGLTG*RRGLPT
Trigger: GGTAGGCAAGCCTCTCCTGCACCCAGTGAGGCCTGG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAGCAGGGTACCCTGAATaGCCATACCTGCCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGAGYPE*PYLPSE
Trigger: CTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGC...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGTGTCTTGCCGTCGGTTaGTTTCCTTGCCCTGAACTG +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSECLAVG*FPCPEL
Trigger: CAGTTCAGGGCAAGGAAAGCAACCGACGGCAAGACA...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGGGCTAGGGTCCAGTTaGTCAGGCCTGCTGCTTGTC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWGLGSS*SGLLLV
Trigger: GACAAGCAGCAGGCCTGAGCAACTGGACCCTAGCCC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCTGGGCTATCTGAAGTaGCCCGAGGGCCCTGCCACG +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHLGYLK*PEGPAT
Trigger: CGTGGCAGGGCCCTCGGGGCACTTCAGATAGCCCAG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCTGGGTTGGTCCATCTaGGGTCCTGGGGGTCAGTGC +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGLGWSI*GPGGQC
Trigger: GCACTGACCCCCAGGACCGCAGATGGACCAACCCAG...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCACATTTTCTGTGTGTaGCCACCTTGCAGACTCGGC +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEHIFCV*PPCRLG
Trigger: GCCGAGTCTGCAAGGTGGCCACACACAGAAAATGTG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCAGGCCTCATCTAGTTaGTCCTTTGGGAAGGTGAGC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAQASSS*SFGKVS
Trigger: GCTCACCTTCCCAAAGGACCAACTAGATGAGGCCTG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAGTTAGCGTGGATGAGTaGCCAGAGTCGCTGCTGACA +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGVSVDE*PESLLT
Trigger: TGTCAGCAGCGACTCTGGCCACTCATCCACGCTAAC...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGCCATAGTCAGGCATTaGGGCATGATGATGCCCACA +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEAIVRH*GMMMPT
Trigger: TGTGGGCATCATCATGCCCCAATGCCTGACTATGGC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCCTGAGGCCAGCCATTaGGTGAGCCGGGTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHPEASH*VSRVQR
Trigger: CCTCTGCACCCGGCTCACCCAATGGCTGGCCTCAGG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCTAGCACTGTTGGTGTaGCCTCCTGGGCTCCTTTCC +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQLALLV*PPGLLS
Trigger: GGAAAGGAGCCCAGGAGGCCACACCAACAGTGCTAG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTCCAGGCAGGGTGGTTaGCACAGGGCTCCGAGGACT +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGSRQGG*HRAPRT
Trigger: AGTCCTCGGAGCCCTGTGCCAACCACCCTGCCTGGA...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGGTGGGTGAGCTCTaGGGTGGTTCTGGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDGVGEL*GGSGLP
Trigger: GGGCAGCCCAGAACCACCCCAGAGCTCACCCACCCC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCGGGTTGGGTGACATCTaGGAGAGGAGATGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPGLGDI*ERRCKG
Trigger: ACCTTTGCATCTCCTCTCCCAGATGTCACCCAACCC...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGGGCTGCGCACTGGGTaGAGGTGTAGCCACCTTGAG +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGGLRTG*RCSHLE
Trigger: CTCAAGGTGGCTACACCTCCACCCAGTGCGCAGCCC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTCTCGATGAGGAAATaGCGGACCAGCTGTTCTGAG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAVSMRK*RTSCSE
Trigger: CTCAGAACAGCTGGTCCGCCATTTCCTCATCGAGAC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGACAATGGCTGGCACTaGGACCGGGCTGCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGDNGWH*DRAAAQ
Trigger: CTGAGCTGCAGCCCGGTCCCAGTGCCAGCCATTGTC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGCTGAGACCTTGAAATaGACAATGGCTGGCACTGGG +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEAETLK*TMAGTG
Trigger: CCCAGTGCCAGCCATTGTCCATTTCAAGGTCTCAGC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCAAAGATCTTGGAGGTaGCTCCATCTGGGTTGGTCC +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEQRSWR*LHLGWS
Trigger: GGACCAACCCAGATGGAGCCACCTCCAAGATCTTTG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTTTCCCAGGGACTTCCTaGCTTCTTGGCCACGAAACC +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCFPGTS*LLGHET
Trigger: GGTTTCGTGGCCAAGAAGCCAGGAAGTCCCTGGGAA...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATTTCCTCGGCTGCGGGTaGGATGACAGACAAATAGGG +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDFLGCG*DDRQIG
Trigger: CCCTATTTGTCTGTCATCCCACCCGCAGCCGAGGAA...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCTCCTCCCCAGGGCTCTaGGCAACCTTTCCACAGGGC +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLSSPGL*ATFPQG
Trigger: GCCCTGTGGAAAGGTTGCTCAGAGCCCTGGGGAGGA...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR TCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGCAGGGGGCAAGGCCTaGCAGGATGAAGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRAGGKA*QDEVTF
Trigger: AAAGGTGACTTCATCCTGTCAGGCCTTGCCCCCTGC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATTCTCTGTGCTTGGATTaGAGCACATGGGCTAGCTCG +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDSLCLD*STWASS
Trigger: CGAGCTAGCCCATGTGCTTCAATCCAAGCACAGAGA...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAAACACAACCACGTGCTaGGGGTCGGCACTGAGCCAC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGNTTTC*GSALSH
Trigger: GTGGCTCAGTGCCGACCCTCAGCACGTGGTTGTGTT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGGCTGCTGTTCATTCTaGTGGAGCCAGACAGCAGTC +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQGCCSF*WSQTAV
Trigger: GACTGCTGTCTGGCTCCATCAGAATGAACAGCAGCC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGGGCTGGCTCCAGGCTaGTACAAAGTTGCTGAGGCC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGGLAPG*YKVAEA
Trigger: GGCCTCAGCAACTTTGTATCAGCCTGGAGCCAGCCC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGGGCTGGCTCCAGGCTaGTACAAAGTTGCTGAGGCC +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGGLAPG*YKVAEA
Trigger: GGCCTCAGCAACTTTGTATCAGCCTGGAGCCAGCCC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCAGGACTCAGTCTCTaGGTGGGTGCCAAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGPGLSL*VGAKEG
Trigger: TCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGG...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCTGAGGGCCAGTCAATaGCTCTGTCTCCACCGAGGT +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRLRASQ*LCLHRG
Trigger: ACCTCGGTGGAGACAGAGTCATTGACTGGCCCTCAG...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGCCTTGGCCACAGCCTaGGGGCCAGTCAATGACTCT +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGALATA*GPVNDS
Trigger: AGAGTCATTGACTGGCCCTCAGGCTGTGGCCAAGGC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATTGGCCTCGGTGTCGCTaGTCGTCCGGTCGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDWPRCR*SSGRAG
Trigger: TCCTGCACGACCGGACGAGCAGCGACACCGAGGCCA...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGCTGAGGCCCTGGACCTaGTATGCGGTAGACTCCAGA +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWLRPWT*YAVDSR
Trigger: TCTGGAGTCTACCGCATAGCAGGTCCAGGGCCTCAG...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAAAGCTCTGGAGAAGGTaGTGGTGGTGTCTGGCGGGG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGKLWRR*WWCLAG
Trigger: CCCCGCCAGACACCACCAGCACCTTCTCCAGAGCTT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCTCCACAGAGGCTTCTaGGTAGCCCTGGGGGTGTCC +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLLHRGF*VALGVS
Trigger: GGACACCCCCAGGGCTACGCAGAAGCCTCTGTGGAG...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCACCTCCCGGTAGCCTaGTGGACGGTAGCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGHLPVA*WTVAKV
Trigger: GACTTTGGCTACCGTCCAGCAGGCTACCGGGAGGTG...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACAGTCCATACAGGGCTaGGGTGGGCAGTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGQSIQG*GGQCQL
Trigger: AAGCTGGCACTGCCCACCGCAGCCCTGTATGGACTG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCAGGCCTCACTGGGTaGAGGAGAGGCTTGCCTACC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGPGLTG*RRGLPT
Trigger: GGTAGGCAAGCCTCTCCTGCACCCAGTGAGGCCTGG...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGATCCGCAACTGTGAGGTaGCCGGCCATATGCTGGGCA +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGSATVR*PAICWA
Trigger: TGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGA...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGTCTTGCCGTCGGTTaGTTTCCTTGCCCTGAACTG +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGCLAVG*FPCPEL
Trigger: CAGTTCAGGGCAAGGAAAGCAACCGACGGCAAGACA...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGGGGTGGTTCTGGGCTaGCCACAAGCCAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLGVVLG*PQARAS
Trigger: AGATGCCCTGGCTTGTGGGCAGCCCAGAACCACCCC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGATGGGAGAGATGGAGTaGTGGGAGACCAGGGCAGAC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWMGEME*WETRAD
Trigger: GTCTGCCCTGGTCTCCCAGCACTCCATCTCTCCCAT...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTTTGACGCAGGAGGTCTaGTGCTGTGCTCATGTTGGT +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCLTQEV*CCAHVG
Trigger: ACCAACATGAGCACAGCAGCAGACCTCCTGCGTCAA...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCTGGGTTGGTCCATCTaGGGTCCTGGGGGTCAGTGC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHLGWSI*GPGGQC
Trigger: GCACTGACCCCCAGGACCGCAGATGGACCAACCCAG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGCTTTCCTCGGCCTGCTaGTGGCCCGGCTGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGLSSAC*WPGCCP
Trigger: GGGACAGCAGCCGGGCCACCAGCAGGCCGAGGAAAG...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR CCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCCTGCGTTGCTTTGAGTaGTTCAGAGACTTGGTGGAC +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPLRCFE*FRDLVD
Trigger: GTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAG...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATAGGGTTGCCAGCGCCTaGTCTGCCCCTGCAGAGATC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHRVASA*SAPAEI
Trigger: GATCTCTGCAGGGGCAGACCAGGCGCTGGCAACCCT...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGAGGGTTGCCAGCGCCTaGTCTGCCCCTGCAGAGATC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGRVASA*SAPAEI
Trigger: GATCTCTGCAGGGGCAGACCAGGCGCTGGCAACCCT...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGAGGGCTGCAGTTCCGTaGCCACCTTGTCCTCACAGA +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRRAAVP*PPCPHR
Trigger: TCTGTGAGGACAAGGTGGCCACGGAACTGCAGCCCT...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGCTGGAAGCCTGTGTTaGGCTCAAAGGCTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWAGSLC*AQRLAA
Trigger: TGCTGCCAGCCTTTGAGCCCAACACAGGCTTCCAGC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATATCTTGAGGAAGGGCTaGAAGCCTGTGTTGGGCTCA +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDILRKG*KPVLGS
Trigger: TGAGCCCAACACAGGCTTCCAGCCCTTCCTCAAGAT...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTTTTGAGGAGAAGGGCTaGCTCCAGGCTGATACAAAG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAFEEKG*LQADTK
Trigger: CTTTGTATCAGCCTGGAGCCAGCCCTTCTCCTCAAA...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGTTTGAGGAGAAGGGCTaGCTCCAGGCTGATACAAAG +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEFEEKG*LQADTK
Trigger: CTTTGTATCAGCCTGGAGCCAGCCCTTCTCCTCAAA...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGCCATAGTCAGGCATTaGGGCATGATGATGCCCACA +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCAIVRH*GMMMPT
Trigger: TGTGGGCATCATCATGCCCCAATGCCTGACTATGGC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGATGCTGGGCAGTAGCTaGGAACCGCTCCTCCATAGC +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRMLGSS*EPLLHS
Trigger: GCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCAT...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGTGCCCGGCCATATGCTaGGCAGTAGCTGGGAACCGC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGCPAIC*AVAGNR
Trigger: GCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCA...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGCGTGCTGTGTCCACTaGAGCCATCCCTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGACCVH*SHPSRM
Trigger: CATCCTGGAGGGATGGCTCCAGTGGACACAGCACGC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGCTAGCACTGTTGGTGTaGCCTCCTGGGCTCCTTTCC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWLALLV*PPGLLS
Trigger: GGAAAGGAGCCCAGGAGGCCACACCAACAGTGCTAG...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGTCCAGGCAGGGTGGTTaGCACAGGGCTCCGAGGACT +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGSRQGG*HRAPRT
Trigger: AGTCCTCGGAGCCCTGTGCCAACCACCCTGCCTGGA...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGAAGTCCAGGCAGGGTaGTTGGCACAGGGCTCCGAG +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLEVQAG*LAQGSE
Trigger: CTCGGAGCCCTGTGCCAACCACCCTGCCTGGACTTC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAACAAGCCAGGGCATCTaGGTAGGCACAGGAGTAAGA +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGTSQGI*VGTGVR
Trigger: TCTTACTCCTGTGCCTACCCAGATGCCCTGGCTTGT...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGGTTGGGTGACATCTaGGAGAGGAGATGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCGLGDI*ERRCKG
Trigger: ACCTTTGCATCTCCTCTCCCAGATGTCACCCAACCC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGACAATGGCTGGCACTaGGACCGGGCTGCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHDNGWH*DRAAAQ
Trigger: CTGAGCTGCAGCCCGGTCCCAGTGCCAGCCATTGTC...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGGAGGTGGCTCCATCTaGGTTGGTCCATCTGCGGTC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGGGGSI*VGPSAV
Trigger: GACCGCAGATGGACCAACCCAGATGGAGCCACCTCC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCAAAGATCTTGGAGGTaGCTCCATCTGGGTTGGTCC +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDQRSWR*LHLGWS
Trigger: GGACCAACCCAGATGGAGCCACCTCCAAGATCTTTG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCCGAAACCAAAGATCTTaGAGGTGGCTCCATCTGGGT +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPRNQRS*RWLHLG
Trigger: ACCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCG...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCTCCCGGAAGCTGTGTaGTTCTGCTTTCCTCGGCTG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRLPEAV*FCFPRL
Trigger: CAGCCGAGGAAAGCAGAACCACACAGCTTCCGGGAG...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGCAGGGGGCAAGGCCTaGCAGGATGAAGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGAGGKA*QDEVTF
Trigger: AAAGGTGACTTCATCCTGTCAGGCCTTGCCCCCTGC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGAGTACTGCGTTGCTTTaGGTGGTTCAGAGACTTGGT +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSESTALL*VVQRLG
Trigger: ACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATAACACAACCACGTGCTaGGGGTCGGCACTGAGCCAC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHNTTTC*GSALSH
Trigger: GTGGCTCAGTGCCGACCCTCAGCACGTGGTTGTGTT...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGGCTGCTGTTCATTCTaGTGGAGCCAGACAGCAGTC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWGCCSF*WSQTAV
Trigger: GACTGCTGTCTGGCTCCATCAGAATGAACAGCAGCC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGAAAACAAACTCCACTaGGGCTTGGAAAGGAAACCG +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAENKLH*GLERKP
Trigger: CGGTTTCCTTTCCAAGCCTCAGTGGAGTTTGTTTTC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGTGGGGTGTTGCCTTTaGCCTTCTCAGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLVGCCL*PSQGWR
Trigger: CCTCCAGCCCTGAGAAGGTCAAAGGCAACACCCCAC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGGTGGGGTGTTGCCTTTaGCCTTCTCAGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGVGCCL*PSQGWR
Trigger: CCTCCAGCCCTGAGAAGGTCAAAGGCAACACCCCAC...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTCCTCATGGTGCTGATTaGAGTTTTCATAGGAGTCCC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAPHGAD*SFHRSP
Trigger: GGGACTCCTATGAAAACTTCAATCAGCACCATGAGG...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGGCCAGAGTCGCTGCTaGCAGAGAGCATCGGGGGTG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGGQSRC*QRASGV
Trigger: CACCCCCGATGCTCTCTGTCAGCAGCGACTCTGGCC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGGGCCAGAGTCGCTGCTaGCAGAGAGCATCGGGGGTG +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGGQSRC*QRASGV
Trigger: CACCCCCGATGCTCTCTGTCAGCAGCGACTCTGGCC...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCAGGAGCAGCGTCGACTaGGTCCAGGCCTGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGRSSVD*VQACGL
Trigger: CAGGCCACAGGCCTGGACTCAGTCGACGCTGCTCCT...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGGCCATCTGGGCTATCTaGAGTGCCCCGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGAIWAI*SAPRAL
Trigger: CAGGGCCCTCGGGGCACTTCAGATAGCCCAGATGGC...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGCCATCTGGGCTATCTaGAGTGCCCCGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGAIWAI*SAPRAL
Trigger: CAGGGCCCTCGGGGCACTTCAGATAGCCCAGATGGC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGTGGGCCCAGTCTCGATaGGGAAATGGCGGACCAGCT +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGWAQSR*GNGGPA
Trigger: AGCTGGTCCGCCATTTCCTCATCGAGACTGGGCCCA...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGCCTTGGCCACAGCCTaGGGGCCAGTCAATGACTCT +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLALATA*GPVNDS
Trigger: AGAGTCATTGACTGGCCCTCAGGCTGTGGCCAAGGC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCGGTAGAGTACTGCGTTaGTTTGAGTGGTTCAGAGAC +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPGRVLR*FEWFRD
Trigger: GTCTCTGAACCACTCAAAGCAACGCAGTACTCTACC...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCTCCTGGGTAGAGTACTaGGTTGCTTTGAGTGGTTCA +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPSWVEY*VALSGS
Trigger: TGAACCACTCAAAGCAACGCAGTACTCTACCCAGGA...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGAGGCGGGTGAGGTCATaGCGTTTCTCTGAAAGGTTG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQRRVRS*RFSERL
Trigger: CAACCTTTCAGAGAAACGGCATGACCTCACCCGCCT...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGAATACATCCCAAGGTaGAGGCCTCCACCCACAGAG +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWEYIPR*RPPPTE
Trigger: CTCTGTGGGTGGAGGCCTGCACCTTGGGATGTATTC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCACCTCCCGGTAGCCTaGTGGACGGTAGCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHHLPVA*WTVAKV
Trigger: GACTTTGGCTACCGTCCAGCAGGCTACCGGGAGGTG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCAGTCCATACAGGGCTaGGGTGGGCAGTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGQSIQG*GGQCQL
Trigger: AAGCTGGCACTGCCCACCGCAGCCCTGTATGGACTG...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACAGTCTCTGAGTGGGTaGCAAGGAGGGAGACCTGGT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGQSLSG*QGGRPG
Trigger: ACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGGGGCTAGGGTCCAGTTaGTCAGGCCTGCTGCTTGTC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGGLGSS*SGLLLV
Trigger: GACAAGCAGCAGGCCTGAGCAACTGGACCCTAGCCC...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATTCCCCTTTCCAGGGCTaGGCACTGGGTGGAGGTGTA +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHSPFQG*ALGGGV
Trigger: TACACCTCCACCCAGTGCGCAGCCCTGGAAAGGGGA...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACGCAGGAGGTCTGCTaGTGTGCTCATGTTGGTAGG +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWTQEVC*CAHVGR
Trigger: CCTACCAACATGAGCACAGCAGCAGACCTCCTGCGT...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACTGCGTTGCTTTGAGTaGTTCAGAGACTTGGTGGAC +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGLRCFE*FRDLVD
Trigger: GTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAG...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCTGCGTTGCTTTGAGTaGTTCAGAGACTTGGTGGAC +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDLRCFE*FRDLVD
Trigger: GTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGTTAGCGTGGATGAGTaGCCAGAGTCGCTGCTGACA +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRVSVDE*PESLLT
Trigger: TGTCAGCAGCGACTCTGGCCACTCATCCACGCTAAC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCCACCACGGCCCGCACTaGCCACTCCACAACCTCCCA +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGHHGPH*PLHNLP
Trigger: TGGGAGGTTGTGGAGTGGCCAGTGCGGGCCGTGGTG...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATCTCCCGGTAGCCTGCTaGACGGTAGCCAAAGTCCCC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDLPVAC*TVAKVP
Trigger: GGGGACTTTGGCTACCGTCCAGCAGGCTACCGGGAG...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAATGCTGGGCAGTAGCTaGGAACCGCTCCTCCATAGC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGMLGSS*EPLLHS
Trigger: GCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCAT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGTTGGTGTGGCCTCCTaGGCTCCTTTCCTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLVGVAS*APFLRP
Trigger: TGGCCTCAGGAAAGGAGCCCAGGAGGCCACACCAAC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGCTCTGGGGTGGTTCTaGGCTGCCCACAAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGALGWF*AAHKPG
Trigger: CCCTGGCTTGTGGGCAGCCCAGAACCACCCCAGAGC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGCTGAGACCTTGAAATaGACAATGGCTGGCACTGGG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQAETLK*TMAGTG
Trigger: CCCAGTGCCAGCCATTGTCCATTTCAAGGTCTCAGC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACGAAACCAAAGATCTTaGAGGTGGCTCCATCTGGGT +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGRNQRS*RWLHLG
Trigger: ACCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCG...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCAAGGCCTGACAGGATaGAGTCACCTTTGCTTCACA +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQQGLTG*SHLCFT
Trigger: TGTGAAGCAAAGGTGACTTCATCCTGTCAGGCCTTG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTTTCTCTGAAAGGTTaGAGAGCAGGTACTTGTCTC +
Preference number: 4 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAVSLKG*RAGTCL
Trigger: GAGACAAGTACCTGCTCTTCAACCTTTCAGAGAAAC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGGCTGCTGTTCATTCTaGTGGAGCCAGACAGCAGTC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGGCCSF*WSQTAV
Trigger: GACTGCTGTCTGGCTCCATCAGAATGAACAGCAGCC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGGTCCTTTGGGAAGGTaGGCCGTGATCCATGAATGG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGGPLGR*AVIHEW
Trigger: CCATTCATGGATCACGGCTCACCTTCCCAAAGGACC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGGTCCTTTGGGAAGGTaGGCCGTGATCCATGAATGG +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGGPLGR*AVIHEW
Trigger: CCATTCATGGATCACGGCTCACCTTCCCAAAGGACC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGAAGAAGCACTGCACTaGGGATCTCGGGGAGACCGA +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLEEALH*GSRGDR
Trigger: TCGGTCTCCCCGAGATCCTCAGTGCAGTGCTTCTTC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGAAGAAGCACTGCACTaGGGATCTCGGGGAGACCGA +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHEEALH*GSRGDR
Trigger: TCGGTCTCCCCGAGATCCTCAGTGCAGTGCTTCTTC...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGGTTGTCTGTCAGTGTaGTGCCTTGAGCTGAGACCT +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWGCLSV*CLELRP
Trigger: AGGTCTCAGCTCAAGGCATCACACTGACAGACAACC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGGTTGTCTGTCAGTGTaGTGCCTTGAGCTGAGACCT +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRGCLSV*CLELRP
Trigger: AGGTCTCAGCTCAAGGCATCACACTGACAGACAACC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGAAGCTGTGTGGTTCTaGTTTCCTCGGCCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGEAVWF*FPRPAG
Trigger: ACCAGCAGGCCGAGGAAAGCAGAACCACACAGCTTC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR GCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGTAGAGTACTGCGTTaGTTTGAGTGGTTCAGAGAC +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCGRVLR*FEWFRD
Trigger: GTCTCTGAACCACTCAAAGCAACGCAGTACTCTACC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGCTCCACAGAGGCTTCTaGGTAGCCCTGGGGGTGTCC +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGLHRGF*VALGVS
Trigger: GGACACCCCCAGGGCTACGCAGAAGCCTCTGTGGAG...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGCAGGGTACCCTGAATaGCCATACCTGCCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGAGYPE*PYLPSE
Trigger: CTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGTCGGTTGCTTTCCTTaGCCTGAACTGGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHVGCFP*PELGCW
Trigger: CCAGCAGCCCAGTTCAGGGCAAGGAAAGCAACCGAC...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGTCGGTTGCTTTCCTTaGCCTGAACTGGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLVGCFP*PELGCW
Trigger: CCAGCAGCCCAGTTCAGGGCAAGGAAAGCAACCGAC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATTCCCCTTTCCAGGGCTaGGCACTGGGTGGAGGTGTA +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDSPFQG*ALGGGV
Trigger: TACACCTCCACCCAGTGCGCAGCCCTGGAAAGGGGA...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTCCCGGAAGCTGTGTaGTTCTGCTTTCCTCGGCCT +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGLPEAV*FCFPRP
Trigger: AGGCCGAGGAAAGCAGAACCACACAGCTTCCGGGAG...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACACCGGTCCCATCGATaGTCACCTTACACACTGCAC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGHRSHR*SPYTLH
Trigger: GTGCAGTGTGTAAGGTGACCATCGATGGGACCGGTG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGGTTCAGAGACTTGGTaGACCCCAGGTGTTCTATGC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWGSETW*TPGVLC
Trigger: GCATAGAACACCTGGGGTCCACCAAGTCTCTGAACC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGACTTGTCTCTGTGCTTaGATTGAAGCACATGGGCTA +
Preference number: 4 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSETCLCA*IEAHGL
Trigger: TAGCCCATGTGCTTCAATCCAAGCACAGAGACAAGT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGATCTTGAGGAAGGGCTaGAAGCCTGTGTTGGGCTCA +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWILRKG*KPVLGS
Trigger: TGAGCCCAACACAGGCTTCCAGCCCTTCCTCAAGAT...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGCCGTGATCCATGAATaGTGCATGTGTGGAACTGAA +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCAVIHE*CMCGTE
Trigger: TTCAGTTCCACACATGCACCATTCATGGATCACGGC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATAACTCCACTGAGGCTTaGAAAGGAAACCGCTCATCA +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDNSTEA*KGNRSS
Trigger: TGATGAGCGGTTTCCTTTCCAAGCCTCAGTGGAGTT...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCAAAGTCCCCATTGGCTaGTTTCCCCAGCTCGGGTGC +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLKVPIG*FPQLGC
Trigger: GCACCCGAGCTGGGGAAACCAGCCAATGGGGACTTT...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGCTCCCGGTAGCCTGCTaGACGGTAGCCAAAGTCCCC +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGLPVAC*TVAKVP
Trigger: GGGGACTTTGGCTACCGTCCAGCAGGCTACCGGGAG...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATCACCAGCAGAGGCAATaGGTGTCCAGGCCTCACTGG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDHQQRQ*VSRPHW
Trigger: CCAGTGAGGCCTGGACACCCATTGCCTCTGCTGGTG...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTCACCCACCTTGGGTaGCTTCAGGCAGCCATAGTC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGLTHLG*LQAAIV
Trigger: GACTATGGCTGCCTGAAGCCACCCAAGGTGGGTGAG...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCTCACCCACCTTGGGTaGCTTCAGGCAGCCATAGTC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHLTHLG*LQAAIV
Trigger: GACTATGGCTGCCTGAAGCCACCCAAGGTGGGTGAG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGCGTGCTGTGTCCACTaGAGCCATCCCTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDACCVH*SHPSRM
Trigger: CATCCTGGAGGGATGGCTCCAGTGGACACAGCACGC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATCCAAGGAGGGAGACCTaGTGGTGTCTTGCCGTCGGT +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDPRRET*WCLAVG
Trigger: ACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGG...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCTAGCACTGTTGGTGTaGCCTCCTGGGCTCCTTTCC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHLALLV*PPGLLS
Trigger: GGAAAGGAGCCCAGGAGGCCACACCAACAGTGCTAG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGACAAGCCAGGGCATCTaGGTAGGCACAGGAGTAAGA +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRTSQGI*VGTGVR
Trigger: TCTTACTCCTGTGCCTACCCAGATGCCCTGGCTTGT...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGTCTCGATGAGGAAATaGCGGACCAGCTGTTCTGAG +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWVSMRK*RTSCSE
Trigger: CTCAGAACAGCTGGTCCGCCATTTCCTCATCGAGAC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATTCAGAGCTGCAGAGCTaGCCTTGGCCACAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDSELQS*PWPQPE
Trigger: CTCAGGCTGTGGCCAAGGCCAGCTCTGCAGCTCTGA...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCGAAACCAAAGATCTTaGAGGTGGCTCCATCTGGGT +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQRNQRS*RWLHLG
Trigger: ACCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGATTCCCAGGGACTTCCTaGCTTCTTGGCCACGAAACC +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGFPGTS*LLGHET
Trigger: GGTTTCGTGGCCAAGAAGCCAGGAAGTCCCTGGGAA...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGATCTCTGTGCTTGGATTaGAGCACATGGGCTAGCTCG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGSLCLD*STWASS
Trigger: CGAGCTAGCCCATGTGCTTCAATCCAAGCACAGAGA...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGTCATGCCGTTTCTCTaGAAGGTTGAAGAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQVMPFL*KVEEQV
Trigger: TACCTGCTCTTCAACCTTTCAGAGAAACGGCATGAC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGTATAAGCAGAGACGATaGCCCCAAGCTTGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWYKQRR*PQACLC
Trigger: GCAAAGGCAAGCTTGGGGTCATCGTCTCTGCTTATA...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGTTCTGGGGGTTGGGTaGCATCTGGGAGAGGAGATG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDVLGVG*HLGEEM
Trigger: CATCTCCTCTCCCAGATGTCACCCAACCCCCAGAAC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGTCAGTGTGATGCCTTaGGCTGAGACCTTGAAATGG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRVSVMP*AETLKW
Trigger: CCATTTCAAGGTCTCAGCTCAAGGCATCACACTGAC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGTCAGTGTGATGCCTTaGGCTGAGACCTTGAAATGG +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWVSVMP*AETLKW
Trigger: CCATTTCAAGGTCTCAGCTCAAGGCATCACACTGAC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGGTTGTCTGTCAGTGTaGTGCCTTGAGCTGAGACCT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGGCLSV*CLELRP
Trigger: AGGTCTCAGCTCAAGGCATCACACTGACAGACAACC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGTCACCTTACACACTaGACACACTGGAGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCGHLTH*THWSFL
Trigger: AAGAAAACTCCAGTGTGTGCAGTGTGTAAGGTGACC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATACGTCTCCATGGCTTTaGAGATGGAACACAACTTGT +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDTSPWL*RWNTTC
Trigger: ACAAGTTGTGTTCCATCTGCAAAGCCATGGAGACGT...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCCCCTGCAGAGATCTTaGTGTAGTGCATATAAGCAG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQPLQRS*CSAYKQ
Trigger: CTGCTTATATGCACTACAGCAAGATCTCTGCAGGGG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATCGCCTGGTCTGCCCCTaGAGAGATCTTGCTGTAGTG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDRLVCP*RDLAVV
Trigger: CACTACAGCAAGATCTCTGCAGGGGCAGACCAGGCG...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCTGCCAGCGCCTGGTCTaGCCCTGCAGAGATCTTGCT +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGCQRLV*PCRDLA
Trigger: AGCAAGATCTCTGCAGGGGCAGACCAGGCGCTGGCA...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGAATACATCCCAAGGTaGAGGCCTCCACCCACAGAG +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLEYIPR*RPPPTE
Trigger: CTCTGTGGGTGGAGGCCTGCACCTTGGGATGTATTC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGCAGGGTACCCTGAATaGCCATACCTGCCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHAGYPE*PYLPSE
Trigger: CTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGC...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCCAGTTGCTCAGGCCTaGTGCTTGTCAACAGCTCAG +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLPVAQA*CLSTAQ
Trigger: CTGAGCTGTTGACAAGCAGCAGGCCTGAGCAACTGG...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCTCCCCTTTCCAGGGCTaGGCACTGGGTGGAGGTGTA +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGSPFQG*ALGGGV
Trigger: TACACCTCCACCCAGTGCGCAGCCCTGGAAAGGGGA...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATATGGGAGAGATGGAGTaGTGGGAGACCAGGGCAGAC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDMGEME*WETRAD
Trigger: GTCTGCCCTGGTCTCCCAGCACTCCATCTCTCCCAT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATACGCAGGAGGTCTGCTaGTGTGCTCATGTTGGTAGG +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHTQEVC*CAHVGR
Trigger: CCTACCAACATGAGCACAGCAGCAGACCTCCTGCGT...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCACCGGTCCCATCGATaGTCACCTTACACACTGCAC +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLHRSHR*SPYTLH
Trigger: GTGCAGTGTGTAAGGTGACCATCGATGGGACCGGTG...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGCCATGGCTTTGCAGATaGAACACAACTTGTCCAGAG +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQPWLCR*NTTCPE
Trigger: CTCTGGACAAGTTGTGTTCCATCTGCAAAGCCATGG...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATATAGTGCAGGAAGAGTaGGCTGCTGTTCATTCTGAT +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDIVQEE*AAVHSD
Trigger: ATCAGAATGAACAGCAGCCCACTCTTCCTGCACTAT...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATAAAGTCCCCATTGGCTaGTTTCCCCAGCTCGGGTGC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDKVPIG*FPQLGC
Trigger: GCACCCGAGCTGGGGAAACCAGCCAATGGGGACTTT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGCACCAGCAGAGGCAATaGGTGTCCAGGCCTCACTGG +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGHQQRQ*VSRPHW
Trigger: CCAGTGAGGCCTGGACACCCATTGCCTCTGCTGGTG...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATCTCACCCACCTTGGGTaGCTTCAGGCAGCCATAGTC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDLTHLG*LQAAIV
Trigger: GACTATGGCTGCCTGAAGCCACCCAAGGTGGGTGAG...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGCGTGCTGTGTCCACTaGAGCCATCCCTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGACCVH*SHPSRM
Trigger: CATCCTGGAGGGATGGCTCCAGTGGACACAGCACGC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTTCGTTTTTCAGGAAGTaGAGGCTGAATGGGACCATT +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCSFFRK*RLNGTI
Trigger: AATGGTCCCATTCAGCCTCCACTTCCTGAAAAACGA...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGTGTTCTGGGGGTTaGGTGACATCTGGGAGAGGA +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDGCSGG*VTSGRG
Trigger: TCCTCTCCCAGATGTCACCCAACCCCCAGAACACCC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATGCTCCTTGGAATGAATaGCTGTCTCTAATCAGGAAG +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDAPWNE*LSLIRK
Trigger: CTTCCTGATTAGAGACAGCCATTCATTCCAAGGAGC...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAGCTCCTTGGAATGAATaGCTGTCTCTAATCAGGAAG +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGAPWNE*LSLIRK
Trigger: CTTCCTGATTAGAGACAGCCATTCATTCCAAGGAGC...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGTCTCGATGAGGAAATaGCGGACCAGCTGTTCTGAG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGVSMRK*RTSCSE
Trigger: CTCAGAACAGCTGGTCCGCCATTTCCTCATCGAGAC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGGGAGGTGGCTCCATCTaGGTTGGTCCATCTGCGGTC +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGGGGSI*VGPSAV
Trigger: GACCGCAGATGGACCAACCCAGATGGAGCCACCTCC...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACAAGGCCTGACAGGATaGAGTCACCTTTGCTTCACA +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGQGLTG*SHLCFT
Trigger: TGTGAAGCAAAGGTGACTTCATCCTGTCAGGCCTTG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCAAGGCCTGACAGGATaGAGTCACCTTTGCTTCACA +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGQGLTG*SHLCFT
Trigger: TGTGAAGCAAAGGTGACTTCATCCTGTCAGGCCTTG...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGTTTCTCTGAAAGGTTaGAGAGCAGGTACTTGTCTC +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQVSLKG*RAGTCL
Trigger: GAGACAAGTACCTGCTCTTCAACCTTTCAGAGAAAC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTATAAGCAGAGACGATaGCCCCAAGCTTGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGYKQRR*PQACLC
Trigger: GCAAAGGCAAGCTTGGGGTCATCGTCTCTGCTTATA...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGTGCATGTGTGGAACTaGACTCGGAACACGAGGGTC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDVHVWN*TRNTRV
Trigger: GACCCTCGTGTTCCGAGTTCAGTTCCACACATGCAC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGGAAGAAGCACTGCACTaGGGATCTCGGGGAGACCGA +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGEEALH*GSRGDR
Trigger: TCGGTCTCCCCGAGATCCTCAGTGCAGTGCTTCTTC...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGGAGGAGATGCAAAGGTaGCATGTTGATTGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWEEMQR*HVDWCF
Trigger: GAAGCACCAATCAACATGTCACCTTTGCATCTCCTC...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGTTCTGGGGGTTGGGTaGCATCTGGGAGAGGAGATG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGVLGVG*HLGEEM
Trigger: CATCTCCTCTCCCAGATGTCACCCAACCCCCAGAAC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCTATCCTGGACAAACTTaGCATTGCTTTGGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPYPGQT*HCFGSL
Trigger: AAGAGAACCAAAGCAATGTCAAGTTTGTCCAGGATA...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCCTGAGGGCCAGTCAATaGCTCTGTCTCCACCGAGGT +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGLRASQ*LCLHRG
Trigger: ACCTCGGTGGAGACAGAGTCATTGACTGGCCCTCAG...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGGTAGAGTACTGCGTTaGTTTGAGTGGTTCAGAGAC +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRGRVLR*FEWFRD
Trigger: GTCTCTGAACCACTCAAAGCAACGCAGTACTCTACC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGTCCTGGGTAGAGTACTaGGTTGCTTTGAGTGGTTCA +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRSWVEY*VALSGS
Trigger: TGAACCACTCAAAGCAACGCAGTACTCTACCCAGGA...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGTCGTGCAGGAAAAGCTaGGGCCAAGATCCGCTCCGT +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGSCRKS*GQDPLR
Trigger: ACGGAGCGGATCTTGGCCGCAGCTTTTCCTGCACGA...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGAGGCGGGTGAGGTCATaGCGTTTCTCTGAAAGGTTG +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGRRVRS*RFSERL
Trigger: CAACCTTTCAGAGAAACGGCATGACCTCACCCGCCT...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGCTCTGAAGAAGCACTaGACTGAGGATCTCGGGGAG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDALKKH*TEDLGE
Trigger: CTCCCCGAGATCCTCAGTGCAGTGCTTCTTCAGAGC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCCAGTCTCTGAGTGGGTaGCAAGGAGGGAGACCTGGT +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGQSLSG*QGGRPG
Trigger: ACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTG...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATTTGACGCAGGAGGTCTaGTGCTGTGCTCATGTTGGT +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHLTQEV*CCAHVG
Trigger: ACCAACATGAGCACAGCAGCAGACCTCCTGCGTCAA...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCTTGACGCAGGAGGTCTaGTGCTGTGCTCATGTTGGT +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLLTQEV*CCAHVG
Trigger: ACCAACATGAGCACAGCAGCAGACCTCCTGCGTCAA...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCACATTTTCTGTGTGTaGCCACCTTGCAGACTCGGC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHHIFCV*PPCRLG
Trigger: GCCGAGTCTGCAAGGTGGCCACACACAGAAAATGTG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCAGGGCTGCAGTTCCGTaGCCACCTTGTCCTCACAGA +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGRAAVP*PPCPHR
Trigger: TCTGTGAGGACAAGGTGGCCACGGAACTGCAGCCCT...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCATCTTGAGGAAGGGCTaGAAGCCTGTGTTGGGCTCA +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLILRKG*KPVLGS
Trigger: TGAGCCCAACACAGGCTTCCAGCCCTTCCTCAAGAT...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGGCCATAGTCAGGCATTaGGGCATGATGATGCCCACA +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGAIVRH*GMMMPT
Trigger: TGTGGGCATCATCATGCCCCAATGCCTGACTATGGC...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGATGCTGGGCAGTAGCTaGGAACCGCTCCTCCATAGC +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGMLGSS*EPLLHS
Trigger: GCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCAT...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCCATAACCCAGCTTCCTaGGCTGCAGGTAGGGTGGAC +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGHNPAS*AAGRVD
Trigger: GTCCACCCTACCTGCAGCCCAGGAAGCTGGGTTATG...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCCCTGAACTGGGCTGCTaGTGTGTAAGGGTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGPELGC*CVRVWR
Trigger: CCTCCACACCCTTACACACCAGCAGCCCAGTTCAGG...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGGGTTGGGTGACATCTaGGAGAGGAGATGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHGLGDI*ERRCKG
Trigger: ACCTTTGCATCTCCTCTCCCAGATGTCACCCAACCC...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCAAAGATCTTGGAGGTaGCTCCATCTGGGTTGGTCC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHQRSWR*LHLGWS
Trigger: GGACCAACCCAGATGGAGCCACCTCCAAGATCTTTG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATTTCCCAGGGACTTCCTaGCTTCTTGGCCACGAAACC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDFPGTS*LLGHET
Trigger: GGTTTCGTGGCCAAGAAGCCAGGAAGTCCCTGGGAA...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAAGTACTGCGTTGCTTTaGGTGGTTCAGAGACTTGGT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGSTALL*VVQRLG
Trigger: ACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATCTGATACAAAGTTGCTaGGGCCCTGGACCTGCTATG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDLIQSC*GPGPAM
Trigger: CATAGCAGGTCCAGGGCCTCAGCAACTTTGTATCAG...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGTGCATGTGTGGAACTaGACTCGGAACACGAGGGTC +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGVHVWN*TRNTRV
Trigger: GACCCTCGTGTTCCGAGTTCAGTTCCACACATGCAC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGGTCCTTTGGGAAGGTaGGCCGTGATCCATGAATGG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGGPLGR*AVIHEW
Trigger: CCATTCATGGATCACGGCTCACCTTCCCAAAGGACC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGAAAACAAACTCCACTaGGGCTTGGAAAGGAAACCG +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGENKLH*GLERKP
Trigger: CGGTTTCCTTTCCAAGCCTCAGTGGAGTTTGTTTTC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCTTGTACCAGAACTTTaGTGTATCCTGGACAAACTT +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDLVPEL*CILDKL
Trigger: AAGTTTGTCCAGGATACATCAAAGTTCTGGTACAAG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTCTTGTACCAGAACTTTaGTGTATCCTGGACAAACTT +
Preference number: 4 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCLVPEL*CILDKL
Trigger: AAGTTTGTCCAGGATACATCAAAGTTCTGGTACAAG...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGATAGGCTCCTTGGAATaGATGGCTGTCTCTAATCAG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRIGSLE*MAVSNQ
Trigger: CTGATTAGAGACAGCCATTCATTCCAAGGAGCCTAT...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGTCAGTGTGATGCCTTaGGCTGAGACCTTGAAATGG +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLVSVMP*AETLKW
Trigger: CCATTTCAAGGTCTCAGCTCAAGGCATCACACTGAC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACGTCTCCATGGCTTTaGAGATGGAACACAACTTGT +
Preference number: 4 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWTSPWL*RWNTTC
Trigger: ACAAGTTGTGTTCCATCTGCAAAGCCATGGAGACGT...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGTTCAGAGACTTGGTaGACCCCAGGTGTTCTATGC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDGSETW*TPGVLC
Trigger: GCATAGAACACCTGGGGTCCACCAAGTCTCTGAACC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGCCGTGATCCATGAATaGTGCATGTGTGGAACTGAA +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGAVIHE*CMCGTE
Trigger: TTCAGTTCCACACATGCACCATTCATGGATCACGGC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATCAGGCCTCATCTAGTTaGTCCTTTGGGAAGGTGAGC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDQASSS*SFGKVS
Trigger: GCTCACCTTCCCAAAGGACCAACTAGATGAGGCCTG...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAAACTCCACTGAGGCTTaGAAAGGAAACCGCTCATCA +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGNSTEA*KGNRSS
Trigger: TGATGAGCGGTTTCCTTTCCAAGCCTCAGTGGAGTT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGTTAGCGTGGATGAGTaGCCAGAGTCGCTGCTGACA +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGVSVDE*PESLLT
Trigger: TGTCAGCAGCGACTCTGGCCACTCATCCACGCTAAC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGACTTCCTGGCTTCTTaGCCACGAAACCAAAGATCT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGDFLAS*PRNQRS
Trigger: AGATCTTTGGTTTCGTGGCCAAGAAGCCAGGAAGTC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGGTCATGCCGTTTCTCTaGAAGGTTGAAGAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGVMPFL*KVEEQV
Trigger: TACCTGCTCTTCAACCTTTCAGAGAAACGGCATGAC...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCCTGATACAAAGTTGCTaGGGCCCTGGACCTGCTATG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGLIQSC*GPGPAM
Trigger: CATAGCAGGTCCAGGGCCTCAGCAACTTTGTATCAG...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCCTCATGGTGCTGATTaGAGTTTTCATAGGAGTCCC +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHPHGAD*SFHRSP
Trigger: GGGACTCCTATGAAAACTTCAATCAGCACCATGAGG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGTATCCTGGACAAACTTaGCATTGCTTTGGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQYPGQT*HCFGSL
Trigger: AAGAGAACCAAAGCAATGTCAAGTTTGTCCAGGATA...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCATAGGCTCCTTGGAATaGATGGCTGTCTCTAATCAG +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGIGSLE*MAVSNQ
Trigger: CTGATTAGAGACAGCCATTCATTCCAAGGAGCCTAT...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCAGGCGGGTGAGGTCATaGCGTTTCTCTGAAAGGTTG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGRRVRS*RFSERL
Trigger: CAACCTTTCAGAGAAACGGCATGACCTCACCCGCCT...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGGTTCAGAGACTTGGTaGACCCCAGGTGTTCTATGC +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGGSETW*TPGVLC
Trigger: GCATAGAACACCTGGGGTCCACCAAGTCTCTGAACC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCATGGCTTTGCAGATaGAACACAACTTGTCCAGAG +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGPWLCR*NTTCPE
Trigger: CTCTGGACAAGTTGTGTTCCATCTGCAAAGCCATGG...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATCCATGGCTTTGCAGATaGAACACAACTTGTCCAGAG +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHPWLCR*NTTCPE
Trigger: CTCTGGACAAGTTGTGTTCCATCTGCAAAGCCATGG...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAATAGTGCAGGAAGAGTaGGCTGCTGTTCATTCTGAT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGIVQEE*AAVHSD
Trigger: ATCAGAATGAACAGCAGCCCACTCTTCCTGCACTAT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGATCGTTTTTCAGGAAGTaGAGGCTGAATGGGACCATT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGSFFRK*RLNGTI
Trigger: AATGGTCCCATTCAGCCTCCACTTCCTGAAAAACGA...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGAAGAAGAGCTTTCTCTaGTTGTCTGTCAGTGTGATG +
Preference number: 4 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRKKSFL*LSVSVM
Trigger: CATCACACTGACAGACAACCAGAGAAAGCTCTTCTT...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGTATAAGCAGAGACGATaGCCCCAAGCTTGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGYKQRR*PQACLC
Trigger: GCAAAGGCAAGCTTGGGGTCATCGTCTCTGCTTATA...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGAGGAGATGCAAAGGTaGCATGTTGATTGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDEEMQR*HVDWCF
Trigger: GAAGCACCAATCAACATGTCACCTTTGCATCTCCTC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATTCCTGGGTAGAGTACTaGGTTGCTTTGAGTGGTTCA +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDSWVEY*VALSGS
Trigger: TGAACCACTCAAAGCAACGCAGTACTCTACCCAGGA...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGACGTCTCCATGGCTTTaGAGATGGAACACAACTTGT +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGTSPWL*RWNTTC
Trigger: ACAAGTTGTGTTCCATCTGCAAAGCCATGGAGACGT...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATCCCCTGCAGAGATCTTaGTGTAGTGCATATAAGCAG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDPLQRS*CSAYKQ
Trigger: CTGCTTATATGCACTACAGCAAGATCTCTGCAGGGG...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAATCTGGGAGAGGAGATaGAAAGGTGACATGTTGATT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGIWERR*KGDMLI
Trigger: AATCAACATGTCACCTTTGCATCTCCTCTCCCAGAT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGACACACTGCACACACTaGAGTTTTCTTCCGGAAAAC +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGTHCTH*SFLPEN
Trigger: GTTTTCCGGAAGAAAACTCCAGTGTGTGCAGTGTGT...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATATAGTGCAGGAAGAGTaGGCTGCTGTTCATTCTGAT +
Preference number: 4 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHIVQEE*AAVHSD
Trigger: ATCAGAATGAACAGCAGCCCACTCTTCCTGCACTAT...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCTTTGAGGAGAAGGGCTaGCTCCAGGCTGATACAAAG +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGFEEKG*LQADTK
Trigger: CTTTGTATCAGCCTGGAGCCAGCCCTTCTCCTCAAA...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATAACTTTGATGTATCCTaGACAAACTTGACATTGCTT +
Preference number: 4 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDNFDVS*TNLTLL
Trigger: AAGCAATGTCAAGTTTGTCCAGGATACATCAAAGTT...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAAACTTTGATGTATCCTaGACAAACTTGACATTGCTT +
Preference number: 4 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGNFDVS*TNLTLL
Trigger: AAGCAATGTCAAGTTTGTCCAGGATACATCAAAGTT...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGGAAAACAAACTCCACTaGGGCTTGGAAAGGAAACCG +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGENKLH*GLERKP
Trigger: CGGTTTCCTTTCCAAGCCTCAGTGGAGTTTGTTTTC...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGCCTCATGGTGCTGATTaGAGTTTTCATAGGAGTCCC +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGPHGAD*SFHRSP
Trigger: GGGACTCCTATGAAAACTTCAATCAGCACCATGAGG...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACTTGTACCAGAACTTTaGTGTATCCTGGACAAACTT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGLVPEL*CILDKL
Trigger: AAGTTTGTCCAGGATACATCAAAGTTCTGGTACAAG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATATAGGCTCCTTGGAATaGATGGCTGTCTCTAATCAG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDIGSLE*MAVSNQ
Trigger: CTGATTAGAGACAGCCATTCATTCCAAGGAGCCTAT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR GCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCATCTGGGAGAGGAGATaGAAAGGTGACATGTTGATT +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLIWERR*KGDMLI
Trigger: AATCAACATGTCACCTTTGCATCTCCTCTCCCAGAT...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATACACACTGCACACACTaGAGTTTTCTTCCGGAAAAC +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDTHCTH*SFLPEN
Trigger: GTTTTCCGGAAGAAAACTCCAGTGTGTGCAGTGTGT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATACTTGTCTCTGTGCTTaGATTGAAGCACATGGGCTA +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDTCLCA*IEAHGL
Trigger: TAGCCCATGTGCTTCAATCCAAGCACAGAGACAAGT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGGCCGTGATCCATGAATaGTGCATGTGTGGAACTGAA +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGAVIHE*CMCGTE
Trigger: TTCAGTTCCACACATGCACCATTCATGGATCACGGC...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCAACTCCACTGAGGCTTaGAAAGGAAACCGCTCATCA +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGNSTEA*KGNRSS
Trigger: TGATGAGCGGTTTCCTTTCCAAGCCTCAGTGGAGTT...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGCTCCTTGGAATGAATaGCTGTCTCTAATCAGGAAG +
Preference number: 4 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDAPWNE*LSLIRK
Trigger: CTTCCTGATTAGAGACAGCCATTCATTCCAAGGAGC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCAAGAAGAGCTTTCTCTaGTTGTCTGTCAGTGTGATG +
Preference number: 4 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLKKSFL*LSVSVM
Trigger: CATCACACTGACAGACAACCAGAGAAAGCTCTTCTT...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGGACTTCCTGGCTTCTTaGCCACGAAACCAAAGATCT +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGDFLAS*PRNQRS
Trigger: AGATCTTTGGTTTCGTGGCCAAGAAGCCAGGAAGTC...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGACTTCCTGGCTTCTTaGCCACGAAACCAAAGATCT +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGDFLAS*PRNQRS
Trigger: AGATCTTTGGTTTCGTGGCCAAGAAGCCAGGAAGTC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCTCGTTTTTCAGGAAGTaGAGGCTGAATGGGACCATT +
Preference number: 4 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGSFFRK*RLNGTI
Trigger: AATGGTCCCATTCAGCCTCCACTTCCTGAAAAACGA...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCAACTTGACATTGCTTTaGTTCTCTTGTAAAGGGTGT +
Preference number: 4 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGNLTLL*FSCKGC
Trigger: ACACCCTTTACAAGAGAACCAAAGCAATGTCAAGTT...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAAACTTGACATTGCTTTaGTTCTCTTGTAAAGGGTGT +
Preference number: 4 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGNLTLL*FSCKGC
Trigger: ACACCCTTTACAAGAGAACCAAAGCAATGTCAAGTT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGAACTTGACATTGCTTTaGTTCTCTTGTAAAGGGTGT +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGNLTLL*FSCKGC
Trigger: ACACCCTTTACAAGAGAACCAAAGCAATGTCAAGTT...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGAAGAGCTTTCTCTaGTTGTCTGTCAGTGTGATG +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGKKSFL*LSVSVM
Trigger: CATCACACTGACAGACAACCAGAGAAAGCTCTTCTT...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR TCA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGTATCCTGGACAAACTTaGCATTGCTTTGGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGYPGQT*HCFGSL
Trigger: AAGAGAACCAAAGCAATGTCAAGTTTGTCCAGGATA...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CCA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGAACTTTGATGTATCCTaGACAAACTTGACATTGCTT +
Preference number: 4 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGNFDVS*TNLTLL
Trigger: AAGCAATGTCAAGTTTGTCCAGGATACATCAAAGTT...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGTCTTTCAGCAGCAGTaGGGGGCGGCCGGCCGGGGG +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEVFQQQ*GAAGRG
Trigger: CCCCCGGCCGGCCGCCCCCAACTGCTGCTGAAAGAC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS CCA 90 bp GGTGCAGGCCTCCACCCACAGAGGGCTGCTCTTCATCATCAAGGATaGCGGTCTCTCGCCCAGCACCACGGCCCGCACTGGCCACTCCAC +
Preference number: 5 (lower is better)
Translates to: GAGLHPQRAALHHQG*RSLAQHHGPHWPLH
Trigger: GTGGAGTGGCCAGTGCGGGCCGTGGTGCTGGGCGAGAGACCGCCATCCTTGATGATGAAGAGCAGCCCTCTGTGGGTGGAGGCCTGCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACATCCAGGGGGCCCCTaGTGTGGGCCAAGGCGCCGT +
Preference number: 5 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGHPGGP*CGPRRR
Trigger: ACGGCGCCTTGGCCCACACAAGGGGCCCCCTGGATG...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCATCCAGGGGGCCCCTaGTGTGGGCCAAGGCGCCGT +
Preference number: 5 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDHPGGP*CGPRRR
Trigger: ACGGCGCCTTGGCCCACACAAGGGGCCCCCTGGATG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp CCCCACAAGGCTCCCGGAAGCCCTGACGGCAGGAGCAGCGTCGACTaGGTCCAGGCCTGTGGCCTGAATACATCCCAAGGTGCAGGCCTC +
Preference number: 5 (lower is better)
Translates to: PHKAPGSPDGRSSVD*VQACGLNTSQGAGL
Trigger: GAGGCCTGCACCTTGGGATGTATTCAGGCCACAGGCCTGGACTCAGTCGACGCTGCTCCTGCCGTCAGGGCTTCCGGGAGCCTTGTGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp TCCCCGGGGACACAGATCCAGCCCGTGGTGAGTGGGCACCAGGGCTaGGGTACCCTCGGCCTTCACTTGGAGATCCGCAACTGTGAGGTG +
Preference number: 5 (lower is better)
Translates to: SPGTQIQPVVSGHQG*GTLGLHLEIRNCEV
Trigger: CACCTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGGGTACCCCAGCCCTGGTGCCCACTCACCACGGGCTGGATCTGTGTCCCCGGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGTGGTGGCGACGGCTGTaGCCCAGACCCAGGCAGGTG +
Preference number: 5 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQWWRRL*PRPRQV
Trigger: CACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACCA...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGACTGCAGGCTGCTCCTaGACGCAGGAGGTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSETAGCS*TQEVCC
Trigger: GCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTACTGCAGGCTGCTCCTaGACGCAGGAGGTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: PRCCHSLFHRGQARVVSATAGCS*TQEVCC
Trigger: GCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGT...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp CTCCGAGGACTAGCACTGTTGGTGTGGCCTCCTGGGCTCCTTTCCTaGGGCCAGCCATTGGGTGAGCCGGGTGCAGAGGTCTGGGAGAAG +
Preference number: 5 (lower is better)
Translates to: LRGLALLVWPPGLLS*GQPLGEPGAEVWEK
Trigger: CTTCTCCCAGACCTCTGCACCCGGCTCACCCAATGGCTGGCCTCAGGAAAGGAGCCCAGGAGGCCACACCAACAGTGCTAGTCCTCGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp TCCCCAGCTCGGGTGCATAGGGGTACGGCCCTTCTGACAGTGACCTaGAGAGGCGTCTCTTCTCCACAGAGGCTTCTGCGTAGCCCTGGG +
Preference number: 5 (lower is better)
Translates to: SPARVHRGTALLTVT*RGVSSPQRLLRSPG
Trigger: CCCAGGGCTACGCAGAAGCCTCTGTGGAGAAGAGACGCCTCTGCAGGTCACTGTCAGAAGGGCCGTACCCCTATGCACCCGAGCTGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTACCATGACGTCGCCTTaGAGGAGAAGGGCTGGCTCC +
Preference number: 5 (lower is better)
Translates to: PRCCHSLFHRGQARVVSATMTSP*RRRAGS
Trigger: GGAGCCAGCCCTTCTCCTCAAAGGCGACGTCATGGT...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACATCCAGGGGGCCCCTaGTGTGGGCCAAGGCGCCGT +
Preference number: 5 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGHPGGP*CGPRRR
Trigger: ACGGCGCCTTGGCCCACACAAGGGGCCCCCTGGATG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGTCTTTCAGCAGCAGTaGGGGGCGGCCGGCCGGGGG +
Preference number: 5 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHVFQQQ*GAAGRG
Trigger: CCCCCGGCCGGCCGCCCCCAACTGCTGCTGAAAGAC...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGGGTGCAGGAGAGGCTaGCCTACCTCGCTGGACCAC +
Preference number: 5 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQGCRRG*PTSLDH
Trigger: GTGGTCCAGCGAGGTAGGCAAGCCTCTCCTGCACCC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACGAGGACTAGCACTGTaGGTGTGGCCTCCTGGGCTC +
Preference number: 5 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGRGLAL*VWPPGL
Trigger: GAGCCCAGGAGGCCACACCAACAGTGCTAGTCCTCG...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTCGAGGACTAGCACTGTaGGTGTGGCCTCCTGGGCTC +
Preference number: 5 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCRGLAL*VWPPGL
Trigger: GAGCCCAGGAGGCCACACCAACAGTGCTAGTCCTCG...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGTGGTGGCGACGGCTGTaGCCCAGACCCAGGCAGGTG +
Preference number: 5 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRWWRRL*PRPRQV
Trigger: CACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACCA...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp ACTCCCTGTACAACAGAGGGCAAGGCCTCGCCAGGACTCAGTCTCTaGGTGGGTGCCAAGGAGGGAGACCTGGTGGTGTCTTGCCGTCGG +
Preference number: 5 (lower is better)
Translates to: TPCTTEGKASPGLSL*VGAKEGDLVVSCRR
Trigger: CCGACGGCAAGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGGCGAGGCCTTGCCCTCTGTTGTACAGGGAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 90 bp CAGAGCTGCAGAGCTGGCCTTGGCCACAGCCTGAGGGCCAGTCAATaGCTCTGTCTCCACCGAGGTCAGGTAGAGCACACTGCAGGCTGC +
Preference number: 5 (lower is better)
Translates to: QSCRAGLGHSLRASQ*LCLHRGQVEHTAGC
Trigger: GCAGCCTGCAGTGTGCTCTACCTGACCTCGGTGGAGACAGAGTCATTGACTGGCCCTCAGGCTGTGGCCAAGGCCAGCTCTGCAGCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp GCTGGGGTACCCTCGGCCTTCACTTGGAGATCCGCAACTGTGAGGTaGCCGGCCATATGCTGGGCAGTAGCTGGGAACCGCTCCTCCATA +
Preference number: 5 (lower is better)
Translates to: AGVPSAFTWRSATVR*PAICWAVAGNRSSI
Trigger: TATGGAGGAGCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGGGTACCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp CATCATCAAGGATGGCGGTCTCTCGCCCAGCACCACGGCCCGCACTaGCCACTCCACAACCTCCCAGCAGACGATCCAGCTCCTGTCTTT +
Preference number: 5 (lower is better)
Translates to: HHQGWRSLAQHHGPH*PLHNLPADDPAPVF
Trigger: AAAGACAGGAGCTGGATCGTCTGCTGGGAGGTTGTGGAGTGGCCAGTGCGGGCCGTGGTGCTGGGCGAGAGACCGCCATCCTTGATGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp CGCCAGGACTCAGTCTCTGAGTGGGTGCCAAGGAGGGAGACCTGGTaGTGTCTTGCCGTCGGTTGCTTTCCTTGCCCTGAACTGGGCTGC +
Preference number: 5 (lower is better)
Translates to: RQDSVSEWVPRRETW*CLAVGCFPCPELGC
Trigger: GCAGCCCAGTTCAGGGCAAGGAAAGCAACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp CCTCGCCAGGACTCAGTCTCTGAGTGGGTGCCAAGGAGGGAGACCTaGTGGTGTCTTGCCGTCGGTTGCTTTCCTTGCCCTGAACTGGGC +
Preference number: 5 (lower is better)
Translates to: PRQDSVSEWVPRRET*WCLAVGCFPCPELG
Trigger: GCCCAGTTCAGGGCAAGGAAAGCAACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGGCGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp CCTGTACAACAGAGGGCAAGGCCTCGCCAGGACTCAGTCTCTGAGTaGGTGCCAAGGAGGGAGACCTGGTGGTGTCTTGCCGTCGGTTGC +
Preference number: 5 (lower is better)
Translates to: PVQQRARPRQDSVSE*VPRRETWWCLAVGC
Trigger: GCAACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGGCGAGGCCTTGCCCTCTGTTGTACAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCTGTGTGTGGCCACCTaGCAGACTCGGCAGGAGACA +
Preference number: 5 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDLCVAT*QTRQET
Trigger: TGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCACCCTCGGCCTTCACTaGGAGATCCGCAACTGTGAG +
Preference number: 5 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPTLGLH*EIRNCE
Trigger: CTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGGGT...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGTCCAGGCAGGGTGGTaGGCACAGGGCTCCGAGGAC +
Preference number: 5 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGVQAGW*AQGSED
Trigger: GTCCTCGGAGCCCTGTGCCAACCACCCTGCCTGGAC...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGTCCAGGCAGGGTGGTaGGCACAGGGCTCCGAGGAC +
Preference number: 5 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGVQAGW*AQGSED
Trigger: GTCCTCGGAGCCCTGTGCCAACCACCCTGCCTGGAC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCTGGTGGCGACGGCTGTaGCCCAGACCCAGGCAGGTG +
Preference number: 5 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGWWRRL*PRPRQV
Trigger: CACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACCA...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTAGGGTGTTCTGGGGGTaGGGTGACATCTGGGAGAGG +
Preference number: 5 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCRVFWG*GDIWER
Trigger: CCTCTCCCAGATGTCACCCAACCCCCAGAACACCCT...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAGCTGCTGTGCTCATGTaGGTAGGCACTGGGGCCTCT +
Preference number: 5 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGAAVLM*VGTGAS
Trigger: AGAGGCCCCAGTGCCTACCAACATGAGCACAGCAGC...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp GAGGGAGACCTGGTGGTGTCTTGCCGTCGGTTGCTTTCCTTGCCCTaGACTGGGCTGCTGGTGTGTAAGGGTGTGGAGGGACCAGACAGC +
Preference number: 5 (lower is better)
Translates to: EGDLVVSCRRLLSLP*TGLLVCKGVEGPDS
Trigger: GCTGTCTGGTCCCTCCACACCCTTACACACCAGCAGCCCAGTTCAGGGCAAGGAAAGCAACCGACGGCAAGACACCACCAGGTCTCCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp CAAGTGGCCTCGGTGTCGCTGCTCGTCCGGTCGTGCAGGAAAAGCTaGGGCCAAGATCCGCTCCGTTACATAGGTGAGGTCCAAGTCCCA +
Preference number: 5 (lower is better)
Translates to: QVASVSLLVRSCRKS*GQDPLRYIGEVQVP
Trigger: TGGGACTTGGACCTCACCTATGTAACGGAGCGGATCTTGGCCGCAGCTTTTCCTGCACGACCGGACGAGCAGCGACACCGAGGCCACTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS GCA 90 bp GGTCAGGTAGAGCACACTGCAGGCTGCTCCTTGACGCAGGAGGTCTaGTGCTGTGCTCATGTTGGTAGGCACTGGGGCCTCTGGGGTTTC +
Preference number: 5 (lower is better)
Translates to: GQVEHTAGCSLTQEV*CCAHVGRHWGLWGF
Trigger: GAAACCCCAGAGGCCCCAGTGCCTACCAACATGAGCACAGCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGTGTGCTCTACCTGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp CACGGCATAGGAGCAGCCCTCATGCCCTTCCTCACCCACCTTGGGTaGCTTCAGGCAGCCATAGTCAGGCATTGGGGCATGATGATGCCC +
Preference number: 5 (lower is better)
Translates to: HGIGAALMPFLTHLG*LQAAIVRHWGMMMP
Trigger: GGGCATCATCATGCCCCAATGCCTGACTATGGCTGCCTGAAGCCACCCAAGGTGGGTGAGGAAGGGCATGAGGGCTGCTCCTATGCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp GAGATCCGCAACTGTGAGGTGCCCGGCCATATGCTGGGCAGTAGCTaGGAACCGCTCCTCCATAGCCATAGGTTACCAGGGCAGGGTACC +
Preference number: 5 (lower is better)
Translates to: EIRNCEVPGHMLGSS*EPLLHSHRLPGQGT
Trigger: GGTACCCTGCCCTGGTAACCTATGGCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp TGCACTGAGGATCTCGGGGAGACCGAGGTAGCGTGCTGTGTCCACTaGAGCCATCCCTCCAGGATGGTTCAGGTGACTCTGAGACGGGAG +
Preference number: 5 (lower is better)
Translates to: CTEDLGETEVACCVH*SHPSRMVQVTLRRE
Trigger: CTCCCGTCTCAGAGTCACCTGAACCATCCTGGAGGGATGGCTCCAGTGGACACAGCACGCTACCTCGGTCTCCCCGAGATCCTCAGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046144.10
CDS CCA 90 bp GGTGAGCTCTGGGGTGGTTCTGGGCTGCCCACAAGCCAGGGCATCTaGGTAGGCACAGGAGTAAGAGGGGAGCCATCTGGGCTATCTGAA +
Preference number: 5 (lower is better)
Translates to: GELWGGSGLPTSQGI*VGTGVRGEPSGLSE
Trigger: TTCAGATAGCCCAGATGGCTCCCCTCTTACTCCTGTGCCTACCCAGATGCCCTGGCTTGTGGGCAGCCCAGAACCACCCCAGAGCTCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGGAGTGGTTCAGAGACTaGGTGGACCCCAGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEEWFRD*VDPRCS
Trigger: AGAACACCTGGGGTCCACCAAGTCTCTGAACCACTC...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAACGATGACCCCAAGCTaGCCTTTGCTCCCCTTGCAG +
Preference number: 5 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGTMTPS*PLLPLQ
Trigger: CTGCAAGGGGAGCAAAGGCAAGCTTGGGGTCATCGT...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTACGATGACCCCAAGCTaGCCTTTGCTCCCCTTGCAG +
Preference number: 5 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCTMTPS*PLLPLQ
Trigger: CTGCAAGGGGAGCAAAGGCAAGCTTGGGGTCATCGT...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGTCTTTCAGCAGCAGTaGGGGGCGGCCGGCCGGGGG +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGVFQQQ*GAAGRG
Trigger: CCCCCGGCCGGCCGCCCCCAACTGCTGCTGAAAGAC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGGGTGCAGGAGAGGCTaGCCTACCTCGCTGGACCAC +
Preference number: 5 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGGCRRG*PTSLDH
Trigger: GTGGTCCAGCGAGGTAGGCAAGCCTCTCCTGCACCC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTACCCTCGGCCTTCACTaGGAGATCCGCAACTGTGAG +
Preference number: 5 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCTLGLH*EIRNCE
Trigger: CTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGGGT...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGAAGCCAAGGGTCCTGTaGAGGCCAGGTGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEKPRVL*RPGVQK
Trigger: TTTCTGGACACCTGGCCTCAACAGGACCCTTGGCTT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCAAGGCCCCAGGATCCTaGTCTTTCAGCAGGGCAATG +
Preference number: 5 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPKAPGS*SFSRAM
Trigger: CATTGCCCTGCTGAAAGACAAGGATCCTGGGGCCTT...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp CTGTGTGTTCTGTGGTTAGCGTGGATGAGTGGCCAGAGTCGCTGCTaGCAGAGAGCATCGGGGGTGGGGGAAGCTCTGGAGAAGGTGCTG +
Preference number: 5 (lower is better)
Translates to: LCVLWLAWMSGQSRC*QRASGVGEALEKVL
Trigger: CAGCACCTTCTCCAGAGCTTCCCCCACCCCCGATGCTCTCTGTCAGCAGCGACTCTGGCCACTCATCCACGCTAACCACAGAACACACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 90 bp GGGAACCGCTCCTCCATAGCCATAGGTTACCAGGGCAGGGTACCCTaGATGCCCATACCTGCCTTCAGAGCACACGGCATAGGAGCAGCC +
Preference number: 5 (lower is better)
Translates to: GNRSSIAIGYQGRVP*MPIPAFRAHGIGAA
Trigger: GGCTGCTCCTATGCCGTGTGCTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGCCCTGGTAACCTATGGCTATGGAGGAGCGGTTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp TACAACAGAGGGCAAGGCCTCGCCAGGACTCAGTCTCTGAGTGGGTaGCAAGGAGGGAGACCTGGTGGTGTCTTGCCGTCGGTTGCTTTC +
Preference number: 5 (lower is better)
Translates to: YNRGQGLARTQSLSG*QGGRPGGVLPSVAF
Trigger: GAAAGCAACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGGCGAGGCCTTGCCCTCTGTTGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp GGTGAGCCGGGTGCAGAGGTCTGGGAGAAGGGGCTAGGGTCCAGTTaGTCAGGCCTGCTGCTTGTCAACAGCTCAGGAGTCTTTTCAGCA +
Preference number: 5 (lower is better)
Translates to: GEPGAEVWEKGLGSS*SGLLLVNSSGVFSA
Trigger: TGCTGAAAAGACTCCTGAGCTGTTGACAAGCAGCAGGCCTGAGCAACTGGACCCTAGCCCCTTCTCCCAGACCTCTGCACCCGGCTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp TTCCTCACCCACCTTGGGTGGCTTCAGGCAGCCATAGTCAGGCATTaGGGCATGATGATGCCCACAGGCAGGCACCAGCAGAGGCAATGG +
Preference number: 5 (lower is better)
Translates to: FLTHLGWLQAAIVRH*GMMMPTGRHQQRQW
Trigger: CCATTGCCTCTGCTGGTGCCTGCCTGTGGGCATCATCATGCCCCAATGCCTGACTATGGCTGCCTGAAGCCACCCAAGGTGGGTGAGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp CAACCCTTGATCTTCACGCCTTTGGGCCCAGTCTCGATGAGGAAATaGCGGACCAGCTGTTCTGAGGGGTCCCCTTTCCAGGGCTGCGCA +
Preference number: 5 (lower is better)
Translates to: QPLIFTPLGPVSMRK*RTSCSEGSPFQGCA
Trigger: TGCGCAGCCCTGGAAAGGGGACCCCTCAGAACAGCTGGTCCGCCATTTCCTCATCGAGACTGGGCCCAAAGGCGTGAAGATCAAGGGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAGAGTGGTTCAGAGACTaGGTGGACCCCAGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGEWFRD*VDPRCS
Trigger: AGAACACCTGGGGTCCACCAAGTCTCTGAACCACTC...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTAGTTCCGTGGCCACCTaGTCCTCACAGAATTTCCTC +
Preference number: 5 (lower is better)
Translates to: PRCCHSLFHRGQARVVSASSVAT*SSQNFL
Trigger: GAGGAAATTCTGTGAGGACAAGGTGGCCACGGAACT...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATAGCCATAGTCAGGCATaGGGGCATGATGATGCCCAC +
Preference number: 5 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDSHSQA*GHDDAH
Trigger: GTGGGCATCATCATGCCCCAATGCCTGACTATGGCT...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGACCCTCGGCCTTCACTaGGAGATCCGCAACTGTGAG +
Preference number: 5 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQTLGLH*EIRNCE
Trigger: CTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGGGT...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCGAGGACTAGCACTGTaGGTGTGGCCTCCTGGGCTC +
Preference number: 5 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGRGLAL*VWPPGL
Trigger: GAGCCCAGGAGGCCACACCAACAGTGCTAGTCCTCG...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGACGAAACCAAAGATCTaGGAGGTGGCTCCATCTGGG +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSETKPKI*EVAPSG
Trigger: CCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCGT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGGACTTCCTGGCTTCTaGGCCACGAAACCAAAGATC +
Preference number: 5 (lower is better)
Translates to: PRCCHSLFHRGQARVVSAGLPGF*ATKPKI
Trigger: GATCTTTGGTTTCGTGGCCAAGAAGCCAGGAAGTCC...AGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp GGGGGTTGGGTGACATCTGGGAGAGGAGATGCAAAGGTGACATGTTaGTTGGTGCTTCTGGCTGGTGGCGACGGCTGTTGCCCAGACCCA +
Preference number: 5 (lower is better)
Translates to: GGWVTSGRGDAKVTC*LVLLAGGDGCCPDP
Trigger: TGGGTCTGGGCAACAGCCGTCGCCACCAGCCAGAAGCACCAATCAACATGTCACCTTTGCATCTCCTCTCCCAGATGTCACCCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp CAGCGTCGACTGAGTCCAGGCCTGTGGCCTGAATACATCCCAAGGTaGAGGCCTCCACCCACAGAGGGCTGCTCTTCATCATCAAGGATG +
Preference number: 5 (lower is better)
Translates to: QRRLSPGLWPEYIPR*RPPPTEGCSSSSRM
Trigger: CATCCTTGATGATGAAGAGCAGCCCTCTGTGGGTGGAGGCCTGCACCTTGGGATGTATTCAGGCCACAGGCCTGGACTCAGTCGACGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp TCGGCCTTCACTTGGAGATCCGCAACTGTGAGGTGCCCGGCCATATaGTGGGCAGTAGCTGGGAACCGCTCCTCCATAGCCATAGGTTAC +
Preference number: 5 (lower is better)
Translates to: SAFTWRSATVRCPAI*WAVAGNRSSIAIGY
Trigger: GTAACCTATGGCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTCCAAGTGAAGGCCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp CTGAAGAAGCACTGCACTGAGGATCTCGGGGAGACCGAGGTAGCGTaGTGTGTCCACTGGAGCCATCCCTCCAGGATGGTTCAGGTGACT +
Preference number: 5 (lower is better)
Translates to: LKKHCTEDLGETEVA*CVHWSHPSRMVQVT
Trigger: AGTCACCTGAACCATCCTGGAGGGATGGCTCCAGTGGACACAGCACGCTACCTCGGTCTCCCCGAGATCCTCAGTGCAGTGCTTCTTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp TCCTGGGTAGAGTACTGCGTTGCTTTGAGTGGTTCAGAGACTTGGTaGACCCCAGGTGTTCTATGCGCCGGACCGGGGCTGTGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: SWVEYCVALSGSETW*TPGVLCAGPGLCFS
Trigger: GGAGAAGCACAGCCCCGGTCCGGCGCATAGAACACCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTCTACCCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 90 bp GCCTTCACTTGGAGATCCGCAACTGTGAGGTGCCCGGCCATATGCTaGGCAGTAGCTGGGAACCGCTCCTCCATAGCCATAGGTTACCAG +
Preference number: 5 (lower is better)
Translates to: AFTWRSATVRCPAIC*AVAGNRSSIAIGYQ
Trigger: CTGGTAACCTATGGCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTCCAAGTGAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp CGACGGCTGTTGCCCAGACCCAGGCAGGTGTCGTTTTTCAGGAAGTaGAGGCTGAATGGGACCATTGGCATCATAGGAGGTAGCCAGGGG +
Preference number: 5 (lower is better)
Translates to: RRLLPRPRQVSFFRK*RLNGTIGIIGGSQG
Trigger: CCCCTGGCTACCTCCTATGATGCCAATGGTCCCATTCAGCCTCCACTTCCTGAAAAACGACACCTGCCTGGGTCTGGGCAACAGCCGTCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGACTGTGTGTGGCCACCTaGCAGACTCGGCAGGAGACA +
Preference number: 5 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGLCVAT*QTRQET
Trigger: TGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAG...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGAGTGGTTCAGAGACTaGGTGGACCCCAGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQEWFRD*VDPRCS
Trigger: AGAACACCTGGGGTCCACCAAGTCTCTGAACCACTC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCGAGTACTGCGTTGCTTaGAGTGGTTCAGAGACTTGG +
Preference number: 5 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPEYCVA*SGSETW
Trigger: CCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTC...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCACGTCTCCATGGCTTaGCAGATGGAACACAACTTG +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSEHVSMA*QMEHNL
Trigger: CAAGTTGTGTTCCATCTGCAAAGCCATGGAGACGTG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGAAGCCAAGGGTCCTGTaGAGGCCAGGTGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQKPRVL*RPGVQK
Trigger: TTTCTGGACACCTGGCCTCAACAGGACCCTTGGCTT...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGTCCAGGCAGGGTGGTaGGCACAGGGCTCCGAGGAC +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGVQAGW*AQGSED
Trigger: GTCCTCGGAGCCCTGTGCCAACCACCCTGCCTGGAC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGTGCAAAGGTGACATGTaGATTGGTGCTTCTGGCTGG +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSECKGDM*IGASGW
Trigger: CCAGCCAGAAGCACCAATCAACATGTCACCTTTGCA...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGTTGATCTTCACGCCTTaGGGCCCAGTCTCGATGAGG +
Preference number: 5 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQLIFTP*GPVSMR
Trigger: CCTCATCGAGACTGGGCCCAAAGGCGTGAAGATCAA...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGCTGCTGTGCTCATGTaGGTAGGCACTGGGGCCTCT +
Preference number: 5 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGAAVLM*VGTGAS
Trigger: AGAGGCCCCAGTGCCTACCAACATGAGCACAGCAGC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATACGAAACCAAAGATCTaGGAGGTGGCTCCATCTGGG +
Preference number: 5 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDTKPKI*EVAPSG
Trigger: CCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCGT...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACTTCCTGGCTTCTaGGCCACGAAACCAAAGATC +
Preference number: 5 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCGLPGF*ATKPKI
Trigger: GATCTTTGGTTTCGTGGCCAAGAAGCCAGGAAGTCC...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS GCA 90 bp CATAGCCATAGGTTACCAGGGCAGGGTACCCTGAATGCCCATACCTaGCTTCAGAGCACACGGCATAGGAGCAGCCCTCATGCCCTTCCT +
Preference number: 5 (lower is better)
Translates to: HSHRLPGQGTLNAHT*LQSTRHRSSPHALP
Trigger: AGGAAGGGCATGAGGGCTGCTCCTATGCCGTGTGCTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGCCCTGGTAACCTATGGCTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAACGATGACCCCAAGCTaGCCTTTGCTCCCCTTGCAG +
Preference number: 5 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGTMTPS*PLLPLQ
Trigger: CTGCAAGGGGAGCAAAGGCAAGCTTGGGGTCATCGT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCACCATGACGTCGCCTTaGAGGAGAAGGGCTGGCTCC +
Preference number: 5 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLTMTSP*RRRAGS
Trigger: GGAGCCAGCCCTTCTCCTCAAAGGCGACGTCATGGT...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCGGGTGCAGGAGAGGCTaGCCTACCTCGCTGGACCAC +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGGCRRG*PTSLDH
Trigger: GTGGTCCAGCGAGGTAGGCAAGCCTCTCCTGCACCC...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGAGCCATAGTCAGGCATaGGGGCATGATGATGCCCAC +
Preference number: 5 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRSHSQA*GHDDAH
Trigger: GTGGGCATCATCATGCCCCAATGCCTGACTATGGCT...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAAGCCAAGGGTCCTGTaGAGGCCAGGTGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWKPRVL*RPGVQK
Trigger: TTTCTGGACACCTGGCCTCAACAGGACCCTTGGCTT...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGTTGATCTTCACGCCTTaGGGCCCAGTCTCGATGAGG +
Preference number: 5 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRLIFTP*GPVSMR
Trigger: CCTCATCGAGACTGGGCCCAAAGGCGTGAAGATCAA...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGCTGCTGTGCTCATGTaGGTAGGCACTGGGGCCTCT +
Preference number: 5 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHAAVLM*VGTGAS
Trigger: AGAGGCCCCAGTGCCTACCAACATGAGCACAGCAGC...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATACTGCAGGCTGCTCCTaGACGCAGGAGGTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDTAGCS*TQEVCC
Trigger: GCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp CCAAGCTTGCCTTTGCTCCCCTTGCAGTACAACACAACCACGTGCTaGGGGTCGGCACTGAGCCACGTCTCCATGGCTTTGCAGATGGAA +
Preference number: 5 (lower is better)
Translates to: PSLPLLPLQYNTTTC*GSALSHVSMALQME
Trigger: TTCCATCTGCAAAGCCATGGAGACGTGGCTCAGTGCCGACCCTCAGCACGTGGTTGTGTTGTACTGCAAGGGGAGCAAAGGCAAGCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp GGATCTAGGCTGAAGCTCCTGGGTAGAGTACTGCGTTGCTTTGAGTaGTTCAGAGACTTGGTGGACCCCAGGTGTTCTATGCGCCGGACC +
Preference number: 5 (lower is better)
Translates to: GSRLKLLGRVLRCFE*FRDLVDPRCSMRRT
Trigger: GGTCCGGCGCATAGAACACCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTCTACCCAGGAGCTTCAGCCTAGATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGCAAGGGCAGGAGTACTGCGTTGCTTaGAGTGGTTCAGAGACTTGG +
Preference number: 5 (lower is better)
Translates to: HMPGHLRGPLTQLSRQGQEYCVA*SGSETW
Trigger: CCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTC...CTGCCCTTGCCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGTTTCTCTGAAAGGTaGAAGAGCAGGTACTTGTCT +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSERFSER*KSRYLS
Trigger: AGACAAGTACCTGCTCTTCAACCTTTCAGAGAAACG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGTTCCGTGGCCACCTaGTCCTCACAGAATTTCCTC +
Preference number: 5 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWSSVAT*SSQNFL
Trigger: GAGGAAATTCTGTGAGGACAAGGTGGCCACGGAACT...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATAGGGTGTTCTGGGGGTaGGGTGACATCTGGGAGAGG +
Preference number: 5 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDRVFWG*GDIWER
Trigger: CCTCTCCCAGATGTCACCCAACCCCCAGAACACCCT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGGGAAAGATGTGGCTaGTACCAGAACTTTGATGTA +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSERERCG*YQNFDV
Trigger: TACATCAAAGTTCTGGTACAAGCCACATCTTTCCCG...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp AGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAAAGGCCCCAGGATCCTaGTCTTTCAGCAGGGCAATG +
Preference number: 5 (lower is better)
Translates to: REGRKLSSFSHPSMMGPGKAPGS*SFSRAM
Trigger: CATTGCCCTGCTGAAAGACAAGGATCCTGGGGCCTT...TCCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCAAGGCCCCAGGATCCTaGTCTTTCAGCAGGGCAATG +
Preference number: 5 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGKAPGS*SFSRAM
Trigger: CATTGCCCTGCTGAAAGACAAGGATCCTGGGGCCTT...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATAAGAGCTTTCTCTGGTaGTCTGTCAGTGTGATGCCT +
Preference number: 5 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDKSFLW*SVSVMP
Trigger: AGGCATCACACTGACAGACAACCAGAGAAAGCTCTT...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGAAAGAGCTTTCTCTGGTaGTCTGTCAGTGTGATGCCT +
Preference number: 5 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGKSFLW*SVSVMP
Trigger: AGGCATCACACTGACAGACAACCAGAGAAAGCTCTT...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CCATCTGCTCACATGCCAGGTCACCTTAGGGGCCCACTCACTCAGCTTAGCAGGGGACTTCCTGGCTTCTaGGCCACGAAACCAAAGATC +
Preference number: 5 (lower is better)
Translates to: PSAHMPGHLRGPLTQLSRGLPGF*ATKPKI
Trigger: GATCTTTGGTTTCGTGGCCAAGAAGCCAGGAAGTCC...CCTGCTAAGCTGAGTGAGTGGGCCCCTAAGGTGACCTGGCATGTGAGCAGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTTGGCCCAGTAGAACTTaGGTGATGAAGGTGACAATG +
Preference number: 5 (lower is better)
Translates to: QMLPLPLSQGPGQGSERCWPSRT*VMKVTM
Trigger: CATTGTCACCTTCATCACCAAAGTTCTACTGGGCCA...ACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp TGCTCCCCTTGCAGTACAACACAACCACGTGCTGAGGGTCGGCACTaGGCCACGTCTCCATGGCTTTGCAGATGGAACACAACTTGTCCA +
Preference number: 5 (lower is better)
Translates to: CSPCSTTQPRAEGRH*ATSPWLCRWNTTCP
Trigger: TGGACAAGTTGTGTTCCATCTGCAAAGCCATGGAGACGTGGCTCAGTGCCGACCCTCAGCACGTGGTTGTGTTGTACTGCAAGGGGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 90 bp TTGTGTGGGCCAAGGCGCCGTCCACGCTATCCTCATGGTGCTGATTaGAGTTTTCATAGGAGTCCCAGCGTACAGCAGGCTCTGTCGTGT +
Preference number: 5 (lower is better)
Translates to: LCGPRRRPRYPHGAD*SFHRSPSVQQALSC
Trigger: ACACGACAGAGCCTGCTGTACGCTGGGACTCCTATGAAAACTTCAATCAGCACCATGAGGATAGCGTGGACGGCGCCTTGGCCCACACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp GACTCGGCAGGAGACACCGGTCCCATCGATGGTCACCTTACACACTaGACACACTGGAGTTTTCTTCCGGAAAACCTTCTCCCGGAAGCT +
Preference number: 5 (lower is better)
Translates to: DSAGDTGPIDGHLTH*THWSFLPENLLPEA
Trigger: AGCTTCCGGGAGAAGGTTTTCCGGAAGAAAACTCCAGTGTGTGCAGTGTGTAAGGTGACCATCGATGGGACCGGTGTCTCCTGCCGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 90 bp GTGTGGCCACCTTGCAGACTCGGCAGGAGACACCGGTCCCATCGATaGTCACCTTACACACTGCACACACTGGAGTTTTCTTCCGGAAAA +
Preference number: 5 (lower is better)
Translates to: VWPPCRLGRRHRSHR*SPYTLHTLEFSSGK
Trigger: TTTTCCGGAAGAAAACTCCAGTGTGTGCAGTGTGTAAGGTGACCATCGATGGGACCGGTGTCTCCTGCCGAGTCTGCAAGGTGGCCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 90 bp AGGCCTGACAGGATGAAGTCACCTTTGCTTCACATTTTCTGTGTGTaGCCACCTTGCAGACTCGGCAGGAGACACCGGTCCCATCGATGG +
Preference number: 5 (lower is better)
Translates to: RPDRMKSPLLHIFCV*PPCRLGRRHRSHRW
Trigger: CCATCGATGGGACCGGTGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAGAAAATGTGAAGCAAAGGTGACTTCATCCTGTCAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCCTGTGTGTGGCCACCTaGCAGACTCGGCAGGAGACA +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGLCVAT*QTRQET
Trigger: TGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAG...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGGCCCAGATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGAGGATGAAGTCACCTTaGCTTCACATTTTCTGTGTG +
Preference number: 5 (lower is better)
Translates to: VAQMLPLPLSQGPGQGSERMKSP*LHIFCV
Trigger: CACACAGAAAATGTGAAGCAAAGGTGACTTCATCCT...CTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCATCTGGGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCGTTTCTCTGAAAGGTaGAAGAGCAGGTACTTGTCT +
Preference number: 5 (lower is better)
Translates to: CCHSLFHRGQARVVSAVDRFSER*KSRYLS
Trigger: AGACAAGTACCTGCTCTTCAACCTTTCAGAGAAACG...ATCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGACGTTTCTCTGAAAGGTaGAAGAGCAGGTACTTGTCT +
Preference number: 5 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGRFSER*KSRYLS
Trigger: AGACAAGTACCTGCTCTTCAACCTTTCAGAGAAACG...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGCACGTCTCCATGGCTTaGCAGATGGAACACAACTTG +
Preference number: 5 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWHVSMA*QMEHNL
Trigger: CAAGTTGTGTTCCATCTGCAAAGCCATGGAGACGTG...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGACCCCAAGCTTGCCTTaGCTCCCCTTGCAGTACAAC +
Preference number: 5 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGTPSLP*LPLQYN
Trigger: GTTGTACTGCAAGGGGAGCAAAGGCAAGCTTGGGGT...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCACCATGACGTCGCCTTaGAGGAGAAGGGCTGGCTCC +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGTMTSP*RRRAGS
Trigger: GGAGCCAGCCCTTCTCCTCAAAGGCGACGTCATGGT...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATAGCCATAGTCAGGCATaGGGGCATGATGATGCCCAC +
Preference number: 5 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHSHSQA*GHDDAH
Trigger: GTGGGCATCATCATGCCCCAATGCCTGACTATGGCT...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCAGGGTGTTCTGGGGGTaGGGTGACATCTGGGAGAGG +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGRVFWG*GDIWER
Trigger: CCTCTCCCAGATGTCACCCAACCCCCAGAACACCCT...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCGTATCCTGGACAAACTaGACATTGCTTTGGTTCTCT +
Preference number: 5 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPVSWTN*TLLWFS
Trigger: AGAGAACCAAAGCAATGTCAAGTTTGTCCAGGATAC...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGTTGATCTTCACGCCTTaGGGCCCAGTCTCGATGAGG +
Preference number: 5 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGLIFTP*GPVSMR
Trigger: CCTCATCGAGACTGGGCCCAAAGGCGTGAAGATCAA...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGCTGGCAGGGTCATTCCCCTCCAGGGCTCCACTACTGACACCTCCTCACCCCTCTTCTAGAGGATCTTaGCTAGGAATTCTCAGACAG +
Preference number: 5 (lower is better)
Translates to: ELAGSFPSRAPLLTPPHPSSRGS*LGILRQ
Trigger: CTGTCTGAGAATTCCTAGCAAAGATCCTCTAGAAGA...GGGGTGAGGAGGTGTCAGTAGTGGAGCCCTGGAGGGGAATGACCCTGCCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS TCA 90 bp TTCTCTGAAAGGTTGAAGAGCAGGTACTTGTCTCTGTGCTTGGATTaGAGCACATGGGCTAGCTCGCGCAAGTGGCCTCGGTGTCGCTGC +
Preference number: 5 (lower is better)
Translates to: FSERLKSRYLSLCLD*STWASSRKWPRCRC
Trigger: GCAGCGACACCGAGGCCACTTGCGCGAGCTAGCCCATGTGCTTCAATCCAAGCACAGAGACAAGTACCTGCTCTTCAACCTTTCAGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS TCA 90 bp ACCGCTCATCAGCCCAGGCCTCATCTAGTTGGTCCTTTGGGAAGGTaGGCCGTGATCCATGAATGGTGCATGTGTGGAACTGAACTCGGA +
Preference number: 5 (lower is better)
Translates to: TAHQPRPHLVGPLGR*AVIHEWCMCGTELG
Trigger: TCCGAGTTCAGTTCCACACATGCACCATTCATGGATCACGGCTCACCTTCCCAAAGGACCAACTAGATGAGGCCTGGGCTGATGAGCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp GGCCAACCAAAGTCTTGCACCTTGGGGTTCAGGCGGGTGAGGTCATaGCGTTTCTCTGAAAGGTTGAAGAGCAGGTACTTGTCTCTGTGC +
Preference number: 5 (lower is better)
Translates to: GQPKSCTLGFRRVRS*RFSERLKSRYLSLC
Trigger: GCACAGAGACAAGTACCTGCTCTTCAACCTTTCAGAGAAACGGCATGACCTCACCCGCCTGAACCCCAAGGTGCAAGACTTTGGTTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp AACTTGTCCAGAGGTGGGGCATGTAGTTCAGGCCAACCAAAGTCTTaGACCTTGGGGTTCAGGCGGGTGAGGTCATGCCGTTTCTCTGAA +
Preference number: 5 (lower is better)
Translates to: NLSRGGACSSGQPKS*TLGFRRVRSCRFSE
Trigger: TTCAGAGAAACGGCATGACCTCACCCGCCTGAACCCCAAGGTGCAAGACTTTGGTTGGCCTGAACTACATGCCCCACCTCTGGACAAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 90 bp ACAGAATTTCCTCATGGTGAGGGTTGCCAGCGCCTGGTCTGCCCCTaGAGAGATCTTGCTGTAGTGCATATAAGCAGAGACGATGACCCC +
Preference number: 5 (lower is better)
Translates to: TEFPHGEGCQRLVCP*RDLAVVHISRDDDP
Trigger: GGGGTCATCGTCTCTGCTTATATGCACTACAGCAAGATCTCTGCAGGGGCAGACCAGGCGCTGGCAACCCTCACCATGAGGAAATTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 90 bp GGAGACACCGGTCCCATCGATGGTCACCTTACACACTGCACACACTaGAGTTTTCTTCCGGAAAACCTTCTCCCGGAAGCTGTGTGGTTC +
Preference number: 5 (lower is better)
Translates to: GDTGPIDGHLTHCTH*SFLPENLLPEAVWF
Trigger: GAACCACACAGCTTCCGGGAGAAGGTTTTCCGGAAGAAAACTCCAGTGTGTGCAGTGTGTAAGGTGACCATCGATGGGACCGGTGTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 90 bp TCTGCGGTCCTGGGGGTCAGTGCTAGAGAAGGTGATGCTGTTCACTaGGTAATGGCGGCGAAAGAAGAGCTTTCTCTGGTTGTCTGTCAG +
Preference number: 5 (lower is better)
Translates to: SAVLGVSAREGDAVH*VMAAKEELSLVVCQ
Trigger: CTGACAGACAACCAGAGAAAGCTCTTCTTTCGCCGCCATTACCCAGTGAACAGCATCACCTTCTCTAGCACTGACCCCCAGGACCGCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATACCCCAAGCTTGCCTTaGCTCCCCTTGCAGTACAAC +
Preference number: 5 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDTPSLP*LPLQYN
Trigger: GTTGTACTGCAAGGGGAGCAAAGGCAAGCTTGGGGT...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGAGTTCCGTGGCCACCTaGTCCTCACAGAATTTCCTC +
Preference number: 5 (lower is better)
Translates to: CVEGRQEAFKLLPSLHDGSSVAT*SSQNFL
Trigger: GAGGAAATTCTGTGAGGACAAGGTGGCCACGGAACT...CCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp ATGCTGCCACTCCCTCTTTCACAGGGGCCAGGCCAGGGTAGTGAGCGCTGTGGATCTTCTAGAGGATCTTaGCTAGGAATTCTCAGACAG +
Preference number: 5 (lower is better)
Translates to: MLPLPLSQGPGQGSERCGSSRGS*LGILRQ
Trigger: CTGTCTGAGAATTCCTAGCAAAGATCCTCTAGAAGA...TCCACAGCGCTCACTACCCTGGCCTGGCCCCTGTGAAAGAGGGAGTGGCAGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATACGAAACCAAAGATCTaGGAGGTGGCTCCATCTGGG +
Preference number: 5 (lower is better)
Translates to: GLCVEGRQEAFKLLPSLHTKPKI*EVAPSG
Trigger: CCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCGT...ATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCGAGTACTGCGTTGCTTaGAGTGGTTCAGAGACTTGG +
Preference number: 5 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLEYCVA*SGSETW
Trigger: CCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTC...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCACCCCAAGCTTGCCTTaGCTCCCCTTGCAGTACAAC +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGTPSLP*LPLQYN
Trigger: GTTGTACTGCAAGGGGAGCAAAGGCAAGCTTGGGGT...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS CCA 90 bp AGGCTCTGTCGTGTTGTAATCCACGGAGACAGAGGGATCATTCCGTaGGGTGTTGCCTTTGACCTTCTCAGGGCTGGAGGAGAAAACAAA +
Preference number: 5 (lower is better)
Translates to: RLCRVVIHGDRGIIP*GVAFDLLRAGGENK
Trigger: TTTGTTTTCTCCTCCAGCCCTGAGAAGGTCAAAGGCAACACCCCACGGAATGATCCCTCTGTCTCCGTGGATTACAACACGACAGAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCCCTGGAGGATGAAGTCACCTTaGCTTCACATTTTCTGTGTG +
Preference number: 5 (lower is better)
Translates to: EGRQEAFKLLPSLHDGPWRMKSP*LHIFCV
Trigger: CACACAGAAAATGTGAAGCAAAGGTGACTTCATCCT...CCAGGGCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCAAGAGCTTTCTCTGGTaGTCTGTCAGTGTGATGCCT +
Preference number: 5 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLKSFLW*SVSVMP
Trigger: AGGCATCACACTGACAGACAACCAGAGAAAGCTCTT...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCTGCAAAGGTGACATGTaGATTGGTGCTTCTGGCTGG +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGCKGDM*IGASGW
Trigger: CCAGCCAGAAGCACCAATCAACATGTCACCTTTGCA...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGGGCGTATCCTGGACAAACTaGACATTGCTTTGGTTCTCT +
Preference number: 5 (lower is better)
Translates to: VWREGRKLSSFSHPSMMGVSWTN*TLLWFS
Trigger: AGAGAACCAAAGCAATGTCAAGTTTGTCCAGGATAC...GCCCATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTGGTCTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCGGGAAAGATGTGGCTaGTACCAGAACTTTGATGTA +
Preference number: 5 (lower is better)
Translates to: SGLCVEGRQEAFKLLPSLRERCG*YQNFDV
Trigger: TACATCAAAGTTCTGGTACAAGCCACATCTTTCCCG...GAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAGACCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGTGGCCCAGTAGAACTTaGGTGATGAAGGTGACAATG +
Preference number: 5 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGWPSRT*VMKVTM
Trigger: CATTGTCACCTTCATCACCAAAGTTCTACTGGGCCA...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp CTCTGTGTGGAGGGAAGGCAGGAAGCTTTCAAGCTTCTCCCATCCCTCCATGATGTATCCTGGACAAACTaGACATTGCTTTGGTTCTCT +
Preference number: 5 (lower is better)
Translates to: LCVEGRQEAFKLLPSLHDVSWTN*TLLWFS
Trigger: AGAGAACCAAAGCAATGTCAAGTTTGTCCAGGATAC...ATCATGGAGGGATGGGAGAAGCTTGAAAGCTTCCTGCCTTCCCTCCACACAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp TCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGAAGGCCGGGAAAGATGTGGCTaGTACCAGAACTTTGATGTA +
Preference number: 5 (lower is better)
Translates to: SFSLCLCDPTLVSVWREGRERCG*YQNFDV
Trigger: TACATCAAAGTTCTGGTACAAGCCACATCTTTCCCG...GCCTTCCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS-3UTR CAA 90 bp GACTCTCTTTTTCCCTCTGTTTATGTGACCCCACTCTGGTCTCTGTGTGGAGGGTCTTCTAGAGGATCTTaGCTAGGAATTCTCAGACAG +
Preference number: 5 (lower is better)
Translates to: DSLFPSVYVTPLWSLCGGSSRGS*LGILRQ
Trigger: CTGTCTGAGAATTCCTAGCAAAGATCCTCTAGAAGA...CCCTCCACACAGAGACCAGAGTGGGGTCACATAAACAGAGGGAAAAAGAGAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000230474.2
CDS CCA 72 bp CCCGGAAGCTGTGTGGTTCTGCTTTCCTCGGCCTGCTaGTGGCCCGGCTGCTGTCCCTCCTCCCCAGGGCTC +
Preference number: 6 (lower is better)
Translates to: PGSCVVLLSSAC*WPGCCPSSPGL
Trigger: GAGCCCTGGGGAGGAGGGACAGCAGCCGGGCCACCAGCAGGCCGAGGAAAGCAGAACCACACAGCTTCCGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS CCA 72 bp GGATGGCGGTCTCTCGCCCAGCACCACGGCCCGCACTaGCCACTCCACAACCTCCCAGCAGACGATCCAGCT +
Preference number: 6 (lower is better)
Translates to: GWRSLAQHHGPH*PLHNLPADDPA
Trigger: AGCTGGATCGTCTGCTGGGAGGTTGTGGAGTGGCCAGTGCGGGCCGTGGTGCTGGGCGAGAGACCGCCATCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp CTCCCATTAGGGACCCCACAAGGCTCCCGGAAGCCCTaGCGGCAGGAGCAGCGTCGACTGAGTCCAGGCCTG +
Preference number: 6 (lower is better)
Translates to: LPLGTPQGSRKP*RQEQRRLSPGL
Trigger: CAGGCCTGGACTCAGTCGACGCTGCTCCTGCCGTCAGGGCTTCCGGGAGCCTTGTGGGGTCCCTAATGGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 90 bp CCCGTGGTGAGTGGGCACCAGGGCTGGGGTACCCTCGGCCTTCACTaGGAGATCCGCAACTGTGAGGTGCCCGGCCATATGCTGGGCAGT +
Preference number: 6 (lower is better)
Translates to: PVVSGHQGWGTLGLH*EIRNCEVPGHMLGS
Trigger: ACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGGGTACCCCAGCCCTGGTGCCCACTCACCACGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp GCGCAAGTGGCCTCGGTGTCGCTGCTCGTCCGGTCGTaGAGGAAAAGCTGCGGCCAAGATCCGCTCCGTTAC +
Preference number: 6 (lower is better)
Translates to: AQVASVSLLVRS*RKSCGQDPLRY
Trigger: GTAACGGAGCGGATCTTGGCCGCAGCTTTTCCTGCACGACCGGACGAGCAGCGACACCGAGGCCACTTGCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS GCA 72 bp ACATGGGCTAGCTCGCGCAAGTGGCCTCGGTGTCGCTaGTCGTCCGGTCGTGCAGGAAAAGCTGCGGCCAAG +
Preference number: 6 (lower is better)
Translates to: TWASSRKWPRCR*SSGRAGKAAAK
Trigger: CTTGGCCGCAGCTTTTCCTGCACGACCGGACGAGCAGCGACACCGAGGCCACTTGCGCGAGCTAGCCCATGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS GCA 72 bp CGGACCAGCTGTTCTGAGGGGTCCCCTTTCCAGGGCTaGGCACTGGGTGGAGGTGTAGCCACCTTGAGGGCT +
Preference number: 6 (lower is better)
Translates to: RTSCSEGSPFQG*ALGGGVATLRA
Trigger: AGCCCTCAAGGTGGCTACACCTCCACCCAGTGCGCAGCCCTGGAAAGGGGACCCCTCAGAACAGCTGGTCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp CTCCACCCACAGAGGGCTGCTCTTCATCATCAAGGATaGCGGTCTCTCGCCCAGCACCACGGCCCGCACTGG +
Preference number: 6 (lower is better)
Translates to: LHPQRAALHHQG*RSLAQHHGPHW
Trigger: CCAGTGCGGGCCGTGGTGCTGGGCGAGAGACCGCCATCCTTGATGATGAAGAGCAGCCCTCTGTGGGTGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp GCCTCACTGGGTGCAGGAGAGGCTTGCCTACCTCGCTaGACCACCCCTCTGCAGCCTCCCTCTCTAGTCGCA +
Preference number: 6 (lower is better)
Translates to: ASLGAGEACLPR*TTPLQPPSLVA
Trigger: TGCGACTAGAGAGGGAGGCTGCAGAGGGGTGGTCCAGCGAGGTAGGCAAGCCTCTCCTGCACCCAGTGAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp GTGGGCACCAGGGCTGGGGTACCCTCGGCCTTCACTTaGAGATCCGCAACTGTGAGGTGCCCGGCCATATGC +
Preference number: 6 (lower is better)
Translates to: VGTRAGVPSAFT*RSATVRCPAIC
Trigger: GCATATGGCCGGGCACCTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGGGTACCCCAGCCCTGGTGCCCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp GCTCCCGGAAGCCCTGACGGCAGGAGCAGCGTCGACTaGGTCCAGGCCTGTGGCCTGAATACATCCCAAGGT +
Preference number: 6 (lower is better)
Translates to: APGSPDGRSSVD*VQACGLNTSQG
Trigger: ACCTTGGGATGTATTCAGGCCACAGGCCTGGACTCAGTCGACGCTGCTCCTGCCGTCAGGGCTTCCGGGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp CTAGCACTGTTGGTGTGGCCTCCTGGGCTCCTTTCCTaGGGCCAGCCATTGGGTGAGCCGGGTGCAGAGGTC +
Preference number: 6 (lower is better)
Translates to: LALLVWPPGLLS*GQPLGEPGAEV
Trigger: GACCTCTGCACCCGGCTCACCCAATGGCTGGCCTCAGGAAAGGAGCCCAGGAGGCCACACCAACAGTGCTAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp CAGCAGACGATCCAGCTCCTGTCTTTCAGCAGCAGTTaGGGGCGGCCGGCCGGGGGATTCTGCTGTGTGTTC +
Preference number: 6 (lower is better)
Translates to: QQTIQLLSFSSS*GRPAGGFCCVF
Trigger: GAACACACAGCAGAATCCCCCGGCCGGCCGCCCCCAACTGCTGCTGAAAGACAGGAGCTGGATCGTCTGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 72 bp CCAGCAGACGATCCAGCTCCTGTCTTTCAGCAGCAGTaGGGGGCGGCCGGCCGGGGGATTCTGCTGTGTGTT +
Preference number: 6 (lower is better)
Translates to: PADDPAPVFQQQ*GAAGRGILLCV
Trigger: AACACACAGCAGAATCCCCCGGCCGGCCGCCCCCAACTGCTGCTGAAAGACAGGAGCTGGATCGTCTGCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp GCAGGAGCAGCGTCGACTGAGTCCAGGCCTGTGGCCTaGATACATCCCAAGGTGCAGGCCTCCACCCACAGA +
Preference number: 6 (lower is better)
Translates to: AGAASTESRPVA*IHPKVQASTHR
Trigger: TCTGTGGGTGGAGGCCTGCACCTTGGGATGTATTCAGGCCACAGGCCTGGACTCAGTCGACGCTGCTCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp CTTCCGGAAAACCTTCTCCCGGAAGCTGTGTGGTTCTaGTTTCCTCGGCCTGCTGGTGGCCCGGCTGCTGTC +
Preference number: 6 (lower is better)
Translates to: LPENLLPEAVWF*FPRPAGGPAAV
Trigger: GACAGCAGCCGGGCCACCAGCAGGCCGAGGAAAGCAGAACCACACAGCTTCCGGGAGAAGGTTTTCCGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS GCA 72 bp CCCAGGGTCCTCCAGGATCACCACCTCCCGGTAGCCTaGTGGACGGTAGCCAAAGTCCCCATTGGCTGGTTT +
Preference number: 6 (lower is better)
Translates to: PRVLQDHHLPVA*WTVAKVPIGWF
Trigger: AAACCAGCCAATGGGGACTTTGGCTACCGTCCAGCAGGCTACCGGGAGGTGGTGATCCTGGAGGACCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp CACACTGCAGGCTGCTCCTTGACGCAGGAGGTCTGCTaGTGTGCTCATGTTGGTAGGCACTGGGGCCTCTGG +
Preference number: 6 (lower is better)
Translates to: HTAGCSLTQEVC*CAHVGRHWGLW
Trigger: CCAGAGGCCCCAGTGCCTACCAACATGAGCACAGCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp GAGCACACTGCAGGCTGCTCCTTGACGCAGGAGGTCTaGTGCTGTGCTCATGTTGGTAGGCACTGGGGCCTC +
Preference number: 6 (lower is better)
Translates to: EHTAGCSLTQEV*CCAHVGRHWGL
Trigger: GAGGCCCCAGTGCCTACCAACATGAGCACAGCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGTGTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp AGGGTCCTCCAGGATCACCACCTCCCGGTAGCCTGCTaGACGGTAGCCAAAGTCCCCATTGGCTGGTTTCCC +
Preference number: 6 (lower is better)
Translates to: RVLQDHHLPVAC*TVAKVPIGWFP
Trigger: GGGAAACCAGCCAATGGGGACTTTGGCTACCGTCCAGCAGGCTACCGGGAGGTGGTGATCCTGGAGGACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp ACAACAGAGGGCAAGGCCTCGCCAGGACTCAGTCTCTaGGTGGGTGCCAAGGAGGGAGACCTGGTGGTGTCT +
Preference number: 6 (lower is better)
Translates to: TTEGKASPGLSL*VGAKEGDLVVS
Trigger: AGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGGCGAGGCCTTGCCCTCTGTTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp TCGGTGTCGCTGCTCGTCCGGTCGTGCAGGAAAAGCTaGGGCCAAGATCCGCTCCGTTACATAGGTGAGGTC +
Preference number: 6 (lower is better)
Translates to: SVSLLVRSCRKS*GQDPLRYIGEV
Trigger: GACCTCACCTATGTAACGGAGCGGATCTTGGCCGCAGCTTTTCCTGCACGACCGGACGAGCAGCGACACCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS GCA 72 bp CGGGTGCATAGGGGTACGGCCCTTCTGACAGTGACCTaGAGAGGCGTCTCTTCTCCACAGAGGCTTCTGCGT +
Preference number: 6 (lower is better)
Translates to: RVHRGTALLTVT*RGVSSPQRLLR
Trigger: ACGCAGAAGCCTCTGTGGAGAAGAGACGCCTCTGCAGGTCACTGTCAGAAGGGCCGTACCCCTATGCACCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp ACTTGGAGATCCGCAACTGTGAGGTGCCCGGCCATATaGTGGGCAGTAGCTGGGAACCGCTCCTCCATAGCC +
Preference number: 6 (lower is better)
Translates to: TWRSATVRCPAI*WAVAGNRSSIA
Trigger: GGCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTCCAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp CACTGCACTGAGGATCTCGGGGAGACCGAGGTAGCGTaGTGTGTCCACTGGAGCCATCCCTCCAGGATGGTT +
Preference number: 6 (lower is better)
Translates to: HCTEDLGETEVA*CVHWSHPSRMV
Trigger: AACCATCCTGGAGGGATGGCTCCAGTGGACACAGCACGCTACCTCGGTCTCCCCGAGATCCTCAGTGCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp CACCTTGGGTGGCTTCAGGCAGCCATAGTCAGGCATTaGGGCATGATGATGCCCACAGGCAGGCACCAGCAG +
Preference number: 6 (lower is better)
Translates to: HLGWLQAAIVRH*GMMMPTGRHQQ
Trigger: CTGCTGGTGCCTGCCTGTGGGCATCATCATGCCCCAATGCCTGACTATGGCTGCCTGAAGCCACCCAAGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp GATCTCGGGGAGACCGAGGTAGCGTGCTGTGTCCACTaGAGCCATCCCTCCAGGATGGTTCAGGTGACTCTG +
Preference number: 6 (lower is better)
Translates to: DLGETEVACCVH*SHPSRMVQVTL
Trigger: CAGAGTCACCTGAACCATCCTGGAGGGATGGCTCCAGTGGACACAGCACGCTACCTCGGTCTCCCCGAGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 72 bp CCACCTTGGGTGGCTTCAGGCAGCCATAGTCAGGCATaGGGGCATGATGATGCCCACAGGCAGGCACCAGCA +
Preference number: 6 (lower is better)
Translates to: PPWVASGSHSQA*GHDDAHRQAPA
Trigger: TGCTGGTGCCTGCCTGTGGGCATCATCATGCCCCAATGCCTGACTATGGCTGCCTGAAGCCACCCAAGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 72 bp CTGAGTGGGTGCCAAGGAGGGAGACCTGGTGGTGTCTaGCCGTCGGTTGCTTTCCTTGCCCTGAACTGGGCT +
Preference number: 6 (lower is better)
Translates to: LSGCQGGRPGGV*PSVAFLALNWA
Trigger: AGCCCAGTTCAGGGCAAGGAAAGCAACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 90 bp CTTCCTCACCCACCTTGGGTGGCTTCAGGCAGCCATAGTCAGGCATaGGGGCATGATGATGCCCACAGGCAGGCACCAGCAGAGGCAATG +
Preference number: 6 (lower is better)
Translates to: LPHPPWVASGSHSQA*GHDDAHRQAPAEAM
Trigger: CATTGCCTCTGCTGGTGCCTGCCTGTGGGCATCATCATGCCCCAATGCCTGACTATGGCTGCCTGAAGCCACCCAAGGTGGGTGAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp CTGGTGGTGTCTTGCCGTCGGTTGCTTTCCTTGCCCTaGACTGGGCTGCTGGTGTGTAAGGGTGTGGAGGGA +
Preference number: 6 (lower is better)
Translates to: LVVSCRRLLSLP*TGLLVCKGVEG
Trigger: TCCCTCCACACCCTTACACACCAGCAGCCCAGTTCAGGGCAAGGAAAGCAACCGACGGCAAGACACCACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp AGAGCTGGCCTTGGCCACAGCCTGAGGGCCAGTCAATaGCTCTGTCTCCACCGAGGTCAGGTAGAGCACACT +
Preference number: 6 (lower is better)
Translates to: RAGLGHSLRASQ*LCLHRGQVEHT
Trigger: AGTGTGCTCTACCTGACCTCGGTGGAGACAGAGTCATTGACTGGCCCTCAGGCTGTGGCCAAGGCCAGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp CTGAGTCCAGGCCTGTGGCCTGAATACATCCCAAGGTaGAGGCCTCCACCCACAGAGGGCTGCTCTTCATCA +
Preference number: 6 (lower is better)
Translates to: LSPGLWPEYIPR*RPPPTEGCSSS
Trigger: TGATGAAGAGCAGCCCTCTGTGGGTGGAGGCCTGCACCTTGGGATGTATTCAGGCCACAGGCCTGGACTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp CCAAGGAGGGAGACCTGGTGGTGTCTTGCCGTCGGTTaGTTTCCTTGCCCTGAACTGGGCTGCTGGTGTGTA +
Preference number: 6 (lower is better)
Translates to: PRRETWWCLAVG*FPCPELGCWCV
Trigger: TACACACCAGCAGCCCAGTTCAGGGCAAGGAAAGCAACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp TGTCTCCACCGAGGTCAGGTAGAGCACACTGCAGGCTaGTCCTTGACGCAGGAGGTCTGCTGCTGTGCTCAT +
Preference number: 6 (lower is better)
Translates to: CLHRGQVEHTAG*SLTQEVCCCAH
Trigger: ATGAGCACAGCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGTGTGCTCTACCTGACCTCGGTGGAGACA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp GAGTACTGCGTTGCTTTGAGTGGTTCAGAGACTTGGTaGACCCCAGGTGTTCTATGCGCCGGACCGGGGCTG +
Preference number: 6 (lower is better)
Translates to: EYCVALSGSETW*TPGVLCAGPGL
Trigger: CAGCCCCGGTCCGGCGCATAGAACACCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 72 bp AACTGTGAGGTGCCCGGCCATATGCTGGGCAGTAGCTaGGAACCGCTCCTCCATAGCCATAGGTTACCAGGG +
Preference number: 6 (lower is better)
Translates to: NCEVPGHMLGSS*EPLLHSHRLPG
Trigger: CCCTGGTAACCTATGGCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp TGGAGATCCGCAACTGTGAGGTGCCCGGCCATATGCTaGGCAGTAGCTGGGAACCGCTCCTCCATAGCCATA +
Preference number: 6 (lower is better)
Translates to: WRSATVRCPAIC*AVAGNRSSIAI
Trigger: TATGGCTATGGAGGAGCGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp GACTCAGTCTCTGAGTGGGTGCCAAGGAGGGAGACCTaGTGGTGTCTTGCCGTCGGTTGCTTTCCTTGCCCT +
Preference number: 6 (lower is better)
Translates to: DSVSEWVPRRET*WCLAVGCFPCP
Trigger: AGGGCAAGGAAAGCAACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp GGCCACGAAACCAAAGATCTTGGAGGTGGCTCCATCTaGGTTGGTCCATCTGCGGTCCTGGGGGTCAGTGCT +
Preference number: 6 (lower is better)
Translates to: GHETKDLGGGSI*VGPSAVLGVSA
Trigger: AGCACTGACCCCCAGGACCGCAGATGGACCAACCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCGTGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 72 bp CACCGAGGTCAGGTAGAGCACACTGCAGGCTGCTCCTaGACGCAGGAGGTCTGCTGCTGTGCTCATGTTGGT +
Preference number: 6 (lower is better)
Translates to: HRGQVEHTAGCS*TQEVCCCAHVG
Trigger: ACCAACATGAGCACAGCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGTGTGCTCTACCTGACCTCGGTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 90 bp AAGCTCCTGGGTAGAGTACTGCGTTGCTTTGAGTGGTTCAGAGACTaGGTGGACCCCAGGTGTTCTATGCGCCGGACCGGGGCTGTGCTT +
Preference number: 6 (lower is better)
Translates to: KLLGRVLRCFEWFRD*VDPRCSMRRTGAVL
Trigger: AAGCACAGCCCCGGTCCGGCGCATAGAACACCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTCTACCCAGGAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS TCA 72 bp CCTTTGCTCCCCTTGCAGTACAACACAACCACGTGCTaGGGGTCGGCACTGAGCCACGTCTCCATGGCTTTG +
Preference number: 6 (lower is better)
Translates to: PLLPLQYNTTTC*GSALSHVSMAL
Trigger: CAAAGCCATGGAGACGTGGCTCAGTGCCGACCCTCAGCACGTGGTTGTGTTGTACTGCAAGGGGAGCAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp AGAGGTGGGGCATGTAGTTCAGGCCAACCAAAGTCTTaGACCTTGGGGTTCAGGCGGGTGAGGTCATGCCGT +
Preference number: 6 (lower is better)
Translates to: RGGACSSGQPKS*TLGFRRVRSCR
Trigger: ACGGCATGACCTCACCCGCCTGAACCCCAAGGTGCAAGACTTTGGTTGGCCTGAACTACATGCCCCACCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp AGGTTACCAGGGCAGGGTACCCTGAATGCCCATACCTaGCTTCAGAGCACACGGCATAGGAGCAGCCCTCAT +
Preference number: 6 (lower is better)
Translates to: RLPGQGTLNAHT*LQSTRHRSSPH
Trigger: ATGAGGGCTGCTCCTATGCCGTGTGCTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGCCCTGGTAACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp AGTTTTCTTCCGGAAAACCTTCTCCCGGAAGCTGTGTaGTTCTGCTTTCCTCGGCCTGCTGGTGGCCCGGCT +
Preference number: 6 (lower is better)
Translates to: SFLPENLLPEAV*FCFPRPAGGPA
Trigger: AGCCGGGCCACCAGCAGGCCGAGGAAAGCAGAACCACACAGCTTCCGGGAGAAGGTTTTCCGGAAGAAAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
CDS CCA 72 bp TCAGTCTCTGAGTGGGTGCCAAGGAGGGAGACCTGGTaGTGTCTTGCCGTCGGTTGCTTTCCTTGCCCTGAA +
Preference number: 6 (lower is better)
Translates to: SVSEWVPRRETW*CLAVGCFPCPE
Trigger: TTCAGGGCAAGGAAAGCAACCGACGGCAAGACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp AGATGCAAAGGTGACATGTTGATTGGTGCTTCTGGCTaGTGGCGACGGCTGTTGCCCAGACCCAGGCAGGTG +
Preference number: 6 (lower is better)
Translates to: RCKGDMLIGASG*WRRLLPRPRQV
Trigger: CACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACCAGCCAGAAGCACCAATCAACATGTCACCTTTGCATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp ATCTTCACGCCTTTGGGCCCAGTCTCGATGAGGAAATaGCGGACCAGCTGTTCTGAGGGGTCCCCTTTCCAG +
Preference number: 6 (lower is better)
Translates to: IFTPLGPVSMRK*RTSCSEGSPFQ
Trigger: CTGGAAAGGGGACCCCTCAGAACAGCTGGTCCGCCATTTCCTCATCGAGACTGGGCCCAAAGGCGTGAAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 72 bp GGTAGAGTACTGCGTTGCTTTGAGTGGTTCAGAGACTaGGTGGACCCCAGGTGTTCTATGCGCCGGACCGGG +
Preference number: 6 (lower is better)
Translates to: GRVLRCFEWFRD*VDPRCSMRRTG
Trigger: CCCGGTCCGGCGCATAGAACACCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTCTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS TCA 72 bp GCTGTGCTTCTCCGCAGCTCCGCAGGGGGCAAGGCCTaGCAGGATGAAGTCACCTTTGCTTCACATTTTCTG +
Preference number: 6 (lower is better)
Translates to: AVLLRSSAGGKA*QDEVTFASHFL
Trigger: CAGAAAATGTGAAGCAAAGGTGACTTCATCCTGTCAGGCCTTGCCCCCTGCGGAGCTGCGGAGAAGCACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS GCA 72 bp CCTCATGGTGAGGGTTGCCAGCGCCTGGTCTGCCCCTaGAGAGATCTTGCTGTAGTGCATATAAGCAGAGAC +
Preference number: 6 (lower is better)
Translates to: PHGEGCQRLVCP*RDLAVVHISRD
Trigger: GTCTCTGCTTATATGCACTACAGCAAGATCTCTGCAGGGGCAGACCAGGCGCTGGCAACCCTCACCATGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 72 bp TTTGAGGAGAAGGGCTGGCTCCAGGCTGATACAAAGTaGCTGAGGCCCTGGACCTGCTATGCGGTAGACTCC +
Preference number: 6 (lower is better)
Translates to: FEEKGWLQADTK*LRPWTCYAVDS
Trigger: GGAGTCTACCGCATAGCAGGTCCAGGGCCTCAGCAACTTTGTATCAGCCTGGAGCCAGCCCTTCTCCTCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 72 bp ACGAAACCAAAGATCTTGGAGGTGGCTCCATCTGGGTaGGTCCATCTGCGGTCCTGGGGGTCAGTGCTAGAG +
Preference number: 6 (lower is better)
Translates to: TKPKILEVAPSG*VHLRSWGSVLE
Trigger: CTCTAGCACTGACCCCCAGGACCGCAGATGGACCAACCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 90 bp TCCAGAGGTGGGGCATGTAGTTCAGGCCAACCAAAGTCTTGCACCTaGGGGTTCAGGCGGGTGAGGTCATGCCGTTTCTCTGAAAGGTTG +
Preference number: 6 (lower is better)
Translates to: SRGGACSSGQPKSCT*GFRRVRSCRFSERL
Trigger: CAACCTTTCAGAGAAACGGCATGACCTCACCCGCCTGAACCCCAAGGTGCAAGACTTTGGTTGGCCTGAACTACATGCCCCACCTCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp AGGTTGAAGAGCAGGTACTTGTCTCTGTGCTTGGATTaGAGCACATGGGCTAGCTCGCGCAAGTGGCCTCGG +
Preference number: 6 (lower is better)
Translates to: RLKSRYLSLCLD*STWASSRKWPR
Trigger: CCGAGGCCACTTGCGCGAGCTAGCCCATGTGCTTCAATCCAAGCACAGAGACAAGTACCTGCTCTTCAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS TCA 72 bp CCAAGGCGCCGTCCACGCTATCCTCATGGTGCTGATTaGAGTTTTCATAGGAGTCCCAGCGTACAGCAGGCT +
Preference number: 6 (lower is better)
Translates to: PRRRPRYPHGAD*SFHRSPSVQQA
Trigger: AGCCTGCTGTACGCTGGGACTCCTATGAAAACTTCAATCAGCACCATGAGGATAGCGTGGACGGCGCCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp TCCTCCATAGCCATAGGTTACCAGGGCAGGGTACCCTaGATGCCCATACCTGCCTTCAGAGCACACGGCATA +
Preference number: 6 (lower is better)
Translates to: SSIAIGYQGRVP*MPIPAFRAHGI
Trigger: TATGCCGTGTGCTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGCCCTGGTAACCTATGGCTATGGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp GTGACATCTGGGAGAGGAGATGCAAAGGTGACATGTTaGTTGGTGCTTCTGGCTGGTGGCGACGGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: VTSGRGDAKVTC*LVLLAGGDGCC
Trigger: GCAACAGCCGTCGCCACCAGCCAGAAGCACCAATCAACATGTCACCTTTGCATCTCCTCTCCCAGATGTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS GCA 72 bp TCACCTTTGCTTCACATTTTCTGTGTGTGGCCACCTTaGAGACTCGGCAGGAGACACCGGTCCCATCGATGG +
Preference number: 6 (lower is better)
Translates to: SPLLHIFCVWPP*RLGRRHRSHRW
Trigger: CCATCGATGGGACCGGTGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAGAAAATGTGAAGCAAAGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS GCA 72 bp GGATCTAGGCTGAAGCTCCTGGGTAGAGTACTGCGTTaGTTTGAGTGGTTCAGAGACTTGGTGGACCCCAGG +
Preference number: 6 (lower is better)
Translates to: GSRLKLLGRVLR*FEWFRDLVDPR
Trigger: CCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTCTACCCAGGAGCTTCAGCCTAGATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 72 bp CCTTGCAGACTCGGCAGGAGACACCGGTCCCATCGATaGTCACCTTACACACTGCACACACTGGAGTTTTCT +
Preference number: 6 (lower is better)
Translates to: PCRLGRRHRSHR*SPYTLHTLEFS
Trigger: AGAAAACTCCAGTGTGTGCAGTGTGTAAGGTGACCATCGATGGGACCGGTGTCTCCTGCCGAGTCTGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 72 bp CGTGTTGTAATCCACGGAGACAGAGGGATCATTCCGTaGGGTGTTGCCTTTGACCTTCTCAGGGCTGGAGGA +
Preference number: 6 (lower is better)
Translates to: RVVIHGDRGIIP*GVAFDLLRAGG
Trigger: TCCTCCAGCCCTGAGAAGGTCAAAGGCAACACCCCACGGAATGATCCCTCTGTCTCCGTGGATTACAACACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CAA 72 bp GTCACCTTTGCTTCACATTTTCTGTGTGTGGCCACCTaGCAGACTCGGCAGGAGACACCGGTCCCATCGATG +
Preference number: 6 (lower is better)
Translates to: VTFASHFLCVAT*QTRQETPVPSM
Trigger: CATCGATGGGACCGGTGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAGAAAATGTGAAGCAAAGGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CAA 90 bp TCGGCACTGAGCCACGTCTCCATGGCTTTGCAGATGGAACACAACTaGTCCAGAGGTGGGGCATGTAGTTCAGGCCAACCAAAGTCTTGC +
Preference number: 6 (lower is better)
Translates to: SALSHVSMALQMEHN*SRGGACSSGQPKSC
Trigger: GCAAGACTTTGGTTGGCCTGAACTACATGCCCCACCTCTGGACAAGTTGTGTTCCATCTGCAAAGCCATGGAGACGTGGCTCAGTGCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS CCA 72 bp AGGATGAAGTCACCTTTGCTTCACATTTTCTGTGTGTaGCCACCTTGCAGACTCGGCAGGAGACACCGGTCC +
Preference number: 6 (lower is better)
Translates to: RMKSPLLHIFCV*PPCRLGRRHRS
Trigger: GGACCGGTGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAGAAAATGTGAAGCAAAGGTGACTTCATCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 72 bp CGGAAGCTGTGTGGTTCTGCTTTCCTCGGCTGCGGGTaGGATGACAGACAAATAGGGGTATGTGTTCCTAGT +
Preference number: 6 (lower is better)
Translates to: RKLCGSAFLGCG*DDRQIGVCVPS
Trigger: ACTAGGAACACATACCCCTATTTGTCTGTCATCCCACCCGCAGCCGAGGAAAGCAGAACCACACAGCTTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230474.2
CDS CAA 72 bp ACGGAGACAGAGGGATCATTCCGTGGGGTGTTGCCTTaGACCTTCTCAGGGCTGGAGGAGAAAACAAACTCC +
Preference number: 6 (lower is better)
Translates to: TETEGSFRGVLP*TFSGLEEKTNS
Trigger: GGAGTTTGTTTTCTCCTCCAGCCCTGAGAAGGTCAAAGGCAACACCCCACGGAATGATCCCTCTGTCTCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2
CDS TCA 72 bp CTTGGGGTTCAGGCGGGTGAGGTCATGCCGTTTCTCTaGAAGGTTGAAGAGCAGGTACTTGTCTCTGTGCTT +
Preference number: 6 (lower is better)
Translates to: LGVQAGEVMPFL*KVEEQVLVSVL
Trigger: AAGCACAGAGACAAGTACCTGCTCTTCAACCTTTCAGAGAAACGGCATGACCTCACCCGCCTGAACCCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS GCA 72 bp GGAGACACCGGTCCCATCGATGGTCACCTTACACACTaGACACACTGGAGTTTTCTTCCGGAAAACCTTCTC +
Preference number: 6 (lower is better)
Translates to: GDTGPIDGHLTH*THWSFLPENLL
Trigger: GAGAAGGTTTTCCGGAAGAAAACTCCAGTGTGTGCAGTGTGTAAGGTGACCATCGATGGGACCGGTGTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 72 bp GGTCCCATCGATGGTCACCTTACACACTGCACACACTaGAGTTTTCTTCCGGAAAACCTTCTCCCGGAAGCT +
Preference number: 6 (lower is better)
Translates to: GPIDGHLTHCTH*SFLPENLLPEA
Trigger: AGCTTCCGGGAGAAGGTTTTCCGGAAGAAAACTCCAGTGTGTGCAGTGTGTAAGGTGACCATCGATGGGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 72 bp CTGAAGCTCCTGGGTAGAGTACTGCGTTGCTTTGAGTaGTTCAGAGACTTGGTGGACCCCAGGTGTTCTATG +
Preference number: 6 (lower is better)
Translates to: LKLLGRVLRCFE*FRDLVDPRCSM
Trigger: CATAGAACACCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTCTACCCAGGAGCTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000229592.2
ENSMUST00000230474.2
CDS CCA 72 bp TTGCTTTGGTTCTCTTGTAAAGGGTGTTCTGGGGGTTaGGTGACATCTGGGAGAGGAGATGCAAAGGTGACA +
Preference number: 6 (lower is better)
Translates to: LLWFSCKGCSGG*VTSGRGDAKVT
Trigger: TGTCACCTTTGCATCTCCTCTCCCAGATGTCACCCAACCCCCAGAACACCCTTTACAAGAGAACCAAAGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046144.10
ENSMUST00000169627.9
ENSMUST00000228958.2
ENSMUST00000230474.2